RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2776
(803 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 199 bits (507), Expect = 7e-54
Identities = 123/859 (14%), Positives = 214/859 (24%), Gaps = 236/859 (27%)
Query: 1 MEEDSATLTIVKFEDKDL------GDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-I 52
L F +D Y N G S V + A
Sbjct: 89 QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148
Query: 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT-------- 104
+S + P DE + Y V
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWH----TDEEENYFPGAEYDGKYLVLPSGELHIR 204
Query: 105 KLTTKHEY-MFRVAAVNAIG-TGPASHNTRYVVVKAPVDAEAP--VIQEPLKDSVAGFQS 160
++ + Y ++ + + S +V+ P+ + P V S
Sbjct: 205 EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSS 264
Query: 161 SVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNV----ARFTVVNCSESSEGRYTCK 215
++ L C G P P +WYK + + + + + V + + G+Y C
Sbjct: 265 TMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 324
Query: 216 ATNEAGTAETSCTLLVQGK-EIKESARHIITARG-------------------------- 248
N G L V K G
Sbjct: 325 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 384
Query: 249 --TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAV 306
++ L I+ V ++D+ N + + E++A P
Sbjct: 385 GHSESVLRIESVKKEDKGMYQCFVRNDRESA------------EASAELKLGGRFDPP-- 430
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
T+ P + +P ++ W GK+I + R+ + T
Sbjct: 431 VIRQAFQEETMEPG-PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVN---- 485
Query: 366 KRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARF 425
V LN+ SV
Sbjct: 486 ---------GDVVSYLNITSVHA------------------------------------- 499
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLA 485
+ G Y C A ++ G AE
Sbjct: 500 -------NDGGLYKCIAKSKVGVAEH---------------------------------- 518
Query: 486 VPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN 545
+ L + P I+ ++ + + V G+P I W ++
Sbjct: 519 --------SAKLNVYGLPY---IR----QMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 546 GAEITDSKACRIFIDEETSTIAIYSVVRA-DTSTYTVTATNAAG-STSLDLSLQVLG--- 600
+ ++ ++F + T+ I +V R D +TYT A N G S L +QV+
Sbjct: 564 NRALPINRKQKVFPN---GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 601 YIIQQQEKNSLKFTKVATLD--------PSTLQYT------------------------- 627
I E+ + + TL P + +T
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLT 680
Query: 628 VENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
+E + F A N G + TT L P +I +K +
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQ-QFTTPLNVYV----------PPRWILEPTDKAFAQG 729
Query: 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK---REIFDGENIILELKEADSETDAGDY 744
++ K P P + W + K + E L + + G Y
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT-NEGYY 788
Query: 745 KVVATNELGSATHGARVTV 763
A N +GS +
Sbjct: 789 LCEAINGIGSGLSAVIMIS 807
Score = 190 bits (483), Expect = 1e-50
Identities = 123/799 (15%), Positives = 212/799 (26%), Gaps = 222/799 (27%)
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
+ K +F A+ A G+ + N K PV ++EP +
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPV-----FLKEPTNRIDFSNSTG 56
Query: 162 VTLECVVSGVPTPDIKWYKDD----SLIKGRNITYENNVARFTVVNCS----ESSEGRYT 213
+EC SG P P+I W + D + G + F E Y
Sbjct: 57 AEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116
Query: 214 CKATNEAGTAETSCTLLVQG---------------------------------------- 233
C A N+ G+ + +
Sbjct: 117 CLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176
Query: 234 --------KEIKESARHIITARGTQRKLVIKRVTQ-DDETDIGVLALNVKSVSKLKWLAR 284
+ ++++ G L I+ V D + +
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGE---LHIREVGPEDGYKSYQCRTKHRLTG-------- 225
Query: 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE---LSSPDIQVKWLK 341
+ L +T + AV + L + + G +T + P +W K
Sbjct: 226 -ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYK 284
Query: 342 KGKEIKESARHIITSRGTQ--RKLVIKRVTQDDE------------TDIGVLALNVKS-- 385
+ ++ R Q L+IK +D + L V +
Sbjct: 285 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 344
Query: 386 --VSKLKWLDFGSGG-----------------WWFESKYKDDSLIKGRNITYENNVARFT 426
G W KD G+ I + +V R
Sbjct: 345 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW-----MKD-----GKAIGHSESVLRIE 394
Query: 427 VVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAV 486
+ + +G Y C N+ +AE
Sbjct: 395 --SVKKEDKGMYQCFVRNDRESAEA----------------------------------- 417
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
+ L++ P I+ + + + ++ G P PEISW +G
Sbjct: 418 -------SAELKLGGRFDPPVIR---QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDG 467
Query: 547 AEITDSKACRIFID-----EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG- 600
+I ++ ++ + S + I SV D Y A + G L V G
Sbjct: 468 KKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL 527
Query: 601 -YIIQQQ-----EKNSLKFTKVATLDPS------------------------TLQ-YTVE 629
YI Q + +L T P TL VE
Sbjct: 528 PYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE 587
Query: 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE-RFEEKTVKEKG 688
D++ Y A+N G + E+ + P I FEE +
Sbjct: 588 RNSDQATY--TCVAKNQEGYSARGSLEVQVM----------VLPRIIPFAFEEGPAQVGQ 635
Query: 689 TIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-ILELKEADSETDAGDYKV 746
+ L V P +I W + + + G +L ++ ++ AG++
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-HAGNFTC 694
Query: 747 VATNELGSATHGARVTVDV 765
A N G + V V
Sbjct: 695 HARNLAGHQQFTTPLNVYV 713
Score = 145 bits (368), Expect = 4e-36
Identities = 83/546 (15%), Positives = 159/546 (29%), Gaps = 136/546 (24%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEI--KESARHIITSRGTQRKLV 364
FL + + + A + + S +P ++ W++ I+S G LV
Sbjct: 41 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LV 97
Query: 365 IKRVTQDD---ETDIGV---LALN----VKSVS-------------KLKWLDFGSGG--- 398
+D E V LA N + S + G
Sbjct: 98 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 157
Query: 399 -----------------WWFESK--YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYT 439
W + + Y + G+ + + V E Y
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG-PEDGYKSYQ 216
Query: 440 CKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499
C+ + + + + + + P + +
Sbjct: 217 CRTKHRLTGETRLS-----ATKGRLVITEPISSAVPKV---------------------V 250
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI-- 557
S + + G+P P W K T +A +
Sbjct: 251 SLAKFDMKTYSGSSTMA-----------LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLKFTK 615
+ + + T+ I V D+ Y N+ G S++ L V ++ F +
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 359
Query: 616 VATL-----------------------DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
A S L +E+++ + + +Q F N E
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL--RIESVKKEDKGMYQCFVRNDRESA-E 416
Query: 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP 712
A+ EL LG P+ + F+E+T++ ++ L +P P I W + K
Sbjct: 417 ASAEL-------KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKK 469
Query: 713 LLSSPKKR-----EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
+ ++ + + + L + D G YK +A +++G A H A++ V
Sbjct: 470 IANNDRYQVGQYVTVNGDVVSYLNITSV-HANDGGLYKCIAKSKVGVAEHSAKLNV---- 524
Query: 768 VGRPSI 773
G P I
Sbjct: 525 YGLPYI 530
Score = 119 bits (299), Expect = 8e-28
Identities = 69/417 (16%), Positives = 128/417 (30%), Gaps = 126/417 (30%)
Query: 405 YKD-DSLIKGRNITYENNV----ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
YK + + + + + V + + G+Y C N G
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV-------- 334
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T L + +P + +Q
Sbjct: 335 ----------------------------------ETVLTVTAPLS------AKIDPPTQT 354
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579
+ +Y G P +SWMK+G I S+ S + I SV + D Y
Sbjct: 355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMY 404
Query: 580 TVTATNAAGSTSLDLSLQVLGY----IIQQQEKN-------------------------- 609
N S L++ G +I+Q +
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE 464
Query: 610 -------------SLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
++ V S L + ++ ++ A++ VG+ E + +
Sbjct: 465 LDGKKIANNDRYQVGQYVTVNGDVVSYLN--ITSVHANDGGLYKCIAKSKVGVA-EHSAK 521
Query: 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS 716
L +I + E+K + T+ + V P SIVW R+N+ L +
Sbjct: 522 LNV-----------YGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN 570
Query: 717 PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
K++ +G L ++ + +D Y VA N+ G + AR +++V+ + P I
Sbjct: 571 RKQKVFPNGT---LIIENVERNSDQATYTCVAKNQEGYS---ARGSLEVQVMVLPRI 621
Score = 70.0 bits (171), Expect = 2e-12
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEK-TVKEKGTIRLMAKVK 697
F A + G + L A A + P+F++ + + K
Sbjct: 14 FAAVALIACG-----SQTLAANPPDADQ----KGPVFLKEPTNRIDFSNSTGAEIECKAS 64
Query: 698 ASPAPSIVWFRNNKPLLS-SPKKREIF-DGENIILELKEADS--ETDAGDYKVVATNELG 753
+P P I+W R++ + P R+I DG+ + + D E A Y +A N+ G
Sbjct: 65 GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Query: 754 SATHGARVTVDVEKVGRPSI 773
S V V V
Sbjct: 125 SIIS---RDVHVRAVVAQYY 141
Score = 46.5 bits (110), Expect = 3e-05
Identities = 27/146 (18%), Positives = 43/146 (29%), Gaps = 13/146 (8%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
+ + LTI E G++T N G TT + + P P S
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSD 731
Query: 60 VTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYM 113
+ + DG KD + I T V + +E
Sbjct: 732 AKVECKA---DGFPKPQVTWKKAVGDTPGEYKD-LKKSDNIRVEEGTLHVDNIQKTNEGY 787
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAP 139
+ A+N IG+ + V+A
Sbjct: 788 YLCEAINGIGS--GLSAVIMISVQAH 811
Score = 30.3 bits (68), Expect = 2.8
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
+ + + VA GS T A +K
Sbjct: 1 MNMPNE-RLKWLMLFAAVALIACGSQTLAANPPDADQK 37
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 194 bits (494), Expect = 2e-53
Identities = 126/703 (17%), Positives = 208/703 (29%), Gaps = 220/703 (31%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
E P EPL+ A +TL+C V G P I WYK+
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKE--------------------- 42
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDD 262
+++ + + + + LVI +V D
Sbjct: 43 ------------------------------HTKLRSAPAYKMQFKNNVASLVINKVDHSD 72
Query: 263 ETDIGV---LALN----VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315
G A N V S + L + + P F KL V
Sbjct: 73 V---GEYTCKAENSVGAVASSAVLV-----------------IKERKLPP-SFARKLKDV 111
Query: 316 TLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE- 373
F+ ++ S +QV W K G+ +K+ A + L I + Q
Sbjct: 112 H-ETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 374 -----------TDIGVLALNVKS-------VSKLKWLDFGSGG----------------W 399
T L + K +D G
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKIT 230
Query: 400 WFESKYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWP 456
W KD+ I+ +T N A TV+ ++ G+YTC A+N AG
Sbjct: 231 W----AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC----- 281
Query: 457 GLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLK 516
+ L +Q PP+ +
Sbjct: 282 -------------------------------------SAQLGVQEPPR-----FIKKLEP 299
Query: 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT 576
S+ + + E K G P ++ W K+ EI +S R+ E + + +Y++ D+
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS 359
Query: 577 STYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLKFTKVATLD-------------- 620
YT A NAAGS S SL+V ++ L+
Sbjct: 360 GDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Query: 621 ------PSTLQYTVEN-------------LRDKSEYYFQVFAENSVGLGPEATTELVALA 661
S +Y + + D EY Q A N VG + A
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY--QCKASNDVGSD-TCVGSITLKA 476
Query: 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
P F+++ + + ++L A ++ + S+ WF++ ++
Sbjct: 477 ----------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW 526
Query: 722 I-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
I + L+ A+ +AG Y NE G+ A ++V
Sbjct: 527 ISYSENIATLQFSRAEPA-NAGKYTCQIKNEAGTQECFATLSV 568
Score = 178 bits (454), Expect = 5e-48
Identities = 92/534 (17%), Positives = 171/534 (32%), Gaps = 141/534 (26%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366
F+ L V T Q ++ +P+I++ W K+ +++ + + + + LVI
Sbjct: 8 FIEPLEHVEAAIG-EPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVIN 66
Query: 367 RVTQDDE------------TDIGVLALNVKS-------VSKLKWLDFGSGG--------- 398
+V D L +K KLK + G
Sbjct: 67 KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRIN 126
Query: 399 --------WWFESKYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447
W YKD L+K ++ +NVA ++ +S G+Y C A+N G
Sbjct: 127 GSEPLQVSW-----YKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA 507
TA + + L + P
Sbjct: 182 TASS------------------------------------------SAKLTLSEHEVPPF 199
Query: 508 IKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIA 567
S L++ + G +I+W K+ EI ++ + E T+T+
Sbjct: 200 FD---LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 256
Query: 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKN---------------- 609
+ V + D YT A+N AG S L V I++ E +
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 316
Query: 610 ------------------SLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
S KF + L + NL + + A N+ G
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVL--EMYNLSVEDSGDYTCEAHNAAGS-A 373
Query: 652 EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK 711
++T L P+F ++ + + L +++ +P + W ++ +
Sbjct: 374 SSSTSLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 423
Query: 712 PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L S K + + + + + D G+Y+ A+N++GS T +T+
Sbjct: 424 ELRSGKKYKIMSENFLTSIHILNV-DSADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 174 bits (443), Expect = 1e-46
Identities = 102/582 (17%), Positives = 180/582 (30%), Gaps = 182/582 (31%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
+ A N++G + + V+ + + P LKD V EC ++G
Sbjct: 75 EYTCKAENSVGA--VASSAVLVIKERKL---PPSFARKLKDVHETLGFPVAFECRINGSE 129
Query: 173 TPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
+ WYKD L+K ++ +NVA ++ +S G+Y C A+N GTA +S L
Sbjct: 130 PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Query: 230 LVQ------------------------------------------GKEIKESARHIITAR 247
+ +EI+ + +T
Sbjct: 190 TLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV 249
Query: 248 GTQRKLVIKRVTQDDE------------TDIGVLALNVKSVSKLKWLARWTSDLESTAWF 295
L + +VT+ D D L V+
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------------------- 289
Query: 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHII 354
F+ KL +V ++ ++ SP+I+V W K EI+ES++ +
Sbjct: 290 ---------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM 340
Query: 355 TSRGTQRKLVIKRVTQDDETDIGVLA------------LNVKS----VSKLKWLDFGSGG 398
+ + L + ++ +D D A L VK K ++ G
Sbjct: 341 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 400
Query: 399 -----------------WWFESKYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRY 438
W +KD + K I EN + ++N + G Y
Sbjct: 401 DVHLECELQGTPPFQVSW-----HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455
Query: 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498
CKA+N+ G+ ++
Sbjct: 456 QCKASNDVGSDTC------------------------------------------VGSIT 473
Query: 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI-TDSKACRI 557
+++PP+ L V + +++ G ++W K+ EI +S I
Sbjct: 474 LKAPPR------FVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWI 527
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
E +T+ A+ YT N AG+ +L VL
Sbjct: 528 SYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 166 bits (421), Expect = 9e-44
Identities = 109/544 (20%), Positives = 181/544 (33%), Gaps = 126/544 (23%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD---TPEIV-GRS 56
+ + A+L I K + D+G+YT N++G +++ + + P + V
Sbjct: 56 FKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETL 115
Query: 57 DSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
V R G P+ G +L+ + T ++ + H
Sbjct: 116 GFPVAFECRIN---GSEPLQVSWYKDGELLKDDANLQT----SFIHNVATLQILQTDQSH 168
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
+ +A N +GT AS + + + + V P S T +C V+G
Sbjct: 169 VGQYNCSASNPLGT--ASSSAKLTLSEHEV---PPFFDLKPVSVDLALGESGTFKCHVTG 223
Query: 171 VPTPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSC 227
I W KD+ I+ +T N A TV+ ++ G+YTC A+N AG S
Sbjct: 224 TAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283
Query: 228 TLLVQ----------------------------------------GKEIKESARHIITAR 247
L VQ EI+ES++ ++
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 343
Query: 248 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVE 307
+ L + ++ +D D A N S+ + K P
Sbjct: 344 ESVAVLEMYNLSVEDSGDYTCEAHNA------------AGSASSST---SLKVKEPP--V 386
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366
F K V + D + EL +P QV W K +E++ ++ I S + I
Sbjct: 387 FRKKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL 445
Query: 367 RVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG------------ 398
V D +D V ++ +K+ V KL + G
Sbjct: 446 NVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAE 505
Query: 399 -----WWFESKYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449
W +KD I I+Y N+A ++ G+YTC+ NEAGT
Sbjct: 506 PISVAW-----FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQ 560
Query: 450 ETRT 453
E
Sbjct: 561 ECFA 564
Score = 114 bits (288), Expect = 7e-27
Identities = 59/246 (23%), Positives = 89/246 (36%), Gaps = 32/246 (13%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP----GAPDTPEIVGRS 56
E A L + +D GDYT NA G AS++T + + P + G
Sbjct: 342 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKG-- 399
Query: 57 DSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
+ V L G P L S K + M E T+ + + +
Sbjct: 400 -ADVHLECEL---QGTPPFQVSWHKDKRELRSGKKYKIMS----ENFLTSIHILNVDSAD 451
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
++ A N +G+ + +KAP P + L D V L+ + G
Sbjct: 452 IGEYQCKASNDVGS---DTCVGSITLKAP-----PRFVKKLSDISTVVGEEVQLQATIEG 503
Query: 171 VPTPDIKWYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
+ W+KD I I+Y N+A ++ G+YTC+ NEAGT E
Sbjct: 504 AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563
Query: 227 CTLLVQ 232
TL V
Sbjct: 564 ATLSVL 569
Score = 91.0 bits (226), Expect = 3e-19
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 10/135 (7%)
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 698
+ AENSVG + + P F + ++ + ++
Sbjct: 76 YTCKAENSVG---AVASS-----AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRING 127
Query: 699 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758
S + W+++ + L + F L++ + D G Y A+N LG+A+
Sbjct: 128 SEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS-HVGQYNCSASNPLGTASSS 186
Query: 759 ARVTVDVEKVGRPSI 773
A++T+ +V P
Sbjct: 187 AKLTLSEHEV-PPFF 200
Score = 83.7 bits (207), Expect = 7e-17
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
+ P FIE E I L KV +P I W++ + L S+P + F L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ + D D G+Y A N +G+ A + + K+ PS
Sbjct: 64 VINKVDHS-DVGEYTCKAENSVGAVASSAVLVIKERKL-PPSF 104
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 166 bits (421), Expect = 6e-43
Identities = 103/842 (12%), Positives = 203/842 (24%), Gaps = 215/842 (25%)
Query: 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE------IVGRSDS 58
TLTI K D G Y + V +P + I +
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNK 144
Query: 59 SVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
+V + + V+ + + + + + M A
Sbjct: 145 TVVIPCLGS--ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEA 202
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
+ VVV V+ P + L C I +
Sbjct: 203 KINDES--YQSIMYIVVVVGY--RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 258
Query: 179 YKDDSLIKGR-------------NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
+ K + + ++ T+ + S +G YTC A++ T +
Sbjct: 259 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 318
Query: 226 SCTLLVQGKEIKE----------------------------------------SARHIIT 245
S + V K + H I
Sbjct: 319 STFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK 378
Query: 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305
A L I V++ D + V+ N S K + P
Sbjct: 379 AGHV---LTIMEVSERDTGNYTVILTNPISKEKQSHVVS-------------LVVYVPPQ 422
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELSS--PDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
+ S + V + T + + P + W + +E + S
Sbjct: 423 IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPC 482
Query: 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVA 423
R + F+ K + + N
Sbjct: 483 EEWRSVE-----------------------------DFQGGNKIEVNKNQFALIEGKNKT 513
Query: 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQK 483
T+V + + Y C+A N+ G E
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGE--------------------------------- 540
Query: 484 LAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWM 543
R + + P+ + + + + + ++W
Sbjct: 541 ---------RVISFHVTRGPEI-------TLQPDMQPTEQESVSLWCTADRSTFENLTWY 584
Query: 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYII 603
K G + + + ++ + S T
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNST----------------------- 621
Query: 604 QQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
+ ++ +L+D+ +Y A++ + +
Sbjct: 622 --NDILIMELKNA-------------SLQDQGDYVCL--AQDRKTKKRHCVVRQLTV--- 661
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
AP E +T +I + +P P I+WF++N+ L+ +
Sbjct: 662 ----LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVL 715
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHV 783
N L ++ E D G Y A + LG A A ++ G +++ +H
Sbjct: 716 KDGNRNLTIRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIE----GAQEKTNLERTHHHH 770
Query: 784 HY 785
H+
Sbjct: 771 HH 772
Score = 150 bits (379), Expect = 1e-37
Identities = 81/662 (12%), Positives = 167/662 (25%), Gaps = 115/662 (17%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP------------ 50
+ TI + G + + ++ D
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 239
Query: 51 -------EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
+ + +W P ++++ +T +
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG-----SEMKKFLSTLTI 294
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT 163
+T + ++ AA + + T ++T V + P A V
Sbjct: 295 DGVTRSDQGLYTCAASSGLMT--KKNSTFVRVHEKPF---VAFGSGMESLVEATVGERVR 349
Query: 164 LECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
+ G P P+IKWYK+ ++ + +V T++ SE G YT TN
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTNPISKE 407
Query: 224 ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283
+ S + + + + + + + + + W
Sbjct: 408 KQSHVVSLVVYVPPQIGEKSLISP-------VDSYQYGTTQTLTCTVYAIPPPHHIHWYW 460
Query: 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKG 343
+ + + + P E+ S + + + V L
Sbjct: 461 QLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ 520
Query: 344 K----------------EIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVS 387
+ +T + T+ + + A +
Sbjct: 521 AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADR-STFE 579
Query: 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARF----------TVVNCSESSEGR 437
L W G + K + ++ N F + N S +G
Sbjct: 580 NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGD 639
Query: 438 YTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497
Y C A +
Sbjct: 640 YVCLAQDRKTKKRH------------------------------------------CVVR 657
Query: 498 QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI 557
Q+ + + NL++Q S+ +V G P P+I W K+ + + I
Sbjct: 658 QLTVLERVAPT--ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GI 713
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVA 617
+ + + I V + D YT A + G ++ + G QEK +L+ T
Sbjct: 714 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA----QEKTNLERTHHH 769
Query: 618 TL 619
Sbjct: 770 HH 771
Score = 129 bits (326), Expect = 3e-31
Identities = 90/676 (13%), Positives = 173/676 (25%), Gaps = 160/676 (23%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
++ A G S V + P + +++ + C G
Sbjct: 11 LWLCVETRAASVGLPS-----------VSLDLPRLSIQKDILTIKANTTLQITC--RGQR 57
Query: 173 TPDIKWYKDDSLIKGRNITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
D W + S + R E + T+ + G Y C +
Sbjct: 58 DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117
Query: 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSD 288
+ I + Q +V ++ V+ S+
Sbjct: 118 VQDYRSP-------FIASVSDQHGVVYITENKNKTV---VIPCLGSI-----------SN 156
Query: 289 LESTAWFWWFESKSTPAVEFLSKLPSVTLV---PHLGDA---------TFQVELSSPDIQ 336
L + + E + P +S + A + S I
Sbjct: 157 LNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216
Query: 337 VKWLKKGKEIKESARHIIT-SRGTQRKLVIK-RVTQDDETDIGVLALNVKSVSKLKWLDF 394
V + ++ S H I S G KLV+ + I +
Sbjct: 217 VVVGYRIYDVVLSPSHGIELSVG--EKLVLNCTARTELNVGI-------------DFNWE 261
Query: 395 GSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
K + L + ++ T+ + S +G YTC A++ T +
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN--- 318
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
+T +++ P +
Sbjct: 319 ---------------------------------------STFVRVHEKPF---VAFGSGM 336
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+V + ++ KY G+P PEI W KNG + + + + I V
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSER 391
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
DT YTV TN + ++ Y+ + +L V++ +
Sbjct: 392 DTGNYTVILTNPISKEKQSHVVSLVVYV-------------PPQIGEKSLISPVDSYQYG 438
Query: 635 SEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE----RFEEKTVKEKGTI 690
+ P P I EE + +
Sbjct: 439 TTQTLTCTVY----------------------AIP--PPHHIHWYWQLEEECANEPSQAV 474
Query: 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN-IILELKEADSETDAGDYKVVAT 749
+ S+ F+ + + + + +G+N + L + + YK A
Sbjct: 475 SVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAV 533
Query: 750 NELGSATHGARVTVDV 765
N++G V
Sbjct: 534 NKVGRGERVISFHVTR 549
Score = 122 bits (307), Expect = 8e-29
Identities = 46/256 (17%), Positives = 87/256 (33%), Gaps = 28/256 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ T+V Y N +G+ + P P++ SV+
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVS 568
Query: 62 LH------------WRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTSTTYEVTKLT 107
L W G + K+ +W N +++T ++ +
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628
Query: 108 TKH-------EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
K+ +Y+ A + R + V AP I L++
Sbjct: 629 LKNASLQDQGDYVCL--AQDRKTKKRHCVV-RQLTVLER---VAPTITGNLENQTTSIGE 682
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S+ + C SG P P I W+KD+ + I ++ T+ + EG YTC+A +
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 220 AGTAETSCTLLVQGKE 235
G A+ +++G +
Sbjct: 743 LGCAKVEAFFIIEGAQ 758
Score = 96.4 bits (239), Expect = 1e-20
Identities = 59/456 (12%), Positives = 114/456 (25%), Gaps = 114/456 (25%)
Query: 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438
L + + L WL W ++ + ++ + T+ + G Y
Sbjct: 49 LQITCRGQRDLDWL-------WPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAY 101
Query: 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498
C + Y +
Sbjct: 102 KCFYRETDLASVIYV------------------------------------YVQDYRSPF 125
Query: 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF 558
I S Q + + N K++ + + + + D RI
Sbjct: 126 IASVSDQHGVVYITEN-KNKTVVIP----CLGSISNLNVSLCARYPEKRFVPDGN--RIS 178
Query: 559 IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV-LGYIIQQQEKNSLKFTKV- 616
D + I S + + A S + + V +GY I + ++
Sbjct: 179 WDSK-KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 237
Query: 617 ----ATLD---------------------PSTLQYTVENLRDKSEYYFQVF--------- 642
L+ + +L+ +S + F
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 643 -----------AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691
A + + + +T + + +R
Sbjct: 298 TRSDQGLYTCAASSGLMTK-KNSTFV-------RVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751
+ AK P P I W++N PL S+ + +L + E SE D G+Y V+ TN
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEV-SERDTGNYTVILTNP 403
Query: 752 LGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLA 787
+ V++ V P I + Y
Sbjct: 404 ISKEKQSHVVSLVVY--VPPQIGEKSLISPVDSYQY 437
Score = 81.7 bits (201), Expect = 4e-16
Identities = 34/387 (8%), Positives = 79/387 (20%), Gaps = 113/387 (29%)
Query: 436 GRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495
+ C T A + P
Sbjct: 10 ALWLCVETRAASVGL------------------PSVSLDLP------------------- 32
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC 555
++ IK + +++ G + W N +
Sbjct: 33 --RLSIQKDILTIKANTT--------------LQITCRGQRDLDWLWPNNQSGSEQRVEV 76
Query: 556 RIFIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLK 612
D T+ I V+ DT Y ++ + + +Q +I +++ +
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 613 FTKVATLDPSTLQ-----------------------------------YTVENLRDKSEY 637
+ + +T+ +
Sbjct: 137 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 196
Query: 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK 697
A+ + ++ + + + + + L +
Sbjct: 197 MVFCEAKINDE-------SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
Query: 698 ASPAPSIVWFRNNKPLLSSPKKREIFDG----------ENIILELKEADSETDAGDYKVV 747
I + KK D L + D G Y
Sbjct: 250 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS-DQGLYTCA 308
Query: 748 ATNELGSATHGARVTVDVEKVGRPSIN 774
A++ L + + V V +P +
Sbjct: 309 ASSGLMTKKNSTFVRV----HEKPFVA 331
Score = 77.1 bits (189), Expect = 1e-14
Identities = 25/224 (11%), Positives = 64/224 (28%), Gaps = 21/224 (9%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPG-APDTPEIVGRSDSSVTLHWRPPQDDGHSPV 75
+ + + A + L P + + ++++++ + R G +
Sbjct: 8 AVALWLCVETRAASVGLPSVS---LDLPRLSIQKDILTIKANTTLQITCR-----GQRDL 59
Query: 76 T----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
S + E + T + K+ ++ S
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKT-LTIPKVIGNDTGAYKCFYRETDLA---SVIY 115
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS---LIKGR 188
YV + Q + +V + C+ S + + G
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 189 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
I++++ FT+ + S G C+A + ++ ++V
Sbjct: 176 RISWDSK-KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
Score = 57.8 bits (139), Expect = 1e-08
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 8/119 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-I 729
P + + T+K T+++ + +W N + E DG
Sbjct: 30 DLPRLSIQKDILTIKANTTLQI--TCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT 87
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLAQ 788
L + + D G YK ++ V P I S+ V+
Sbjct: 88 LTIPKV-IGNDTGAYKCFYRETDLASVIYVYVQD----YRSPFIASVSDQHGVVYITEN 141
Score = 39.4 bits (91), Expect = 0.005
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP 50
+++ + LTI + +D G YT + LG A + A +
Sbjct: 715 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 764
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 147 bits (372), Expect = 2e-39
Identities = 54/363 (14%), Positives = 102/363 (28%), Gaps = 91/363 (25%)
Query: 405 YKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463
YKD+ I +++ + + S+ G Y ++ G ++R L +V
Sbjct: 42 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR-------LKLV 94
Query: 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523
+ + ++ A+ D ++S ++
Sbjct: 95 D-------EAFKEL---------------------MMEVCKKIALSATDLKIQSTAEGIQ 126
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
V +++W NG+ I S + + E + I D Y +
Sbjct: 127 LYSFVTY---YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 584 TNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFA 643
+ + L Y E LK
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLK------------------------------- 212
Query: 644 ENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 703
A + +A + + T++E + L V P P
Sbjct: 213 -------------------QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 704 IVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
+ W +N K L S F+ G + + D+G Y +V N+ GS T V+
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVS 312
Query: 763 VDV 765
V +
Sbjct: 313 VFI 315
Score = 118 bits (298), Expect = 2e-29
Identities = 47/288 (16%), Positives = 80/288 (27%), Gaps = 59/288 (20%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIK-GRNITYENNVARFT 200
P E L V G + +V L+C V+ + I WYKD+ I +++ +
Sbjct: 6 TGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 64
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQG-KEIKESARHIITARGTQRK------- 252
+ S+ G Y ++ G ++ L+ + KE+ I T K
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 253 -----------------------------------------LVIKRVTQDDETDIGVLAL 271
L I T +D+ +
Sbjct: 125 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 184
Query: 272 N----VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQ 327
+ + L A + E ++ A L LP V +
Sbjct: 185 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA-RVLGGLPDVVTIQEGKALNLT 243
Query: 328 VELS-SPDIQVKWLKKGKEIKESARHIIT-SRGTQRKLVIKRVTQDDE 373
+ P +V WLK K + + G I V+ D
Sbjct: 244 CNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Score = 110 bits (277), Expect = 1e-26
Identities = 48/262 (18%), Positives = 94/262 (35%), Gaps = 27/262 (10%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
++ TL I +F KD G Y + L + G+ + K+ + + S +
Sbjct: 56 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115
Query: 60 VTLHWRPPQDDGHSPVTGYVLE-----SHDKDEFMVWNKIETTST----TYEVTKLTTKH 110
+ + +S VT YV + SH+ ++++T T ++ + T
Sbjct: 116 LKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPND 175
Query: 111 EYMFRVAAVNAIGT----------GPASHNTRYVVVKAPVDAE---APVIQEPLKDSVAG 157
+ + + + + +K AE A V+
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYE-NNVARFTVVNCSESSEGRYT 213
++ L C V G P P++ W K++ + N+ +E A FT+ S + G+Y
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 214 CKATNEAGTAETSCTLLVQGKE 235
N+ G+ + T+ V E
Sbjct: 296 LVVKNKYGSETSDFTVSVFIPE 317
Score = 109 bits (273), Expect = 3e-26
Identities = 44/322 (13%), Positives = 86/322 (26%), Gaps = 73/322 (22%)
Query: 322 GDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------ 373
+ +V + + W K +EI +H L+I ++ D
Sbjct: 22 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT--LLITEFSKKDAGIYEVI 79
Query: 374 ------TDIGVLALNVKSV---------------SKLKWLDFGSGGWWFESK-------- 404
D L L ++ + LK G +
Sbjct: 80 LKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLK 139
Query: 405 ---YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
+ S I+ R + + + +G+Y + + + +
Sbjct: 140 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-----V 194
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
LS + + +K + P
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARV----------LGGLP------------DVV 232
Query: 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTS 577
+ + +G P PE+SW+KN + C + + T+ I V AD+
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSG 292
Query: 578 TYTVTATNAAGSTSLDLSLQVL 599
Y + N GS + D ++ V
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVF 314
Score = 72.3 bits (177), Expect = 8e-14
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGEN 727
P P F+E + V + + L KV IVW+++ + + S ++ F
Sbjct: 4 PFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGI 60
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + E + DAG Y+V+ ++ G ++ +
Sbjct: 61 CTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDEA 97
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 139 bits (352), Expect = 5e-37
Identities = 57/299 (19%), Positives = 108/299 (36%), Gaps = 56/299 (18%)
Query: 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID 560
+PP D S L++ + G +I+W K+ EI ++ +
Sbjct: 4 APPF------FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV 57
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQE----------- 607
E T+T+ + V + D YT A+N AG S L V I++ E
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 117
Query: 608 -----------------------KNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644
+ S KF + L+ ++ D +Y A
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY--TCEAH 175
Query: 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 704
N+ G ++T L P+F ++ + + L +++ +P +
Sbjct: 176 NAAGSA-SSSTSLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQV 224
Query: 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
W ++ + L S K + + + + + DS D G+Y+ A+N++GS T +T+
Sbjct: 225 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTCVGSITL 282
Score = 126 bits (319), Expect = 2e-32
Identities = 59/279 (21%), Positives = 89/279 (31%), Gaps = 70/279 (25%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARF 199
P S T +C V+G I W KD+ I+ +T N A
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ--------------------------- 232
TV+ ++ G+YTC A+N AG S L VQ
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 233 -------------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV---LALNVK-S 275
EI+ES++ ++ + L + ++ +D G A N S
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---GDYTCEAHNAAGS 180
Query: 276 VSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPD 334
S L + K P F K V + D + EL +P
Sbjct: 181 ASSSTSL----------------KVKEPP--VFRKKPHPVETLKG-ADVHLECELQGTPP 221
Query: 335 IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
QV W K +E++ ++ I S + I V D
Sbjct: 222 FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
Score = 124 bits (313), Expect = 9e-32
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 32/247 (12%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG--APDTPEIVGRSDS 58
+ E++ATLT++K D G YT SN G+ S + ++ + P P + + D
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDE 115
Query: 59 SVTLHWR-----PPQDDGHSPVT----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK 109
+ + V ++ K + E+ L+ +
Sbjct: 116 HTRYECKIGGSPEIK------VLWYKDETEIQESSKFRM----SFVESVAVLEMYNLSVE 165
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169
+ A NA G+ AS +T + VK P PV ++ + V LEC +
Sbjct: 166 DSGDYTCEAHNAAGS--ASSST-SLKVKEP-----PVFRKKPHPVETLKGADVHLECELQ 217
Query: 170 GVPTPDIKWYKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
G P + W+KD ++ I EN + ++N + G Y CKA+N+ G+
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 227 CTLLVQG 233
++ ++
Sbjct: 278 GSITLKA 284
Score = 111 bits (280), Expect = 2e-27
Identities = 64/332 (19%), Positives = 112/332 (33%), Gaps = 92/332 (27%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
F K SV L TF+ ++ + I++ W K +EI+ + +T L +
Sbjct: 7 FFDLKPVSVDLALG-ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 366 KRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG----------- 398
+VT+ D D L V+ + KL+
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 399 -------WWFESKYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
W YKD++ I+ +++ +VA + N S G YTC+A N AG+
Sbjct: 126 SPEIKVLW-----YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAI 508
A + +T+L+++ PP
Sbjct: 181 ASS------------------------------------------STSLKVKEPPV---- 194
Query: 509 KLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAI 568
+ +E + G P ++SW K+ E+ K +I + ++I I
Sbjct: 195 --FRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 252
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V AD Y A+N GS + S+ +
Sbjct: 253 LNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 105 bits (263), Expect = 3e-25
Identities = 44/214 (20%), Positives = 76/214 (35%), Gaps = 51/214 (23%)
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK 152
+ + T V K+T + A N G S + + + V+ P P + L+
Sbjct: 55 TLVENTATLTVLKVTKGDAGQYTCYASNVAGK--DSCSAQ-LGVQEP-----PRFIKKLE 106
Query: 153 DSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESS 208
S Q EC + G P + WYKD++ I+ +++ +VA + N S
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 209 EGRYTCKATNEAGTAETSCTLLVQ------------------------------------ 232
G YTC+A N AG+A +S +L V+
Sbjct: 167 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSW 226
Query: 233 ---GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
+E++ ++ I + + I V D
Sbjct: 227 HKDKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
Score = 84.0 bits (208), Expect = 7e-18
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P F + + + V + I W ++N+ + + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ + DAG Y A+N G + A++ V
Sbjct: 65 VLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQE 97
Score = 81.7 bits (202), Expect = 4e-17
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFE-EKTVKEKGTIRLMAKVK 697
+ +A N G + + L P FI++ E + VK+ R K+
Sbjct: 76 YTCYASNVAG---KDSCS-AQLGVQE-------PPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 698 ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 757
SP ++W+++ + S K R F +LE+ S D+GDY A N GSA+
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASS 183
Query: 758 GARVTVDV 765
+ V
Sbjct: 184 STSLKVKE 191
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 133 bits (336), Expect = 1e-34
Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 2/149 (1%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ + E KD G Y + N G T ++ + P P ++ S SV
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVN 216
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT-STTYEVTKLTTKHEYMFRVAAVN 120
L W P DG S +T Y++E W ++ T Y V L K Y FRV A N
Sbjct: 217 LTWTEPASDGGSKITNYIVEKCATTA-ERWLRVGQARETRYTVINLFGKTSYQFRVIAEN 275
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQE 149
G S + + K +E
Sbjct: 276 KFGLSKPSEPSEPTITKEDKTRAMNYDEE 304
Score = 118 bits (297), Expect = 2e-29
Identities = 48/288 (16%), Positives = 90/288 (31%), Gaps = 86/288 (29%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
Y+ I + Y + + + + ++ Y +ATN+ G+
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG-------- 90
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T +L+++ P + K ++ + +
Sbjct: 91 ----------------------------------TASLEVEVPAKIHLPKTLE-GMGAVH 115
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTST 578
+++ + G P P I+W K I ++ ++ + TS + V R D
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 579 YTVTATNAAGSTSLDLSLQV-----------------------------------LGYII 603
Y V A N G + L V YI+
Sbjct: 176 YVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV 235
Query: 604 QQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ + ++ +V +YTV NL K+ Y F+V AEN GL
Sbjct: 236 EKCATTAERWLRVGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSK 281
Score = 96.0 bits (239), Expect = 9e-22
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 7/139 (5%)
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
+ +T +++V A N G+ + + V+ P P E + A
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGT---ASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVARFTVVNCSESS-EGRYTCK 215
V+++ SG P P I W K LI + + N E G Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 216 ATNEAGTAETSCTLLVQGK 234
A N G + + L V
Sbjct: 180 AKNRFGIDQKTVELDVADV 198
Score = 94.1 bits (234), Expect = 4e-21
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
A AP +E L++ +QS+ TL C V+G P P +KWY+ I + Y +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + + ++ Y +ATN+ G+ + +L V+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 81.0 bits (200), Expect = 8e-17
Identities = 29/159 (18%), Positives = 45/159 (28%), Gaps = 12/159 (7%)
Query: 615 KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL-VALATHATLGSPGQAP 673
++ Q + ++ D +QV A N G T L V + L P
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHL------P 105
Query: 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 733
+E + + P P I W + + ++ + I L
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165
Query: 734 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
DAG Y V A N G + V P
Sbjct: 166 NGVERKDAGFYVVCAKNRFGIDQKTVELDV----ADVPD 200
Score = 80.2 bits (198), Expect = 1e-16
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 727
AP F E V+ + L+ KV P P + W+R K +++ K I F G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 62 HQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEV 98
Score = 62.5 bits (152), Expect = 1e-10
Identities = 42/210 (20%), Positives = 64/210 (30%), Gaps = 46/210 (21%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESAR--HIITSRGTQRKL 363
F +L ++ + +AT +++ P VKW ++GKEI I +G +L
Sbjct: 6 HFKEELRNLNVRYQ-SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 364 VIKRVTQDDETDIGVLALN------------VKSVSKLKWLDFGSGGWWFESK------- 404
+I VT DD T V A N V+ +K+ G +
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 405 --------------YKDDSLI---KGRNITYENNVARFTVVNCSESS-EGRYTCKATNEA 446
K LI + + N E G Y A N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 447 GTAETRTM-----WPGLPLSIVVSLRKADT 471
G + P P + VS D+
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDS 214
Score = 58.2 bits (141), Expect = 3e-09
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT-DSKACRIFI 559
P L++ + +S + K G P+P + W + G EI D RI
Sbjct: 3 MAPH------FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQE 56
Query: 560 DE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ + I SV D + Y V ATN GS S SL+V
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
Score = 34.0 bits (78), Expect = 0.17
Identities = 29/169 (17%), Positives = 43/169 (25%), Gaps = 26/169 (15%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
+ L I D D Y + +N G S T + + + G
Sbjct: 58 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK----IETTS-----TTYEVTKLTT---- 108
V+ + S D + W K I+ T T L
Sbjct: 118 R---------GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV 168
Query: 109 --KHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
K + V A N G V P + + +DSV
Sbjct: 169 ERKDAGFYVVCAKNRFGI--DQKTVELDVADVPDPPRGVKVSDVSRDSV 215
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 139 bits (352), Expect = 1e-34
Identities = 103/655 (15%), Positives = 183/655 (27%), Gaps = 163/655 (24%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
V L WYK + + R I + + + Y
Sbjct: 15 KEVLLLVHNLPQHLFGYSWYKGERVDGNRQII------GYVIGTQQATPGPAY------- 61
Query: 220 AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279
S R II + L+I+ + Q+D + + V++
Sbjct: 62 -------------------SGREIIYPNAS---LLIQNIIQNDTGFYTLHVIKSDLVNE- 98
Query: 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKW 339
E+T F + P++ + V F E + D W
Sbjct: 99 ----------EATGQFRVYPELPKPSIS----SNNSKPVEDKDAVAFTCEPETQDATYLW 144
Query: 340 LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV---LALNVKSVSKLKW--LDF 394
+ + S R +++ R L + VT++D N S + L+
Sbjct: 145 WVNNQSLPVSPRLQLSNGN--RTLTLFNVTRNDT---ASYKCETQNPVSARRSDSVILNV 199
Query: 395 GSGGWWFESKYKDDSLIKGRNIT---------------YENNVA-----RFTVVNCSESS 434
G + S G N+ + N + N + ++
Sbjct: 200 LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNN 259
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
G YTC+A N +T
Sbjct: 260 SGSYTCQAHNSDTGLN----------------------------------------RTTV 279
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
T + + + P +P I ++ S + + + + W N + S
Sbjct: 280 TTITVYAEPPKPFI----TSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSP- 333
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVLG--YIIQQQEKN-- 609
R+ + + T+ + SV R D Y N S + L VL
Sbjct: 334 -RLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY 392
Query: 610 -----SLKFTKVATLDP--------------STLQYTVENLRDKSEYYFQVFAENSVGLG 650
+L + A +P T + + N+ +K+ + A NS G
Sbjct: 393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSAS-G 451
Query: 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN 710
TT S I K V++K + + +A + +W+ N
Sbjct: 452 HSRTTVKTITV------SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNG 504
Query: 711 KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ L SP+ + N L L + DA Y N + + VT+DV
Sbjct: 505 QSLPVSPRLQLSNG--NRTLTLFNV-TRNDARAYVCGIQNSVSANRSDP-VTLDV 555
Score = 125 bits (316), Expect = 4e-30
Identities = 84/687 (12%), Positives = 157/687 (22%), Gaps = 209/687 (30%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDT---PEIVGRSDSS 59
+A+L I D G YT+ + + AT + + P +
Sbjct: 69 PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128
Query: 60 VTLHWRPPQDDGHSPVT-----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
V P L + ++ + T + +T +
Sbjct: 129 VAFTCEPE---TQDATYLWWVNNQSLPVSPR------LQLSNGNRTLTLFNVTRNDTASY 179
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
+ N + S + V+ P ++ ++ L C + P
Sbjct: 180 KCETQNPVSA-RRSDSVILNVLYGP-----DAPTISPLNTSYRSGENLNLSCHAASNPPA 233
Query: 175 DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ-- 232
W+ + + + + N + ++ G YTC+A N + +
Sbjct: 234 QYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 233 ----------------------------------------GKEIKESARHIITARGTQRK 252
+ + S R ++ R
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDN--RT 343
Query: 253 LVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKL 312
L + VT++D N SV ++ T
Sbjct: 344 LTLLSVTRNDVGPYECGIQNELSVD---HSDPVILNVLYGPDDPTISPSYTYYRP----- 395
Query: 313 PSVTLVPHLG-DATFQVELSS-PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ 370
G + + +S P Q WL G + + ++L I +T+
Sbjct: 396 ---------GVNLSLSCHAASNPPAQYSWLIDGNIQQHT-----------QELFISNITE 435
Query: 371 DDE------------TDIGVLALNVKSVSKLKW------------------LDFGSGG-- 398
+ + ++L
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN 495
Query: 399 ----WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
WW SL + N T+ N + + Y C N + +
Sbjct: 496 TTYLWWV----NGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPV 551
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
L + P P I DS+
Sbjct: 552 T-----------------------------------------LDVLYGPDTPIISPPDSS 570
Query: 515 LKSQ---RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV 571
S LS S P P+ SW NG T + I +
Sbjct: 571 YLSGANLNLSCHSA--------SNPSPQYSWRINGIPQQ-----------HTQVLFIAKI 611
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQV 598
+ TY +N A + + +
Sbjct: 612 TPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 122 bits (308), Expect = 4e-29
Identities = 80/596 (13%), Positives = 154/596 (25%), Gaps = 126/596 (21%)
Query: 61 TLHW-RPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVA 117
W + + DG+ + GYV+ + ++ E + + + + + +
Sbjct: 30 GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLH 89
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
+ + + V + P + +V C
Sbjct: 90 VIKSDLVNEEATGQFRVYPELP-----KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYL 143
Query: 178 WYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE-TSCTLLVQG-- 233
W+ ++ SL + N T+ N + + Y C+ N S L V
Sbjct: 144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGP 203
Query: 234 KEIKESARHIITARG---------------------------TQRKLVIKRVTQDDETDI 266
S + G + ++L I +T ++
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSY 263
Query: 267 GVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATF 326
A N + T+ T + + V
Sbjct: 264 TCQAHNSDTG------LNRTTVTTITV--------YAEPPKPFITSNNSNPVEDEDAVAL 309
Query: 327 QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV--K 384
E + W + + S R +++ R L + VT++D N
Sbjct: 310 TCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSV 367
Query: 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNIT--------------------YENNVAR 424
S L+ G G N++ + +
Sbjct: 368 DHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE 427
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKL 484
+ N +E + G YTC+A N A
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHS---------------------------------- 453
Query: 485 AVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK 544
RTT I + P + +N S+ + K + W
Sbjct: 454 --------RTTVKTITVSAELPKPSISSNN--SKPVEDKDAVAFTCEPEAQNTT-YLWWV 502
Query: 545 NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVL 599
NG + S R+ + T+ +++V R D Y N+ + S ++L VL
Sbjct: 503 NGQSLPVSP--RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 115 bits (288), Expect = 1e-26
Identities = 78/526 (14%), Positives = 139/526 (26%), Gaps = 104/526 (19%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTP--EIVGRSD 57
+ + TLT+ D Y N + S + + +L P AP RS
Sbjct: 159 LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG 218
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---NKIETTSTTYEVTKLTTKHEYMF 114
++ L + P W + ++ + +T + +
Sbjct: 219 ENLNLSCHAA---SNPPAQ------------YSWFVNGTFQQSTQELFIPNITVNNSGSY 263
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
A N+ + T V P + + +V L C T
Sbjct: 264 TCQAHNSDTGLNRTTVTTITVYAEP----PKPFITSNNSNPVEDEDAVALTCEPEIQNTT 319
Query: 175 DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG- 233
+ W + SL + N+ T+++ + + G Y C NE + +L
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY 379
Query: 234 --KEIKESARHIITARGTQ---------------------------RKLVIKRVTQDDET 264
+ S + G ++L I +T+ +
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSG 439
Query: 265 DIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDA 324
A N S T S P + + V
Sbjct: 440 LYTCQANNSA------------SGHSRTTVKTITVSAELP--KPSISSNNSKPVEDKDAV 485
Query: 325 TFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV---LAL 381
F E + + W G+ + S R +++ R L + VT++D
Sbjct: 486 AFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNVTRNDA---RAYVCGIQ 540
Query: 382 NV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYE-------------------- 419
N + S LD G D S + G N+
Sbjct: 541 NSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ 600
Query: 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465
+ + + ++ G Y C +N A SI VS
Sbjct: 601 QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSI-----VKSITVS 641
Score = 100 bits (249), Expect = 6e-22
Identities = 49/417 (11%), Positives = 105/417 (25%), Gaps = 126/417 (30%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
WW + SL + N T+ N + + Y C+ N
Sbjct: 144 WWV----NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR--------- 190
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLK-- 516
++ + L + P P I ++++ +
Sbjct: 191 --------------------------------RSDSVILNVLYGPDAPTISPLNTSYRSG 218
Query: 517 -SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
+ LS + P + SW NG T + I ++ +
Sbjct: 219 ENLNLSCHAA--------SNPPAQYSWFVNGTFQQS-----------TQELFIPNITVNN 259
Query: 576 TSTYTVTATNAAGST--SLDLSLQVLGYIIQQ----------QEKNSLKFTKVATLDPST 623
+ +YT A N+ + ++ V + ++++++ T + +T
Sbjct: 260 SGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT 319
Query: 624 LQYTVEN------------------------LRDKSEYYFQVFAENSVGLGPEATTELVA 659
+ V N D Y + +N + ++ V
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY--ECGIQNELS---VDHSDPVI 374
Query: 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 719
L + + L ++P W + + +
Sbjct: 375 LNVLYG------PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE- 427
Query: 720 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSI 776
L + +E ++G Y A N + T+ V S
Sbjct: 428 ----------LFISNI-TEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473
Score = 86.9 bits (215), Expect = 8e-18
Identities = 65/395 (16%), Positives = 112/395 (28%), Gaps = 89/395 (22%)
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472
GR I Y N A + N ++ G YT E T
Sbjct: 63 GREIIYPN--ASLLIQNIIQNDTGFYTLHVIKSDLVNEEAT------------------- 101
Query: 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532
Q + P+ P + +N S+ + K +
Sbjct: 102 ------------------------GQFRVYPELPKPSISSNN--SKPVEDKDAVAFTCEP 135
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TS 591
W N + S R+ + T+ +++V R DT++Y N + S
Sbjct: 136 ETQD-ATYLWWVNNQSLPVSP--RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRS 192
Query: 592 LDLSLQVLG---YIIQQQEKNSLKFTKVATLD--------------------PSTLQYTV 628
+ L VL S + + L ST + +
Sbjct: 193 DSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFI 252
Query: 629 ENLR--DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686
N+ + Y A NS + T P FI V++
Sbjct: 253 PNITVNNSGSYT--CQAHNSDT-----GLNRTTVTTITVYAEP--PKPFITSNNSNPVED 303
Query: 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746
+ + L + + + +W+ NN+ L SP+ + +N L L + D G Y+
Sbjct: 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQ--LSNDNRTLTLLSV-TRNDVGPYEC 359
Query: 747 VATNELGSATHGARVTVDVEKVGRPSINSIDIDLN 781
NEL + + P+I+
Sbjct: 360 GIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Score = 70.0 bits (171), Expect = 2e-12
Identities = 32/292 (10%), Positives = 67/292 (22%), Gaps = 75/292 (25%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEE----------------TSTIAIYSVVRADTS 577
SW K + + I + +++ I ++++ DT
Sbjct: 25 PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTG 84
Query: 578 TYTVTATNAAGST---SLDLSLQVLG--YIIQQQEKNSLKFTKVATL------------- 619
YT+ + + + I ++
Sbjct: 85 FYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLW 144
Query: 620 ---------------DPSTLQYTVENLR--DKSEYYFQVFAENSVGLGPEATTELVALAT 662
T+ N+ D + Y + +N V +
Sbjct: 145 WVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY--KCETQNPVS---------ARRSD 193
Query: 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 722
L + + + L ++P WF N S+ +
Sbjct: 194 SVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE---- 249
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV-EKVGRPSI 773
L + ++G Y A N T+ V + +P I
Sbjct: 250 -------LFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFI 293
Score = 39.9 bits (93), Expect = 0.003
Identities = 12/108 (11%), Positives = 27/108 (25%), Gaps = 17/108 (15%)
Query: 684 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-------------- 729
V E + L+ W++ + + + +
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 730 --LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
L ++ D G Y + ++ +PSI+S
Sbjct: 71 ASLLIQNIIQN-DTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS 117
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 131 bits (331), Expect = 3e-33
Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 22/235 (9%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
L I D D G Y + +N +G + L P +P +I+ S ++ +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKV 214
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVN 120
+ P G P+ Y ++ + +W + + T + L Y RVAAVN
Sbjct: 215 SFNKPDSHGGVPIHHYQVDVKEVAS-EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVN 273
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD----- 175
G G S + PV +P +S D
Sbjct: 274 GKGQGDYSKIE--IFQTLPVREPSPP-----SIHGQPSSGK---SFKLSITKQDDGGAPI 323
Query: 176 ----IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
+K+ D + + N + + + A N G +E +
Sbjct: 324 LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT 378
Score = 114 bits (288), Expect = 1e-27
Identities = 41/301 (13%), Positives = 74/301 (24%), Gaps = 89/301 (29%)
Query: 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447
++ W G + E D I+ + ++ + + + S GRY C+A + G
Sbjct: 31 EITWKRAVDGFTFTEGDKSLDGRIE---VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87
Query: 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA 507
+ + L I+ P+
Sbjct: 88 GHQK------------------------------------------SMYLDIEYAPK--- 102
Query: 508 IKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI--DEETST 565
SN + + P I W ++ + +
Sbjct: 103 ---FISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 566 IAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG------------------------- 600
+ I D Y TATN G+ + L +
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 601 ----------YIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
Y + +E S + V + + NL + Y +V A N G G
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIWKIVRS-HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Query: 651 P 651
Sbjct: 279 D 279
Score = 92.6 bits (230), Expect = 3e-20
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
S++ + + + A + IG + Y+ ++ P +
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIGG---HQKSMYLDIEYA-----PKFISNQTIYYSW 113
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-----ITYENNVARFTVVNCSESSEGRY 212
+ + + C V P I W +D ++ +N + S++ GRY
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 213 TCKATNEAGTAETSCTLLVQGK 234
C ATN GT L +
Sbjct: 174 NCTATNHIGTRFQEYILALADV 195
Score = 82.9 bits (205), Expect = 5e-17
Identities = 43/246 (17%), Positives = 67/246 (27%), Gaps = 71/246 (28%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P PEI+W + T ++ V + +
Sbjct: 21 VCDAEGEPIPEITWKRAVDGFT-----------------FTEGDKSLDGRIEVKGQHGSS 63
Query: 589 STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
S L V D + A + +G
Sbjct: 64 S---------------------LHIKDVKLSD---------------SGRYDCEAASRIG 87
Query: 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708
G + + L AP FI E I + VK++P SI W R
Sbjct: 88 -GHQKSMYLDIEY----------APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 709 NNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+ L ++ + G +ILE+ D G Y ATN +G+ + +
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN-DFGRYNCTATNHIGTRFQEYILAL--- 192
Query: 767 KVGRPS 772
PS
Sbjct: 193 -ADVPS 197
Score = 78.7 bits (194), Expect = 1e-15
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD---------DSLIKGR-NITYEN 194
P I + K+ VTL C G P P+I W + D + GR + ++
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK-EIKESARHIITARGTQRKL 253
+ + + S GRY C+A + G + S L ++ + + + G +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120
Score = 74.5 bits (183), Expect = 3e-14
Identities = 56/430 (13%), Positives = 111/430 (25%), Gaps = 138/430 (32%)
Query: 311 KLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEI-------KESARHIITSRGTQRK 362
+L + T + G T + P ++ W + R + +
Sbjct: 6 QLKNETTYEN-GQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 363 LVIKRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG-------- 398
L IK V D + L+++ +S G
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 399 ---------WWFESKYKDDSLIKGRN-----ITYENNVARFTVVNCSESSEGRYTCKATN 444
W +D ++ +N + S++ GRY C ATN
Sbjct: 125 KSNPPASIHW-----RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
GT + L + P
Sbjct: 180 HIGTR------------------------------------------FQEYILALADVPS 197
Query: 505 QP-AIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEET 563
P +K+++ + + ++S + + G P + + E+ +
Sbjct: 198 SPYGVKIIELSQTTAKVS----FN-KPDSHG-GVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 564 STIAIYSVVRADTSTYTVTATNAAG-----------------------------STSLDL 594
+ + + ++ T V A N G S L
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL 311
Query: 595 SL--------QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646
S+ +L YI++ + K+ + + +E+L+ Y Q+ A N
Sbjct: 312 SITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANR 371
Query: 647 VGLGPEATTE 656
+G E
Sbjct: 372 LGYSEPTVYE 381
Score = 62.5 bits (152), Expect = 2e-10
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-------FDG 725
P I+ + +T E G + L+ + P P I W R + + +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ L +K+ +D+G Y A + +G + +
Sbjct: 61 GSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLDI 97
Score = 49.4 bits (118), Expect = 3e-06
Identities = 35/261 (13%), Positives = 75/261 (28%), Gaps = 22/261 (8%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSV 60
+ S++L I + D G Y ++ +G + + + AP + +
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 61 TLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
+ + P + VL + K+ + E+ + +
Sbjct: 119 NISCDV---KSNPPASIHWRRDKLVLPA--KNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
A N IGT + P I E + + V+ S P
Sbjct: 174 NCTATNHIGT--RFQEYILALADVPSSPYGVKIIELSQTTA-----KVSFNKPDSHGGVP 226
Query: 175 DIKW---YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ K+ + + + + N ++ A N G + S +
Sbjct: 227 IHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF 286
Query: 232 QGKEIKESARHIITARGTQRK 252
Q ++E + I + + K
Sbjct: 287 QTLPVREPSPPSIHGQPSSGK 307
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 127 bits (321), Expect = 1e-32
Identities = 49/366 (13%), Positives = 99/366 (27%), Gaps = 97/366 (26%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461
KD + + + N + T + G Y+C T+ G A + +
Sbjct: 37 SKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI------- 89
Query: 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521
K P P + + +
Sbjct: 90 ------------------------DEEELKRLLALSHEHKFPTVPVKSELAVEILEKG-Q 124
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS--TIAIYSVVRADTSTY 579
V+ + E +++++ N EI + ++ ID T + + + D TY
Sbjct: 125 VRFWMQAEK---LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 580 TVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
T + + + L + Q+E + +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWI----------------------- 218
Query: 640 QVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 699
Q P F+E + V + + L KV
Sbjct: 219 -----------------------------RKQGPHFVE-YLSWEVTGECNVLLKCKVANI 248
Query: 700 PAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758
IVW+++ + + K F L + E + DAG Y+V+ ++ G
Sbjct: 249 KKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSR 305
Query: 759 ARVTVD 764
++ +
Sbjct: 306 LKLVDE 311
Score = 108 bits (270), Expect = 7e-26
Identities = 42/338 (12%), Positives = 83/338 (24%), Gaps = 79/338 (23%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367
F ++ + F+ + +P + W K ++S R + S+G + K+ K
Sbjct: 5 FTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKD 64
Query: 368 VTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESK----------------------- 404
+ DD + ++ +D
Sbjct: 65 LGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ 124
Query: 405 ------------------YKDDSLIK---GRNITYENNVARFTVV--NCSESSEGRYTCK 441
++ I + + N + + EG YT +
Sbjct: 125 VRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 184
Query: 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501
+ T + VL K Q
Sbjct: 185 LQDGKATNHSTV--------------------------VLVGDVFKKLQKEAEFQRQEWI 218
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFID 560
Q P S ++ + ++ K + I W K+ EI+ + +
Sbjct: 219 RKQGPHF----VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFK 272
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ T+ I + D Y V + G L L
Sbjct: 273 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 106 bits (266), Expect = 2e-25
Identities = 39/262 (14%), Positives = 80/262 (30%), Gaps = 33/262 (12%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKV--------TLLSAPGAPDTPEIV 53
+ + +T DLG Y+ +++ G AS+ L P P
Sbjct: 54 KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS 113
Query: 54 GRSDS-----SVTLHWRPPQDDGHSPVT----GYVLESHDKDEFMVWNKIETTSTTYEVT 104
+ V + + G++ V + K + + T +
Sbjct: 114 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI--DRNTGIIEMFME 171
Query: 105 KLTTKHEYMFRVAAVNAIGTG-----------PASHNTRYVVVKAPVDAEAPVIQEPLKD 153
KL + E + + T + + + P E L
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 154 SVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGR 211
V + +V L+C V+ + I WYKD+ I +++ + + S+ G
Sbjct: 232 EVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGI 290
Query: 212 YTCKATNEAGTAETSCTLLVQG 233
Y ++ G ++ L+ +
Sbjct: 291 YEVILKDDRGKDKSRLKLVDEA 312
Score = 105 bits (264), Expect = 3e-25
Identities = 42/324 (12%), Positives = 96/324 (29%), Gaps = 34/324 (10%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVAR 198
P +E + + S+ EC P + W KD + + + N +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRV 258
T + G Y+C T+ G A + + K + + + + +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 259 TQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTL- 317
+ + + A + +K+ ++ ++ + ++T +E + +
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYI-FNEKEIFEGPKYKMHIDRNTGIIEMF--MEKLQDE 176
Query: 318 ---------VPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368
V L K L+K E + L + V
Sbjct: 177 DEGTYTFQLQDGKATNHSTVVL--VGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-V 233
Query: 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIK-GRNITYENNVARFTV 427
T + + N+K + + W YKD+ I +++ + +
Sbjct: 234 TGECNVLLKCKVANIKKETHIVW-------------YKDEREISVDEKHDFKDGICTLLI 280
Query: 428 VNCSESSEGRYTCKATNEAGTAET 451
S+ G Y ++ G ++
Sbjct: 281 TEFSKKDAGIYEVILKDDRGKDKS 304
Score = 84.7 bits (209), Expect = 6e-18
Identities = 28/274 (10%), Positives = 66/274 (24%), Gaps = 70/274 (25%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPV------IQEPLKDSVAGFQSSVTLEC 166
++ + G +S+ +K + ++ L +
Sbjct: 72 IYSCDVTDTDGI-ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130
Query: 167 VVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVV--NCSESSEGRYTCKATNEAG 221
+ + ++ I + + N + + EG YT + +
Sbjct: 131 AEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA 190
Query: 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281
T T+++ G K+
Sbjct: 191 TNH--STVVLVGDVFKK------------------------------------------- 205
Query: 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS--SPDIQVKW 339
L+ A F E F+ L + + +++ + + W
Sbjct: 206 -------LQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE--CNVLLKCKVANIKKETHIVW 256
Query: 340 LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
K +EI +H L+I ++ D
Sbjct: 257 YKDEREISVDEKHDFK--DGICTLLITEFSKKDA 288
Score = 68.9 bits (168), Expect = 9e-13
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 2/104 (1%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G P E ++ +P W ++ SP+ G
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ K+ + D G Y T+ G A+ +++++ S
Sbjct: 60 MTFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102
Score = 40.7 bits (95), Expect = 0.001
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
++ TL I +F KD G Y + L + G+ + K+
Sbjct: 271 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 124 bits (312), Expect = 2e-32
Identities = 38/233 (16%), Positives = 66/233 (28%), Gaps = 52/233 (22%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+++W NG+ I S + + E + I D Y + +
Sbjct: 29 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+ L Y E LK +A
Sbjct: 89 VDLSGQAYDEAYAEFQRLKQAAIA------------------------------------ 112
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+A + + T++E + L V P P + W +N K L
Sbjct: 113 --------------EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 158
Query: 714 LSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ F+ G + + D+G Y +V N+ GS T V+V +
Sbjct: 159 AQTDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVSVFI 210
Score = 94.9 bits (236), Expect = 3e-22
Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 31/199 (15%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461
+ S I+ + + + + +G+Y + + + LS
Sbjct: 38 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD-----LS 92
Query: 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521
+ + +K + P +
Sbjct: 93 GQAYDEAYAEFQRLKQAAIAEKNRARV----------LGGLPD------------VVTIQ 130
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYT 580
+ +G P PE+SW+KN + + C + + T+ I V AD+ Y
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG 190
Query: 581 VTATNAAGSTSLDLSLQVL 599
+ N GS + D ++ V
Sbjct: 191 LVVKNKYGSETSDFTVSVF 209
Score = 89.5 bits (222), Expect = 2e-20
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAE---APVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
V+ G + +K AE A V+ ++ L C V G P
Sbjct: 87 KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP 146
Query: 174 PDIKWYKDDSLIK---GRNITYE-NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
P++ W K++ + N+ +E A FT+ S + G+Y N+ G+ + T+
Sbjct: 147 PEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
Query: 230 LVQGKE 235
V E
Sbjct: 207 SVFIPE 212
Score = 76.4 bits (188), Expect = 6e-16
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 149 EPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGRN---ITYENNVARFTVVNC 204
LK + L V+ V + W + S I+ + +
Sbjct: 9 TDLKIQSTA--EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 66
Query: 205 SESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ + +G+Y + + + + L Q +
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYD 97
Score = 64.9 bits (158), Expect = 5e-12
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 689 TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747
I+L + V + W N + S + + GE I L++ E + D G Y +
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVME 77
Query: 748 ATNELGSATHGARVTVDVEKVGRPSINSID 777
+ ++ +
Sbjct: 78 LFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
Score = 52.9 bits (127), Expect = 6e-08
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 327 QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
V D++V W G I+ S R G Q L I T +D+
Sbjct: 25 FVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71
Score = 36.4 bits (84), Expect = 0.022
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
+ L I + D G Y + L + T ++ + A E +++
Sbjct: 55 TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAY--AEFQRLKQAAIA 112
Query: 62 LHWRPP 67
R
Sbjct: 113 EKNRAR 118
Score = 34.5 bits (79), Expect = 0.073
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+A TI D G Y + + N G ++ V+
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 123 bits (309), Expect = 6e-32
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 8/147 (5%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ L + + D G+Y + N +GQ S + P +P + V S+
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ-VEPYSSTAQ 130
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFM---VWNKIETTS--TTYEVTKLTTKHEYMFRV 116
+ + P+ G P+ Y E E + W + S + L + Y R+
Sbjct: 131 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 190
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAE 143
AA+N G G S + PV E
Sbjct: 191 AALNGKGLGEISAASE--FKTQPVQGE 215
Score = 91.4 bits (227), Expect = 4e-21
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 39/162 (24%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFI--DEETSTIAIYSVVRADTSTYTVTATNA 586
+ F +P ISW ++G + S I I S + + D Y TA N
Sbjct: 39 TCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNR 98
Query: 587 AGSTSLDLSLQV----------------------------------LGYIIQQQEKNSLK 612
G SL+ L L Y + +
Sbjct: 99 IGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV 158
Query: 613 FTKV---ATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ A T+ L+ ++ Y ++ A N GLG
Sbjct: 159 WHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGE 200
Score = 82.6 bits (204), Expect = 6e-18
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---- 189
+V AP +Q P + V + C V P+ I W++D L+ N
Sbjct: 9 ALVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNI 67
Query: 190 -ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
I + + V SE+ G Y C A N G L+
Sbjct: 68 KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
Score = 74.1 bits (182), Expect = 5e-15
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENI- 728
++ E + + +V A P+ +I WFR+ + L SS +I++ +
Sbjct: 17 MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
LE+ D G+Y A N +G + + + PSI+ ++
Sbjct: 77 YLEVTPDSEN-DFGNYNCTAVNRIGQESLEFILVQ-ADTPSSPSIDQVEP 124
Score = 38.7 bits (90), Expect = 0.003
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 405 YKDDSLIKGRN-----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
++D L+ N I + + V SE+ G Y C A N G
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESL 104
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 116 bits (293), Expect = 5e-31
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 28 ALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE 87
+ G + A+ + ++ PG P +I +V L W PP+DDG++ +TGY ++ DK
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS 61
Query: 88 FMVWNKIETT--STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
M W + T+ +T+L +EY FRV + N G + T+ V A
Sbjct: 62 -MEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIAR 114
Score = 57.0 bits (138), Expect = 4e-10
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP--EATT 655
+ GY IQ+ +K S+++ V T+ L +EYYF+VF+EN GL T
Sbjct: 49 ITGYTIQKADKKSMEWFTVIE-HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTK 107
Query: 656 ELVALATHATL 666
E +A +
Sbjct: 108 ESAVIARDGKI 118
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 114 bits (287), Expect = 3e-30
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P + +D++VT+ WRPP G + + GYVLE ++++V NK T
Sbjct: 6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKT 65
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+ +T L T + RV AVNA G + ++ ++VK +
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPS 108
Score = 55.4 bits (134), Expect = 1e-09
Identities = 8/54 (14%), Positives = 23/54 (42%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ GY+++ + + + ++T+ L ++ + +V A N+ G
Sbjct: 39 LDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASE 92
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 112 bits (282), Expect = 1e-29
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTT 100
AP + +D++ TL WRPP G + GY++E +E++ NK
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+ V L T +FRV VN G + + V ++ +
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPS 109
Score = 59.3 bits (144), Expect = 6e-11
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ GY+++ + S ++ +TV++L + F+V N G
Sbjct: 40 IDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSE 93
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 112 bits (281), Expect = 2e-29
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 31 QASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV 90
S+ L PG P P++ + +SVTL W+P G P + Y++E+ +
Sbjct: 3 SGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNS 61
Query: 91 WNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
W + +T Y V L Y+F V A+N G S + V +
Sbjct: 62 WQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113
Score = 53.5 bits (129), Expect = 6e-09
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
YII+ ++ + T YTV LR + Y F V A N GL
Sbjct: 46 ASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSD 99
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 112 bits (281), Expect = 3e-29
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + + LS P APD P I S++SV + W P +G P+ + +E +
Sbjct: 4 GSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVG 62
Query: 90 VW----NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
W + I + + E+T L Y FRV A+N +G S +R VV +
Sbjct: 63 DWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSSG 121
Score = 48.5 bits (116), Expect = 4e-07
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVAT--LDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ + ++ ++ + +AT + PS L + L Y F+V A N +G
Sbjct: 48 IQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESE 103
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 119 bits (299), Expect = 6e-29
Identities = 57/516 (11%), Positives = 129/516 (25%), Gaps = 160/516 (31%)
Query: 123 GTGPASHNTRYVVVKAPVDA------EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI 176
+ ++ +V ++P D ++ +S+TL+ +V
Sbjct: 21 DSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISC 80
Query: 177 KWYKDDSLIKGRNI--TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
W S + + V ++ +E+ G Y +EA T+ ++
Sbjct: 81 LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Query: 235 EIKESARHIITARGTQRKLVI----------------KRVTQDDETDIGVLALNVKSVSK 278
+ R Q LV + E V+ K + +
Sbjct: 141 LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200
Query: 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS------- 331
L +D+ A ++L ++ L Q+ L
Sbjct: 201 LF-----GTDIRCCA--------RNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 332 -------SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384
+ + W + K ++E +++ T R T I +L V
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR------------TMIRILFAFVS 295
Query: 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444
SV++ +D+ G YTC ++
Sbjct: 296 SVAR------------------NDT--------------------------GYYTCSSSK 311
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
++ + I
Sbjct: 312 HPS---------------------------------------------QSALVTIVEKGF 326
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
I +S+ + + ++ V++ +P+ +W + +
Sbjct: 327 ---INATNSS-EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE----QKGLDNGY 378
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+I+ + + Y A N + +L +
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Score = 94.4 bits (234), Expect = 1e-20
Identities = 33/318 (10%), Positives = 84/318 (26%), Gaps = 63/318 (19%)
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
L+ QS + + V + ++V W+ + +
Sbjct: 42 CALRPQSSG-------TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQE----- 607
+ + ++ I + Y + + A + ++ ++ + ++
Sbjct: 95 FDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKM 153
Query: 608 KNSLKFTKVATLDP---------------------STLQYTVENLRDKSEYYFQVFAENS 646
+N ++ P + ++ + L + + A N
Sbjct: 154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213
Query: 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK-VKASPAPSIV 705
+G T L + + +K + + K V + +
Sbjct: 214 LG---RECTRLFTID---------LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261
Query: 706 WFRNNKPLLSSPKKR------EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759
W NK L + + + D G Y ++ + A
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV-ARNDTGYYTCSSSKHPSQS---A 317
Query: 760 RVTVDVEKVGRPSINSID 777
VT+ V + IN+ +
Sbjct: 318 LVTI----VEKGFINATN 331
Score = 92.0 bits (228), Expect = 7e-20
Identities = 47/393 (11%), Positives = 104/393 (26%), Gaps = 90/393 (22%)
Query: 399 WWFESKYKDDSLIKGRNITYENN-VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
W F+ SL + +N V ++ +E+ G Y +EA
Sbjct: 82 WVFK----HSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-------- 129
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
T + I++ L +
Sbjct: 130 ----------------------------------TILFTVSIRNTLL---YTLRRPYFRK 152
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+++Q + P P + W+ ++ K + ++ + + +
Sbjct: 153 ----MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV----LHELFGT 204
Query: 578 TYTVTATNAAG-STSLDLSLQVLGYIIQQQEKNSLKFTKVATLD--------PSTLQYTV 628
A N G + ++ + + LK + + L + +
Sbjct: 205 DIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL 264
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG--------SPGQA-------P 673
EN + YF++ ++ V+ G P Q+
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEK 324
Query: 674 LFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
FI + + + KA P W + K ++ + +G +I
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE--QKGLDNGYSISK 382
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + G+Y A N+ T + +
Sbjct: 383 ---FCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 91.7 bits (227), Expect = 1e-19
Identities = 23/228 (10%), Positives = 49/228 (21%), Gaps = 24/228 (10%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
D N LG+ L+ P++ + + + + +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAV--HVNHGFG 259
Query: 77 ------GYVLESHDKDEFMVW--NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
LE + E + N+ V+ + + ++
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---- 315
Query: 129 HNTRYVVVKAPVDAEAPVIQ--EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK 186
+ V + I +D P W
Sbjct: 316 --SALVTIVEK-----GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP 368
Query: 187 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+N + + G Y A N+ TL ++
Sbjct: 369 CEQKGLDNG-YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 90.5 bits (224), Expect = 2e-19
Identities = 25/244 (10%), Positives = 64/244 (26%), Gaps = 27/244 (11%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++ I+K + G+Y + + + + V++ + + ++
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVN 120
L + + + E +V + R A N
Sbjct: 158 ALVCIS---ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDI--RCCARN 212
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWY 179
+G + + Q L + + C V + W
Sbjct: 213 ELGR--ECTRLFTIDL-------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWE 263
Query: 180 KDDSLIK-GRNITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAETSCTLL 230
++ ++ G T++ + + + G YTC ++ S +
Sbjct: 264 LENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVT 320
Query: 231 VQGK 234
+ K
Sbjct: 321 IVEK 324
Score = 80.5 bits (198), Expect = 4e-16
Identities = 30/303 (9%), Positives = 65/303 (21%), Gaps = 81/303 (26%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
+ + V ++ + ++ L C+ VP P ++
Sbjct: 122 IQSEATN--YTILFT-VSIRNT-----LLYTLRRPYFRKM-ENQDALVCISESVPEPIVE 172
Query: 178 WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ----- 232
W DS + V + V E C A NE G T +
Sbjct: 173 WVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARNELGRECTRLFTIDLNQTPQ 231
Query: 233 ----------------------------------GKEIKESARHIITARGTQR------K 252
K ++E ++ T R
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 253 LVIKRVTQDDETDIGVLALN-VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK 311
+ V ++D + + + + + + +
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQSALVTIVEK-------------------GFINATNS 332
Query: 312 LPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ 370
+ + + F V P I+ W K + + + +
Sbjct: 333 SEDYEIDQY-EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNG----YSISKFCNHK 387
Query: 371 DDE 373
Sbjct: 388 HQP 390
Score = 72.0 bits (176), Expect = 2e-13
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Query: 643 AENSVGLGPEATTELVA--LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 700
N +G ++ +V+ P Q+ + V +I L V A
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGCALRP-QSSGTVYEAAAVEVDVSASITLQVLVDAPG 76
Query: 701 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760
S +W + L P G + + + + +ET AG+Y + +E + T
Sbjct: 77 NISCLWVFKHSSLNCQPHFDLQNRG-VVSMVILKM-TETQAGEYLLFIQSEATNYTILFT 134
Query: 761 VTV 763
V++
Sbjct: 135 VSI 137
Score = 69.3 bits (169), Expect = 2e-12
Identities = 43/344 (12%), Positives = 85/344 (24%), Gaps = 94/344 (27%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+ + +V V T QV + +I W+ K + + +RG +VI
Sbjct: 50 GTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-VSMVI 107
Query: 366 KRVTQDDE------------TDIGVLALNVKSVSKLKW-------------LDFGSGGW- 399
++T+ + +++++ L S
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP 167
Query: 400 -----WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
W DS + V + V E C A NE G TR
Sbjct: 168 EPIVEW----VLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARNELGRECTRL- 221
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
L L++ P
Sbjct: 222 -------------------------FTIDLNQTPQTTLPQLFLKVGEP------------ 244
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIA------I 568
+ + ++W + + + T+ +
Sbjct: 245 ---------LWIRCKAV-HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFV 294
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLK 612
SV R DT YT +++ ++L +++ G+I +
Sbjct: 295 SSVARNDTGYYTCSSSKHPSQSAL-VTIVEKGFINATNSSEDYE 337
Score = 39.3 bits (91), Expect = 0.005
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
++ +++ G+Y N Q + + + S
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 120 bits (302), Expect = 9e-29
Identities = 67/566 (11%), Positives = 140/566 (24%), Gaps = 146/566 (25%)
Query: 123 GTGPASHNTRYVVVKAPVDA------EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI 176
+ ++ +V ++P D ++ +S+TL+ +V
Sbjct: 21 DSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISC 80
Query: 177 KWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
W S + V ++ +E+ G Y +EA T+ ++
Sbjct: 81 LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Query: 235 EIKESARHIITARGTQRKLVIKRVT----------------QDDETDIGVLALNVKSVSK 278
+ R Q LV + E V+ K + +
Sbjct: 141 LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200
Query: 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHL---GDATF---QVELSS 332
L +D+ A + L++ P TL G+ + + +
Sbjct: 201 LF-----GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVN 255
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQR------KLVIKRVTQDDE------------- 373
+ W + K ++E +++ T R + V ++D
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Query: 374 -TDIGVLAL-NVKSVSKLKWLDFGSGG----------------WWFESKYKDDSLIKGRN 415
+ ++ + + + + + W
Sbjct: 316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW----TFSRKSFPCEQ 371
Query: 416 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKP 475
+N + + G Y A N+
Sbjct: 372 KGLDNGY-SISKFCNHKHQPGEYIFHAENDDAQFT------------------------- 405
Query: 476 PMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF 535
+ L I+ PQ V + + + S S G+
Sbjct: 406 -----------------KMFTLNIRRKPQ------VLAEASASQASCFSD--------GY 434
Query: 536 PRPEISWMKNG-----------AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
P P +W K + + KA R + S+ + A
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 585 NAAGSTSLDLSLQVLGY--IIQQQEK 608
N+ G++ + L G IQ
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGT 520
Score = 89.4 bits (221), Expect = 1e-18
Identities = 36/415 (8%), Positives = 89/415 (21%), Gaps = 125/415 (30%)
Query: 405 YKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
S + V ++ +E+ G Y +EA
Sbjct: 83 VFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY------------- 129
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
T + I++ + + +
Sbjct: 130 -----------------------------TILFTVSIRNTLLY-------TLRRPYFRKM 153
Query: 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
++Q + P P + W+ ++ K + + +
Sbjct: 154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV----VKKEEKVLHELFGTDIRCC 209
Query: 583 ATNAAG-STSLDLSLQVLGYIIQQQEKNSLKFTKVATL---------------------- 619
A N G + ++ + + LK + +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 620 ------------------DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661
V ++ Y+ + + +
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFA--FVSSVARNDTGYYTCSSSKHPS----QSALVTI-- 321
Query: 662 THATLGSPGQAPLFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK 718
FI + + + KA P W + K +
Sbjct: 322 ---------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF--PCE 370
Query: 719 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
++ + +G +I + + G+Y A N+ T + + +P +
Sbjct: 371 QKGLDNGYSISKFC---NHKHQPGEYIFHAENDDAQFTKMFTLNIRR----KPQV 418
Score = 89.0 bits (220), Expect = 2e-18
Identities = 61/534 (11%), Positives = 124/534 (23%), Gaps = 152/534 (28%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+ + +V + T QV + +I W+ K + + +RG +VI
Sbjct: 50 GTVYEAAAVEVDVS-ASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV-SMVI 107
Query: 366 KRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGGWWFESK----- 404
++T+ + +++++ + +
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP 167
Query: 405 ------YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
DS + V + E C A NE G
Sbjct: 168 EPIVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFGTDIRCCARNELGRE--------- 217
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
TR + + PQ L
Sbjct: 218 --------------------------------CTRLFTIDLNQTPQTT--------LPQL 237
Query: 519 RLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRI------FIDEETSTIAIYSV 571
L V + K ++W + + + + SV
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNS--------------------- 610
R DT YT +++ ++L +++ G+I
Sbjct: 298 ARNDTGYYTCSSSKHPSQSAL-VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356
Query: 611 ----------LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660
+ + ++ + EY F AEN L
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH--AENDDA-QFTKMFTL--- 410
Query: 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK- 719
+ P + E + P PS W + + + ++
Sbjct: 411 ----NIRRK---PQV--------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI 455
Query: 720 ----------REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
R++F L +++ K A N LG++ +
Sbjct: 456 TEGVWNRKANRKVFGQWVSSSTLNMSEAI-KGFLVKCCAYNSLGTSCETILLNS 508
Score = 87.4 bits (216), Expect = 4e-18
Identities = 24/228 (10%), Positives = 50/228 (21%), Gaps = 24/228 (10%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
D N LG+ L+ P++ + + + + +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAV--HVNHGFG 259
Query: 77 ------GYVLESHDKDEFMVW--NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
LE + E + N+ V+ + + ++
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---- 315
Query: 129 HNTRYVVVKAPVDAEAPVIQ--EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK 186
+ V + I +D P W
Sbjct: 316 --SALVTIVEK-----GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP 368
Query: 187 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+N + + G Y A N+ TL ++ K
Sbjct: 369 CEQKGLDNGY-SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK 415
Score = 84.0 bits (207), Expect = 5e-17
Identities = 30/324 (9%), Positives = 80/324 (24%), Gaps = 62/324 (19%)
Query: 492 TRTTNLQIQSPPQQPAIKL------VDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN 545
++ + P+ L + + V + ++V W+
Sbjct: 26 KSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFK 85
Query: 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YII 603
+ + + + ++ I + Y + + A + ++ ++ +
Sbjct: 86 HSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYT 144
Query: 604 QQQE--------------------------KNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
++ + P+ ++ + L +
Sbjct: 145 LRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGT 204
Query: 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK 697
+ A N +G T L + + + +K + + K
Sbjct: 205 DIRCCARNELG---RECTRLFTIDLN---------QTPQTTLPQLFLKVGEPLWIRCKAV 252
Query: 698 -ASPAPSIVWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGDYKVVATN 750
+ + W NK L + + D G Y ++
Sbjct: 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSK 311
Query: 751 ELGSATHGARVTVDVEKVGRPSIN 774
+ A VT+ V + IN
Sbjct: 312 HPSQS---ALVTI----VEKGFIN 328
Score = 81.7 bits (201), Expect = 3e-16
Identities = 27/243 (11%), Positives = 64/243 (26%), Gaps = 27/243 (11%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ I+K + G+Y + + + + V++ + + ++
Sbjct: 99 NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA 158
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNA 121
L + V + + E L R A N
Sbjct: 159 L---VCISESVPEPI--VEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYK 180
+G + + P P G + + C V + W
Sbjct: 214 LGR--ECTRLFTIDLNQT-----PQTTLPQLFLKVG--EPLWIRCKAVHVNHGFGLTWEL 264
Query: 181 DDSLIKGRNITYEN---------NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
++ ++ N + + V + + + G YTC ++ S + +
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTI 321
Query: 232 QGK 234
K
Sbjct: 322 VEK 324
Score = 72.4 bits (177), Expect = 2e-13
Identities = 34/248 (13%), Positives = 54/248 (21%), Gaps = 41/248 (16%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE---IVGRSDSS 59
+ D G YT S S S + VT++ T
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSK---HPSQSALVTIVEKGFINATNSSEDYEIDQYEE 343
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAV 119
R + + + + F K + + A
Sbjct: 344 FCFSVRF---KAYPQIR--CTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N + + ++ P + S+ C G P P W
Sbjct: 399 NDDAQ--FTKMF-TLNIRRK-----PQVLA------EA--SASQASCFSDGYPLPSWTWK 442
Query: 180 K-------DDSLIKGRNITYENNVARF-------TVVNCSESSEGRYTCKATNEAGTAET 225
K I + N F T+ C A N GT+
Sbjct: 443 KCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCE 502
Query: 226 SCTLLVQG 233
+ L G
Sbjct: 503 TILLNSPG 510
Score = 64.3 bits (156), Expect = 9e-11
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 643 AENSVGLGPEATTELVA-LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 701
N +G ++ +V+ Q+ + V +I L V A
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 702 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
S +W + L P + + + + + + +ET AG+Y + +E + T V
Sbjct: 78 ISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKM-TETQAGEYLLFIQSEATNYTILFTV 135
Query: 762 TV 763
++
Sbjct: 136 SI 137
Score = 53.5 bits (128), Expect = 2e-07
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENII 729
+ L K + L+ ++ P P + W + S ++ + E +
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLN 781
L E D + A NELG T+D+ P + L
Sbjct: 198 L------HELFGTDIRCCARNELGRECTRL-FTIDLN--QTPQTTLPQLFLK 240
Score = 28.5 bits (63), Expect = 9.9
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
S+TL + + N+LG + T + +P + + H
Sbjct: 475 SSTLNMSEAIKG--FLVKCCAYNSLGTSCETILLN------SPGPFPFIQDGGTKHHHH 525
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 110 bits (276), Expect = 9e-29
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
G + T PG P P + G+ S + W PP+D+G + + YV+E +
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 89 MVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
W I + + + +L Y RV ++ G S ++V+ P +
Sbjct: 64 NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTPAVSGPS 118
Score = 48.2 bits (115), Expect = 5e-07
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 598 VLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP----- 651
+ Y+++ E ++ K+ + +T ++ + L Y +V+ + G
Sbjct: 50 INKYVVEMAEGSNGNKWEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 107
Query: 652 EATTELVA 659
T V+
Sbjct: 108 LVQTPAVS 115
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 112 bits (283), Expect = 9e-29
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 47/171 (27%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-----GRNITYEN 194
+ +AP +PL+ V S+ T E +SG P P++ W++D +I G I++ +
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ---------------------- 232
A+ T+ ++++ GRY+ KATN +G A ++ LLV+
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 233 --------------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
G EI+ S I+ G L+I +D
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Score = 103 bits (259), Expect = 2e-25
Identities = 53/249 (21%), Positives = 84/249 (33%), Gaps = 67/249 (26%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L+S + S E GFP PE+SW ++G
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQV-------------------------- 45
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ S I + L V +
Sbjct: 46 -----------------ISTSTLPGVQISFSDGRAKLTIPAV-------------TKANS 75
Query: 635 SEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMA 694
Y + A N G +T EL + + P F++R + TV++ +RL
Sbjct: 76 GRY--SLKATNGSG-QATSTAEL-------LVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 695 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
+V P P + ++R+ + SS + +G+ L + EA E D+G Y V ATN +G
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGR 184
Query: 755 ATHGARVTV 763
AT A + V
Sbjct: 185 ATSTAELLV 193
Score = 102 bits (257), Expect = 3e-25
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
+ + A N G A+ +V P + L+ S V L+ V+G+P
Sbjct: 77 RYSLKATNGSGQ--ATSTAELLVKAETA---PPNFVQRLQSMTVRQGSQVRLQVRVTGIP 131
Query: 173 TPDIKWYKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
TP +K+Y+D + I+ I+ E ++ + G Y+ ATN G A ++ L
Sbjct: 132 TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Query: 230 LVQ 232
LVQ
Sbjct: 192 LVQ 194
Score = 93.2 bits (232), Expect = 6e-22
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 50/199 (25%)
Query: 405 YKDDSLIK-----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
++D +I G I++ + A+ T+ ++++ GRY+ KATN +G A +
Sbjct: 40 FRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS-------- 91
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T L +++ P L+S
Sbjct: 92 ----------------------------------TAELLVKAETAPPNFV---QRLQSMT 114
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579
+ SQ +++V+ G P P + + ++GAEI S +I + + ++ I D+ TY
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Query: 580 TVTATNAAGSTSLDLSLQV 598
+V ATN+ G + L V
Sbjct: 175 SVNATNSVGRATSTAELLV 193
Score = 83.6 bits (207), Expect = 1e-18
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 728
QAP F + + V E T A + P P + WFR+ + + +S P + F
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
L + ++ ++G Y + ATN G AT A + V + P+
Sbjct: 64 KLTIPAV-TKANSGRYSLKATNGSGQATSTAELLV-KAETAPPNF 106
Score = 60.9 bits (148), Expect = 1e-10
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 48/188 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH--IITSRGTQRKL 363
F L SV ++ ATF+ +S P +V W + G+ I S I+ + KL
Sbjct: 7 TFTQPLQSVVVLEG-STATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 364 VIKRVTQDDETDIGVLA------------LNVKS-------VSKLKWLDFGSGG------ 398
I VT+ + + A L VK+ V +L+ + G
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 399 -----------WWFESKYKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATN 444
+ Y+D + I+ I+ E ++ + G Y+ ATN
Sbjct: 126 RVTGIPTPVVKF-----YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 445 EAGTAETR 452
G A +
Sbjct: 181 SVGRATST 188
Score = 38.2 bits (89), Expect = 0.005
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP 47
+ A LTI + G Y++ +N GQA++T ++ + + P
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
Score = 33.2 bits (76), Expect = 0.20
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
E D +L I + +D G Y+++ +N++G+A++T ++
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 109 bits (274), Expect = 1e-28
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 138 APVD-AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYE 193
P AP I ++ + V PT ++KWY + ++ + + T
Sbjct: 1 GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ V +++C G Y TN G A TL V G +
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 91.6 bits (228), Expect = 2e-22
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
+ AP R V R + V++ P + W+ N L S K
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
+ LE+ + ++ D+G Y+ V TN G A+ A + V
Sbjct: 64 LTLEILDCHTD-DSGTYRAVCTNYKGEASDYATLDVT 99
Score = 73.5 bits (181), Expect = 4e-16
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 497 LQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR 556
+ P+ + ++S R+ + + P E+ W NG E+ +S
Sbjct: 3 FTLDHAPR------ITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIH 56
Query: 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601
T+ I D+ TY TN G S +L V G
Sbjct: 57 YTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 53.5 bits (129), Expect = 5e-09
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ S + + F + + P +VKW G E++ES++ T+ L I
Sbjct: 10 RITLRMRSHRVPCG-QNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEI 68
Query: 366 KRVTQDDE 373
DD
Sbjct: 69 LDCHTDDS 76
Score = 48.4 bits (116), Expect = 3e-07
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
Y + ++ + + T + V +++C G Y TN G A
Sbjct: 43 YHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDY 93
Score = 35.0 bits (81), Expect = 0.016
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
TL I+ D G Y +N G+AS +
Sbjct: 60 TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 109 bits (274), Expect = 2e-28
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-GRNI 190
R + V V AP I L++ S+ + C SG P P I W+KD+ + I
Sbjct: 1 RQLTVLERV---APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 57
Query: 191 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
++ T+ + EG YTC+A + G A+ +++G + K +
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
Score = 82.0 bits (203), Expect = 6e-19
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP E +T +I + +P P I+WF++N+ L+ + N L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
++ E D G Y A + LG A A ++
Sbjct: 68 IRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 65.1 bits (159), Expect = 4e-13
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 493 RTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS 552
R + + P + NL++Q S+ +V G P P+I W K+ + +
Sbjct: 1 RQLTVLERVAPT------ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED 54
Query: 553 KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
I + + + I V + D YT A + G ++ + G
Sbjct: 55 S--GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 49.6 bits (119), Expect = 1e-07
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 405 YKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+KD+ + I ++ T+ + EG YTC+A + G A+
Sbjct: 45 FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV 92
Score = 36.2 bits (84), Expect = 0.007
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD 48
+++ + LTI + +D G YT + LG A + A +
Sbjct: 59 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 109 bits (273), Expect = 2e-28
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + A TL P P+ P I R+ +S+TL W+ P D S + +VLE +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNG 62
Query: 90 VW-NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
+ + +++TKL+ FR++A N GT S Y
Sbjct: 63 EFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113
Score = 48.5 bits (116), Expect = 3e-07
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ ++++ E S Q+ + L F++ A N G
Sbjct: 48 IQNFVLEWDEGKG-NGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 108 bits (272), Expect = 3e-28
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTY 101
P P + + +VTL W P+ G +T Y++E ++ N +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 102 EVTKLTTKHEYMFRVAAVNAIGT-GPASHNTRYVVVKAPVDA 142
V+ LT Y FRV A NA G P S + + + V+A
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 56.2 bits (136), Expect = 7e-10
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG--PEATT 655
+ YI+++++ + ++ K + ++TV L + + Y F+V A+N+ G P +
Sbjct: 42 ITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPS 101
Query: 656 ELV 658
+ +
Sbjct: 102 DAI 104
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 107 bits (269), Expect = 5e-28
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYENNVAR 198
EAP I E ++ G S V G P P+ +WYK+ I+ E+NV
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + + KA N AG + LLVQ K
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 93.5 bits (233), Expect = 4e-23
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 729
+AP ER + +TV + +V P P W++N + S + + +N+
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L +++ E D+ V A N G + A + V
Sbjct: 64 LVIRDVTGE-DSASIMVKAINIAGETSSHAFLLV 96
Score = 67.7 bits (166), Expect = 4e-14
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVR 573
++SQ + S V+ G P PE W KNG +I S + E+ + I V
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQV 598
D+++ V A N AG TS L V
Sbjct: 72 EDSASIMVKAINIAGETSSHAFLLV 96
Score = 48.8 bits (117), Expect = 2e-07
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 304 PAVE---FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRG 358
P++E ++ S T V DA F+V + PD + +W K G +I+ S R
Sbjct: 1 PSMEAPKIFERIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED 59
Query: 359 TQRKLVIKRVTQDDE 373
+LVI+ VT +D
Sbjct: 60 NVCELVIRDVTGEDS 74
Score = 47.3 bits (113), Expect = 6e-07
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
YK+ I+ E+NV + + + KA N AG +
Sbjct: 40 YKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 93
Score = 34.2 bits (79), Expect = 0.023
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
E++ L I +D + N G+ S+ +
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 113 bits (285), Expect = 7e-28
Identities = 54/308 (17%), Positives = 96/308 (31%), Gaps = 66/308 (21%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI-F 558
+ PP+ K Q + G P+P ++W K G ++ + I F
Sbjct: 4 EEPPR------FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEF 57
Query: 559 IDEETSTIAIYSV-VRADTSTYTVTATNAAGSTSLDLSLQVLG---------YIIQQQE- 607
+ + + I + D + Y A N+ G ++ L VL I +
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 608 --------------------------KN------SLKFTKVATLDPSTLQYTVENLRDKS 635
K+ S ++ L LQ D+
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695
+Y + A NS G + + + AP F + G + +
Sbjct: 178 KY--ECVATNSAG-------VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCV 228
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755
SP P + W + + L ++ G N++ E D+ +Y VA + LG
Sbjct: 229 AVGSPMPYVKWMQGAEDLTPE---DDMPVGRNVL----ELTDVKDSANYTCVAMSSLGVI 281
Query: 756 THGARVTV 763
A++TV
Sbjct: 282 EAVAQITV 289
Score = 102 bits (256), Expect = 5e-24
Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 47/257 (18%)
Query: 2 EEDSATLTIVK-FEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDT-PEIVGRSDSS 59
E A L I +D Y N++G+ + K+T+L P P I
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNID------ 112
Query: 60 VTLHWRPPQD----DGHS-----PVTGY------------VLESHDKDEFMVWNKIETTS 98
PQ + +G ++ + + + S
Sbjct: 113 -----MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRI----KQLRS 163
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
++ + + A N+ G +S YV V+ AP
Sbjct: 164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN----VAPRFSILPMSHEIMP 219
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+V + CV G P P +KW + + ++ NV + YTC A
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNV----LELTDVKDSANYTCVAM 275
Query: 218 NEAGTAETSCTLLVQGK 234
+ G E + V+
Sbjct: 276 SSLGVIEAVAQITVKSL 292
Score = 89.5 bits (222), Expect = 1e-19
Identities = 42/286 (14%), Positives = 74/286 (25%), Gaps = 78/286 (27%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVARF 199
E P + KD + + C +G P P + W K + + I ++ +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 200 TVVN--CSESSEGRYTCKATNEAGTAETSCTLLVQ------------------------- 232
+ + E Y C A N G L V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 233 ---------------------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV--- 268
+ SA + + L I+ + D+ G
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQ---GKYEC 181
Query: 269 LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQV 328
+A N V R++S P F S ++P G+
Sbjct: 182 VATNSAGV-------RYSSPANLYVR----VQNVAP--RFSILPMSHEIMPG-GNVNITC 227
Query: 329 ELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
SP VKW++ +++ + V++ D
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPVGR------NVLELTDVKDS 267
Score = 84.9 bits (210), Expect = 4e-18
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENII 729
+ P FI+ +++ G + + P P + W + K + S + F + +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLAQS 789
L ++ + D Y+ VA N +G T A++TV E +ID+ Q
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP-------QL 117
Query: 790 TEVDVTST 797
V+ T T
Sbjct: 118 KVVERTRT 125
Score = 77.2 bits (190), Expect = 2e-15
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 628 VENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
+ RD++ Y + A+NSVG E T L P P + K V+
Sbjct: 70 LRTPRDENVY--ECVAQNSVG---EITVH-AKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747
T ++ +P P I WF++ P+ S I + L+++ + ETD G Y+ V
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS-EETDQGKYECV 182
Query: 748 ATNELGSA-THGARVTVDVEKVGRPSI 773
ATN G + A + V V+ V P
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNV-APRF 208
Score = 72.9 bits (179), Expect = 5e-14
Identities = 52/345 (15%), Positives = 91/345 (26%), Gaps = 98/345 (28%)
Query: 308 FLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGTQRK-LVI 365
F+ + V G A+F + P +V W KKGK++ I + L I
Sbjct: 9 FIKEPKDQIGVSG-GVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 366 KRV-TQDDE-----------------TDIGVLALNVKSVSKLKWL--------DFGS--- 396
+ + T DE + VL + +
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 397 -----GG-------WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444
G W+ + D S GR + + + E+ +G+Y C ATN
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--LQIESSEETDQGKYECVATN 185
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
AG + L + V + P + P
Sbjct: 186 SAGVRYSSP----ANLYVRV-------QNVAP---------------------RFSILPM 213
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
S + + G P P + WM+ ++T +
Sbjct: 214 ------------SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------G 255
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQE 607
+ D++ YT A ++ G + V +
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHH 300
Score = 36.7 bits (85), Expect = 0.020
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE 51
L + +D +YT ++LG A ++T+ S P A
Sbjct: 258 VLELTDVKDS--ANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHH 300
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 105 bits (265), Expect = 2e-27
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYEN 194
P+ + PVI L+D+ S +G P P W KD I ++ +
Sbjct: 1 GPI-SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ S G YTC N AG+ +SC L ++
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 87.7 bits (218), Expect = 5e-21
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
P+ + ++ TV + K P P+ +W ++ K + K + D L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
E+ + D+ D+G Y N GS + ++T+
Sbjct: 65 EIHKTDTS-DSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 69.2 bits (170), Expect = 1e-14
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L+ +S S K VK G PRP W K+G IT ++ D+ + I+ +
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLG 600
D+ YT T N+AGS S L +
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 51.9 bits (125), Expect = 2e-08
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ L T+ A F V+ + P W K GK I + ++ ++ L I
Sbjct: 8 VIVTGLQDTTVSSD-SVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 366 KRVTQDDE 373
+ D
Sbjct: 67 HKTDTSDS 74
Score = 46.5 bits (111), Expect = 1e-06
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
KD I ++ + + S G YTC N AG+ +
Sbjct: 41 TKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
Score = 33.4 bits (77), Expect = 0.046
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
++ L I K + D G YT ++ N+ G S++ K+T
Sbjct: 58 DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 109 bits (274), Expect = 2e-27
Identities = 43/176 (24%), Positives = 62/176 (35%), Gaps = 47/176 (26%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYEN 194
+ EAP I++ +KD + L C + G P PDIKWY+ + ++ +
Sbjct: 1 GAMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ---------------------- 232
TV+ + EG YTC ATNE G ETS LL+Q
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGST 120
Query: 233 --------------------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV 268
K ++ S I LV+K V + +T G
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQR--KTHAGK 174
Score = 108 bits (271), Expect = 4e-27
Identities = 45/245 (18%), Positives = 68/245 (27%), Gaps = 75/245 (30%)
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
Q ++ G P P+I W + G E+ S+ ++ D T
Sbjct: 26 QLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRTH-------------------- 63
Query: 585 NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644
+L D+ Y A
Sbjct: 64 -------------------------TLTVMTE-------------EQEDEGVY--TCIAT 83
Query: 645 NSVGLGPEATTELVALATHATLG--SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
N VG E T + L + Q E+ T+RL P P
Sbjct: 84 NEVG---EVET-------SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP 133
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
++ WF K L +S L +K +T AG YKV +N G+ V
Sbjct: 134 AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Query: 763 VDVEK 767
+ +K
Sbjct: 194 I-QDK 197
Score = 96.3 bits (240), Expect = 7e-23
Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 49/198 (24%)
Query: 405 YKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461
Y+ + ++ + TV+ + EG YTC ATNE G ET
Sbjct: 42 YRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET---------- 91
Query: 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521
++ L +Q+ PQ + +
Sbjct: 92 --------------------------------SSKLLLQATPQ---FHPGYPLKEKYYGA 116
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR-ADTSTYT 580
V S ++ V Y G P P ++W + +S+ I E + + + +V R Y
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 581 VTATNAAGSTSLDLSLQV 598
V +N G+ L +++
Sbjct: 177 VQLSNVFGTVDAILDVEI 194
Score = 94.4 bits (235), Expect = 3e-22
Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
Y A N +G +++ ++++A + G S++ L + G
Sbjct: 77 VYTCI--ATNEVGE--VETSSK-LLLQATPQFHPGYPLKEKYYGAVG--STLRLHVMYIG 129
Query: 171 VPTPDIKWYKDDSLIK--GR-NITYENNVARFTVVNC-SESSEGRYTCKATNEAGTAETS 226
P P + W+ L++ I + + N ++ G+Y + +N GT +
Sbjct: 130 RPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI 189
Query: 227 CTLLVQGK 234
+ +Q K
Sbjct: 190 LDVEIQDK 197
Score = 90.5 bits (225), Expect = 7e-21
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G+AP + ++ T K +L ++ P P I W+R K L+ S K + DG
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
L + + E D G Y +ATNE+G +++ +
Sbjct: 65 LTVMTEEQE-DEGVYTCIATNEVGEVETSSKLLLQAT 100
Score = 68.2 bits (167), Expect = 3e-13
Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 47/186 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ VT A ++ P +KW + GKE+ +S ++ ++S G L +
Sbjct: 9 GIRKEMKDVTTKLG-EAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 366 KRVTQDDETDIGVLA------------LNVKSVSKLKW-------LDFGSGG-------- 398
Q+DE +A L +++ + G
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY 127
Query: 399 ---------WWFESKYKDDSLIK--GR-NITYENNVARFTVVNC-SESSEGRYTCKATNE 445
W + L++ I + + N ++ G+Y + +N
Sbjct: 128 IGRPVPAMTW-----FHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 446 AGTAET 451
GT +
Sbjct: 183 FGTVDA 188
Score = 37.7 bits (88), Expect = 0.007
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP----GAPDTPEIVGRSD 57
+ + TLT++ E +D G YT +N +G+ ++K+ L + P G P + G
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVG 118
Query: 58 SSVTLH 63
S++ LH
Sbjct: 119 STLRLH 124
Score = 34.7 bits (80), Expect = 0.069
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 2 EEDSATLTIVKFEDK-DLGDYTISLSNALGQASATTKVT 39
E L + + K G Y + LSN G A V
Sbjct: 155 TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 105 bits (265), Expect = 3e-27
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW-NKIETT 97
+ S P P +P + + ++L W P Y+LE ++ + K +
Sbjct: 3 SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGE 62
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
Y V L +Y F+V A N+ G S +
Sbjct: 63 DLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS 104
Score = 57.4 bits (139), Expect = 3e-10
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 587 AGSTSLDLS---------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
AG T L L + + YI++ +E+ S K D L YTV+NLR ++Y
Sbjct: 19 AGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKY-DGEDLAYTVKNLRRSTKY 77
Query: 638 YFQVFAENSVGLGP 651
F+V A NS G
Sbjct: 78 KFKVIAYNSEGKSN 91
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 111 bits (278), Expect = 5e-27
Identities = 57/378 (15%), Positives = 96/378 (25%), Gaps = 129/378 (34%)
Query: 399 WWFESKYKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
W+ I + E +R T+ N + G Y C+AT+ G
Sbjct: 37 WYN----PQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT------ 86
Query: 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNL 515
+ T L+I +
Sbjct: 87 -----------------------------------QEATVVLEIYQKLT------FREVV 105
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
Q +V + P P +SW+ + E+T R +
Sbjct: 106 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN------------- 152
Query: 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
N+L+ + N D+
Sbjct: 153 ---------------------------------NNLQILNI-------------NKSDEG 166
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695
Y + EA E+ + P A ++ T + + +
Sbjct: 167 IY--RCEGRV------EARGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCR 217
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755
SP P+I WFRN K + + + I G N L ++ + D G Y ATN+ G
Sbjct: 218 ASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINS-DGGPYVCRATNKAGED 274
Query: 756 THGARVTVDVEKVGRPSI 773
A + V +
Sbjct: 275 EKQAFLQV----FVQHHH 288
Score = 108 bits (271), Expect = 4e-26
Identities = 49/246 (19%), Positives = 84/246 (34%), Gaps = 27/246 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDSS 59
E + LTI +D G Y ++A GQ AT + + + +
Sbjct: 56 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED 115
Query: 60 VTLHWR-----PPQDDGHSPVT----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
+ R P V+ + + + F + + ++ +
Sbjct: 116 AEVVCRVSSSPAPA------VSWLYHNEEVTTISDNRFAM-----LANNNLQILNINKSD 164
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
E ++R G V+V P A + + ++ A +T C SG
Sbjct: 165 EGIYRCEGRV-EARGEIDFRDIIVIVNVP---PAISMPQKSFNATAERGEEMTFSCRASG 220
Query: 171 VPTPDIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
P P I W+++ LI+ + + TV N S G Y C+ATN+AG E L
Sbjct: 221 SPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Query: 230 LVQGKE 235
V +
Sbjct: 281 QVFVQH 286
Score = 91.8 bits (228), Expect = 2e-20
Identities = 52/345 (15%), Positives = 94/345 (27%), Gaps = 95/345 (27%)
Query: 302 STPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK-GKEIKESARHIITSRGTQ 360
S ++ L V L F + W G++I + R ++ G +
Sbjct: 1 SMALLQVTISLSKVELSVG-ESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVR 59
Query: 361 RKLVIKRVTQDD-------------ETDIGVLALNVKS----VSKLKWLDFGSGG----- 398
+L I +D +T + L + + +F G
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 119
Query: 399 ------------WWFESKYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKA 442
W + + R NN + N ++S EG Y C+
Sbjct: 120 CRVSSSPAPAVSW-----LYHNEEVTTISDNRFAMLANNNLQIL--NINKSDEGIYRCEG 172
Query: 443 TNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502
EA R + + P
Sbjct: 173 RVEARG----------------------------------------EIDFRDIIVIVNVP 192
Query: 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE 562
P I + + + + G P P ISW +NG I +++ + +
Sbjct: 193 PA---ISMPQ-KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGS 246
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQ 605
+ + + +++ +D Y ATN AG LQV +
Sbjct: 247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHHH 291
Score = 89.9 bits (223), Expect = 8e-20
Identities = 43/281 (15%), Positives = 79/281 (28%), Gaps = 71/281 (25%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVAR 198
+ L S C G P + I + E +R
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ------------------------- 232
T+ N + G Y C+AT+ G + + L +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 233 --------------GKEIKESA--RHIITARGTQRKLVIKRVTQDDETDIGV---LALNV 273
+E+ + R + A L I + + DE G+
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQILNINKSDE---GIYRCEGRVE 175
Query: 274 KSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-S 332
+++ PA+ K + T + TF S S
Sbjct: 176 A-----------RGEIDFRDII--VIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGS 221
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
P+ + W + GK I+E+ ++I+ T+ L ++ + D
Sbjct: 222 PEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDG 260
Score = 80.2 bits (198), Expect = 1e-16
Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 58/193 (30%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
A +A G T + + +E + + C VS P P +
Sbjct: 79 ATDAKGQ--TQEATVVLEIYQK-----LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131
Query: 178 WYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNEA-GTAETSCTLLVQ 232
W + + R NN + N ++S EG Y C+ EA G + +++
Sbjct: 132 WLYHNEEVTTISDNRFAMLANNNLQIL--NINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
Query: 233 ------------------------------------------GKEIKESARHIITARGTQ 250
GK I+E+ ++I+ T+
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 249
Query: 251 RKLVIKRVTQDDE 263
L ++ + D
Sbjct: 250 --LTVRNIINSDG 260
Score = 65.2 bits (159), Expect = 1e-11
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
+ + + P + + ++S+ + +G L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 732 LKEADSETDAGDYKVVATNELGSATHG-ARVTV 763
+ A+ E DAG Y+ AT+ G + +
Sbjct: 64 IYNANIE-DAGIYRCQATDAKGQTQEATVVLEI 95
Score = 32.1 bits (73), Expect = 0.65
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
++ + LT+ + D G Y +N G+ + +
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 104 bits (261), Expect = 5e-27
Identities = 27/90 (30%), Positives = 33/90 (36%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
AP LKD L+C V G P P I W + I+ T E VA +
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQ 69
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ G YTC A N G S + V
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 83.9 bits (208), Expect = 8e-20
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR 720
+ + G AP F ++ V E L V+ +P P I W N +P+ + R
Sbjct: 1 GSSGSSGME-VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---R 56
Query: 721 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ L +++A E D G Y +A N LG + A VTV
Sbjct: 57 STCEAGVAELHIQDALPE-DHGTYTCLAENALGQVSCSAWVTV 98
Score = 63.1 bits (154), Expect = 2e-12
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553
+ + ++ P S LK + + ++ G P P I+W+ NG I +
Sbjct: 3 SGSSGMEVAPS------FSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA- 55
Query: 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
R + + + I + D TYT A NA G S + V
Sbjct: 56 --RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 49.2 bits (118), Expect = 1e-07
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+ I+ T E VA + + G YTC A N G
Sbjct: 46 LLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92
Score = 41.2 bits (97), Expect = 8e-05
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
F S L ++ D Q + +P ++ WL G+ I+ + L I
Sbjct: 13 SFSSVLKDCAVIEG-QDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE---LHI 68
Query: 366 KRVTQDDE 373
+ +D
Sbjct: 69 QDALPEDH 76
Score = 35.0 bits (81), Expect = 0.014
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
E A L I +D G YT NALGQ S + VT
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 104 bits (261), Expect = 1e-26
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-----SH 83
+S T PG P I SVTL +RP DG + ++ +++E
Sbjct: 3 SGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVG 61
Query: 84 DKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+ +E+++ +++ + + EV L Y FR+ VN +GT P S +R +
Sbjct: 62 EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
Score = 52.0 bits (125), Expect = 3e-08
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 598 VLGYIIQQQEKNSLKFTKVATL-----DPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ ++++ Q + + + +P V +L + Y F++ N VG P
Sbjct: 48 ISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSP 106
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 106 bits (267), Expect = 2e-26
Identities = 38/249 (15%), Positives = 60/249 (24%), Gaps = 64/249 (25%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L++ + +S + K G P+P + W + G EI + +
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY--------- 61
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ L V D
Sbjct: 62 ----------------------------------HQLIIASV-------------TDDDA 74
Query: 635 SEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMA 694
+ Y QV A N G T L + P +E + +
Sbjct: 75 TVY--QVRATNQGGSV-SGTASLEVEVP-----AKIHLPKTLEGMGAVHALRGEVVSIKI 126
Query: 695 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
P P I W + + ++ + I L DAG Y V A N G
Sbjct: 127 PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186
Query: 755 ATHGARVTV 763
+ V
Sbjct: 187 DQKTVELDV 195
Score = 101 bits (253), Expect = 1e-24
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 50/172 (29%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
A AP +E L++ +QS+ TL C V+G P P +KWY+ I + Y +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ------------------------ 232
+ + + ++ Y +ATN+ G+ + +L V+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 233 --------------------GKEIKESARHIITARGTQRK-LVIKRVTQDDE 263
I + + + + + V + D
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
Score = 100 bits (250), Expect = 3e-24
Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
+++V A N G+ S + V+ P P E + A V+++ SG P
Sbjct: 76 VYQVRATNQGGS--VSGTAS-LEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132
Query: 173 TPDIKWYKDDSLIK--GR-NITYENNVARFTVV-NCSESSEGRYTCKATNEAGTAETSCT 228
P I W K LI G + + G Y A N G + +
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192
Query: 229 LLVQ 232
L V
Sbjct: 193 LDVA 196
Score = 90.2 bits (224), Expect = 8e-21
Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 49/200 (24%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
Y+ I + Y + + + + ++ Y +ATN+ G+
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG-------- 90
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T +L+++ P + K + + +
Sbjct: 91 ----------------------------------TASLEVEVPAKIHLPKTL-EGMGAVH 115
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTST 578
+++ + G P P I+W K I ++ ++ + TS + V R D
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 579 YTVTATNAAGSTSLDLSLQV 598
Y V A N G + L V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
Score = 85.2 bits (211), Expect = 4e-19
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 727
AP F E V+ + L+ KV P P + W+R K +++ K I F G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV-EKVGRPSI 773
L + + DA Y+V ATN+ GS + A + V+V K+ P
Sbjct: 62 HQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107
Score = 61.7 bits (150), Expect = 5e-11
Identities = 36/191 (18%), Positives = 56/191 (29%), Gaps = 51/191 (26%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH--IITSRGTQRKL 363
F +L ++ + +AT +++ P VKW ++GKEI I +G +L
Sbjct: 6 HFKEELRNLNVRYQ-SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 364 VIKRVTQDDETDIGVLA------------LNVKS---------VSKLKWLDFGSGG---- 398
+I VT DD T V A L V+ + + + G
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 399 -------------WWFESKYKDDSLIK--GR-NITYENNVARFTVV-NCSESSEGRYTCK 441
W K LI G + + G Y
Sbjct: 125 KIPFSGKPDPVITW-----QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 442 ATNEAGTAETR 452
A N G +
Sbjct: 180 AKNRFGIDQKT 190
Score = 34.7 bits (80), Expect = 0.069
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIV 53
+ L I D D Y + +N G S T + + P P+ +
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-VPAKIHLPKTL 108
Score = 31.2 bits (71), Expect = 0.83
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
++ + E KD G Y + N G T ++
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 101 bits (255), Expect = 4e-26
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNV 196
P + L D V + V G P P + W ++ ++ E +
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
R ++ G YTCKA NE G + L V+G+
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 89.6 bits (223), Expect = 1e-21
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 730
P F +++V+E + + +V+ P P + W RN +P+ ++ +G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ A+ DAG Y A NE G+ AR+ V
Sbjct: 65 RILAAERG-DAGFYTCKAVNEYGARQCEARLEV 96
Score = 63.8 bits (156), Expect = 1e-12
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 500 QSPPQ--QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI 557
++PP L Q + + ++ G P+P +SW++N + +
Sbjct: 3 KAPPTFKVS--------LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA 54
Query: 558 FIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
E + I + R D YT A N G+ + L+V G
Sbjct: 55 EEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 46.9 bits (112), Expect = 8e-07
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSR 357
SK+ P F L ++ D + + P V WL+ + ++ R +
Sbjct: 2 SKAPP--TFKVSLMDQSVREG-QDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 358 GTQRKLVIKRVTQDDE 373
G +L I + D
Sbjct: 59 GGLCRLRILAAERGDA 74
Score = 43.8 bits (104), Expect = 1e-05
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
++ ++ E + R ++ G YTCKA NE G +
Sbjct: 40 LRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
Score = 32.6 bits (75), Expect = 0.087
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
E L I+ E D G YT N G ++
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 102 bits (256), Expect = 6e-26
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 28 ALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK-D 86
+S T + P P E+ + D SV L W P DD +SP+T +++E D
Sbjct: 1 GSSGSSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMH 59
Query: 87 EFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
+ +W+ + T L+ Y FRV AVN+IG S + + KA +
Sbjct: 60 KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119
Query: 145 P 145
P
Sbjct: 120 P 120
Score = 50.1 bits (120), Expect = 2e-07
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLD-PSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ +II+ ++ + T NL Y F+V A NS+G
Sbjct: 47 ITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSL 101
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 102 bits (255), Expect = 7e-26
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 28 ALGQASATTKVTLLSAPGAPDTP--EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK 85
+ G + + + + P AP+ P + ++ L W P DG+SP+ Y+LE +
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSEN 60
Query: 86 DE--FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+ ++ ++ +T+ V L Y FR+ AVN +G G S +T V +
Sbjct: 61 NAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESG 117
Score = 59.7 bits (145), Expect = 5e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ YI++ E N+ +A++DP TV+ L Y F++ A N VG G
Sbjct: 50 LIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQ 103
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 104 bits (261), Expect = 1e-25
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
G + T + P P ++ + +SV+L W P+ DG S + GY++E K
Sbjct: 88 GLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSD 147
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
T +T L EY FRV+A N G + V+ K
Sbjct: 148 KWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 100 bits (250), Expect = 3e-24
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTY 101
PG P ++ + +SVTL W PP DG S + Y++E + ++ + T T++
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTR-KAYSTVATNCHKTSW 64
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA-EAPVIQEPLKDSV 155
+V +L Y FRV A N G G + V + + ++SV
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSV 119
Score = 58.5 bits (142), Expect = 6e-10
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+ YI++++E ++ VAT + + V+ L++ YYF+V AEN G+G A T
Sbjct: 37 IKNYIVEKRESTRKAYSTVAT-NCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAET 93
Score = 53.5 bits (129), Expect = 4e-08
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 581 VTATNAAGSTSLDLS---------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENL 631
+T S+ LS ++LGYI++ Q K S K+ AT + T+ L
Sbjct: 109 ITLM-DVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VKVTEATITGL 165
Query: 632 RDKSEYYFQVFAENSVGLGPEATT 655
EY F+V A+N G+
Sbjct: 166 IQGEEYSFRVSAQNEKGISDPRQL 189
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 99.8 bits (249), Expect = 3e-25
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 136 VKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITY 192
+ P + + L+CVV G P P + W K + +
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + + G Y C+A N AG A + + V
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 91.3 bits (227), Expect = 3e-22
Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
A+ G G P F+ V L V P P +VW + + L +S +
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
DG L L A DAG Y A N G A A VTV
Sbjct: 65 DGAEHGLLLTAALPT-DAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 69.0 bits (169), Expect = 2e-14
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P + W K G ++ S+ D + + + + D Y A NAAG
Sbjct: 39 GEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA 98
Query: 594 LSLQVL 599
++ VL
Sbjct: 99 AAVTVL 104
Score = 52.8 bits (127), Expect = 9e-09
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
FL V +V +A + + P V W K G+++ S R + G + L++
Sbjct: 15 CFLRFPRPVRVVSG-AEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 366 KRVTQDDE 373
D
Sbjct: 74 TAALPTDA 81
Score = 47.0 bits (112), Expect = 1e-06
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
K + + + + + G Y C+A N AG A
Sbjct: 48 EKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA 98
Score = 35.1 bits (81), Expect = 0.016
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
+ L + D G Y NA G+A A VT+L P
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 103 bits (257), Expect = 3e-25
Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 59/235 (25%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETS--TIAIYSVVRADTSTYTVTATNAAGST 590
+++++ N EI + ++ ID T + + + D TYT + +
Sbjct: 28 KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 87
Query: 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
ST+ + + + E
Sbjct: 88 H------------------------------STVVLVGDVFKKLQKEAEFQRQEWIRK-- 115
Query: 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRN 709
Q P F+E V + + L KV + IVW+++
Sbjct: 116 --------------------QGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKD 154
Query: 710 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
+ + K F L + E + DAG Y+V+ ++ G ++ +
Sbjct: 155 EREISVDEKHD--FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 91.5 bits (227), Expect = 3e-21
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 14/144 (9%)
Query: 103 VTKLTTKHEYMFRVAAVNAIGTG-----------PASHNTRYVVVKAPVDAEAPVIQEPL 151
+ KL + E + + T + + + P E L
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 152 KDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSE 209
V + +V L+C V+ + I WYKD+ I +++ + + S+
Sbjct: 125 SWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA 183
Query: 210 GRYTCKATNEAGTAETSCTLLVQG 233
G Y ++ G ++ L+ +
Sbjct: 184 GIYEVILKDDRGKDKSRLKLVDEA 207
Score = 83.8 bits (207), Expect = 1e-18
Identities = 28/237 (11%), Positives = 56/237 (23%), Gaps = 63/237 (26%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-----RNITYENNVAR 198
P + L + + + ++ I +I +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRV 258
+ + EG YT + + T ++ L+ +KL +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD----------------VFKKLQKEAE 106
Query: 259 TQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLV 318
Q E + K P F+ L V
Sbjct: 107 FQRQE----------------------------------WIRKQGP--HFVEYLSWE--V 128
Query: 319 PHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
+ +V + + W K +EI +H L+I ++ D
Sbjct: 129 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDA 183
Score = 77.7 bits (191), Expect = 2e-16
Identities = 25/200 (12%), Positives = 55/200 (27%), Gaps = 38/200 (19%)
Query: 405 YKDDSLIKG-----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
++ I +I + + + EG YT + + T + +
Sbjct: 38 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL---- 93
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
+ +K + + ++K F S
Sbjct: 94 --VGDVFKKLQKEAEFQRQEWIRKQGPHFVEY------------------------LSWE 127
Query: 520 LSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578
++ + ++ K + I W K+ EI+ + + + T+ I + D
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKDGICTLLITEFSKKDAGI 185
Query: 579 YTVTATNAAGSTSLDLSLQV 598
Y V + G L L
Sbjct: 186 YEVILKDDRGKDKSRLKLVD 205
Score = 76.5 bits (188), Expect = 5e-16
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 675 FIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 733
F + + EKG +R + K S + + N K + PK + D I+E+
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64
Query: 734 EAD-SETDAGDYKVVATNELGSATHGARVTVDVEK 767
+ D G Y + + + DV K
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK 99
Score = 59.6 bits (144), Expect = 4e-10
Identities = 23/197 (11%), Positives = 57/197 (28%), Gaps = 53/197 (26%)
Query: 308 FLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIIT--SRGTQRKL 363
F +V ++ G F Q E S + +V ++ KEI E ++ + ++
Sbjct: 5 FTKSELAVEILEK-GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFE------------------SKY 405
++++ +DE + K+ + + G + +Y
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 123
Query: 406 KDDSLIKGRNITYE------------------------------NNVARFTVVNCSESSE 435
+ N+ + + + + S+
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA 183
Query: 436 GRYTCKATNEAGTAETR 452
G Y ++ G ++R
Sbjct: 184 GIYEVILKDDRGKDKSR 200
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
++ TL I +F KD G Y + L + G+ + K+
Sbjct: 166 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
Score = 31.4 bits (71), Expect = 0.82
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEI 52
+ + K +D+D G YT L + +T + E
Sbjct: 57 NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEF 107
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 99.7 bits (249), Expect = 4e-25
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
+ S P P++ RS + ++W P +G + VT Y LE + M
Sbjct: 3 SGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVEGSM-QICYCGPG 60
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+YE+ L+ Y RV A++ +G GP S V
Sbjct: 61 LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
Score = 50.8 bits (122), Expect = 4e-08
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 586 AAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
+T ++ + V Y ++ L Y ++ L + Y
Sbjct: 18 CRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEG-SMQICYC--GPGLSYEIKGLSPATTY 74
Query: 638 YFQVFAENSVGLGP 651
Y +V A + VG GP
Sbjct: 75 YCRVQALSVVGAGP 88
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 99.3 bits (248), Expect = 5e-25
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 43 APGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTT 100
PG P + GR + L W PP DG SP++ Y +E ++ ++ + +
Sbjct: 8 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEK-DEPREVYQGSEVE 66
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V+ L Y FR+ A N +G GP S
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFS 94
Score = 54.7 bits (132), Expect = 2e-09
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ Y ++ + +V S ++ TV +L Y F++ A N +G GP
Sbjct: 41 ISCYSVEMSPIEKDEPREVY--QGSEVECTVSSLLPGKTYSFRLRAANKMGFGP 92
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 99.0 bits (247), Expect = 7e-25
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYENNVA 197
P + D ++C VSG+PTPD+ W D ++ + + EN V
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESA 240
+ + G YTC ATN AG S L+V KE S+
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
Score = 87.8 bits (218), Expect = 6e-21
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
GS G P F++ + TV+E R+ KV P P + W + KP+ + +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 727 NII-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
+ L ++ S DAG Y +ATN G + + V K PS
Sbjct: 64 GVHSLIIEPVTSR-DAGIYTCIATNRAGQNSFSLELVVA-AKESGPS 108
Score = 66.6 bits (163), Expect = 1e-13
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P++SW +G + A ++ + E ++ I V D YT ATN AG S
Sbjct: 35 GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94
Query: 593 DLSLQVLG 600
L L V
Sbjct: 95 SLELVVAA 102
Score = 45.1 bits (107), Expect = 5e-06
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLV 364
FL +T+ ++S P + W GK ++ + H ++ L+
Sbjct: 11 HFLQAPGDLTVQEG-KLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 365 IKRVTQDDE 373
I+ VT D
Sbjct: 70 IEPVTSRDA 78
Score = 43.5 bits (103), Expect = 2e-05
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
D ++ + + EN V + + G YTC ATN AG
Sbjct: 44 QLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94
Score = 36.6 bits (85), Expect = 0.004
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDT 49
E +L I +D G YT +N GQ S + ++ + + P +
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 98.2 bits (245), Expect = 1e-24
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 128 SHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK- 186
H+ I + S C G P P + W + ++
Sbjct: 3 HHHHHSSKTTLA-----ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST 57
Query: 187 -GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
R +T + F + + S EG Y+ N G E TL +Q
Sbjct: 58 SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 85.5 bits (212), Expect = 3e-20
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 722
H A + + TV E + R P P++ W R + L +S + +
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT 64
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
E+ + D G+Y VV N G +T+
Sbjct: 65 TTKYKSTFEISSVQAS-DEGNYSVVVENSEGKQEAEFTLTI 104
Score = 68.2 bits (167), Expect = 3e-14
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ++W++ G ++ S ++ + ST I SV +D Y+V N+ G +
Sbjct: 40 GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE 99
Query: 594 LSLQV 598
+L +
Sbjct: 100 FTLTI 104
Score = 52.7 bits (127), Expect = 1e-08
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRG 358
SK+T A L+K S+T V A F + P V WL+KG+ + SARH +T+
Sbjct: 9 SKTTLAARILTKPRSMT-VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Query: 359 TQRKLVIKRVTQDDE 373
+ I V DE
Sbjct: 68 YKSTFEISSVQASDE 82
Score = 45.4 bits (108), Expect = 3e-06
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+ ++ R +T + F + + S EG Y+ N G E
Sbjct: 49 LRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA 98
Score = 33.1 bits (76), Expect = 0.069
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ +T I + D G+Y++ + N+ G+ A +T
Sbjct: 66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 106 bits (265), Expect = 1e-24
Identities = 63/406 (15%), Positives = 112/406 (27%), Gaps = 110/406 (27%)
Query: 405 YKDDSLI---KGRNITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
KD ++ N + + EG Y C+A+ +
Sbjct: 57 KKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS-------- 108
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
++S RT + + P + S +S
Sbjct: 109 -----IIS---------------------------RTAKVMVAGPLR------FLSQTES 130
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+ ++ + G P P I W KN ++ + + + I + D+
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSG 190
Query: 578 TYTVTATNAAGS-TSLDLSLQVLG-------YIIQQQEKN-------SLKFTKVATLDP- 621
Y +A N A + T + +++L Q+ N + P
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 622 ------------------------STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
S L + D Y A+ EL
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTY--TCVVTYKNEN-ISASAEL 307
Query: 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP 717
L P F+ E I V P P++ W +N ++ S
Sbjct: 308 TVLV----------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD 357
Query: 718 KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + IL + ++D G Y+ VA NE G+A A++ V
Sbjct: 358 YFQIVGGSNLRILGV----VKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 103 bits (258), Expect = 1e-23
Identities = 53/308 (17%), Positives = 84/308 (27%), Gaps = 64/308 (20%)
Query: 7 TLTIVKFEDKDLGDYT--ISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLH 63
+ + D G Y SL ++ S T KV + E I +V L
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 64 WRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVA 117
G T L D +V S ++++L ++R +
Sbjct: 143 CEVI---GDPMPTIHWQKNQQDLNPIPGDSRVVV----LPSGALQISRLQPGDSGVYRCS 195
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
A N T + ++ P + + +A LEC VSG P P
Sbjct: 196 ARNPAST-RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254
Query: 178 WYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ-- 232
W + + +I + + + N ++ G YTC T + S L V
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSNLLIS--NVTDDDSGTYTCVVTYKNENISASAELTVLVP 312
Query: 233 -------------------------------------GKEIKESARHIITARGTQRKLVI 255
G + S I L I
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LRI 369
Query: 256 KRVTQDDE 263
V + DE
Sbjct: 370 LGVVKSDE 377
Score = 100 bits (251), Expect = 7e-23
Identities = 44/251 (17%), Positives = 72/251 (28%), Gaps = 47/251 (18%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQ-ASATTKVTLLSAPGAPDTPEIV-------GR 55
S L I + + D G Y S N +V +LS PG +
Sbjct: 175 PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Query: 56 SDSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
L W + + + + +
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWL--RGEEVIQLRSKKYSLLG-------------GSNLLI 279
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT 163
+ +T + S + + V P P + A +
Sbjct: 280 SNVTDDDSGTYTCVVTYKNEN--ISASAE-LTVLVP-----PWFLNHPSNLYAYESMDIE 331
Query: 164 LECVVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221
EC VSG P P + W K+ ++ + ++ +S EG Y C A NEAG
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS--NLRILGVVKSDEGFYQCVAENEAG 389
Query: 222 TAETSCTLLVQ 232
A++S L+V
Sbjct: 390 NAQSSAQLIVP 400
Score = 98.0 bits (244), Expect = 7e-22
Identities = 49/281 (17%), Positives = 77/281 (27%), Gaps = 54/281 (19%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETS----TIAIYSVVRADTSTYTVTATNAAG- 588
P I W K+G + R S I + D Y A+
Sbjct: 48 DRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSG 107
Query: 589 ---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLD-----------------------PS 622
S + + + + Q E + L P
Sbjct: 108 SIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPG 167
Query: 623 TLQYTVE---NLR-------DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQA 672
+ V L+ D Y + A N E+ L+ +
Sbjct: 168 DSRVVVLPSGALQISRLQPGDSGVY--RCSARNPASTRTGNEAEVRILS----DPGLHRQ 221
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
F++R E L V P PS W R + + KK + G N L +
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN--LLI 279
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
++ D+G Y V T + + + A +TV V P
Sbjct: 280 SNV-TDDDSGTYTCVVTYKNENISASAELTVLV----PPWF 315
Score = 94.1 bits (234), Expect = 1e-20
Identities = 64/425 (15%), Positives = 114/425 (26%), Gaps = 121/425 (28%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDI 176
+ + + SH+ + + D+V +V L C P I
Sbjct: 3 WGSELES---SHHHHHHGGRRS-----LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVI 54
Query: 177 KWYKDDSLI---KGRNITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
KW KD ++ N + + EG Y C+A+ + S T
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA 114
Query: 230 LVQ-----------------------------------------GKEIKESA---RHIIT 245
V +++ R ++
Sbjct: 115 KVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL 174
Query: 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305
G L I R+ D A N S +++ + +
Sbjct: 175 PSGA---LQISRLQPGDSGVYRCSARNPASTR-----TGNEAEVRILS-----DPGLHRQ 221
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIK-ESARHIITSRGTQRKL 363
+ FL + +V + DA + +S P WL+ + I+ S ++ + L
Sbjct: 222 LYFLQRPSNVIAIEG-KDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN---L 277
Query: 364 VIKRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG--------- 398
+I VT DD L V ++ L
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVS 337
Query: 399 --------WWFESKYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
W K+ ++ + ++ +S EG Y C A NEAG
Sbjct: 338 GKPVPTVNW-----MKNGDVVIPSDYFQIVGGS--NLRILGVVKSDEGFYQCVAENEAGN 390
Query: 449 AETRT 453
A++
Sbjct: 391 AQSSA 395
Score = 62.2 bits (151), Expect = 3e-10
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNK 711
+EL + H G ++ F+ + G + L ++ P I W ++
Sbjct: 3 WGSELESSHHHHHHGGR-RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 712 PLLSSPKKREIF--DGENIILELKEAD-SETDAGDYKVVATNELGSAT--HGARVTV 763
L R+ +G +I + + + D G Y+ A+ + A+V V
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 97.4 bits (243), Expect = 2e-24
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYENNVAR 198
P + ++ ++ VSG+P PD+ WY + ++ + I E +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
S G Y C A N AG A + L V KE
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 85.5 bits (212), Expect = 3e-20
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
P FI+ E ++ E R+ KV PAP + W+ N + + S + I + +
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 729 I-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
L + +DAG Y VA N G AT ++ V ++
Sbjct: 62 HSLIFEVV-RASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 68.9 bits (169), Expect = 2e-14
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVR 573
++ + +++ K G P P++SW NG + ++ + E+ ++ V
Sbjct: 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQVLG 600
+D Y A N AG + + L VL
Sbjct: 72 SDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 45.0 bits (107), Expect = 4e-06
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLV 364
F+ ++++ ++S P V W G+ ++ H +I S L+
Sbjct: 7 RFIQVPENMSIDEG-RFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 365 IKRVTQDDE 373
+ V D
Sbjct: 66 FEVVRASDA 74
Score = 43.1 bits (102), Expect = 2e-05
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
Y + ++ + I E + S G Y C A N AG A
Sbjct: 40 YLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90
Score = 32.3 bits (74), Expect = 0.14
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
E+ +L D G Y N G+A+ T ++
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 104 bits (261), Expect = 3e-24
Identities = 62/370 (16%), Positives = 107/370 (28%), Gaps = 104/370 (28%)
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
G Y C ATN GT +R S+ + + + ++ + V F+
Sbjct: 74 AGSYQCVATNARGTVVSREA------SLRFGFLQEFSAEERDPVKITEGWGVMFTC---- 123
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
SPP +P W+ N
Sbjct: 124 ------SPPP-----------------------------HYPALSYRWLLNEFPNFIPAD 148
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-------------SLDLSLQVLGY 601
R F+ + T + I +D Y+ AT+ + + + Q
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPS 208
Query: 602 IIQQQEKN-------SLKFTKVATLDP---------------------STLQYTVENLRD 633
I + + + A +P L + D
Sbjct: 209 IKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFED 268
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM 693
+ Y + AEN G ++ A P +++ + +R
Sbjct: 269 EGTY--ECEAENIKG-RDTYQGRIIIHA----------QPDWLDVITDTEADIGSDLRWS 315
Query: 694 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753
P P++ W R+ +PL S + E+ GE +L DS G Y+ VA N+ G
Sbjct: 316 CVASGKPRPAVRWLRDGQPLASQN-RIEVSGGELRFSKLVLEDS----GMYQCVAENKHG 370
Query: 754 SATHGARVTV 763
+ A +TV
Sbjct: 371 TVYASAELTV 380
Score = 95.3 bits (237), Expect = 4e-21
Identities = 53/256 (20%), Positives = 88/256 (34%), Gaps = 55/256 (21%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQA-----SATTKVTLLSAPGAPDTPEIVGRS-- 56
+ L I K E DLG+Y+ ++ + S ++++L + P I +
Sbjct: 156 TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPA 215
Query: 57 ------DSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
VTL WR + DG +K ++
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWR--KLDGSQT-----------------SKWLSSE 256
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
+ + + E + A N G ++ R +++ A P + + D+ A
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGR--DTYQGR-IIIHAQ-----PDWLDVITDTEADI 308
Query: 159 QSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
S + CV SG P P ++W +D L I RF+ + G Y C A
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL--VLEDSGMYQCVAE 366
Query: 218 NEAGTAETSCTLLVQG 233
N+ GT S L VQ
Sbjct: 367 NKHGTVYASAELTVQA 382
Score = 95.3 bits (237), Expect = 4e-21
Identities = 45/269 (16%), Positives = 73/269 (27%), Gaps = 49/269 (18%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG---ST 590
P W NG E+ R + I V D +Y ATNA G S
Sbjct: 33 ANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI-SNPVKAKDAGSYQCVATNARGTVVSR 91
Query: 591 SLDLSLQVLGYIIQQ-------QEKNSLKFT----------------------------K 615
L L + E + FT +
Sbjct: 92 EASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR 151
Query: 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675
+ L D Y FA + + ++ + + A + AP
Sbjct: 152 FVSQTTGNLYIAKTEASDLGNY--SCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSI 209
Query: 676 IERF-EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 734
+F + + L +P P I W + + K + +L ++
Sbjct: 210 KAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ---TSKWLSSEP---LLHIQN 263
Query: 735 ADSETDAGDYKVVATNELGSATHGARVTV 763
D G Y+ A N G T+ R+ +
Sbjct: 264 V-DFEDEGTYECEAENIKGRDTYQGRIII 291
Score = 94.5 bits (235), Expect = 7e-21
Identities = 44/239 (18%), Positives = 70/239 (29%), Gaps = 21/239 (8%)
Query: 7 TLTIVK-FEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTP--EIVGRSDSSVTL 62
L I + KD G Y +NA G S + + V
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121
Query: 63 HWRPPQDDGHSPVT-----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVA 117
PP D F+ T+ + K +
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-----QTTGNLYIAKTEASDLGNYSCF 176
Query: 118 AVNAIGTGPASHNTRY----VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
A + I S +++ + + + + D+ A VTLEC G P
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV 236
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
P IKW K D + ++ E + + N EG Y C+A N G +++
Sbjct: 237 PQIKWRKLDGSQTSKWLSSEPLL---HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 84.9 bits (210), Expect = 1e-17
Identities = 60/399 (15%), Positives = 101/399 (25%), Gaps = 111/399 (27%)
Query: 142 AEAPVIQEPLKDSV---AGFQSSVTLECVVSGVPTPDIKWYKDDSLIK----GRNITYEN 194
+ PV +E ++ + VTL C P +W + + +K R
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG--------------------- 233
++ V G Y C ATN GT + L G
Sbjct: 62 DLVISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 234 ------------------------KEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269
+ R + G L I + D +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCF 176
Query: 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE 329
A + ++++ + E A +K P+ T T +
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAA------EDARQYAPSIKAKFPADTYALTGQMVTLECF 230
Query: 330 LS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDI 376
+P Q+KW K ++S L I+ V +DE D
Sbjct: 231 AFGNPVPQIKWRKLDGSQT---SKWLSSEPL---LHIQNVDFEDEGTYECEAENIKGRDT 284
Query: 377 GVLALNVKS----VSKLKWLDFGSGG-----------------WWFESKYKDD-SLIKGR 414
+ + + + + + G W +D L
Sbjct: 285 YQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW-----LRDGQPLASQN 339
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
I RF+ + G Y C A N+ GT
Sbjct: 340 RIEVSGGELRFSKL--VLEDSGMYQCVAENKHGTVYASA 376
Score = 74.9 bits (184), Expect = 2e-14
Identities = 45/336 (13%), Positives = 81/336 (24%), Gaps = 97/336 (28%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEI---KESARHIITSRGTQR 361
EF ++ + F P + +WL + R + + G
Sbjct: 102 EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN-- 159
Query: 362 KLVIKRVTQDDETD--------IGVLALNVKSVSKLKWLDFGSGGWW----FESKYKDDS 409
L I + D + I + +V S L + D
Sbjct: 160 -LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 410 LIKGRNIT-------------------------YENNVARFTVVNCSESSEGRYTCKATN 444
+ G+ +T + ++ + N EG Y C+A N
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
G + I + P
Sbjct: 279 IKGRDTY------------------------------------------QGRIIIHAQPD 296
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
+ + S + G PRP + W+++G + RI +
Sbjct: 297 ------WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN--RIEVSG--G 346
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ +V D+ Y A N G+ L V
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 68.7 bits (168), Expect = 2e-12
Identities = 52/356 (14%), Positives = 82/356 (23%), Gaps = 90/356 (25%)
Query: 308 FLSKLPSVTLVPHLGDATFQVE---LSSPDIQVKWLKKGKEIKESA-RHIITSRGTQRKL 363
F + + + ++P +W G E+K G L
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD---L 63
Query: 364 VIKRVTQDDETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNIT- 417
VI + D G +A N VS+ L FG + + + +G +
Sbjct: 64 VISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121
Query: 418 -----------------------YENNVARFTVV--------NCSESSEGRYTCKATNEA 446
+ RF S G Y+C AT+
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI 181
Query: 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQP 506
LS+ D R P I++
Sbjct: 182 DFITKSVFSKFSQLSLAAE----DARQYAP---------------------SIKAKFPAD 216
Query: 507 AIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTI 566
L + +E FG P P+I W K T +
Sbjct: 217 TYALTGQMVT-----------LECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLL 259
Query: 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLKFTKVATLD 620
I +V D TY A N G + + + +
Sbjct: 260 HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWS 315
Score = 60.6 bits (147), Expect = 8e-10
Identities = 24/148 (16%), Positives = 41/148 (27%), Gaps = 13/148 (8%)
Query: 622 STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE 681
+ +D Y Q A N+ G ++ A+L E +
Sbjct: 62 DLVISNPVKAKDAGSY--QCVATNARG---------TVVSREASLRFGFLQEFSAEERDP 110
Query: 682 KTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETD 740
+ E + PA S W N P R L + + ++ D
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS-D 169
Query: 741 AGDYKVVATNELGSATHGARVTVDVEKV 768
G+Y AT+ + T +
Sbjct: 170 LGNYSCFATSHIDFITKSVFSKFSQLSL 197
Score = 59.5 bits (144), Expect = 2e-09
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 671 QAPLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGE 726
P+F E+ E + + L + +A+P + W N L P R + G+
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+I DAG Y+ VATN G+ + A +
Sbjct: 63 LVIS---NPVKAKDAGSYQCVATNARGTVVSREASLRF 97
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 97.1 bits (242), Expect = 4e-24
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENN--VA 197
AP+ + SV LEC +S +P P + W +++ +++ R Y++N
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ + ++ G YT A NEAG + L V +
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
Score = 85.9 bits (213), Expect = 3e-20
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 726
+AP+FI + + K V E +++L ++ A P P + W RNN+ + + + ++ +
Sbjct: 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ L +K+ + + DAG Y V A NE G T R+ V RP+
Sbjct: 72 RVTLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDVTA----RPNQ 113
Score = 64.0 bits (156), Expect = 2e-12
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGSTS 591
P P++ W +N + + + T T+ I V + D YTV+A N AG T+
Sbjct: 41 AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTT 100
Query: 592 LDLSLQVLG 600
+ L V
Sbjct: 101 CNTRLDVTA 109
Score = 42.0 bits (99), Expect = 8e-05
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 405 YKDDSLIK---GRNITYENN--VARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+++ +++ R Y++N + + ++ G YT A NEAG T
Sbjct: 50 KRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNT 103
Score = 40.1 bits (94), Expect = 3e-04
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH--IIT 355
E K P F+ K S ++ + ++S P ++ W + + ++ + +
Sbjct: 11 EHKRAP--MFIYKPQSKKVLEG-DSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ 67
Query: 356 SRGTQRKLVIKRVTQDDE 373
+ L+IK V + D
Sbjct: 68 DNTGRVTLLIKDVNKKDA 85
Score = 35.1 bits (81), Expect = 0.021
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
TL I KD G YT+S N G + T++ + + P
Sbjct: 69 NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 96.6 bits (241), Expect = 4e-24
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTT 100
S P P + + +SVTL W PVT Y ++ + +++ +T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
Y + L+ EY FRV AVN+IG GP S R +
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG 102
Score = 51.9 bits (125), Expect = 2e-08
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
V Y IQ + + + +T +Y++ L SEY F+V A NS+G GP
Sbjct: 36 VTYYGIQYRAAGT-EGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGP 88
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 104 bits (260), Expect = 5e-24
Identities = 43/254 (16%), Positives = 66/254 (25%), Gaps = 22/254 (8%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDS 58
+ +D +L ++ + D G Y G A S +P
Sbjct: 57 LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116
Query: 59 SVTLHWRPPQDDGHSPVT-------GYVLESHDKDEFMVWNKIETTSTTY--EVTKLTTK 109
L P + + + D +F Y VTK
Sbjct: 117 PFQLDCVLP--NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS 174
Query: 110 HEYMFRVAAVNAIGTGP---ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC 166
Y + A NA + + V PV Q KD +A + C
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYC 234
Query: 167 VVSGVPTPDIKWYKDDSLIKGRNITYENNVARF-----TVVNCSESSEGRYTCKATNEAG 221
+ P ++K+ + G R EG YTC+ N G
Sbjct: 235 MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG 294
Query: 222 TAET-SCTLLVQGK 234
+ S L V
Sbjct: 295 KPQKHSLKLTVVSA 308
Score = 104 bits (260), Expect = 6e-24
Identities = 64/407 (15%), Positives = 104/407 (25%), Gaps = 110/407 (27%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIK--GRNITYENN 195
PVD + PV+++ + + + LEC++ G W KD N +
Sbjct: 2 PVD-KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAET------------------------------ 225
+ S EG Y C A AG A +
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 226 SC------------------TLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIG 267
C R G L VT++D +DI
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGN---LYFTIVTKEDVSDIY 177
Query: 268 V---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDA 324
A N + L + + S +
Sbjct: 178 KYVCTAKNAAV-DEEVVLVEYEIKGVTKD-----NSGYKGEPVPQYVSKDMMAKAG-DVT 230
Query: 325 TFQVELS-SPDIQVKWLKKGKEIKESARHIIT--SRGTQRKLVIKRVTQDD--------E 373
+P + K GK++ + IT +R + ++L+ K +D +
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 374 TDIG-----VLALNVKS----VSKLKWLDFGSGG------------------WWFESKYK 406
+G L L V S K + + G W
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW-----SH 345
Query: 407 DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+ + G T ++ +G Y C+ATNE G T
Sbjct: 346 NAKPLSGGRATVTDSGLVIK--GVKNGDKGYYGCRATNEHGDKYFET 390
Score = 102 bits (256), Expect = 1e-23
Identities = 41/278 (14%), Positives = 72/278 (25%), Gaps = 52/278 (18%)
Query: 534 GFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG---S 589
G + + SW K+G + +E ++ +D Y A AG S
Sbjct: 32 GNDQGVKYSWKKDGKSYNWQEHNAALRKDE-GSLVFLRPQASDEGHYQCFAETPAGVASS 90
Query: 590 TSLDLSLQVLGYIIQQQEKNSLKFTKVATLD---------------------PSTLQYTV 628
+ L + + + + LD T
Sbjct: 91 RVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD 150
Query: 629 ENLR--------------------DKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668
+ R D +Y A+N+ E
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKY--VCTAKNAAVDEEVVLVEYEIKGVTKDNSG 208
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 726
P+ ++ K + ++P +F+N K + +P+ R
Sbjct: 209 YKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
L K E D G Y N +G H ++TV
Sbjct: 269 GKRLLFKTTLPE-DEGVYTCEVDNGVGKPQKHSLKLTV 305
Score = 102 bits (256), Expect = 2e-23
Identities = 85/497 (17%), Positives = 131/497 (26%), Gaps = 159/497 (31%)
Query: 313 PSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRV 368
P+ L +E + ++ W K GK + G+ LV R
Sbjct: 13 PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS---LVFLRP 69
Query: 369 TQDDE--------TDIGVLALNVKSVSKLKWLDFGSG--------GW------------- 399
DE T GV + V S K + + G
Sbjct: 70 QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP 129
Query: 400 -----WF----ESKYKDDSLIKGRNIT-YENNVARFTVVNCSESS-EGRYTCKATNEAGT 448
W + D R IT + FT+V + S +Y C A N A
Sbjct: 130 KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD 189
Query: 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAI 508
E + I + P Q +
Sbjct: 190 EEVVLV----EYEIKGVTKDNSGYKGEP---------------------VPQYVSK---- 220
Query: 509 KLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAI 568
+ Y P ++ KNG ++ + RI TS
Sbjct: 221 --------DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG--- 269
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628
L F
Sbjct: 270 ----------------------------------------KRLLFKTT------------ 277
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688
D+ Y +N VG + + +L ++ AP + ++ E+ V ++G
Sbjct: 278 -LPEDEGVY--TCEVDNGVGKPQKHSLKLTVVS----------APKYEQKPEKVIVVKQG 324
Query: 689 -TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747
+ + KV PAP++VW N KPL S + + D +I +K D G Y
Sbjct: 325 QDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSGLVIKGVKNGDK----GYYGCR 378
Query: 748 ATNELGSATHGARVTVD 764
ATNE G V V+
Sbjct: 379 ATNEHGDKYFETLVQVN 395
Score = 93.1 bits (231), Expect = 3e-20
Identities = 44/256 (17%), Positives = 75/256 (29%), Gaps = 48/256 (18%)
Query: 4 DSATLTI--VKFEDK-DLGDYTISLSNALGQ-----ASATTKVTLLSAPGAPDTPEIVGR 55
L V ED D+ Y + NA K G P
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYV 218
Query: 56 SD-------SSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET 96
S ++ + G + + +D N+ T
Sbjct: 219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFK---------NGKDVNGNPEDRITRHNR--T 267
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI-QEPLKDSV 155
+ + E ++ N +G ++ + V + P Q+P K V
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGK--PQKHSLKLTVVSA-----PKYEQKPEKVIV 320
Query: 156 AGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
VT+ C V+G+P P++ W + + G T ++ +G Y C+
Sbjct: 321 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIK--GVKNGDKGYYGCR 378
Query: 216 ATNEAGTAETSCTLLV 231
ATNE G + V
Sbjct: 379 ATNEHGDKYFETLVQV 394
Score = 89.2 bits (221), Expect = 4e-19
Identities = 61/486 (12%), Positives = 98/486 (20%), Gaps = 177/486 (36%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDI 176
A G +S + + L+CV+ + P P I
Sbjct: 81 AETPAGV-ASSRVISFRK------TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEI 236
W K S
Sbjct: 134 TWKKRLS--------------------------------------------GADPNADVT 149
Query: 237 KESARHIITARGTQRKLVIKRVTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTA 293
R G L VT++D +DI A N + L + +
Sbjct: 150 DFDRRITAGPDGN---LYFTIVTKEDVSDIYKYVCTAKNAAV-DEEVVLVEYEIKGVTKD 205
Query: 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH 352
S + +P + K GK++ +
Sbjct: 206 -----NSGYKGEPVPQYVSKDMMAKAG-DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED 259
Query: 353 IITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIK 412
R+T+ + T L
Sbjct: 260 --------------RITRHNRTSGKRLLFK------------------------------ 275
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472
EG YTC+ N G + ++
Sbjct: 276 ----------------TTLPEDEGVYTCEVDNGVGKPQKHSL------------------ 301
Query: 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532
L + S P+ K + + K
Sbjct: 302 -----------------------KLTVVSAPK-----YEQKPEKVIVVKQGQDVTIPCKV 333
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W N ++ R + + S + I V D Y ATN G
Sbjct: 334 TGLPAPNVVWSHNAKPLSGG---RATVTD--SGLVIKGVKNGDKGYYGCRATNEHGDKYF 388
Query: 593 DLSLQV 598
+ +QV
Sbjct: 389 ETLVQV 394
Score = 63.4 bits (154), Expect = 9e-11
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIF--DGEN 727
+ P+ ++ E +E L ++ + W ++ K + +G
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64
Query: 728 IILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 763
+ L + +D G Y+ A G A+
Sbjct: 65 VFLRPQ----ASDEGHYQCFAETPAGVASSRVISFRK 97
Score = 59.5 bits (144), Expect = 2e-09
Identities = 23/143 (16%), Positives = 35/143 (24%), Gaps = 20/143 (13%)
Query: 640 QVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 699
Q FAE G VA + + + EKT E +L + +
Sbjct: 78 QCFAETPAG---------VASSRVISF-RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNA 127
Query: 700 -PAPSIVWFRNNKPLLSSPKKREI-------FDGENIILELKEADSETDAGDYKVVATNE 751
P P I W + + + DG + + D D Y A N
Sbjct: 128 YPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS-DIYKYVCTAKNA 186
Query: 752 LGSA-THGARVTVDVEKVGRPSI 773
+
Sbjct: 187 AVDEEVVLVEYEIKGVTKDNSGY 209
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 95.8 bits (239), Expect = 6e-24
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRN---ITYENNVARF 199
++ + +V V C + + WY ++ ITYE+ VA
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
V + ++ +G Y CK N+ G + L V+G
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
Score = 80.1 bits (198), Expect = 2e-18
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIIL 730
+ + +E G ++ + K++ + + W+ + L +S K ++ IL
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+K+ D G Y+ N+ G + A + V
Sbjct: 61 YVKDITKL-DDGTYRCKVVNDYGEDSSYAELFV 92
Score = 63.1 bits (154), Expect = 2e-12
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 510 LVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAI 568
+V + K K + + +++W ++ +S+ I ++ + + +
Sbjct: 3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYV 62
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ + D TY N G S L V G
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
Score = 50.0 bits (120), Expect = 8e-08
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 308 FLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ G + ++E QV W ++++ S ++ IT L +
Sbjct: 4 VSGQIMHAV-GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYV 62
Query: 366 KRVTQDDE 373
K +T+ D+
Sbjct: 63 KDITKLDD 70
Score = 49.6 bits (119), Expect = 1e-07
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
Y ++ ITYE+ VA V + ++ +G Y CK N+ G +
Sbjct: 37 YFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Score = 36.1 bits (84), Expect = 0.005
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
E+ A L + D G Y + N G+ S+ ++
Sbjct: 54 EDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 95.9 bits (239), Expect = 6e-24
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE-----FMVWNKIETTS 98
P +P + V S+ + + P+ G P+ Y E E K +
Sbjct: 7 PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L + Y R+AA+N G G S +
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
Score = 51.2 bits (123), Expect = 3e-08
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 587 AGSTSLDLS---------LQVLGYIIQQQEKNS---LKFTKVATLDPSTLQYTVENLRDK 634
S++ + + +L Y + + A T+ L+ +
Sbjct: 17 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 76
Query: 635 SEYYFQVFAENSVGLGP 651
+ Y ++ A N GLG
Sbjct: 77 TTYAVRLAALNGKGLGE 93
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 95.1 bits (237), Expect = 1e-23
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK----GR-NITYENNV 196
P I+ D +T+ C +G PTP++ W I GR +I +++
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+++ + G YT NE G+ + + ++
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 86.6 bits (215), Expect = 1e-20
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 726
PG P + ++ E + + P P + W + + S + R +
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L + + + D G Y + NE GS + + +
Sbjct: 62 LTTLIIMDVQKQ-DGGLYTLSLGNEFGSDSATVNIHI 97
Score = 71.2 bits (175), Expect = 2e-15
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE 561
P P I+ + + V + G P PE++W G +I + R I+
Sbjct: 2 PGIPPKIE---ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN 58
Query: 562 E--TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+T+ I V + D YT++ N GS S +++ +
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 44.2 bits (105), Expect = 9e-06
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 405 YKDDSLIK----GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
I GR +I +++ +++ + G YT NE G+
Sbjct: 40 SCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSA 91
Score = 43.5 bits (103), Expect = 2e-05
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 304 PAV--EFLSKLPSVTLVPHLGD-ATFQVELS-SPDIQVKWLKKGKEIK--ESARHIITSR 357
P + + + +++ G T + P +V W G++I E R I +
Sbjct: 2 PGIPPKIEALPSDISIDE--GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT 59
Query: 358 GTQRKLVIKRVTQDDE 373
L+I V + D
Sbjct: 60 DDLTTLIIMDVQKQDG 75
Score = 38.1 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+D TL I+ + +D G YT+SL N G SAT +
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 95.9 bits (239), Expect = 1e-23
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
G + T P AP S + L WR P D H Y +
Sbjct: 4 GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR 63
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V N + L Y+FRV A N G+G +S
Sbjct: 64 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESS 104
Score = 59.7 bits (145), Expect = 4e-11
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 579 YTVTATNAAGSTSLDLS---------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629
V A+ + + L+ L Y + ++ + T P +Q T++
Sbjct: 22 RDVVAS-LVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQ 80
Query: 630 NLRDKSEYYFQVFAENSVGLGP 651
NL + Y F+V A+N G G
Sbjct: 81 NLMPATVYIFRVMAQNKHGSGE 102
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 95.5 bits (238), Expect = 1e-23
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
+ AP + LK VT C V+G P P I W+KD I ++ Y +
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ +G YT A N G + L+VQ
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
Score = 92.4 bits (230), Expect = 1e-22
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
AP F + + + E + +V +P P I WF++ K + I +
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 728 II--LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
L + + D G+Y ++A N G + R+ V G S
Sbjct: 64 GTCSLHTTASTLD-DDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109
Score = 64.3 bits (157), Expect = 1e-12
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVV 572
LK ++ + G P+P+I W K+G +I+ + T ++ +
Sbjct: 15 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 74
Query: 573 RADTSTYTVTATNAAGSTSLDLSLQVLG 600
D YT+ A N G S L V
Sbjct: 75 LDDDGNYTIMAANPQGRISCTGRLMVQA 102
Score = 47.0 bits (112), Expect = 1e-06
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRG 358
S S+ A F KL + TF ++ +P ++ W K GK+I + H R
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 61
Query: 359 TQ--RKLVIKRVTQDDE 373
L T DD+
Sbjct: 62 LDGTCSLHTTASTLDDD 78
Score = 41.2 bits (97), Expect = 1e-04
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
+KD I ++ Y + + +G YT A N G
Sbjct: 43 FKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCT 95
Score = 38.5 bits (90), Expect = 0.001
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDT 49
+ + +L D G+YTI +N G+ S T ++ + + P +
Sbjct: 62 LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 98.7 bits (246), Expect = 1e-23
Identities = 49/234 (20%), Positives = 80/234 (34%), Gaps = 67/234 (28%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G PRP+I W K G ++++ + I D D
Sbjct: 32 GDPRPKIVWNKKGKKVSNQRFEVIEFD--------------------------------D 59
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
S VL IQ + RD++ Y + A N+VG E
Sbjct: 60 GSGSVL--RIQP----------------------LRTPRDEAIY--ECVASNNVG---EI 90
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+ L P P + K V+ T ++ +P P I WF++ P+
Sbjct: 91 SVS-TRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPV 149
Query: 714 LSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+S I L++++++ D G Y+ VATN G+ + A + V
Sbjct: 150 DTSNNNGRIKQLRSESIGALQIEQSEES-DQGKYECVATNSAGTRYSAPANLYV 202
Score = 95.7 bits (238), Expect = 1e-22
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 113 MFRVAAVNAIGTGPASHNTR-YVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
++ A N +G S +TR V+ + + P I + V + T+ C SG
Sbjct: 78 IYECVASNNVGE--ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 172 PTPDIKWYKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
P P+I W+KD + N ++ + ES +G+Y C ATN AGT +
Sbjct: 136 PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS 195
Query: 226 -SCTLLVQGKEIKESARH 242
L V+G + H
Sbjct: 196 APANLYVRGTK-HHHHHH 212
Score = 87.6 bits (217), Expect = 9e-20
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVAR 198
P D + C +G P P I W K + + + + +
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 199 FTVVNCSESS-EGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITAR 247
+ E Y C A+N G S L V ++ I
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMG 114
Score = 84.5 bits (209), Expect = 9e-19
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 730
P F ++T G + + P P IVW + K + + + F DG +L
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLAQST 790
++ + D Y+ VA+N +G + R+TV E +ID+ Q
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGP-------QLK 118
Query: 791 EVDVTST 797
V+ T T
Sbjct: 119 VVERTRT 125
Score = 72.5 bits (178), Expect = 2e-14
Identities = 35/205 (17%), Positives = 55/205 (26%), Gaps = 50/205 (24%)
Query: 405 YKDDSLIKGRNITY----ENNVARFTVVNCSESS-EGRYTCKATNEAGTAETRTMWPGLP 459
K + + + + + + E Y C A+N G T
Sbjct: 41 NKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVST------ 94
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
+ V R P I PQ +
Sbjct: 95 -RLTVLREDQIPRGFP----------------------TIDMGPQ------------LKV 119
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA---CRIFIDEETSTIAIYSVVRADT 576
+ + G P PEI+W K+ + S + E + I +D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 577 STYTVTATNAAGST-SLDLSLQVLG 600
Y ATN+AG+ S +L V G
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRG 204
Score = 53.3 bits (128), Expect = 5e-08
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 45/191 (23%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSR-GTQRKLV 364
F T V G A+F + + P ++ W KKGK++ +I G+ L
Sbjct: 8 RFTRTPVDQTGVSG-GVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 365 IKRV-TQDDETDIGVLALN----VKSVSKLKWL---DFGSGGWWFESK------------ 404
I+ + T DE +A N + ++L L G +
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 405 ----------------YKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKA 442
+KD + N ++ + ES +G+Y C A
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA 186
Query: 443 TNEAGTAETRT 453
TN AGT +
Sbjct: 187 TNSAGTRYSAP 197
Score = 30.9 bits (70), Expect = 1.3
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 2 EEDSATLTIVKFEDK-DLGDYTISLSNALGQASATTKVTLLSAPGAPDT-PEIV 53
+ + L I D Y SN +G+ S +T++T+L P P I
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112
Score = 28.6 bits (64), Expect = 7.1
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAP 47
E L I + E+ D G Y +N+ G SA + +
Sbjct: 163 SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 95.2 bits (237), Expect = 2e-23
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
G + + P P +S+ + W+ P+ + P+ GY +E + E
Sbjct: 4 GSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGE 61
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
N T+ V L H Y+FRV A + G G + +++ V
Sbjct: 62 LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV--ITIESQVSG 114
Score = 64.0 bits (156), Expect = 2e-12
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 586 AAGSTSLDLSLQ-------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
A G TSL +S Q + GY ++ Q N + ++ +P+ VE+L Y
Sbjct: 28 ALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYV 87
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQA 672
F+V A++ G G E + + + P
Sbjct: 88 FRVRAQSQEGWGREREG---VITIESQVSGPSSG 118
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 102 bits (256), Expect = 2e-23
Identities = 68/417 (16%), Positives = 116/417 (27%), Gaps = 125/417 (29%)
Query: 405 YKDDSLIK----GRNITYENN---VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
++ R + V F E EG Y C A N+ GTA +
Sbjct: 52 TRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN----- 106
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
LQ+ P +
Sbjct: 107 ------------------------------------RIRLQVSKSP-------LWPKENL 123
Query: 518 QRLSVKSQWKVEVK---YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+ V+ + ++ G P P I WM + E R+ + +V+
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQGH-NGDLYFSNVMLQ 181
Query: 575 DTS-TYTVTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTK--------------- 615
D Y+ A T +L+VL + S + +
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241
Query: 616 ---VATLDP------------------------STLQYTVENLRDKSEYYFQVFAENSVG 648
+A+ P L+ T + D EY A N +G
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY--FCLASNKMG 299
Query: 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708
T + A AP +++ + + RL+ + +P P++ W
Sbjct: 300 -SIRHTISVRVKA----------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Query: 709 NNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
N +PL S+P RE+ I + + + Y+ +NE G A V+V
Sbjct: 349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSR----AVYQCNTSNEHGYLLANAFVSV 401
Score = 100 bits (251), Expect = 7e-23
Identities = 51/275 (18%), Positives = 80/275 (29%), Gaps = 49/275 (17%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV----RADTSTYTVTATNAAG- 588
G P P W +N +K R+ + + T+ I Y A N G
Sbjct: 43 GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102
Query: 589 --STSLDLSLQVLGYIIQQQEKN-------SLKFT------------------------- 614
S + L + ++ L
Sbjct: 103 ALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD 162
Query: 615 -KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
+V+ L ++ L+D Y A L T G + P
Sbjct: 163 KRVSQGHNGDLYFSNVMLQDMQTDY-SCNARFHFT-HTIQQKNPFTLKVLTTRGVAERTP 220
Query: 674 LFI---ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
F+ + V + L P P I W++ L S K E F+ L
Sbjct: 221 SFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK---AL 277
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ SE D+G+Y +A+N++GS H V V
Sbjct: 278 RITNV-SEEDSGEYFCLASNKMGSIRHTISVRVKA 311
Score = 97.6 bits (243), Expect = 8e-22
Identities = 63/401 (15%), Positives = 108/401 (26%), Gaps = 108/401 (26%)
Query: 143 EAPVI-QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK----GRNITYENN-- 195
+ P I ++ KD + + ++ +EC G P P W ++ R +
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 196 -VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV----------------------- 231
V F E EG Y C A N+ GTA ++ L
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPL 134
Query: 232 --------------------QGKEIKESARHIITARGTQRKLVIKRVTQ-DDETDIGVLA 270
+ I + R G L V D +TD A
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD---LYFSNVMLQDMQTDYSCNA 191
Query: 271 LNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL 330
+ + + + ++ TP+ + S +V D +
Sbjct: 192 RFHFTHT-----IQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 331 S-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDIG 377
S P + W KKG ++ L I V+++D +
Sbjct: 247 SGVPTPDIAWYKKGGDLPSDKAKFENFNKA---LRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 378 VLALNVKS----VSKLKWLDFGSGG-----------------WWFESKYKDDSLIK---- 412
+++ VK+ + + K L G W + ++
Sbjct: 304 TISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQW-----MVNGEPLQSAPP 358
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
N + F SS Y C +NE G
Sbjct: 359 NPNREVAGDTIIFRDTQ--ISSRAVYQCNTSNEHGYLLANA 397
Score = 95.3 bits (237), Expect = 5e-21
Identities = 58/247 (23%), Positives = 88/247 (35%), Gaps = 19/247 (7%)
Query: 1 MEEDSATLTI----VKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE--IV 53
M S TL I ++ G+Y N G A S ++ + +P P +V
Sbjct: 68 MRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVV 127
Query: 54 GRSDSSVTLHWRPPQDDGH-SPVTGYVLESHDKDEFMVWNKIETTSTTY--EVTKLTTKH 110
+ + +TL PP G SPV ++ S + Y V +
Sbjct: 128 VQEGAPLTLQCNPP--PGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKA--PVDAEAPVIQEP---LKDSVAGFQSSVTLE 165
+Y A N + V V P P + + LE
Sbjct: 186 DY--SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 166 CVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
C+ SGVPTPDI WYK + +EN + N SE G Y C A+N+ G+
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 226 SCTLLVQ 232
+ ++ V+
Sbjct: 304 TISVRVK 310
Score = 89.2 bits (221), Expect = 6e-19
Identities = 40/261 (15%), Positives = 73/261 (27%), Gaps = 59/261 (22%)
Query: 4 DSATLTI--VKFEDKDLGDYTISLSNALGQA---SATTKVTLLSAPGAPDTP-------- 50
+ L V +D DY+ + + +L+ G +
Sbjct: 169 HNGDLYFSNVMLQD-MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQG 227
Query: 51 ---EIVGRSDSSVTL------------HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE 95
+ + L W + G P E+ +K
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWY--KKGGDLPSDKAKFENFNK---------- 275
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
+T ++ + + A N +G+ H V VKA P + K+ +
Sbjct: 276 ----ALRITNVSEEDSGEYFCLASNKMGS--IRHTIS-VRVKAA-----PYWLDEPKNLI 323
Query: 156 AGFQSSVTLECVVSGVPTPDIKWYKDDSLIK----GRNITYENNVARFTVVNCSESSEGR 211
L C +G P P ++W + ++ N + F SS
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQ--ISSRAV 381
Query: 212 YTCKATNEAGTAETSCTLLVQ 232
Y C +NE G + + V
Sbjct: 382 YQCNTSNEHGYLLANAFVSVL 402
Score = 82.6 bits (204), Expect = 7e-17
Identities = 47/330 (14%), Positives = 91/330 (27%), Gaps = 76/330 (23%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366
+ +V + + E +P W + + + ++ R LVI
Sbjct: 19 ITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVID 78
Query: 367 RVTQD-DETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGR------ 414
+ E G A N ++S L W + + +G
Sbjct: 79 FRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQC 138
Query: 415 ---------NITYENNVA-------RFTVV--------NCSES-SEGRYTCKATNEAGTA 449
I + ++ R + N + Y+C A
Sbjct: 139 NPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHT 198
Query: 450 ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIK 509
+ P ++ V + P P + +
Sbjct: 199 IQQKN----PFTLKVLTTRGVAERTPS----------------------FMYPQGTASSQ 232
Query: 510 LVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIY 569
+V L+ L +E G P P+I+W K G ++ + + + I
Sbjct: 233 MV---LRGMDL------LLECIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRIT 280
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+V D+ Y A+N GS +S++V
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVK 310
Score = 81.5 bits (201), Expect = 2e-16
Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 49/195 (25%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
YK + +EN + N SE G Y C A+N+ G+
Sbjct: 257 YKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-------------- 302
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
T ++++++ P K+ L+
Sbjct: 303 ----------------------------HTISVRVKAAPY------WLDEPKNLILAPGE 328
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
++ + G P+P + WM NG + + TI + + Y +
Sbjct: 329 DGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG-DTIIFRDTQISSRAVYQCNTS 387
Query: 585 NAAGSTSLDLSLQVL 599
N G + + VL
Sbjct: 388 NEHGYLLANAFVSVL 402
Score = 68.7 bits (168), Expect = 2e-12
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 671 QAPLFIER-FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGE 726
Q P ++ ++ V + I + + K +PAPS W RN++ + R G
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+I E G+Y+ A N+ G+A ++ R+ V
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
Score = 57.6 bits (139), Expect = 7e-09
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 15/155 (9%)
Query: 622 STLQYTVENLRDKSEY--YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
TL + EY +Q FA N G AL+ L E
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFG---------TALSNRIRLQVSKSPLWPKENL 123
Query: 680 EEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE 738
+ V+E + L P+P I W ++ ++ K+ + L +
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD--LYFSNVMLQ 181
Query: 739 TDAGDYKVVATNELGSAT-HGARVTVDVEKVGRPS 772
DY A T+ V +
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216
Score = 37.9 bits (88), Expect = 0.011
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
E + L I ++D G+Y SN +G T V + +AP D P+ ++
Sbjct: 270 FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED 329
Query: 60 VTLH 63
L
Sbjct: 330 GRLV 333
Score = 28.7 bits (64), Expect = 9.5
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLS 42
T+ + Y + SN G A V++L
Sbjct: 368 TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 95.2 bits (237), Expect = 2e-23
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 34 ATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE-----F 88
++ + P +P + V S+ + + P+ G P+ Y E E
Sbjct: 1 GSSGSS---GPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK 56
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA-EAPVI 147
K + + L + Y R+AA+N G G S + PV AP +
Sbjct: 57 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS--EFKTQPVREPSAPKL 114
Query: 148 Q 148
+
Sbjct: 115 E 115
Score = 49.4 bits (118), Expect = 2e-07
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 587 AGSTSLDLS---------LQVLGYIIQQQEKNS---LKFTKVATLDPSTLQYTVENLRDK 634
S++ + + +L Y + + A T+ L+ +
Sbjct: 18 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 77
Query: 635 SEYYFQVFAENSVGLGP 651
+ Y ++ A N GLG
Sbjct: 78 TTYAVRLAALNGKGLGE 94
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 94.3 bits (235), Expect = 3e-23
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENNVA 197
+ P I + +D SV L V+G W K I+ + N +
Sbjct: 4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ T++ + G YT N+ G+ + L V K
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 88.2 bits (219), Expect = 5e-21
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 667 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 725
GS G P I+ E++ V+ ++ L KV + + W + K + S +
Sbjct: 1 GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 60
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
L + A E G Y ++ N+LGS +TV V+K P+
Sbjct: 61 NGSKLTILAARQE-HCGCYTLLVENKLGSRQAQVNLTV-VDKPDPPA 105
Score = 77.8 bits (192), Expect = 2e-17
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI 559
S PQ + + Q++ ++ K G +WMK +I +S+ ++
Sbjct: 5 SSGPQ------IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 560 DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
E S + I + + YT+ N GS ++L V+
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
Score = 50.8 bits (122), Expect = 6e-08
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLG-DATFQVELS-SPDIQVKWLKKGKEIKESARHIITS 356
S S+ + + + G +++ + I W+K K+I+ES + +
Sbjct: 2 SSGSSGP-QIIQFPEDQKVR--AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 357 RGTQRKLVIKRVTQDDE 373
KL I Q+
Sbjct: 59 SENGSKLTILAARQEHC 75
Score = 46.6 bits (111), Expect = 2e-06
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP 50
E+ + LTI+ + G YT+ + N LG A +T++ P P
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 45.0 bits (107), Expect = 6e-06
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K I+ + N ++ T++ + G YT N+ G+ +
Sbjct: 42 MKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 97.2 bits (242), Expect = 4e-23
Identities = 48/237 (20%), Positives = 79/237 (33%), Gaps = 65/237 (27%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P I W KNG ++ S YTV
Sbjct: 32 GDPPPSIVWRKNGKKV-----------------------SGTQSRYTVLEQP-------- 60
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+ ++ V RD + Y + AEN VG +A
Sbjct: 61 ---------------GGISILRI---------EPVRAGRDDAPY--ECVAENGVG---DA 91
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+ L + +P P+ + + ++ T+ + K +P P+I W +N +
Sbjct: 92 VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 151
Query: 714 LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVG 769
S + + DG I + E D G Y+ VA N +G+ + + V V +VG
Sbjct: 152 DMSNPRYSLKDGFLQIENSR----EEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Score = 93.3 bits (232), Expect = 1e-21
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 7/134 (5%)
Query: 113 MFRVAAVNAIGTGPASHNTRY-VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
+ A N +G S + + A PVI + V +V + C G
Sbjct: 79 PYECVAENGVGD-AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGN 137
Query: 172 PTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
PTP+I W K+ + + + ++ + N E +G+Y C A N GT + T
Sbjct: 138 PTPNIYWIKNQTKVDMSNPRYSLKDGF--LQIENSREEDQGKYECVAENSMGTEHSKATN 195
Query: 230 L-VQGKEIKESARH 242
L V+ + + H
Sbjct: 196 LYVKVRRVGTKHHH 209
Score = 79.1 bits (195), Expect = 8e-17
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 10/130 (7%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENI 728
P I + + + V+ G + P PSIVW +N K + + + + G
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 729 ILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSINSIDIDLNHVHYLA 787
IL ++ + D Y+ VA N +G A + A +T+ I
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP------- 117
Query: 788 QSTEVDVTST 797
+ ++V T
Sbjct: 118 GTRVIEVGHT 127
Score = 78.7 bits (194), Expect = 1e-16
Identities = 25/175 (14%), Positives = 40/175 (22%), Gaps = 56/175 (32%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVA 197
A P I ++ + C G P P I W K+ + G Y +
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 198 RFTVVNCSESSE--GRYTCKATNEAGTA-ETSCTLLVQ---------------------- 232
+ + Y C A N G A TL +
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 233 ------------------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
++ S G L I+ ++D+
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQ 175
Score = 67.5 bits (165), Expect = 6e-13
Identities = 32/213 (15%), Positives = 59/213 (27%), Gaps = 54/213 (25%)
Query: 405 YKDDSLIKGRNITY----ENNVARFTVVNCSESSE--GRYTCKATNEAGTAETRTMWPGL 458
K+ + G Y + + + Y C A N G A
Sbjct: 41 RKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDA--------- 91
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIK-LVDSNLKS 517
+ L I + PA ++ +
Sbjct: 92 --------------------------------VSADATLTIYEGDKTPAGFPVITQGPGT 119
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+ + V + K G P P I W+KN ++ S + ++ + I + D
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN--PRYSLKDG-FLQIENSREEDQG 176
Query: 578 TYTVTATNAAG---STSLDLSLQVLGYIIQQQE 607
Y A N+ G S + +L ++V +
Sbjct: 177 KYECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
Score = 43.6 bits (103), Expect = 8e-05
Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 45/190 (23%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIK--ESARHIITSRGTQRKL 363
E + K + + G A+F P + W K GK++ +S ++ G L
Sbjct: 8 EIIRKPQNQGVRVG-GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 364 VIKRVTQDDETDIGV---LALNV--KSVSK------LKWLDFGSGGWWFESKYKDDSLIK 412
I+ V D +A N +VS + +G +
Sbjct: 67 RIEPVRAGR--DDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 413 GRNITYE---------------NNVA-----RFTVV--------NCSESSEGRYTCKATN 444
G + N + N E +G+Y C A N
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 184
Query: 445 EAGTAETRTM 454
GT ++
Sbjct: 185 SMGTEHSKAT 194
Score = 42.9 bits (101), Expect = 2e-04
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSR 357
+ + + + +P + W+K ++ S
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVG-HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD 162
Query: 358 GTQRKLVIKRVTQDDE 373
G L I+ ++D+
Sbjct: 163 GF---LQIENSREEDQ 175
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 93.3 bits (232), Expect = 6e-23
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 36 TKVTLLSAPGAPD-TPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI 94
+ + P P E ++S TL W+ P P GY+LE D +
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVY 60
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T V L Y RV A N G P S
Sbjct: 61 VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS 94
Score = 51.3 bits (123), Expect = 4e-08
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
GYI++ + N +F +V TV+ L S Y +V A N G+ P ++
Sbjct: 41 ADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPY--SKT 96
Query: 658 VALATHATLGSPGQAP 673
+ L T S G P
Sbjct: 97 LVLQT-----SEGSGP 107
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 98.8 bits (246), Expect = 7e-23
Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 25/246 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALG-QASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
++DS+TLTI D G Y ++ G Q+ AT V + + P +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 60 VTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYM 113
+ P T G + F+V + + ++ + E
Sbjct: 118 AVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLS-----NNYLQIRGIKKTDEGT 169
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
+R + + +V P ++ + ++ A SVTL C G P
Sbjct: 170 YRCEGRILARGEINFKDIQVIVNVPPT----VQARQSIVNATANLGQSVTLVCDADGFPE 225
Query: 174 PDIKWYKDDSLI-----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
P + W KD I + ++ + T+ N ++ E Y C A N+AG + S
Sbjct: 226 PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 285
Query: 229 LLVQGK 234
L V K
Sbjct: 286 LKVFAK 291
Score = 94.2 bits (234), Expect = 2e-21
Identities = 40/270 (14%), Positives = 86/270 (31%), Gaps = 54/270 (20%)
Query: 536 PRPEISWMKNGAEITDSKACRIFI---DEETSTIAIYSVVRADTSTYTVTATNAAGST-S 591
+ISW E RI + D+++ST+ IY+ D Y T G+
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 592 LDLSLQVLGYIIQQQEKNSLKFT----------------------------------KVA 617
+++++ ++ + +F +
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE 677
L + LQ D+ Y + E + + + + P
Sbjct: 151 VLSNNYLQIRGIKKTDEGTY--RCEGRILA--RGEINFKDIQVIVNV-------PPTVQA 199
Query: 678 R--FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELK 733
R T ++ L+ P P++ W ++ +P+ + + ++ IF ++ L ++
Sbjct: 200 RQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIR 259
Query: 734 EADSETDAGDYKVVATNELGSATHGARVTV 763
D D +Y +A N+ G + V
Sbjct: 260 NVDKN-DEAEYVCIAENKAGEQDASIHLKV 288
Score = 73.4 bits (180), Expect = 3e-14
Identities = 56/341 (16%), Positives = 99/341 (29%), Gaps = 102/341 (29%)
Query: 311 KLPSVTLVP-----HLG-DATF--QVELSSPDIQVKWLKKGKEIKESARHIIT---SRGT 359
++ V +VP +G F QV + D + W E + I+ +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 360 QRKLVIKRVTQDDE--------TDIGVLA---LNVKSVSKLKWLD------FGSGG---- 398
L I DD + G + +NVK KL + + F G
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 399 -------------WWFESKYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCK 441
W + R I NN + ++ EG Y C+
Sbjct: 121 VCDVVSSLPPTIIW-----KHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCE 173
Query: 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501
A + + +
Sbjct: 174 GRILARGEIN----------------------------------------FKDIQVIVNV 193
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFI 559
PP ++ S + + ++ + GFP P +SW K+G I + + +
Sbjct: 194 PPT---VQARQS-IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249
Query: 560 DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+++S + I +V + D + Y A N AG + L+V
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 69.1 bits (169), Expect = 6e-13
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 12/124 (9%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
G EAT + Q +F + KE ++ V +S P
Sbjct: 81 VTAEDGTQSEATVNVKIF----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
+I+W + ++ R I N L+++ +TD G Y+ + +
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 763 VDVE 766
V V
Sbjct: 189 VIVN 192
Score = 66.8 bits (163), Expect = 4e-12
Identities = 41/286 (14%), Positives = 82/286 (28%), Gaps = 79/286 (27%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPT-PDIKWYKDDS-LIKGRN-----ITYENNVA 197
+ S C V+G DI W+ + + + +++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSC-TLLVQ------------------------ 232
T+ N + G Y C T E GT + + +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 233 ---------------GKEI--KESARHIITARGTQRKLVIKRVTQDDETDIGV---LALN 272
G+++ K+ R I+ + L I+ + + DE G
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---LQIRGIKKTDE---GTYRCEGRI 176
Query: 273 VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS- 331
+ P V+ + + T T +
Sbjct: 177 --LARGEINFKDIQVIVN-----------VPPTVQARQSIVNATANLG-QSVTLVCDADG 222
Query: 332 SPDIQVKWLKKGKEI----KESARHIITSRGTQRKLVIKRVTQDDE 373
P+ + W K G+ I ++ +HI + ++ L I+ V ++DE
Sbjct: 223 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE--LTIRNVDKNDE 266
Score = 47.2 bits (112), Expect = 1e-05
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 680 EEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKR---EIFDGENIILELKEA 735
+ + + + +V I WF N LS ++R D ++ L + A
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 736 DSETDAGDYKVVATNELGSATHG-ARVTV 763
+ DAG YK V T E G+ + V +
Sbjct: 70 N-IDDAGIYKCVVTAEDGTQSEATVNVKI 97
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 96.4 bits (240), Expect = 9e-23
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 30 GQASATTKVTLLSA------PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESH 83
+ S T+ L P+ EI S+++V LHW D +TGY
Sbjct: 96 NKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYR 155
Query: 84 DKDEFMVWNKIETT---STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
+ K + ++++ L T Y F++ + +A S + +
Sbjct: 156 PSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
Score = 93.0 bits (231), Expect = 1e-21
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET------ 96
+ P P + SD SV L W P++DG P+ + ++ + W
Sbjct: 1 STYPPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 59
Query: 97 --------TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPV 146
S T VT L +H Y FR+ AV + S+ + ++ +
Sbjct: 60 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMP 117
Score = 52.5 bits (126), Expect = 1e-07
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 586 AAGSTSLDLS---------LQVLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKS 635
T++ L + GY + +S ++ K + + L +
Sbjct: 126 EYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETAT 185
Query: 636 EYYFQVFAENSVGLGP 651
Y F++ + ++
Sbjct: 186 MYEFKLQSFSAASASE 201
Score = 47.9 bits (114), Expect = 3e-06
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 598 VLGYIIQQQEKNS------------LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645
++ + +Q + K + + +V +L+ + Y F++ A
Sbjct: 32 IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVY 91
Query: 646 SVGLGPEATTELVALATHATLGSPGQAP 673
S E+ T P P
Sbjct: 92 SNNDNKESNTSAKFYLQPGAALDPMPVP 119
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 93.1 bits (231), Expect = 1e-22
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---------- 91
+ P P + SD SV L W P++DG P+ + ++ + W
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 92 ----NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
N S T VT L +H Y FR+ AV + S+ +
Sbjct: 60 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF 106
Score = 43.4 bits (102), Expect = 2e-05
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 598 VLGYIIQQQEKN------------SLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645
++ + +Q + K + + +V +L+ + Y F++ A
Sbjct: 33 IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVY 92
Query: 646 SVGLGP 651
S
Sbjct: 93 SNNDNK 98
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 100 bits (250), Expect = 1e-22
Identities = 47/267 (17%), Positives = 87/267 (32%), Gaps = 45/267 (16%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA-DTSTYTVTATNAAG---S 589
G P+P I W NG ++ R + + ++ I + + D TY ATN+ G S
Sbjct: 34 GNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQCIATNSFGTIVS 91
Query: 590 TSLDLSLQVLGYIIQQ-------QEKNSLKFT--------------------------KV 616
L L + + + +
Sbjct: 92 REAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRF 151
Query: 617 ATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676
+ + L D Y N+V + + + + + +
Sbjct: 152 VSQETGNLYIAKVEKSDVGNY--TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV 209
Query: 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 736
+ E ++ T++L +P P+I+W R + ++ +R +G ILE+
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQ 266
Query: 737 SETDAGDYKVVATNELGSATHGARVTV 763
E DAG Y+ VA N G ++T
Sbjct: 267 QE-DAGSYECVAENSRGKNVAKGQLTF 292
Score = 98.8 bits (246), Expect = 3e-22
Identities = 66/375 (17%), Positives = 108/375 (28%), Gaps = 114/375 (30%)
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
G Y C ATN GT +R
Sbjct: 75 AGTYQCIATNSFGTI-----------------------------------------VSRE 93
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK---YFGFPRPEISWMKNGAEITD 551
LQ +SV+ + + +W+ N
Sbjct: 94 AKLQFAYLEN-------FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ 146
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-----STSLDLSLQVLGYIIQQQ 606
R F+ +ET + I V ++D YT TN L L+ G + + +
Sbjct: 147 DN--RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
Query: 607 EKNSLKFTK--------------VATLDP------------------------STLQYTV 628
K ++F + A +P L+
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN 264
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688
D Y + AENS G A +L A P +++ + V +
Sbjct: 265 FQQEDAGSY--ECVAENSRG-KNVAKGQLTFYA----------QPNWVQIINDIHVAMEE 311
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748
++ K P P+ W +N PLL+ + +I G I + +D+ G Y+ VA
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPLLTRD-RIQIEQGTLNITIVNLSDA----GMYQCVA 366
Query: 749 TNELGSATHGARVTV 763
N+ G A ++V
Sbjct: 367 ENKHGVIFSSAELSV 381
Score = 98.0 bits (244), Expect = 6e-22
Identities = 49/257 (19%), Positives = 84/257 (32%), Gaps = 51/257 (19%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQA---SATTKVTLLSAPGAPDTP--------- 50
+++ L I K E D+G+YT ++N + T + L + +
Sbjct: 154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 51 EIVGRSDSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
+ ++V L WR + DG + ++
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWR--RADGKPIARK--------------ARRHKSN 257
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
E+ + + A N+ G + + A P + + D
Sbjct: 258 GILEIPNFQQEDAGSYECVAENSRGK--NVAKGQ-LTFYAQ-----PNWVQIINDIHVAM 309
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDS-LIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+ SV EC +G P P +W K+ L+ I E T+VN S G Y C A
Sbjct: 310 EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVN--LSDAGMYQCVAE 367
Query: 218 NEAGTAETSCTLLVQGK 234
N+ G +S L V +
Sbjct: 368 NKHGVIFSSAELSVIAE 384
Score = 97.6 bits (243), Expect = 6e-22
Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 9/233 (3%)
Query: 7 TLTIVKF-EDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE--IVGRSDSSVTL 62
+L I + +D G Y +N+ G S K+ + R + L
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122
PP G ++ + + + T Y + K+ + N +
Sbjct: 123 LCGPPPHSG-ELSYAWIFNEYPSYQDNRRFVSQETGNLY-IAKVEKSDVGNYTCVVTNTV 180
Query: 123 GTGPASHNTRYVVVK---APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
++++ + E + + + A ++V LEC G P P I W
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ D R + + N + G Y C A N G L
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
Score = 87.2 bits (216), Expect = 2e-18
Identities = 58/397 (14%), Positives = 95/397 (23%), Gaps = 107/397 (26%)
Query: 142 AEAPVIQEPLKDSVAGFQS---SVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENN 195
PV + + S V L C V G P P I+W + + + + +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQGKE------------------- 235
N G Y C ATN GT + L E
Sbjct: 63 SLLINNPN-KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 236 -----------------------IKESARHIITARGTQRKLVIKRVTQDDETDIGVLALN 272
+++ R + G L I +V + D + + N
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCVVTN 178
Query: 273 -VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS 331
V + L + + + P +
Sbjct: 179 TVTNHKVLGPPTPLILRNDG--------VMGEYEPKIEVQFPETVPAEKGTTVKLECFAL 230
Query: 332 -SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDIGV 378
+P + W + + S G L I Q+D ++
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGI---LEIPNFQQEDAGSYECVAENSRGKNVAK 287
Query: 379 LALNVKS----VSKLKWLDFGSGG-----------------WWFESKYKDDS-LIKGRNI 416
L + V + + W K+ L+ I
Sbjct: 288 GQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW-----LKNGDPLLTRDRI 342
Query: 417 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
E T+VN S G Y C A N+ G +
Sbjct: 343 QIEQGTLNITIVN--LSDAGMYQCVAENKHGVIFSSA 377
Score = 76.4 bits (188), Expect = 6e-15
Identities = 49/338 (14%), Positives = 82/338 (24%), Gaps = 101/338 (29%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
F ++ S V S ++ W+ + R ++ L
Sbjct: 103 NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLY 160
Query: 365 IKRVTQDDETDIGV-------LALNVKSVSKLKWLDFGSGGWWFESK------------- 404
I +V ++D+G N K + L + G E +
Sbjct: 161 IAKVE---KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 405 ----------------------YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 442
+ D R + + N + G Y C A
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVA 277
Query: 443 TNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502
N G L +
Sbjct: 278 ENSRGKNVA------------------------------------------KGQLTFYAQ 295
Query: 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE 562
P + ++++ E K G P+P W+KNG + RI I++
Sbjct: 296 PN------WVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD--RIQIEQ- 346
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
T+ I V +D Y A N G L V+
Sbjct: 347 -GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/327 (14%), Positives = 88/327 (26%), Gaps = 83/327 (25%)
Query: 332 SPDIQVKWLKKGKEIKESA-RHIITSRGTQRKLVIKRVTQDDETDIGV---LALNV--KS 385
+P ++W G ++ G+ L+I + D G +A N
Sbjct: 35 NPKPHIRWKLNGTDVDIGMDFRYSVVDGS---LLINNPNKTQ--DAGTYQCIATNSFGTI 89
Query: 386 VSKLKWLDFGSGGWWFESKYKDDSLIKGRN---------------ITYENN-------VA 423
VS+ L F + S+ +G+ + N
Sbjct: 90 VSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNR 149
Query: 424 RFTVV--------NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKP 475
RF +S G YTC TN + P +++ +P
Sbjct: 150 RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP----PTPLILRNDGVMGEYEP 205
Query: 476 PMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF 535
+++Q P PA + +K +E G
Sbjct: 206 K--------------------IEVQFPETVPA--EKGTTVK-----------LECFALGN 232
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
P P I W + + KA + + I + + D +Y A N+ G
Sbjct: 233 PVPTILWRRADGKPIARKA---RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ 289
Query: 596 LQVLG--YIIQQQEKNSLKFTKVATLD 620
L +Q + + +
Sbjct: 290 LTFYAQPNWVQIINDIHVAMEESVFWE 316
Score = 64.1 bits (156), Expect = 6e-11
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 669 PGQAPLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-D 724
PG P+F++ E+ ++L +VK +P P I W N + R D
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
G +I + DAG Y+ +ATN G+ + A++
Sbjct: 62 GSLLINNPNK---TQDAGTYQCIATNSFGTIVSREAKLQF 98
Score = 37.1 bits (86), Expect = 0.018
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
+ + L I F+ +D G Y N+ G+ A ++T + P I + S
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEES 312
Query: 60 VTLH 63
V
Sbjct: 313 VFWE 316
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 91.2 bits (227), Expect = 2e-22
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENNVARFT 200
P I + + LE G P P W DS + +++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + G Y K NE G E ++VQ
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 83.1 bits (206), Expect = 1e-19
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P + + +K T L +P P+ W + +P+ +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
A D+G+YK+ NELG V V
Sbjct: 62 FPSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
Score = 74.3 bits (183), Expect = 2e-16
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
+EV + G P P +W + + + T++I S RAD+ Y + N
Sbjct: 21 NLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE 80
Query: 587 AGSTSLDLSLQV 598
G + V
Sbjct: 81 LGEDEAIFEVIV 92
Score = 47.7 bits (114), Expect = 4e-07
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 323 DATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
+V+ +PD W + ++ ++ + + + D
Sbjct: 19 THNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADS 70
Score = 45.0 bits (107), Expect = 4e-06
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
DS + +++ + + G Y K NE G E
Sbjct: 37 TVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEA 86
Score = 40.4 bits (95), Expect = 1e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ + ++ + D G+Y + + N LG+ A +V
Sbjct: 54 KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 98.5 bits (245), Expect = 2e-22
Identities = 59/372 (15%), Positives = 98/372 (26%), Gaps = 103/372 (27%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
KD + + R V+N S G Y+C+ ++
Sbjct: 44 VKDGTGLVPSERVLVGP-QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSV-----RVTDA 97
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
D + + P+ + + ++ + P + ++
Sbjct: 98 PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP-------AANTVR-------- 142
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
++ G P P ISW+KNG E
Sbjct: 143 -FRCPAA--GNPTPSISWLKNGREFRGE-------------------------------- 167
Query: 585 NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644
+G I + ++ SL V D+ Y E
Sbjct: 168 ------------HRIGGIKLRHQQWSLVMESV-------------VPSDRGNY--TCVVE 200
Query: 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 704
N G T L L SP + L +T + KV + P I
Sbjct: 201 NKFGS-IRQTYTLDVLER-----SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI 254
Query: 705 VWFR----NNKPLLSSPKKR---------EIFDGENIILELKEADSETDAGDYKVVATNE 751
W + N + D E +L L + DAG+Y +A N
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNS 313
Query: 752 LGSATHGARVTV 763
+G + H A + V
Sbjct: 314 IGFSHHSAWLVV 325
Score = 91.2 bits (226), Expect = 5e-20
Identities = 33/245 (13%), Positives = 57/245 (23%), Gaps = 60/245 (24%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P W+K+G + S+ + + + + D+ Y+
Sbjct: 35 GGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLTQRVL--- 87
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
V P +
Sbjct: 88 -----------------------------------------------CHFSVRVTDAPSS 100
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEK----TVKEKGTIRLMAKVKASPAPSIVWFRN 709
+ G AP + V T+R +P PSI W +N
Sbjct: 101 GDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN 160
Query: 710 NKPL-LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768
+ + L ++ D G+Y V N+ GS + V
Sbjct: 161 GREFRGEHRIGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQTYTLDVLERSP 219
Query: 769 GRPSI 773
RP +
Sbjct: 220 HRPIL 224
Score = 85.4 bits (211), Expect = 4e-18
Identities = 42/277 (15%), Positives = 75/277 (27%), Gaps = 45/277 (16%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPEIVGRSDSS 59
+ L ++ +D G Y+ + +VT + G + E
Sbjct: 56 VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115
Query: 60 VTL--HWRPPQDD---------GHS-----PVTGY----VLESHDKDEFMVWNKIETTST 99
T +W P+ ++ P G + + EF ++I
Sbjct: 116 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL 175
Query: 100 TYEV-----TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
++ + + N G+ + V + +
Sbjct: 176 RHQQWSLVMESVVPSDRGNYTCVVENKFGS--IRQTYT-LDVLERSPHRPILQAGLPANQ 232
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDS----------------LIKGRNITYENNVAR 198
A S V C V P I+W K L T + +
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
++ N + G YTC A N G + S L+V E
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 77.7 bits (191), Expect = 1e-15
Identities = 41/236 (17%), Positives = 62/236 (26%), Gaps = 52/236 (22%)
Query: 142 AEAPVIQ-EPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARF 199
AE P + + V G +V L C G P W KD + + R
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP-QRL 63
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVT 259
V+N S G Y+C+ + + A T T
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123
Query: 260 QDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVP 319
+ + D + VP
Sbjct: 124 RPERMD-----------------------------------------------KKLLAVP 136
Query: 320 HLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQDDE 373
F+ + +P + WLK G+E + R I R Q LV++ V D
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 192
Score = 65.8 bits (160), Expect = 1e-11
Identities = 34/212 (16%), Positives = 62/212 (29%), Gaps = 60/212 (28%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
K+ +G + I + + + S G YTC N+ G+
Sbjct: 158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ--------- 208
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T L + I +Q
Sbjct: 209 ---------------------------------TYTLDVLERSPHRPILQA-GLPANQTA 234
Query: 521 SVKSQWKVEVKYFGFPRPEISWMK----NGAEITDSKACRIFI---------DEETSTIA 567
+ S + K + +P I W+K NG+++ + + D+E ++
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+++V D YT A N+ G + L VL
Sbjct: 295 LHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 59.2 bits (143), Expect = 2e-09
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 666 LGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF 723
+G + P +E+ V G + L P VW ++ L P +R +
Sbjct: 1 MGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--VPSERVLV 58
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
+ L++ A E D+G Y H + D G
Sbjct: 59 GPQR--LQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDE 104
Score = 55.0 bits (132), Expect = 4e-08
Identities = 53/337 (15%), Positives = 78/337 (23%), Gaps = 131/337 (38%)
Query: 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS 183
G V AP + + L A ++V C +G PTP I W K+
Sbjct: 105 DGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAA--NTVRFRCPAAGNPTPSISWLKN-- 160
Query: 184 LIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARH- 242
G+E + R
Sbjct: 161 -------------------------------------------------GREFRGEHRIG 171
Query: 243 IITARGTQRKLVIKRVTQDDETDIGV---LALN----VKSVSKLKWLARWTSDLESTAWF 295
I R Q LV++ V D G + N ++ L L R
Sbjct: 172 GIKLRHQQWSLVMESVVPSDR---GNYTCVVENKFGSIRQTYTLDVLER----------- 217
Query: 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHII 354
S + LP+ D F + S ++WLK +
Sbjct: 218 ------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 271
Query: 355 TSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414
T T K T + + VL
Sbjct: 272 TPYVTVLKTAGANTTDKE---LEVL----------------------------------- 293
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
++ N + G YTC A N G +
Sbjct: 294 -----------SLHNVTFEDAGEYTCLAGNSIGFSHH 319
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 90.9 bits (226), Expect = 3e-22
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE--T 96
+ S PG P T I + ++ L W PP++ + GY L+ DE N I+
Sbjct: 3 SGSSGPGRP-TMMISTTAMNTALLQWHPPKELP-GELLGYRLQYCRADEAR-PNTIDFGK 59
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+ VT L Y+FR+AA N G G ++ P D P
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF----EKEIRTPEDLSGP 104
Score = 59.3 bits (144), Expect = 5e-11
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
+LGY +Q + + + +TV L + Y F++ A+N GLG E E+
Sbjct: 37 LLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95
Query: 658 V 658
Sbjct: 96 R 96
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 92.6 bits (230), Expect = 4e-22
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 116 VAAVNAIGTGP--------ASHNTRYVVVKAPVD-AEAPVIQEPLKDSVAGFQSSVTLEC 166
++ A G+ P + ++ A P + + D S+ +C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 167 VVSGVPTPDIKWYKDDSLIK-GRNITY---ENNVARFTVVNCSESSEGRYTCKATNEAGT 222
V G P P++ W+KDD+ +K R+ E T+ + +YTCKA N G
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 223 AETSCTLLVQGKE 235
A + LLV+
Sbjct: 124 ATCTAELLVETMG 136
Score = 83.7 bits (207), Expect = 4e-19
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 628 VENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
+ + N V L +A P P F + + V E
Sbjct: 4 MSGRKASGSSPTSPINANKVE---NEDAFLEEVAEE----KPHVKPYFTKTILDMEVVEG 56
Query: 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-LELKEADSETDAGDYKV 746
R KV+ P P ++WF+++ P+ S + +D E L + E + D Y
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD-DDAKYTC 115
Query: 747 VATNELGSATHGARVTVDV 765
A N LG AT A + V+
Sbjct: 116 KAVNSLGEATCTAELLVET 134
Score = 64.1 bits (156), Expect = 3e-12
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVR 573
+ + S + + K G+P PE+ W K+ + +S+ +I DEE ++ I V
Sbjct: 48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQV 598
D + YT A N+ G + L V
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAELLV 132
Score = 44.8 bits (106), Expect = 1e-05
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQR-KLV 364
F + + V A F ++ PD +V W K +KES I L
Sbjct: 43 YFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 365 IKRVTQDDE 373
I V DD+
Sbjct: 102 ISEVCGDDD 110
Score = 41.4 bits (97), Expect = 2e-04
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 405 YKDDSLIK-GRNITY---ENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
+KDD+ +K R+ E T+ + +YTCKA N G A
Sbjct: 76 FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127
Score = 35.2 bits (81), Expect = 0.028
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE 51
EE + +LTI + D YT N+LG+A+ T ++ + + +
Sbjct: 94 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 91.0 bits (226), Expect = 5e-22
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYEN 194
+ + PVI++ + + L CV +G P P I W KD L+ R EN
Sbjct: 2 SSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
V + GRYTC A+ +G A S + VQ
Sbjct: 62 GV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99
Score = 79.8 bits (197), Expect = 4e-18
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 667 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G P+ + +TV GT L SP P+I+W ++ + + + +
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL- 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
EN +L+++ A D G Y +A+ G AT A + V
Sbjct: 60 -ENGVLQIRYA-KLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 58.6 bits (142), Expect = 1e-10
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P I W K+G ++ + RI E + I DT YT A+ +G +
Sbjct: 33 TGSPVPTILWRKDGVLVSTQDS-RIKQLE-NGVLQIRYAKLGDTGRYTCIASTPSGEATW 90
Query: 593 DLSLQVLGY 601
++V +
Sbjct: 91 SAYIEVQEF 99
Score = 37.4 bits (87), Expect = 0.003
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 405 YKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
KD L+ R EN V + GRYTC A+ +G A
Sbjct: 43 RKDGVLVSTQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAY 93
Score = 34.7 bits (80), Expect = 0.028
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE 51
++ L I + D G YT S G+A+ + + + P
Sbjct: 60 ENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPR 107
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 93.7 bits (233), Expect = 6e-22
Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 39/211 (18%)
Query: 37 KVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD-----EFMVW 91
+ P +P V S+ + + P+ G P+ Y E
Sbjct: 2 PLAQADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 92 NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
K + + L + Y R+AA+N G G S + L
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA-----ASEFKTQPVREPSAPKL 115
Query: 152 KDSVAGFQSSVTLECVVSGVPTPDIKWYKDD---SLIKGRNITYENNVARFTVVNCSESS 208
+ + +S+ + K D S I+ + Y + + S
Sbjct: 116 EGQMGEDGNSIKV------------NLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSG 163
Query: 209 EGRYTCK-------------ATNEAGTAETS 226
K A N+ G ++ +
Sbjct: 164 SDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 194
Score = 92.2 bits (229), Expect = 2e-21
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 29 LGQASATTKVTLLSA--PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDK 85
LG+ SA ++ P AP +G +S+ ++ DDG SP+ Y++
Sbjct: 93 LGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALS 151
Query: 86 DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
E+ ++ + S + L EY V A N G A+H
Sbjct: 152 SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAH 195
Score = 54.4 bits (131), Expect = 2e-08
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 586 AAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
S+ ++L + Y+++ + +S ++ L + +++L +EY
Sbjct: 120 GEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS-EWKPEIRLPSGSDHVMLKSLDWNAEY 178
Query: 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671
V AEN G A T +
Sbjct: 179 EVYVVAENQQGKSKAAHF------VFRTAAAHHH 206
Score = 53.3 bits (128), Expect = 5e-08
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 598 VLGYIIQQQEKNSLKFTKV---ATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654
+L Y + + + A T+ L+ ++ Y ++ A N GLG +
Sbjct: 39 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 98
Query: 655 TELVA 659
Sbjct: 99 ASEFK 103
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 93.4 bits (232), Expect = 8e-22
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 118 AVNAIGTGPASHNTRYVVVKAP--VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD 175
+ T ++ I KD A +VTLEC G P PD
Sbjct: 85 VSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144
Query: 176 IKWYKDDS-LIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
I+W K + I+ V + N EG Y C+A N G + + VQ
Sbjct: 145 IRWRKVLEPMPSTAEISTSGAV--LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 76.8 bits (189), Expect = 3e-16
Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
Query: 642 FAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 701
F + ++ + L + + +F++ + L +P
Sbjct: 84 FVSSPSI-TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV 142
Query: 702 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
P I W + +P+ S+ + +L++ D G Y+ A N G H AR+
Sbjct: 143 PDIRWRKVLEPMPSTAE----ISTSGAVLKIFNI-QLEDEGIYECEAENIRGKDKHQARI 197
Query: 762 TV 763
V
Sbjct: 198 YV 199
Score = 63.4 bits (154), Expect = 1e-11
Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 44/202 (21%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
W ++ K R ++ N N S +G Y+C ++ + T +
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIA--NVEASDKGNYSCFVSSPSITKSVFS----- 96
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
++ + + T+ P I +
Sbjct: 97 KFIPLIPIPERTTKPYPA---------------------DIVVQFK------------DV 123
Query: 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578
+ +E G P P+I W K + + I + + I+++ D
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA----EISTSGAVLKIFNIQLEDEGI 179
Query: 579 YTVTATNAAGSTSLDLSLQVLG 600
Y A N G + V
Sbjct: 180 YECEAENIRGKDKHQARIYVQA 201
Score = 50.7 bits (121), Expect = 3e-07
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 15/97 (15%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPD--IKWYKDDSLIKGRNITYENNVARFTVV 202
P E + + L C D +W + + + RF
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLN-----EFPVFITMDKRRFVSQ 63
Query: 203 --------NCSESSEGRYTCKATNEAGTAETSCTLLV 231
N S +G Y+C ++ + T +
Sbjct: 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
Score = 50.3 bits (120), Expect = 4e-07
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIIL 730
P E E VKE + L+ S W N P+ + KR N L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ +D G+Y ++ + + ++
Sbjct: 69 YIANV-EASDKGNYSCFVSSPSITKSVFSKFIP 100
Score = 49.1 bits (117), Expect = 1e-06
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
W+ N + + R F+ + + I +V +D Y+ ++ + + S+
Sbjct: 38 DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK 97
Query: 596 LQVL 599
L
Sbjct: 98 FIPL 101
Score = 29.9 bits (67), Expect = 2.4
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ A L I + +D G Y N G+ ++
Sbjct: 160 ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 28.3 bits (63), Expect = 8.6
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLL----SAPGAPDTPEIVGRS--- 56
+ L I E D G+Y+ +S+ S +K L P +IV +
Sbjct: 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123
Query: 57 ----DSSVTLH 63
+VTL
Sbjct: 124 YALMGQNVTLE 134
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 92.1 bits (229), Expect = 2e-21
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 45/164 (27%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN--ITYENNVARF 199
+APVI PL+ A + T C V P P+I W ++ LIK + + N
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLV---------------------------- 231
T+++ +S +G Y C A N G A SC L
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 232 ------------QGKEIKESARHIITARGTQRKLVIKRVTQDDE 263
++E++R + G+ L I V ++D
Sbjct: 125 MGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDA 165
Score = 86.7 bits (215), Expect = 1e-19
Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 12/143 (8%)
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK 152
I + + + ++ A N +G V P I P
Sbjct: 56 SIRENGQLLTILSVEDSDDGIYCCTANNGVGG-AVESCGALQV------KMKPKITRPPI 108
Query: 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEG 210
+ L C G P P + W K DS ++ R E+ + N + G
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS--LRIHNVQKEDAG 166
Query: 211 RYTCKATNEAGTAETSCTLL-VQ 232
+Y C A N GTA + L V+
Sbjct: 167 QYRCVAKNSLGTAYSKLVKLEVE 189
Score = 82.1 bits (203), Expect = 4e-18
Identities = 44/269 (16%), Positives = 75/269 (27%), Gaps = 82/269 (30%)
Query: 498 QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI 557
++ P + + L++ V+ +P+PEISW +N I
Sbjct: 3 KLPKAPV------ITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILI-------- 48
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVA 617
+ + Y++ L V
Sbjct: 49 ---------------KLFDTRYSIRENG-----------------------QLLTILSV- 69
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE 677
D Y A N VG E+ L P
Sbjct: 70 ------------EDSDDGIY--CCTANNGVGGAVESCGALQVKM----------KPKITR 105
Query: 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS 737
+ E L +P PS+ W + + L + + + G I +
Sbjct: 106 PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNV----Q 161
Query: 738 ETDAGDYKVVATNELGSA-THGARVTVDV 765
+ DAG Y+ VA N LG+A + ++ V+V
Sbjct: 162 KEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 76.3 bits (188), Expect = 5e-16
Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 55/200 (27%)
Query: 405 YKDDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
++ LIK + + N T+++ +S +G Y C A N G A
Sbjct: 42 TRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC--------- 92
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
LQ++ P+ + + ++
Sbjct: 93 --------------------------------GALQVKMKPK------ITRPPINVKIIE 114
Query: 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
+ + G P+P +SW+K + + ++ RI + E+ ++ I++V + D Y
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENS--RIAV-LESGSLRIHNVQKEDAGQYRCV 171
Query: 583 ATNAAG---STSLDLSLQVL 599
A N+ G S + L ++V
Sbjct: 172 AKNSLGTAYSKLVKLEVEVF 191
Score = 67.1 bits (164), Expect = 6e-13
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
+AP+ E + M V++ P P I W RN + + I + +L
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ-LL 64
Query: 731 ELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSI 773
+ ++D G Y A N +G A + V + +P I
Sbjct: 65 TILSV-EDSDDGIYCCTANNGVGGAVESCGALQVKM----KPKI 103
Score = 46.3 bits (110), Expect = 9e-06
Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 48/186 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKES-ARHIITSRGTQRKLV 364
+ L +V + ATF + P ++ W + IK R+ I G L
Sbjct: 9 VITTPLETVDALVE-EVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLT 65
Query: 365 IKRVTQDD-------------ETDIGVLALNVKS----VSKLKWLDFGSGG--------- 398
I V D AL VK + G
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTM 125
Query: 399 --------WWFESKYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
W K DS ++ R E+ + N + G+Y C A N GT
Sbjct: 126 GNPKPSVSW-----IKGDSALRENSRIAVLESGS--LRIHNVQKEDAGQYRCVAKNSLGT 178
Query: 449 AETRTM 454
A ++ +
Sbjct: 179 AYSKLV 184
Score = 31.2 bits (71), Expect = 0.75
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDS 58
+ E+ LTI+ ED D G Y + +N +G A + + + P P +
Sbjct: 57 IRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGL 116
Query: 59 SVTLH 63
L
Sbjct: 117 KAVLP 121
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 89.1 bits (221), Expect = 2e-21
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTSTTY 101
P P + S S L DDG +P+ Y+++ KD+ W K++
Sbjct: 9 PSPP-SIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHI 66
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE 143
+ L Y ++ A N +G + + K + +
Sbjct: 67 ILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
Score = 55.6 bits (134), Expect = 1e-09
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L YI++ + K+ + + +E+L+ Y Q+ A N +G
Sbjct: 38 ILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSE 91
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 87.5 bits (217), Expect = 6e-21
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 141 DAEAPVIQEPLK----DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITY 192
+ AP K ++V C G P P ++W K+ K +
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
N + + S +G YTC NE G+ + L V
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 70.9 bits (174), Expect = 3e-15
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 671 QAPLFIERF----EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDG 725
+AP + V T++ +P P++ W +N K +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
++ L ++ D G+Y V NE GS H + V
Sbjct: 63 QHWSLIMESVVPS-DKGNYTCVVENEYGSINHTYHLDV 99
Score = 64.0 bits (156), Expect = 9e-13
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + + ++ + SVV +D YT N GS +
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 593 DLSLQVL 599
L V+
Sbjct: 94 TYHLDVV 100
Score = 42.4 bits (100), Expect = 3e-05
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K+ K + N + + S +G YTC NE G+
Sbjct: 43 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Score = 41.3 bits (97), Expect = 9e-05
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 313 PSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESAR-HIITSRGTQRKLVIKRVTQ 370
+ VP F+ +P ++WLK GKE K+ R R L+++ V
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 74
Query: 371 DDE 373
D+
Sbjct: 75 SDK 77
Score = 32.8 bits (75), Expect = 0.074
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLL 41
+ +L + D G+YT + N G + T + ++
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 87.9 bits (218), Expect = 6e-21
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
G + + P AP V S V L WRPP + + + + +
Sbjct: 4 GSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPP-AEAKGNIQTFTVFFSREGDNR 62
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
N + S V L + Y FRV A N G G +S
Sbjct: 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS 103
Score = 59.7 bits (145), Expect = 5e-11
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ + + + + + T P +LQ TV NL+ ++ Y F+V A N G G
Sbjct: 47 NIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGE 101
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 87.8 bits (218), Expect = 6e-21
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEP--LKDSV---AGFQSSVTLECVVSGVPTPDIKWY 179
S T V AE P I+ P L+ + G + L G P P + W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVG--EQLNLVVPFQGKPRPQVVWT 59
Query: 180 KDDSLIKGRNITYEN--NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
K + + + F V + S G Y E + + V K
Sbjct: 60 KGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 81.7 bits (202), Expect = 9e-19
Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD 551
T + I+ + P I+L ++ V Q + V + G PRP++ W K GA +
Sbjct: 8 TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT 67
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
S+ + + + + R+D+ Y ++ + + ++V+
Sbjct: 68 SRV-HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 69.3 bits (170), Expect = 2e-14
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 648 GLGPEATTELVALATHATLGSPGQAPLFI--ERFEEKTVKEKG-TIRLMAKVKASPAPSI 704
G T LA T+ + P + +++ G + L+ + P P +
Sbjct: 2 SSGSSGT-----LAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56
Query: 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
VW + PL +S D + + +++A D+G+Y++ E T R+ V
Sbjct: 57 VWTKGGAPLDTSRVHVRTSDF-DTVFFVRQAARS-DSGEYELSVQIENMKDTATIRIRV- 113
Query: 765 VEKVG 769
VEK G
Sbjct: 114 VEKAG 118
Score = 43.9 bits (104), Expect = 2e-05
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG 45
+ + + D G+Y +S+ + +AT ++ ++ G
Sbjct: 75 SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
Score = 42.0 bits (99), Expect = 7e-05
Identities = 7/49 (14%), Positives = 11/49 (22%), Gaps = 2/49 (4%)
Query: 405 YKDDSLIKGRNITYEN--NVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K + + + F V + S G Y E
Sbjct: 59 TKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTA 107
Score = 38.5 bits (90), Expect = 0.001
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSR 357
E P + L + V P QV W K G + +++R + +
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL-DTSRVHVRTS 75
Query: 358 GTQRKLVIKRVTQDD 372
+++ + D
Sbjct: 76 DFDTVFFVRQAARSD 90
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 87.1 bits (216), Expect = 8e-21
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYEN 194
+ + P+I + + + L+C +G P P I W K+ R E
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ N S G YTC AT+ +G S L V
Sbjct: 62 GT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 73.6 bits (181), Expect = 4e-16
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 667 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G P+ ++ +T+ GT L K P P I W + + I
Sbjct: 1 GSSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ- 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
E L++K +D G Y VAT+ G + A + V
Sbjct: 60 -EQGTLQIKNL-RISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 59.3 bits (144), Expect = 4e-11
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW+K G R I E+ T+ I ++ +DT TYT AT+++G TS
Sbjct: 34 GDPLPVISWLKEGFTFPGRDP-RATIQEQ-GTLQIKNLRISDTGTYTCVATSSSGETSWS 91
Query: 594 LSLQVLG 600
L V
Sbjct: 92 AVLDVTE 98
Score = 35.4 bits (82), Expect = 0.009
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 405 YKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
K+ R E + N S G YTC AT+ +G +
Sbjct: 43 LKEGFTFPGRDPRATIQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAV 93
Score = 29.3 bits (66), Expect = 1.6
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ TL I D G YT +++ G+ S + +
Sbjct: 60 EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 90.5 bits (225), Expect = 8e-21
Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 31/201 (15%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT---STT 100
P AP I +HW D SP+ Y ++ + W+ + +
Sbjct: 6 PNAPKLTGIT-CQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
V +++ Y FRV A N IG P S ++ + V + P D+V G +
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNP-------DNVVGQGT 116
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITY--ENNVARFTVVNCSESSEGRYTCK--- 215
V+S P P+I+ + +++ + A + N + +
Sbjct: 117 EPN-NLVISWTPMPEIEHN---APNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQP 172
Query: 216 ----------ATNEAGTAETS 226
A N+ G + +
Sbjct: 173 TFVKYLIKVVAINDRGESNVA 193
Score = 52.8 bits (127), Expect = 6e-08
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 598 VLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L Y IQ + + P+T V + + Y F+V A N +G P
Sbjct: 35 ILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASP 89
Score = 52.4 bits (126), Expect = 7e-08
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 597 QVLGYIIQ-QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
Y + +++ + + D + + +Y +V A N G A
Sbjct: 136 PNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAE 195
Query: 656 ELVA 659
E+V
Sbjct: 196 EVVG 199
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 92.3 bits (229), Expect = 1e-20
Identities = 31/240 (12%), Positives = 59/240 (24%), Gaps = 15/240 (6%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG--APDTPEIVGRSDSS 59
E +TLT K+ G Y + S T + + E+
Sbjct: 47 ESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQE 106
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAA 118
L D + L + + + + + K +
Sbjct: 107 AVLPCLIT--DPALKDS-VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKT 163
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
+ G S V + E P I+ V + + C +
Sbjct: 164 MVN-GRESTSTGIWLKVNRVHP--EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
Query: 179 YKDDSLIKGRNITYENNVARF------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
K + + + ++ G Y+C A+N+ GT + V
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 72.3 bits (177), Expect = 5e-14
Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 52/263 (19%)
Query: 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ W S + + ST+ + +T TY T + S + L V
Sbjct: 31 SVEWDGPI-----SPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Query: 599 LG--YIIQQQEKN----------------------SLKFTKV-ATLDPSTLQYTVEN--- 630
+ + S+ + Y
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145
Query: 631 -------LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKT 683
+ D + Y + E+T+ + L + P P +
Sbjct: 146 FIIRKAKVLDSNTY--VCKTMVNGR---ESTSTGIWLKVNRVHPEP---PQIKLEPSKLV 197
Query: 684 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI---FDGENIILELKEADSETD 740
+++ + V + L P + + + L L D + D
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ-D 256
Query: 741 AGDYKVVATNELGSATHGARVTV 763
AG Y VA+N++G+ T V
Sbjct: 257 AGIYSCVASNDVGTRTATMNFQV 279
Score = 63.8 bits (155), Expect = 4e-11
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203
APVI+ + V +VTL CV +G ++W S + E+ + T N
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDP--ESPGSTLTTRN 57
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ + G Y C + T+ L V+
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKD 87
Score = 57.3 bits (138), Expect = 6e-09
Identities = 23/205 (11%), Positives = 54/205 (26%), Gaps = 51/205 (24%)
Query: 405 YKDDS--LIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
++ +++ + F + Y CK + S
Sbjct: 125 MREGGRQVLRKTVYFFSPW-RGFIIRKAKVLDSNTYVCKTMVNGREST----------ST 173
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
+ L+ +PP QI+ P
Sbjct: 174 GIWLKVNRVHPEPP---------------------QIKLEPS------------KLVRIR 200
Query: 523 KSQWKVEVKYFGFPRPEISWMKNG---AEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579
++ +K G EI + + ++ +++ +V D Y
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260
Query: 580 TVTATNAAGSTSLDLSLQVL--GYI 602
+ A+N G+ + ++ QV+ +
Sbjct: 261 SCVASNDVGTRTATMNFQVVESHHH 285
Score = 47.6 bits (113), Expect = 8e-06
Identities = 26/189 (13%), Positives = 49/189 (25%), Gaps = 55/189 (29%)
Query: 414 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473
+ E+ + T N + + G Y C +
Sbjct: 42 WTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGS----------------------- 78
Query: 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK-- 531
T +L ++ P NL +Q ++V + +
Sbjct: 79 -------------------TTIHLYVKDPAH-------SWNLLAQEVTVVEGQEAVLPCL 112
Query: 532 -YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA-GS 589
+ +S M+ G K ++ I D++TY S
Sbjct: 113 ITDPALKDSVSLMREGGRQVLRK--TVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRES 170
Query: 590 TSLDLSLQV 598
TS + L+V
Sbjct: 171 TSTGIWLKV 179
Score = 47.6 bits (113), Expect = 8e-06
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP+ E V+ T+ L S + W P + + L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDP-----ESPGSTLT 54
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ A + + G Y+ + + + + V
Sbjct: 55 TRNATFK-NTGTYRCTELEDPMAGSTTIHLYV 85
Score = 44.2 bits (104), Expect = 8e-05
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 5/104 (4%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
A + +E TV E L + + S+ R + I+
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFII 148
Query: 731 ELKEADSETDAGDYKVVATNE-LGSATHGARVTVDVEKVGRPSI 773
D+ Y S + G + V+ P I
Sbjct: 149 ---RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQI 189
Score = 39.9 bits (93), Expect = 0.002
Identities = 27/192 (14%), Positives = 51/192 (26%), Gaps = 46/192 (23%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQ--VKWLKKGKEIK-ESARHIITSRGTQ 360
PA + VT+V +A ++ P ++ V +++G + +
Sbjct: 88 PAHSWNLLAQEVTVVEG-QEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG- 145
Query: 361 RKLVIKRVTQDD-------------ETDIGVLALNVKSVSK--------LKWLDFGSGG- 398
+I++ D E+ + L V V L G
Sbjct: 146 --FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEA 203
Query: 399 ----------------WWFESKYKDDSLIKGR-NITYENNVARFTVVNCSESSEGRYTCK 441
K + + Y V ++ G Y+C
Sbjct: 204 AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263
Query: 442 ATNEAGTAETRT 453
A+N+ GT
Sbjct: 264 ASNDVGTRTATM 275
Score = 36.5 bits (84), Expect = 0.025
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
+ L++ + +D G Y+ SN +G +AT ++ +
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 88.7 bits (220), Expect = 2e-20
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
G V+V P A + + ++ A +T C SG P P I
Sbjct: 76 GRV-EARGEIDFRDIIVIVNVP---PAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 131
Query: 178 WYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
W+++ LI+ + + TV N S G Y C+ATN+AG E L V
Sbjct: 132 WFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 87.5 bits (217), Expect = 5e-20
Identities = 41/233 (17%), Positives = 68/233 (29%), Gaps = 71/233 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P P +SW+ + E+T R +
Sbjct: 28 SSPAPAVSWLYHNEEVTTISDNRFAMLAN------------------------------- 56
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
N+L+ + N D+ Y + EA
Sbjct: 57 ---------------NNLQILNI-------------NKSDEGIY--RCEGRV------EA 80
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
E+ + P A ++ T + + + SP P+I WFRN K +
Sbjct: 81 RGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 139
Query: 714 LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+ + I G N L ++ +D G Y ATN+ G A + V V+
Sbjct: 140 EENE--KYILKGSNTELTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 80.6 bits (199), Expect = 2e-17
Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 52/199 (26%)
Query: 405 YKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
+ + R NN ++N ++S EG Y C+ EA
Sbjct: 37 LYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEGRVEARG------------ 82
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
R + + PP I + +
Sbjct: 83 ----------------------------EIDFRDIIVIVNVPPA---ISMPQ-KSFNATA 110
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYT 580
+ + G P P ISW +NG I +++ + + + + + +++ +D Y
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYV 168
Query: 581 VTATNAAGSTSLDLSLQVL 599
ATN AG LQV
Sbjct: 169 CRATNKAGEDEKQAFLQVF 187
Score = 77.9 bits (192), Expect = 1e-16
Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 51/167 (30%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARF 199
+E + + C VS P P + W + + R NN
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--L 59
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ--------------------------- 232
++N ++S EG Y C+ EA ++V
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 233 ----------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
GK I+E+ ++I+ T+ L ++ + D
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDG 164
Score = 66.7 bits (163), Expect = 9e-13
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
F E + K+ ++ +V +SPAP++ W +N+ + + R N L+
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQ 60
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+ +++D G Y+ E + V V
Sbjct: 61 ILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVN 94
Score = 30.9 bits (70), Expect = 1.1
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
++ + LT+ + D G Y +N G+ +
Sbjct: 147 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 94.3 bits (234), Expect = 3e-20
Identities = 43/261 (16%), Positives = 74/261 (28%), Gaps = 48/261 (18%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE----IVGRSDS 58
E ATLTI D G + +N G A+ TT + ++ P +
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
Query: 59 SVTLHWR-----PPQD-----DGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTT 108
+V L P+ + + + + +T+L
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRT-----FTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 109 KHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV 168
+ N+ A+ V V P I + + L+CV
Sbjct: 385 TEGGTYTFLVSNSDVN--AAIAF-NVYVNTK-----PEILTYDRLV------NGMLQCVA 430
Query: 169 SGVPTPDIKWYK---------------DDSLIKGRNITYENNVARFTVVNCSESSEGRYT 213
+G P P I WY D + + V + ++ + + G
Sbjct: 431 AGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVE 490
Query: 214 CKATNEAGTAETSCTLLVQGK 234
CKA N+ G +G
Sbjct: 491 CKAYNDVGKTSAYFNFAFKGN 511
Score = 89.7 bits (222), Expect = 7e-19
Identities = 38/244 (15%), Positives = 75/244 (30%), Gaps = 20/244 (8%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSV 60
E K E + G YT + + L + V + + G+ D+
Sbjct: 76 ENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDPAKLFLVDRSLYGKEDNDT 132
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS-TTYEVTKLTTKHEYMFRVAAV 119
+ VT Y L+ + + + + + +V
Sbjct: 133 LVRCPLT----DPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV 188
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKW 178
+ G S ++++ P PV+ + T+ C + V + W
Sbjct: 189 DQEGKSVLS--EKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTW 246
Query: 179 YKDDSLIKGRNITYENNVARF--------TVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+++S K + + F T+ + + G + C A N G+A + TL
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLE 306
Query: 231 VQGK 234
V K
Sbjct: 307 VVDK 310
Score = 88.6 bits (219), Expect = 2e-18
Identities = 71/550 (12%), Positives = 129/550 (23%), Gaps = 158/550 (28%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVAR 198
P + P I D + + L C G +KW + + T EN
Sbjct: 31 PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFE-----ILDETNENKQNE 81
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITA------------ 246
+ ++ G+YTC + S + V+ +
Sbjct: 82 WITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL 138
Query: 247 ----------RGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL---ARWTSDLESTA 293
+G Q K + K + + G++ +VK L +
Sbjct: 139 TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198
Query: 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPD--IQVKWLKKGKEIKESAR 351
F + AV +S + L+ + T + + W ++ + K +
Sbjct: 199 KFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK 258
Query: 352 HIITSRGTQRK-----LVIKRVTQDDE------------TDIGVLALNVK---------S 385
+ G L I +D + L V
Sbjct: 259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPM 318
Query: 386 VSKLKWLDFG---------SGG------WWFESKYKDDSLIKGRNITYENNVARFTVV-- 428
++ +++ G W + + Y + +
Sbjct: 319 INTTVFVNDGENVDLIVEYEAFPKPEHQQW----IYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 429 ------NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQ 482
+ G YT +N A
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAI------------------------------- 403
Query: 483 KLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542
N+ + + P+ I D + L + GFP P I W
Sbjct: 404 -----------AFNVYVNTKPE---ILTYDRL-VNGMLQCVA--------AGFPEPTIDW 440
Query: 543 MKNGAEITDSKACRIFIDEET------------STIAIYSVVRADTSTYTVTATNAAGST 590
A + +D +T +I S T A N G T
Sbjct: 441 YFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT 500
Query: 591 SLDLSLQVLG 600
S + G
Sbjct: 501 SAYFNFAFKG 510
Score = 85.1 bits (210), Expect = 2e-17
Identities = 51/458 (11%), Positives = 97/458 (21%), Gaps = 122/458 (26%)
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA---------------ETRTMWPG 457
+ T EN + ++ G+YTC + + +
Sbjct: 70 ILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKED 129
Query: 458 LPLSI----------VVSLRKADTRVKPPMKRVLQKLAVPF------------SYKTRTT 495
+ SL+ + P R +
Sbjct: 130 NDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVD 189
Query: 496 N---------LQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKN 545
++ P A+ +V + S L ++ V +W +
Sbjct: 190 QEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE 249
Query: 546 GAEITDSKACRI-----FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL- 599
++ + F E +T+ I S D+ + A N GS ++ +L+V+
Sbjct: 250 NSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD 309
Query: 600 -GYIIQQQEKNSLKFTKV-------------------------ATLDPSTLQYTVENLRD 633
G+I N+ F T Y
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369
Query: 634 KSEY---------------YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER 678
Y + NS + P +
Sbjct: 370 NIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA-AIAFNVYVNT----------KPEIL-- 416
Query: 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS- 737
T L P P+I W+ D + +
Sbjct: 417 ----TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 738 ----------ETDAGDYKVVATNELGSATHGARVTVDV 765
G + A N++G +
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Score = 75.9 bits (186), Expect = 2e-14
Identities = 53/540 (9%), Positives = 117/540 (21%), Gaps = 150/540 (27%)
Query: 17 DLGDYT----ISLSNALGQASATTKVTLLSAPG-APDTPEIVGRSDSSVTLHWRPPQDDG 71
D+ + L G + + S P P +++ R + L
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCT-----D 60
Query: 72 HSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
V + N E + K + + + + +
Sbjct: 61 PGFVKWT------FEILDETN--ENKQNEWITEKAEATNTGKYTCTNKHGLSN------S 106
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIKGRN 189
YV V+ P + + + + C ++ + L K
Sbjct: 107 IYVFVRDP-----AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161
Query: 190 ITYENNVARFTVVNCSES-SEGRYTCKATNEAGTAETSCTLLVQ---------------- 232
+ + + + C E G + S +++
Sbjct: 162 FIPDPKAG-IMIKSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKA 219
Query: 233 ------------------------------GKEIKESARHIITARGTQRK-----LVIKR 257
+ K ++ G L I
Sbjct: 220 SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISS 279
Query: 258 VTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPS 314
+D GV A N + T + + + +
Sbjct: 280 ARVNDS---GVFMCYANNTFGSA------------NVTTTLEVVDK---GFINIFPMINT 321
Query: 315 VTLVPHLGDATFQVELSS--PDIQVKWLKKGKEIKESARHIITSRGTQR-----KLVIKR 367
V + VE + +W+ + + S +L + R
Sbjct: 322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR 381
Query: 368 VTQDDE------------TDIGVLALNVKSVSKLKWLDFGSGG---------------WW 400
+ + + V + ++ D G W+
Sbjct: 382 LKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWY 441
Query: 401 FESKYK----------DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
F + D + + V + ++ + + G CKA N+ G
Sbjct: 442 FCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTS 501
Score = 73.9 bits (181), Expect = 9e-14
Identities = 57/479 (11%), Positives = 118/479 (24%), Gaps = 165/479 (34%)
Query: 209 EGRYTCK----ATNEAGTAETSCTLLVQGK-EIKESARHIITARGT-------------- 249
+ C + G+++ S + I +I G
Sbjct: 7 AWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKW 66
Query: 250 ------------QRKLVIKRVTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTAW 294
Q + + ++ + G + S + + D
Sbjct: 67 TFEILDETNENKQNEWITEKAEATNT---GKYTCTNKHGLS----NSIYVFVRDPAK--- 116
Query: 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK--GKEIKESARH 352
L + D + L+ P++ LK GK + + R
Sbjct: 117 --------------LFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF 162
Query: 353 IITSRGTQRKLVIKRVTQDDE------------TDIGVLALNVKSVSKLKWLDF------ 394
I + ++IK V + + +K K +
Sbjct: 163 IPDPKAG---IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA 219
Query: 395 ------G---------SGG------WWFESKYKDDSLIKGRNITYENNVARF-------- 425
G W +++S K + + F
Sbjct: 220 SYLLREGEEFTVTCTIKDVSSSVYSTW----KRENSQTKLQEKYNSWHHGDFNYERQATL 275
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLA 485
T+ + + G + C A N G+A
Sbjct: 276 TISSARVNDSGVFMCYANNTFGSAN----------------------------------- 300
Query: 486 VPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMK 544
TT L++ I + + ++ + V+Y FP+PE W+
Sbjct: 301 -------VTTTLEVVDKGF---INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY 350
Query: 545 NGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
TD + E S + + + + TYT +N+ + ++ ++ V
Sbjct: 351 MNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Score = 68.2 bits (166), Expect = 5e-12
Identities = 34/273 (12%), Positives = 64/273 (23%), Gaps = 56/273 (20%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
+ W + T+ + +T YT T + + S+ + ++
Sbjct: 62 GFVKWTFEILDETNENKQ--------NEWITEKAEATNTGKYTCTNKHGLSN-SIYVFVR 112
Query: 598 VLGYIIQQQE---------------------KNSLKFTKVATLDPSTLQYTVEN------ 630
+ N P L++ +
Sbjct: 113 DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 631 ---LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
R + +E L + P+ ++E
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGK---SVLSEKFILKVRPAFKAV---PVVSVSKASYLLREG 226
Query: 688 GTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETDA 741
+ +K + W R N K G+ L + A D+
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DS 285
Query: 742 GDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
G + A N GSA + V V + IN
Sbjct: 286 GVFMCYANNTFGSANVTTTLEV----VDKGFIN 314
Score = 38.5 bits (89), Expect = 0.009
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 18/111 (16%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
P + V+ IRL+ + W + K+
Sbjct: 35 SPPSIHPGKSDLIVRVGDEIRLLCTDP----GFVKWTFEILDETNENKQN--------EW 82
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLN 781
++A T+ G Y + L ++ + V V + + +
Sbjct: 83 ITEKA-EATNTGKYTCTNKHGLSNSIY-----VFVRDPAKLFLVDRSLYGK 127
Score = 31.6 bits (71), Expect = 1.2
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE 51
+I K G N +G+ SA P
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPH 519
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 85.8 bits (213), Expect = 3e-20
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
+S + + PG S +S+T+ W P + Y L +K
Sbjct: 3 SGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTD 61
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++ +S +Y + L EY FRV A N G G ++
Sbjct: 62 K-EQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTP 101
Score = 53.1 bits (128), Expect = 9e-09
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 581 VTATNAAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632
+ A AA TS+ ++ ++ Y + EK + K V S+ YT+ L+
Sbjct: 24 LRAY-AASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDV---SSHSYTINGLK 79
Query: 633 DKSEYYFQVFAENSVGLGP 651
+EY F+V A N G G
Sbjct: 80 KYTEYSFRVVAYNKHGPGV 98
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 92.7 bits (230), Expect = 4e-20
Identities = 41/271 (15%), Positives = 66/271 (24%), Gaps = 33/271 (12%)
Query: 7 TLTIVKFEDKDL------GDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDS 58
L F +D Y N G S V + A +
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGN 119
Query: 59 SVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY-----------EVTKLT 107
S + P DE + Y EV
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWH----TDEEENYFPGAEYDGKYLVLPSGELHIREVGPED 175
Query: 108 TKHEYMFRVAAVNAIG-TGPASHNTRYVVVKAPVDAEAPVIQEPL-KDSVAGFQSSVTLE 165
Y + + + S +V+ P+ + AP + K +++L
Sbjct: 176 GYKSY--QCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 166 CVVSGVPTPDIKWYKDDS-LIKGRNITYENNVARF----TVVNCSESSEGRYTCKATNEA 220
C G P P +WYK + + + + V + + + G+Y C N
Sbjct: 234 CPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 293
Query: 221 GTAETSCTLLVQGK-EIKESARHIITARGTQ 250
G L V K G
Sbjct: 294 GGESVETVLTVTAPLSAKIDPPTQTVDFGRP 324
Score = 89.2 bits (221), Expect = 4e-19
Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 52/253 (20%)
Query: 4 DSATLTI--VKFEDKDLGDYTISLSNALGQA---SATTKVTLLSAPGAPDTPEIVGRS-- 56
S L I V ED Y + L SAT +++ P + P
Sbjct: 162 PSGELHIREVGPED-GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220
Query: 57 ------DSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
+++L W + + V+ + ++++ S
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWY--KFIEGTTRKQAVVLN---------DRVKQVS 269
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
T + + + N++G S T + V AP + F
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGG--ESVETV-LTVTAP-----LSAKIDPPTQTVDF 321
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
C +G P + W KD G+ I + +V R + + +G Y C N
Sbjct: 322 GRPAVFTCQYTGNPIKTVSWMKD-----GKAIGHSESVLRIE--SVKKEDKGMYQCFVRN 374
Query: 219 EAGTAETSCTLLV 231
+ +AE S L +
Sbjct: 375 DRESAEASAELKL 387
Score = 78.4 bits (193), Expect = 2e-15
Identities = 50/277 (18%), Positives = 77/277 (27%), Gaps = 49/277 (17%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS------TYTVTATNAA 587
G P PEI W+++ I + + D Y A N
Sbjct: 30 GNPMPEIIWIRSDGTAVGDVPGLRQISSD-GKLVFPPFRAEDYRQEVHAQVYACLARNQF 88
Query: 588 G---STSLDLSLQVLGYIIQQQEK------NSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
G S + + V Y K NS + + V D+ E Y
Sbjct: 89 GSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 148
Query: 639 FQ--------------------VFAENSVG---------LGPEATTELVALATHATLGSP 669
F V E+ L E T
Sbjct: 149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208
Query: 670 GQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR--EIFDGE 726
AP ++ + TI L+ + PAPS W++ + +
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ L +K+A E D+G Y V N +G + +TV
Sbjct: 269 SGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETVLTV 304
Score = 67.7 bits (165), Expect = 5e-12
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
NSVG G T L A +TV + +P
Sbjct: 289 VNNSVG-GESVETVLTVTA----------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 337
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
++ W ++ K + S + I +K+ D G Y+ N+ SA A +
Sbjct: 338 TVSWMKDGKAIGHS-------ESVLRIESVKKEDK----GMYQCFVRNDRESAEASAELK 386
Query: 763 V 763
+
Sbjct: 387 L 387
Score = 66.9 bits (163), Expect = 8e-12
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 143 EAPVI-QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD----SLIKGRNITYENNVA 197
+ PV +EP + +EC SG P P+I W + D + G +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 198 RFTVVNCS----ESSEGRYTCKATNEAGTAETSCTLLV 231
F E Y C A N+ G+ + +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 99
Score = 65.3 bits (159), Expect = 2e-11
Identities = 68/410 (16%), Positives = 116/410 (28%), Gaps = 85/410 (20%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEI--KESARHIITSRGTQRKLV 364
FL + + + A + + S +P ++ W++ I+S G LV
Sbjct: 6 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LV 62
Query: 365 IKRVTQDD---ETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNI 416
+D E V LA N +S+ + + +E+ + +I+G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY-YEADVNKEHVIRG--- 118
Query: 417 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPP 476
N A C + W + D +
Sbjct: 119 ----NSAVIK-------------CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161
Query: 477 MKRVLQKLAV---------------PFSYKTRTTN----LQIQSPPQQPAIKLVDSNLKS 517
L V + +TR + L I P A + K
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI--FIDEETSTIAIYSVVRAD 575
L V + GFP P W K T +A + + + + T+ I V D
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 281
Query: 576 TSTYTVTATNAAGSTSLDLSLQVLG--YIIQQ------QEKNSLKFT------------- 614
+ Y N+ G S++ L V FT
Sbjct: 282 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Query: 615 ----KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL-VA 659
K S L +E+++ + + +Q F N EA+ EL +
Sbjct: 342 MKDGKAIGHSESVL--RIESVKKEDKGMYQCFVRNDRESA-EASAELKLG 388
Score = 61.1 bits (148), Expect = 6e-10
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 671 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNK-PLLSSPKKREIF-DGEN 727
+ P+F++ + + K +P P I+W R++ + P R+I DG+
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 728 IILELKEADS--ETDAGDYKVVATNELGSA-THGARVTVDV 765
+ + D E A Y +A N+ GS + V V
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 102
Score = 29.9 bits (67), Expect = 3.7
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTL 40
+ + L I + +D G Y + N A A+ ++ L
Sbjct: 348 IGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 90.4 bits (224), Expect = 6e-20
Identities = 34/242 (14%), Positives = 66/242 (27%), Gaps = 15/242 (6%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGA--PDTPEIVGRSDSS 59
+ S+ L+ ++ G Y + SA + + E+V D
Sbjct: 47 DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQD 106
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTST-TYEVTKLTTKHEYMFRVAA 118
L G L M + + + + ++ +A
Sbjct: 107 ALLPCLLT---DPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSA 163
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
+ G S + R V K P + + V + + C S V +
Sbjct: 164 LMG-GRKVMSISIRLKVQKVI--PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 179 YKDDSLIKGRNITYENNVARF------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ ++ + + R+ + G Y+C A+N G TS V
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Query: 233 GK 234
Sbjct: 281 ES 282
Score = 70.8 bits (173), Expect = 2e-13
Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 52/263 (19%)
Query: 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ W S ++ D +S ++ + +T TY T S + L V
Sbjct: 31 SVEWDGP-----PSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Query: 599 L----------------------------GYIIQ------QQEKNSLKFTKVATLDPS-T 623
+++ + L + P
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 624 LQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKT 683
+Y Q A + + + L + P P E
Sbjct: 146 FTIHRAKFIQSQDY--QCSALMGGR---KVMSISIRLKVQKVIPGP---PALTLVPAELV 197
Query: 684 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETD 740
+++ + V+ ++N L+ P++ + + + L L + D +
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ-H 256
Query: 741 AGDYKVVATNELGSATHGARVTV 763
AG+Y VA+N G + V
Sbjct: 257 AGNYSCVASNVQGKHSTSMFFRV 279
Score = 65.0 bits (158), Expect = 2e-11
Identities = 33/279 (11%), Positives = 67/279 (24%), Gaps = 76/279 (27%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNC 204
PVI+ + + V ++VTL CV +G ++W S + + + + + N
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPS--PHWTLYSDGSSSILSTNNA 58
Query: 205 SESSEGRYTCKATNEAGTAETSCTLLVQ-------------------------------- 232
+ + G Y C + + L V+
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 233 ----------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL---ALNVKSVSKL 279
G+ + + + I R AL
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQS---QDYQCSALMGGRKVM- 171
Query: 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGD-ATFQVELSSPD--IQ 336
S + + + + G+ A SS D
Sbjct: 172 -----------SISIRLKVQKVIPGPPALTLVPAELVRI--RGEAAQIVCSASSVDVNFD 218
Query: 337 VKWLKKGKEIKESARHIITSRGTQRK--LVIKRVTQDDE 373
V ++ + + Q+ L + +V
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHA 257
Score = 55.4 bits (133), Expect = 2e-08
Identities = 22/216 (10%), Positives = 51/216 (23%), Gaps = 51/216 (23%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
+ + L++ N ++ FT+ Y C A
Sbjct: 123 SLV--RVRGRPLMRHTNYSFSPW-HGFTIHRAKFIQSQDYQCSALMGGRKV--------- 170
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
+SI + L+ PP + P
Sbjct: 171 -MSISIRLKVQKVIPGPP---------------------ALTLVPA------------EL 196
Query: 519 RLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFID--EETSTIAIYSVVRAD 575
++ ++ N ++ + + ++ T+ + V
Sbjct: 197 VRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQH 256
Query: 576 TSTYTVTATNAAGSTSLDLSLQVL--GYIIQQQEKN 609
Y+ A+N G S + +V+ +
Sbjct: 257 AGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHHH 292
Score = 46.5 bits (110), Expect = 2e-05
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P+ E VK T+ L S + W SP DG + IL
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP-----SPHWTLYSDGSSSILST 55
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
A + + G Y+ + + + V
Sbjct: 56 NNATFQ-NTGTYRCTEPGDPLGGSAAIHLYV 85
Score = 42.6 bits (100), Expect = 3e-04
Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 5/104 (4%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
A + +E V E L + + R L
Sbjct: 89 ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--F 146
Query: 731 ELKEADSETDAGDYKVVATNE-LGSATHGARVTVDVEKVGRPSI 773
+ A + DY+ A + R+ V G P++
Sbjct: 147 TIHRAKFI-QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPAL 189
Score = 38.4 bits (89), Expect = 0.007
Identities = 26/195 (13%), Positives = 45/195 (23%), Gaps = 52/195 (26%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQ--VKWLKK-GKEIKESARHIITSRGTQ 360
PA + V + DA L+ P ++ V ++ G+ + + +
Sbjct: 88 PARPWNVLAQEVVVFED-QDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG- 145
Query: 361 RKLVIKRVTQDDETDIGVL---ALN--VKSVSKLKWLDFG-------------------- 395
I R AL K +S L
Sbjct: 146 --FTIHRAKFI---QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIR 200
Query: 396 ----------SGG------WWFESKYKDDSLIKGR-NITYENNVARFTVVNCSESSEGRY 438
S + + K + + V + G Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260
Query: 439 TCKATNEAGTAETRT 453
+C A+N G T
Sbjct: 261 SCVASNVQGKHSTSM 275
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 85.1 bits (210), Expect = 9e-20
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL 184
G + H+ + P + + SV L C G P P+I+W+ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQG 61
Query: 185 IKGRN----------------ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
+++ + ++ E G Y C+A+N+ +
Sbjct: 62 PNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRA 121
Query: 229 LLVQG 233
V+
Sbjct: 122 PRVKW 126
Score = 61.2 bits (148), Expect = 2e-11
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 14/107 (13%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK---------- 719
F++ + G++ L + SP P I W+ + +
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 720 ---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + E D G Y+ A+N+ V
Sbjct: 79 HIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHLTRAPRV 124
Score = 53.1 bits (127), Expect = 1e-08
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 534 GFPRPEISWMKNGAEITDSKACR-------------IFIDEETSTIAIYSVVRADTSTYT 580
G P PEI W G D + + STI+I ++V DT TY
Sbjct: 47 GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYE 106
Query: 581 VTATNAAGSTSLDLSLQV 598
A+N L + +V
Sbjct: 107 CRASNDPDRNHLTRAPRV 124
Score = 36.9 bits (85), Expect = 0.007
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 390 KWLDFGSGGWWFESKYKDDSLIKGRNI---TYENNVARFTVVNCSESSEGRYTCKATNEA 446
+W G G S+ D + + +I +++ + ++ E G Y C+A+N+
Sbjct: 54 QWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDP 113
Query: 447 GTAETRT 453
Sbjct: 114 DRNHLTR 120
Score = 31.1 bits (70), Expect = 0.56
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
++T++I ++D G Y SN + T
Sbjct: 88 AASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 30.8 bits (69), Expect = 0.90
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 15/81 (18%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRK--- 362
F+ S G E SP +++W +G+ + + R
Sbjct: 23 GFVQAPLSQQRWVG-GSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH 81
Query: 363 ----------LVIKRVTQDDE 373
+ I + ++D
Sbjct: 82 ATYHQHAASTISIDTLVEEDT 102
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 84.3 bits (209), Expect = 1e-19
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
+S +V T PG P + S++S+ L W PP+ D + Y L D +
Sbjct: 3 SGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHG 59
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
T+Y + L Y FR+AA + G G ++
Sbjct: 60 EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 100
Score = 50.8 bits (122), Expect = 6e-08
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 586 AAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
TS+ LS + Y + ++ + ++ Y ++ L+ S YYF
Sbjct: 28 PESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITI--EPGTSYRLQGLKPNSLYYF 85
Query: 640 QVFAENSVGLGP 651
++ A + GLG
Sbjct: 86 RLAARSPQGLGA 97
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 86.4 bits (214), Expect = 1e-19
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 144 APVIQEPLK--DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-GRNITYENNVARFT 200
P I P K ++ A +T C SG P P I W+++ LI+ + + T
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
V N S G Y C+ATN+AG E L V +
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
Score = 79.1 bits (195), Expect = 5e-17
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA-GFQSSVTLECVVSGVPTPDI 176
A N G + V P I + ++ VTL C G P P+I
Sbjct: 77 ATNKAGE--DEKQAF-LQVFVQ-----PHIIQLKNETTYEN--GQVTLVCDAEGEPIPEI 126
Query: 177 KWYKD---------DSLIKGR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
W + D + GR + ++ + + + S GRY C+A + G + S
Sbjct: 127 TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS 186
Query: 227 CTLLVQ 232
L ++
Sbjct: 187 MYLDIE 192
Score = 76.4 bits (188), Expect = 4e-16
Identities = 38/238 (15%), Positives = 59/238 (24%), Gaps = 82/238 (34%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW +NG I + Y + +N
Sbjct: 30 GSPEPAISWFRNGKLIE------------------------ENEKYILKGSN-------- 57
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
L + D Y A N G E
Sbjct: 58 ---------------TELTVRNI-------------INSDGGPY--VCRATNKAG-EDEK 86
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
L P I+ E T E G + L+ + P P I W R
Sbjct: 87 QAFLQVFV----------QPHIIQLKNE-TTYENGQVTLVCDAEGEPIPEITWKRAVDGF 135
Query: 714 LSSPKKREI-------FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
+ + + + L +K+ D+G Y A + +G + ++
Sbjct: 136 TFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS-DSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 70.2 bits (172), Expect = 5e-14
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 672 APLFI--ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
P ++ T + + + SP P+I WFRN K + + + I G N
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTE 59
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
L ++ +D G Y ATN+ G A + V V +P I
Sbjct: 60 LTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQVFV----QPHI 98
Score = 68.7 bits (168), Expect = 2e-13
Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 61/204 (29%)
Query: 405 YKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463
+++ LI+ + + TV N S G Y C+ATN+AG E
Sbjct: 39 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK------------ 86
Query: 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ--QPAIKLVDSNLKSQRLS 521
LQ+ P Q K++
Sbjct: 87 ------------------------------QAFLQVFVQPHIIQL---------KNETTY 107
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR-------IFIDEETSTIAIYSVVRA 574
Q + G P PEI+W + T ++ + + +S++ I V +
Sbjct: 108 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 575 DTSTYTVTATNAAGSTSLDLSLQV 598
D+ Y A + G + L +
Sbjct: 168 DSGRYDCEAASRIGGHQKSMYLDI 191
Score = 50.2 bits (120), Expect = 4e-07
Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 49/193 (25%)
Query: 302 STPAVEFLSKLPSVTLVPHLGD-ATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGT 359
S PA+ K + T G+ TF S SP+ + W + GK I+E+ ++I+ T
Sbjct: 1 SMPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 360 QRKLVIKRVTQDDE------------TDIGVLALNVK-----------------SVS--- 387
+ L ++ + D D L V V+
Sbjct: 59 E--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVC 116
Query: 388 --------KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYT 439
++ W G + E D I + ++ + + + S GRY
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI---EVKGQHGSSSLHIKDVKLSDSGRYD 173
Query: 440 CKATNEAGTAETR 452
C+A + G +
Sbjct: 174 CEAASRIGGHQKS 186
Score = 40.2 bits (94), Expect = 0.001
Identities = 11/63 (17%), Positives = 21/63 (33%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++ + LT+ + D G Y +N G+ + + P + V
Sbjct: 53 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQV 112
Query: 61 TLH 63
TL
Sbjct: 113 TLV 115
Score = 30.9 bits (70), Expect = 1.0
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ S++L I + D G Y ++ +G + +
Sbjct: 153 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 92.5 bits (229), Expect = 2e-19
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 7/147 (4%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
A+ +V +D G Y + G S ++ + P P++ + +
Sbjct: 220 RFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLW 279
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVN 120
+ +G P+ +E WN + ST+Y++ L EY V
Sbjct: 280 IQLNANSINGDGPIVAREVEYCTASG--SWNDRQPVDSTSYKIGHLDPDTEYEISVLLTR 337
Query: 121 A--IGTGPASHNTRYVVVKAPVDAEAP 145
GTG K P
Sbjct: 338 PGEGGTGSPG-PALRTRTKCADPMRGP 363
Score = 65.6 bits (159), Expect = 4e-11
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 7/129 (5%)
Query: 33 SATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLE------SHDK 85
+ T+ P E+V +T+ W P + + ++
Sbjct: 349 ALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQ 408
Query: 86 DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
V E + + +T L+ ++ +N G + P
Sbjct: 409 VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTE 468
Query: 146 VIQEPLKDS 154
IQ +
Sbjct: 469 SIQGSTFEE 477
Score = 64.0 bits (155), Expect = 1e-10
Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLE------- 81
++ T PGA T I G + + L WR P +T Y +
Sbjct: 448 KESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTY-GVITLYEITYKAVSSF 506
Query: 82 --SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
D T + L Y F + A A G GP +
Sbjct: 507 DPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA 555
Score = 57.9 bits (139), Expect = 1e-08
Identities = 22/217 (10%), Positives = 51/217 (23%), Gaps = 46/217 (21%)
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC 555
+++ P + + ++ G G ++ D+
Sbjct: 154 EVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLK 211
Query: 556 RIFIDEETSTIA---IYSVVRADTSTYTVTATNAAG------------------------ 588
I + IA + + + D Y G
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA 271
Query: 589 ---STSLDLSLQ---------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
+T L + L ++ ++ + + + Y + +L +E
Sbjct: 272 SVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQ---PVDSTSYKIGHLDPDTE 328
Query: 637 YYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
Y V G + + T P + P
Sbjct: 329 YEISVLLTRPGEGGTGSPGPALRTRTKCA--DPMRGP 363
Score = 57.1 bits (137), Expect = 2e-08
Identities = 24/173 (13%), Positives = 42/173 (24%), Gaps = 47/173 (27%)
Query: 30 GQASATTKVTLLSAPGAP--DTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE 87
G + T +SAP P + + ++D++VT+ +P +PV+ Y + ++
Sbjct: 552 GPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHS-RGAPVSVYQIVVEEERP 610
Query: 88 FMVWNKIET-------------------------------------------TSTTYEVT 104
E T Y T
Sbjct: 611 RRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNT 670
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
L Y A + + V K + E D
Sbjct: 671 PLLPYKSYRIYFQAASRANGETKIDCVQ-VATKGAATPKPVPEPEKQTDHTVK 722
Score = 50.5 bits (120), Expect = 2e-06
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 13/153 (8%)
Query: 90 VWNKIETTSTTYEVTKLT----TKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+WN + T+ +L + Y + + G + + V V P
Sbjct: 109 IWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAID--EVKVLGHPCTRTP 166
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK------DDSLIKGRNITYENNVARF 199
V T +C G + + D L + + + +A F
Sbjct: 167 HFLRIQNVEVNA-GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASF 225
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
VVN ++ G+Y C E G ++ LV
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Score = 47.5 bits (112), Expect = 1e-05
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 597 QVLGYIIQQQEKNSL-------KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649
+ Y I + +S + + + + L + Y F + A + G
Sbjct: 492 VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGF 551
Query: 650 GPEATTE 656
GP AT +
Sbjct: 552 GPPATNQ 558
Score = 43.6 bits (102), Expect = 3e-04
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 7/79 (8%)
Query: 599 LGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658
+ Y Q + ++ + S Q+T+ NL + ++ N G
Sbjct: 397 VHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQEL--- 453
Query: 659 ALATHATL-GSPGQAPLFI 676
T PG P
Sbjct: 454 ---IVQTDEDLPGAVPTES 469
Score = 42.8 bits (100), Expect = 4e-04
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 10/134 (7%)
Query: 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691
+ + F+V G +A+ LG P R + V
Sbjct: 132 PNFYQVIFEVITSGHQGY--------LAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFAT 183
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSP-KKREIFDGENIILELKEAD-SETDAGDYKVVAT 749
+ + +P K+ ++ I + ++ DAG Y+ +
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Query: 750 NELGSATHGARVTV 763
E G V
Sbjct: 244 TEGGVGISNYAELV 257
Score = 37.8 bits (87), Expect = 0.015
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 29/151 (19%)
Query: 332 SPDIQVKWLKKGKEIKESAR---HIITSRGTQRKLVIKRVTQDDETDIGVLALN------ 382
P W G + R I T +++ + +T + + + +
Sbjct: 103 GPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPC 162
Query: 383 -------------VKSVSKLKWLDFGSGG-------WWFESKYKDDSLIKGRNITYENNV 422
V + + G W +D L + + + +
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 222
Query: 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
A F VVN ++ G+Y C E G +
Sbjct: 223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNY 253
Score = 36.7 bits (84), Expect = 0.030
Identities = 17/162 (10%), Positives = 30/162 (18%), Gaps = 31/162 (19%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFI---DEETSTIAIYSVVRADTSTYTVTAT 584
V VK P W +G + I + + +
Sbjct: 96 VYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEV 155
Query: 585 NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPS---------------------- 622
G + ++ F A
Sbjct: 156 KVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV 215
Query: 623 ------TLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658
+ V N + ++ G+G ELV
Sbjct: 216 TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257
Score = 29.4 bits (65), Expect = 5.7
Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 29/200 (14%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
P + TT + S P ++ + + K G
Sbjct: 553 PPATNQFTTKISAPSMPAYELETPLNQTDNTVTVM----LK-------------PAHSRG 595
Query: 547 AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQ 606
A ++ +I ++EE + + N ++ L+
Sbjct: 596 APVS---VYQIVVEEERPRRTKKTTEILKCYPVPIHFQN---ASLLNSQYYFAAEFPADS 649
Query: 607 EKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL 666
+ + FT + + Y L Y A + + VA
Sbjct: 650 LQAAQPFT--IGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVA----TKG 703
Query: 667 GSPGQAPLFIERFEEKTVKE 686
+ + E+ + TVK
Sbjct: 704 AATPKPVPEPEKQTDHTVKG 723
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 86.1 bits (213), Expect = 3e-19
Identities = 41/278 (14%), Positives = 71/278 (25%), Gaps = 81/278 (29%)
Query: 489 SYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548
+ ++ + + + N +S+ + K+ + G P + W K E
Sbjct: 5 HHHHHHSSGLVPRGSK------ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE 58
Query: 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEK 608
I + TS + +V D Y N
Sbjct: 59 IPNG---------NTSELIFNAVHVKDAGFYVCRVNNNFTF------------------- 90
Query: 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668
+F++ + L V PE+ V G
Sbjct: 91 ---EFSQWSQL--------------------------DVCDIPESFQRSVD-------GV 114
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
+ + T+ L SP P WF+N PL KK
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------- 165
Query: 729 ILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765
+ + D E G Y N+ S + + +D
Sbjct: 166 LYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDE 202
Score = 81.9 bits (202), Expect = 1e-17
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 16/147 (10%)
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE---------AP 145
++ + K + N S ++ V P +
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTF-EFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCS 205
I S++ L+CV G P P +W+K+ +T+E + V
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN-----ELPLTHETK-KLYMVPYVD 173
Query: 206 ESSEGRYTCKATNEAGTAETSCTLLVQ 232
+G Y C N+ + ++ ++
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIII 200
Score = 81.5 bits (201), Expect = 1e-17
Identities = 28/250 (11%), Positives = 57/250 (22%), Gaps = 75/250 (30%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL 184
G + H+ + P I + V L C +G P +W+K +
Sbjct: 2 GSSHHHHHHSSGLVP---RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE 58
Query: 185 IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHII 244
I N + G Y C+ N E + ++
Sbjct: 59 IP------NGNTSELIFNAVHVKDAGFYVCRVNNNF------------TFEFSQWSQ--- 97
Query: 245 TARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTP 304
L+V + F +
Sbjct: 98 --------------------------LDV---------------CDIPESFQRSVDGVSE 116
Query: 305 AVEFLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
+ + P+ + Q + SP +W K + + +
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL---------Y 167
Query: 364 VIKRVTQDDE 373
++ V + +
Sbjct: 168 MVPYVDLEHQ 177
Score = 69.9 bits (171), Expect = 1e-13
Identities = 29/203 (14%), Positives = 50/203 (24%), Gaps = 50/203 (24%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+K + I N + G Y C+ N ++
Sbjct: 53 FKMNKEIP------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQW----------- 95
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+ V + + + + LQI P SQ+L S
Sbjct: 96 ----SQLDVCDIPESFQRSVD-----GVSESKLQICVEPT------------SQKLMPGS 134
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
++ G P P W KN +T + V TY
Sbjct: 135 TLVLQCVAVGSPIPHYQWFKNELPLTHE---------TKKLYMVPYVDLEHQGTYWCHVY 185
Query: 585 NAAG---STSLDLSLQVLGYIIQ 604
N S +++ + L +
Sbjct: 186 NDRDSQDSKKVEIIIDELNNLGH 208
Score = 33.7 bits (77), Expect = 0.16
Identities = 21/171 (12%), Positives = 43/171 (25%), Gaps = 33/171 (19%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPEIVGRSDSSV 60
+++ L KD G Y ++N S +++ + P +
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 61 TLHWRPPQD----DGHS-----PVTGY----VLESHDKDEFMVWNK-----IETTSTTYE 102
P G + G W K T Y
Sbjct: 121 IC--VEPTSQKLMPGSTLVLQCVAVGSPIPHY----------QWFKNELPLTHETKKLYM 168
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKD 153
V + +H+ + N + + +++ + P +E D
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVE--IIIDELNNLGHPDNKEQTTD 217
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 83.0 bits (205), Expect = 5e-19
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 32 ASATTKVTLLSAPGAPD-TPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--------- 81
S+ + L+AP P E+ S ++T+HW ++ Y L+
Sbjct: 4 GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60
Query: 82 -SHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ W + Y V L + Y+F V A+N G+ +
Sbjct: 61 FISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE 109
Score = 37.2 bits (86), Expect = 0.004
Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 10/69 (14%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPS---------TLQYTVENLRDKSEYYFQVFAENSVG 648
+ Y +Q YTV L+ + Y F V A N G
Sbjct: 45 ISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG 104
Query: 649 LG-PEATTE 656
E T
Sbjct: 105 SRNSEPTRL 113
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 90.2 bits (223), Expect = 5e-19
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 20 DYTISLS--NALGQASATTKV---TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSP 74
+YT ++ N + + ++ P + GRS +S+++ W P S
Sbjct: 412 NYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQ-SR 470
Query: 75 VTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V Y + K + +N T + + L Y+ +V A+ G G S
Sbjct: 471 VWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGS 524
Score = 83.7 bits (206), Expect = 7e-17
Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 18/160 (11%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
G + +A + P + + V L W PPQD G
Sbjct: 306 PEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDI 365
Query: 77 GYVLE----------SHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNAIGT 124
Y + + + +++ T T+ V+ L Y F V A N +
Sbjct: 366 VYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSG 425
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTL 164
S R + + + L+ +S+++
Sbjct: 426 LVTS---RSFRTASVSINQTEPPKVRLEGR---STTSLSV 459
Score = 47.9 bits (113), Expect = 1e-05
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 585 NAAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
+TSL +S V Y + ++K V T+++L +
Sbjct: 450 EGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNV--RRTEGFSVTLDDLAPDTT 507
Query: 637 YYFQVFAENSVGLGP 651
Y QV A G G
Sbjct: 508 YLVQVQALTQEGQGA 522
Score = 39.0 bits (90), Expect = 0.006
Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 19/89 (21%)
Query: 589 STSLDLS---------LQVLGYIIQQQEKNSLKFTKVATLDP----------STLQYTVE 629
++L + + Y + ++ + TV
Sbjct: 346 GAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVS 405
Query: 630 NLRDKSEYYFQVFAENSVGLGPEATTELV 658
+L Y F V A N V + +
Sbjct: 406 DLEPHMNYTFTVEARNGVSGLVTSRSFRT 434
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 82.0 bits (203), Expect = 5e-19
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYEN 194
+ + QE LKD + TL CV+S V P +KW +++++ + ++ E
Sbjct: 2 SSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEG 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
+ V N GRY+C G TS TL V
Sbjct: 61 AMLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSG 99
Score = 70.4 bits (173), Expect = 6e-15
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S S+ V F L + V G AT + LSS VKW ++ ++ + G
Sbjct: 3 SGSSGPVRFQEALKDLE-VLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGA 61
Query: 360 QRKLVIKRVTQDDE 373
+LV++ + D
Sbjct: 62 MLELVVRNLRPQDS 75
Score = 70.0 bits (172), Expect = 8e-15
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G + F E ++ V E G L + + AP + W N L K +
Sbjct: 1 GSSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSAT 756
G + L ++ + D+G Y ++ SAT
Sbjct: 60 GAMLELVVRNLRPQ-DSGRYSCSFGDQTTSAT 90
Score = 49.2 bits (118), Expect = 1e-07
Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
LK + + P + W + + + + + ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 575 DTSTYTVTATNAAGSTSL 592
D+ Y+ + + S +L
Sbjct: 74 DSGRYSCSFGDQTTSATL 91
Score = 37.7 bits (88), Expect = 0.002
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+++++ + ++ E + V N GRY+C ++ +A
Sbjct: 42 CYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSAT 90
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 85.0 bits (210), Expect = 6e-19
Identities = 39/225 (17%), Positives = 69/225 (30%), Gaps = 39/225 (17%)
Query: 34 ATTKVTLLSAPGAPDTPEIVGRSDSSVTLH------------WRPPQDDGHSPVTGYVLE 81
A VT+ S+ PE+ ++ V L W+ D G +
Sbjct: 1 AMGSVTVHSSE-----PEVRIPENNPVKLSCAYSGFSSPRVEWK--FDQGDTTRLVCYNN 53
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+++ T +T + + G + ++V P
Sbjct: 54 KITASY---EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK-LIVLVP-- 107
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIK--GRNITYENNVAR 198
P S A + L C G P + W+KD ++ ++ +N +
Sbjct: 108 ---PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 199 F--------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
S S G Y+C+A N GT TS + ++ E
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
Score = 72.7 bits (178), Expect = 1e-14
Identities = 36/247 (14%), Positives = 61/247 (24%), Gaps = 70/247 (28%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
K+ Y GF P + W + + T + N
Sbjct: 23 KLSCAYSGFSSPRVEWKFDQGDTT-----------------------------RLVCYNN 53
Query: 587 AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646
+ S + + L + F V D Y
Sbjct: 54 KITASYEDRVTFLP--------TGITFKSV-------------TREDTGTY--TCMVSEE 90
Query: 647 VGLGP-EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSI 704
G E +L+ L P + L SP
Sbjct: 91 GGNSYGEVKVKLIVLV----------PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY 140
Query: 705 VWFRNNKPLLSSPKKREIFDGENIILELKEAD------SETDAGDYKVVATNELGSATHG 758
WF++ + ++PK F + +L + S +D G+Y A N G+
Sbjct: 141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS 200
Query: 759 ARVTVDV 765
V ++
Sbjct: 201 NAVRMEA 207
Score = 59.2 bits (143), Expect = 5e-10
Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 54/181 (29%)
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLA 485
T + + G YTC + E G +
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNS------------------------------------ 94
Query: 486 VPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVE-VKYFGFPRPEISWMK 544
Y L + PP +P + ++ ++ + + G P E +W K
Sbjct: 95 ----YGEVKVKLIVLVPPSKP------TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK 144
Query: 545 NGAEITDS-------KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
+G + + ++ T + + +DT Y+ A N G+ +++
Sbjct: 145 DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Query: 598 V 598
+
Sbjct: 205 M 205
Score = 53.4 bits (128), Expect = 4e-08
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG------ 725
+ E + E ++L +P + W +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 726 --ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLN 781
+ K + D G Y + + E G++ +V + V PS +++I +
Sbjct: 64 TFLPTGITFKSV-TREDTGTYTCMVSEEGGNSYGEVKVKLIVL--VPPSKPTVNIPSS 118
Score = 36.5 bits (84), Expect = 0.018
Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 61/205 (29%)
Query: 302 STPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQ 360
+ +V S P V +P S +V+W + + +
Sbjct: 1 AMGSVTVHSSEPEVR-IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASY 59
Query: 361 RK--------LVIKRVTQDDE--------------TDIGVLALNVKS----VSKLKWLDF 394
+ K VT++D + L V +
Sbjct: 60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSA 119
Query: 395 GSGG------------------WWFESKYKDDSLIK--GRNITYENNVARF--------T 426
G W +KD ++ ++ +N +
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTW-----FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 174
Query: 427 VVNCSESSEGRYTCKATNEAGTAET 451
S S G Y+C+A N GT T
Sbjct: 175 FDPLSASDTGEYSCEARNGYGTPMT 199
Score = 31.9 bits (72), Expect = 0.54
Identities = 30/150 (20%), Positives = 45/150 (30%), Gaps = 17/150 (11%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTL--LSAPGAPDTPE-IVGRSD 57
+ +T +D G YT +S G + KV L L P P
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 58 SSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNK---IETTSTTYEVTKLTT 108
+ L DG P G V+ ++ K N + T+ L+
Sbjct: 123 NRAVLTCSEQ--DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 109 KHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+ A N GT S V ++A
Sbjct: 181 SDTGEYSCEARNGYGTPMTS---NAVRMEA 207
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 87.0 bits (215), Expect = 1e-18
Identities = 42/284 (14%), Positives = 76/284 (26%), Gaps = 59/284 (20%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
PR ++W KN + T + + + + ++ D+ TY T NA+ +
Sbjct: 51 VSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS 110
Query: 594 LSLQVL----GYIIQQQEKNSLKFTKVATLDPSTLQYTV--------------ENLRDKS 635
+ L+V ++ L + L L L +
Sbjct: 111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN 170
Query: 636 EYYFQV---------------------FAENSVGLGPEATTELVALATHATLGSPGQAPL 674
E + V + T + L P+
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE--TIPV 228
Query: 675 FIERFEEKTVKEKGTIRLMAKVKA---SPAPSIVWFRNNKPLLSSPKKREIF-------- 723
I + + + + KV +P +++W+ N + S
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 724 --DGENI---ILELKEADSETDAG-DYKVVATNELGSATHGARV 761
+ EN L E D D+K V N L T V
Sbjct: 289 SENNENYIEVPLIFDPVTRE-DLHMDFKCVVHNTLSFQTLRTTV 331
Score = 76.6 bits (188), Expect = 4e-15
Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 37/261 (14%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGA----PDTPEIVGR- 55
M L ++ +D G Y + NA + ++ + A P+I+
Sbjct: 76 MWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLS 135
Query: 56 SDSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK 109
+ + + V +L+ ++ V +T V + +
Sbjct: 136 TSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG-----TTHLLVHDVALE 190
Query: 110 HEYMFRVAAVNAIGTGPAS-HNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV 168
+R A + + + +K + PVI PLK A S +T+ C V
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV 250
Query: 169 ---SGVPTPDIKWYKDDSLI------------KGRNITYENNVARFTVV----NCSESSE 209
+G P + W+ + R ENN V +
Sbjct: 251 FLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDL 310
Query: 210 GR-YTCKATNEAGTAETSCTL 229
+ C N T+
Sbjct: 311 HMDFKCVVHNTLSFQTLRTTV 331
Score = 72.0 bits (176), Expect = 1e-13
Identities = 24/122 (19%), Positives = 35/122 (28%), Gaps = 13/122 (10%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECV-----VSGVP 172
NA S + V DA P I P + +S L C
Sbjct: 100 TRNASYCDKMSIE---LRVFENTDAFLPFISYP---QILTLSTSGVLVCPDLSEFTRDKT 153
Query: 173 TPDIKWYKDDSLI--KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
I+WYKD L+ V + + G Y C T + + T
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213
Query: 231 VQ 232
++
Sbjct: 214 IE 215
Score = 68.2 bits (166), Expect = 2e-12
Identities = 39/322 (12%), Positives = 77/322 (23%), Gaps = 95/322 (29%)
Query: 131 TRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-------VVSGVPTPDIKWYKDDS 183
T K V L C S P ++ W+K+DS
Sbjct: 5 TLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64
Query: 184 LI-----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ------ 232
+ + ++ + G Y C N + + S L V
Sbjct: 65 ARTVPGEEETRMWAQDGALWLL--PALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF 122
Query: 233 ----------------------------------------GKEIKESARHIITARGTQRK 252
+ + ++ RGT
Sbjct: 123 LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-H 181
Query: 253 LVIKRVTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFL 309
L++ V +D G + + ++ + +L + K +
Sbjct: 182 LLVHDVALEDA---GYYRCVLTF--AHEGQQYNITRSIELRIK------KKKEETIPVII 230
Query: 310 SKLPSVTLVPHLGD-ATFQ----VELSSPDIQVKWLKKGKE----------IKESARHII 354
S L +++ G T + +P + W + E R
Sbjct: 231 SPLKTISASL--GSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 355 TSRG---TQRKLVIKRVTQDDE 373
+ + L+ VT++D
Sbjct: 289 SENNENYIEVPLIFDPVTREDL 310
Score = 68.2 bits (166), Expect = 2e-12
Identities = 44/318 (13%), Positives = 71/318 (22%), Gaps = 87/318 (27%)
Query: 332 SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDIGVL 379
SP I + W K L + Q+D D +
Sbjct: 52 SPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSI 111
Query: 380 ALNVKS--------VSKLKWLDFGSGGWWFESK---------------YKDDSLI--KGR 414
L V +S + L + G YKD L+
Sbjct: 112 ELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE 171
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVK 474
V + + G Y C T + + SI + ++K
Sbjct: 172 KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYN-----ITRSIELRIKKKKEETI 226
Query: 475 PPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534
P I SP + + L S L + K G
Sbjct: 227 P----------------------VIISPLKTISASL-GSRL---TIPCKVFLG-----TG 255
Query: 535 FPRPEISWMKNGAEITDSKACRIFIDEE-------------TSTIAIYSVVRADTST-YT 580
P + W +S + E + V R D +
Sbjct: 256 TPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFK 315
Query: 581 VTATNAAGSTSLDLSLQV 598
N +L +++
Sbjct: 316 CVVHNTLSFQTLRTTVKE 333
Score = 61.2 bits (148), Expect = 4e-10
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 8/121 (6%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRL-------MAKVKASPAPSIVWFRNNKPLLSSPKK 719
G+ ++ + E + L SP ++ W +N+ ++
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72
Query: 720 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDID 779
++ L L A E D+G Y N + V S
Sbjct: 73 ETRMWAQDGALWLLPALQE-DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQI 131
Query: 780 L 780
L
Sbjct: 132 L 132
Score = 37.7 bits (87), Expect = 0.011
Identities = 23/180 (12%), Positives = 45/180 (25%), Gaps = 58/180 (32%)
Query: 331 SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD------------ETDIGV 378
D++++W K + + ++ RGT L++ V +D E
Sbjct: 151 DKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-HLLVHDVALEDAGYYRCVLTFAHEGQQYN 209
Query: 379 LALNVKSVSKLKWLD---------------------------FGSGG------WWFESKY 405
+ +++ K K + G+G WW +
Sbjct: 210 ITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269
Query: 406 KDDSLIKGRNITYENN-----------VARFTVVNCSESSEGR-YTCKATNEAGTAETRT 453
+S G +T + + C N RT
Sbjct: 270 HIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329
Score = 31.6 bits (71), Expect = 0.94
Identities = 21/170 (12%), Positives = 41/170 (24%), Gaps = 35/170 (20%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQ----ASATTKVTLLSAPGAPDTPEIVGRSD 57
+ L + +D G Y L+ A + + ++ + P I+
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIK-KKKEETIPVIISPLK 234
Query: 58 -------SSVTLH----------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKI 94
S +T+ W S G + + E+ N+
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNEN 294
Query: 95 ETTSTTYEVTKLTTKHE-YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE 143
+T + F+ N + T VK
Sbjct: 295 YIEVPLI-FDPVTREDLHMDFKCVVHNTLSF-----QTLRTTVKEHHHHH 338
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 80.8 bits (200), Expect = 1e-18
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVAR 198
+ A E L + + + C P + W K ++ + E R
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
T+ ++ YTC + G A++ LLVQG+
Sbjct: 65 LTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRSG 99
Score = 75.4 bits (186), Expect = 1e-16
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRG 358
S S+ A F +L ++ + G A F + P V W K E++ S +H + G
Sbjct: 2 SSGSSGANCFTEELTNLQVEEK-GTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEG 60
Query: 359 TQRKLVIKRVTQDDE 373
+L I + + D
Sbjct: 61 LTLRLTISALEKADS 75
Score = 73.5 bits (181), Expect = 4e-16
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 667 GSPG--QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G A F E V+EKGT K PA ++ W + L +S K + +
Sbjct: 1 GSSGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 769
G + L + + D+ Y G A A++ V + G
Sbjct: 60 GLTLRLTISALEKA-DSDTYTCDI----GQAQSRAQLLVQGRRSG 99
Score = 54.3 bits (131), Expect = 3e-09
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P ++W K E+ S + + T + I ++ +AD+ TYT A L
Sbjct: 35 PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQL 91
Score = 35.0 bits (81), Expect = 0.013
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
K ++ + E R T+ ++ YTC A+
Sbjct: 42 RKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ 90
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 80.8 bits (200), Expect = 1e-18
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
S PG + + V S +S+ + W PP PV GY L + IE +Y
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYAN-GPVQGYRLFCTEVSTGK-EQNIEVDGLSY 63
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++ L EY R A N G G ++
Sbjct: 64 KLEGLKKFTEYSLRFLAYNRYGPGVSTD 91
Score = 51.1 bits (123), Expect = 4e-08
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 581 VTATNAAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632
+ A + TS+ ++ V GY + E ++ K + + L Y +E L+
Sbjct: 14 LQAV-STSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNI---EVDGLSYKLEGLK 69
Query: 633 DKSEYYFQVFAENSVGLGP 651
+EY + A N G G
Sbjct: 70 KFTEYSLRFLAYNRYGPGV 88
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 85.0 bits (210), Expect = 1e-18
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 138 APVDAEAPVIQEPL----KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RN 189
VD AP P K ++V C +G PTP I W K+ +G
Sbjct: 5 TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64
Query: 190 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
I + + + S G YTC N+ G+ + TL V +
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 110
Score = 82.7 bits (204), Expect = 7e-18
Identities = 44/252 (17%), Positives = 63/252 (25%), Gaps = 78/252 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW+KNG E
Sbjct: 41 GNPTPSISWLKNGREFRGEHRIGGIKLRH------------------------------- 69
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
++ SL V D+ Y EN G
Sbjct: 70 -------------QQWSLVMESV-------------VPSDRGNY--TCVVENKFGSI-RQ 100
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
T L L SP + L +T + KV + P I W ++ +
Sbjct: 101 TYTLDVLER-----SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 155
Query: 714 LSSPKK------------REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
S ++ L L SE D G+Y ATN +G A +
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SERDGGEYLCRATNFIGVAEKAFWL 214
Query: 762 TVDVEKVGRPSI 773
+V + +
Sbjct: 215 SVHGPRAAEEEL 226
Score = 79.2 bits (195), Expect = 1e-16
Identities = 30/136 (22%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
N G+ + V + + A S V C V P I+
Sbjct: 91 VENKFGS--IRQTYT-LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 147
Query: 178 WYKDD---------------SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
W K +++K R + N SE G Y C+ATN G
Sbjct: 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV 207
Query: 223 AETSCTLLVQGKEIKE 238
AE + L V G E
Sbjct: 208 AEKAFWLSVHGPRAAE 223
Score = 67.3 bits (164), Expect = 1e-12
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 664 ATLGSPGQAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK- 718
G AP + ER ++K V T+R +P PSI W +N + +
Sbjct: 3 PDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 62
Query: 719 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ L ++ D G+Y V N+ GS + V RP +
Sbjct: 63 GGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 116
Score = 63.8 bits (155), Expect = 2e-11
Identities = 33/212 (15%), Positives = 53/212 (25%), Gaps = 59/212 (27%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
K+ +G I + + + S G YTC N+ G+
Sbjct: 50 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ--------- 100
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T L + I +Q
Sbjct: 101 ---------------------------------TYTLDVLERSPHRPILQAGL-PANQTA 126
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKNGAE------------ITDSKACRIFIDEETSTIAI 568
+ S + K + +P I W+K+ +T K+ E + +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V D Y ATN G L V G
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 44.2 bits (104), Expect = 7e-05
Identities = 39/189 (20%), Positives = 58/189 (30%), Gaps = 50/189 (26%)
Query: 313 PSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQ 370
+ VP F+ + +P + WLK G+E + R I R Q LV++ V
Sbjct: 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 81
Query: 371 DD--------ETDIGVL----ALNVKSVS------------------------------- 387
D E G + L+V S
Sbjct: 82 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD 141
Query: 388 ---KLKWL--DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 442
++WL +G +++K R + N SE G Y C+A
Sbjct: 142 AQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA 201
Query: 443 TNEAGTAET 451
TN G AE
Sbjct: 202 TNFIGVAEK 210
Score = 38.4 bits (89), Expect = 0.006
Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 41/192 (21%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSD--- 57
+ +L + D G+YT + N G T + +L + ++
Sbjct: 67 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126
Query: 58 ---SSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
S V H W + S V D ++ K + +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKV------GPDGTPYVTVLKSWISESVEA 180
Query: 103 VTKL-----TTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
+L + + + A N IG + ++ V P AE +++
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGV---AEKAFWLSVHGPRAAEEELVEAD------- 230
Query: 158 FQSSVTLECVVS 169
+ ++
Sbjct: 231 --EAGSVHHHHH 240
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 80.8 bits (199), Expect = 2e-18
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 33 SATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE---SHDKDEFM 89
S + P P + + S+ L+W Q + L + +
Sbjct: 6 SGMEPHKV-VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 90 VWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ I +T + V L + Y FR+ + G S
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYS 104
Score = 46.5 bits (110), Expect = 2e-06
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
Q L + I++++ + + ++ VE L ++ Y F++ + G
Sbjct: 50 QWLRFSIEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE 102
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 88.7 bits (220), Expect = 2e-18
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 2/128 (1%)
Query: 37 KVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-E 95
V + P P P I D +V L W+PP DG S VT Y +E + W+ +
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMG-GSWSPCAK 61
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
+ T + L +Y FR+ A N G T V++ + +
Sbjct: 62 SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKI 121
Query: 156 AGFQSSVT 163
+ +V+
Sbjct: 122 VRGKGTVS 129
Score = 80.7 bits (199), Expect = 7e-16
Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVARFTV 201
P + G S C V P + W+KDD +K Y N T+
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+G YT +A N GT E L V
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 74.9 bits (184), Expect = 5e-14
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
P FI + V E + +V AS P + W ++++ L S K + ++G +
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND 537
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L + + D G+Y V A N G+ + V
Sbjct: 538 YGLTINRVKGD-DKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 61.0 bits (148), Expect = 9e-10
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 1/131 (0%)
Query: 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWK 527
A PP+ R + + ++ + +++ + A +
Sbjct: 443 DAWPEPLPPLGR-ISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSAN 501
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587
+ P ++W K+ E+ S + + I V D YTV A N+
Sbjct: 502 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561
Query: 588 GSTSLDLSLQV 598
G+ + L V
Sbjct: 562 GTKEEIVFLNV 572
Score = 48.3 bits (115), Expect = 8e-06
Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)
Query: 231 VQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290
+ I ++R T+ + IK + D + L +S L +
Sbjct: 414 LTPGNAPGRDSQIPSSRYTKIRDSIKT--KYDAWPEPLPPLG--RISNYSSLRKHRPQEY 469
Query: 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKES 349
S +W S++ P P T V A F + S V W K +E+K+S
Sbjct: 470 SIRDAFWDRSEAQPRF---IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS 526
Query: 350 ARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382
+++ G L I RV DD+ + V A N
Sbjct: 527 VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Score = 45.6 bits (108), Expect = 6e-05
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
V Y I+++E ++ A + T+E LR +Y F++ AEN G
Sbjct: 41 VTNYTIEKREAMGGSWSPCAKSRYTY--TTIEGLRAGKQYEFRIIAENKHG 89
Score = 44.8 bits (106), Expect = 9e-05
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+KDD +K Y N T+ +G YT +A N GT E
Sbjct: 517 HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEE 566
Score = 34.8 bits (80), Expect = 0.13
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ LTI + + D G+YT+ N+ G +
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 83.0 bits (205), Expect = 2e-18
Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 18/144 (12%)
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
+ Y + K + + N + VKA P I +
Sbjct: 55 NMEYRINKPRAEDSGEYHCVYHFV---SAPKANAT-IEVKAA-----PDITGHKRSENKN 105
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLI-------KGR-NITYENNVARFTVVNCSESS- 208
+ C G P P+ W K ++ + GR I + N +VN +
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 209 EGRYTCKATNEAGTAETSCTLLVQ 232
G Y C ATN G+A S L V+
Sbjct: 166 PGEYECNATNSIGSASVSTVLRVR 189
Score = 79.9 bits (197), Expect = 2e-17
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 16/126 (12%)
Query: 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 704
+ V P+A + A AP + E + K P P
Sbjct: 76 HFVS-APKANATIEVKA----------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEW 124
Query: 705 VWFRNNKPLLSSPKKRE-----IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759
+W + + I L + D G+Y+ ATN +GSA+
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Query: 760 RVTVDV 765
+ V V
Sbjct: 185 VLRVRV 190
Score = 72.6 bits (178), Expect = 9e-15
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI--KWYKDDSLIKGRNITYENNVARFTV 201
P I + + VTL+C ++ + W K+ + N + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME--YRI 60
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK-EIKESARHIITARGTQ 250
G Y C + + + T+ V+ +I R G
Sbjct: 61 NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQD 109
Score = 58.7 bits (142), Expect = 4e-10
Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 57/200 (28%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
K+ + N + + G Y C + +
Sbjct: 40 TKNGVELTATRKNASNME--YRINKPRAEDSGEYHCVY-HFVSAPKA------------- 83
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+++++ P + + +S+ +
Sbjct: 84 -----------------------------NATIEVKAAPD------ITGHKRSENKNEGQ 108
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKAC---RIFI--DEETSTIAIYSV-VRADTST 578
+ K G+P PE W K + + + R FI E + + I ++ + D
Sbjct: 109 DAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168
Query: 579 YTVTATNAAGSTSLDLSLQV 598
Y ATN+ GS S+ L+V
Sbjct: 169 YECNATNSIGSASVSTVLRV 188
Score = 56.4 bits (136), Expect = 3e-09
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENII 729
P + E + L + +S W +N L ++ K + N+
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NASNME 57
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ + +E D+G+Y V + + + A + V
Sbjct: 58 YRINKPRAE-DSGEYHCVY-HFVSAPKANATIEVKA 91
Score = 49.5 bits (118), Expect = 7e-07
Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 54/186 (29%)
Query: 313 PSVTLVPHLGDATFQVELSS---PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVT 369
V + L T Q L+S + W K G E+ + ++ I +
Sbjct: 10 EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME-----YRINKPR 64
Query: 370 QDDE-----------TDIGVLALNVKS----VSKLKWLDFGSGG---------------- 398
+D + VK+ + + G
Sbjct: 65 AEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEW 124
Query: 399 -WWFESKYKDDSLI-------KGR-NITYENNVARFTVVNCSESS-EGRYTCKATNEAGT 448
W K ++ + GR I + N +VN + G Y C ATN G+
Sbjct: 125 MW-----RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179
Query: 449 AETRTM 454
A T+
Sbjct: 180 ASVSTV 185
Score = 44.1 bits (104), Expect = 5e-05
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEIS--WMKNGAEITDSKACRI 557
Q+ P+ + ++ + ++ + W KNG E+T ++
Sbjct: 1 QNEPR------IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK--- 51
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ I D+ Y + + + +++V
Sbjct: 52 --NASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA 91
Score = 29.8 bits (67), Expect = 2.5
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
+ I K +D G+Y + + + A + + +AP
Sbjct: 52 NASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAP 93
Score = 29.0 bits (65), Expect = 4.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 2 EEDSATLTIVKFEDK-DLGDYTISLSNALGQASATTKVT 39
+E+ L IV + D G+Y + +N++G AS +T +
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 85.9 bits (212), Expect = 2e-18
Identities = 32/238 (13%), Positives = 60/238 (25%), Gaps = 18/238 (7%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNA-LGQASATTKVTLLSAPGAPDTP-EIVGRSDSS 59
E +A+L + +D G+YT G S + +L+ P ++ +
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPV 134
Query: 60 VTLHWRPPQDDGHSPVT-----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
G P + + T ++ + + +
Sbjct: 135 PMARCVST--GGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNV 192
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
+ P + V P V ++ Q+ TL C P P
Sbjct: 193 TCKVEHESFEKPQLLTVN-LTVYYP----PEVSISGYDNNWYLGQNEATLTCDARSNPEP 247
Query: 175 -DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
W + + V + C TN G + T+ V
Sbjct: 248 TGYNWSTTMGPLP-PFAVAQGAQLLIRPV--DKPINTTLICNVTNALGARQAELTVQV 302
Score = 54.3 bits (130), Expect = 5e-08
Identities = 37/281 (13%), Positives = 71/281 (25%), Gaps = 84/281 (29%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK---YFGFPRPEISWM 543
P ++ L++ + PQ A Q++ + + + G P +I+W
Sbjct: 102 PQGSRSVDIWLRVLAKPQNTAE--------VQKVQLTGEPVPMARCVSTGGRPPAQITWH 153
Query: 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYII 603
+ + ++ V + T TVT
Sbjct: 154 SDLGGMPNTS----------------QVPGFLSGTVTVT--------------------- 176
Query: 604 QQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
S + D + E+ P+ T V L +
Sbjct: 177 ------------------SLWILVPSSQVDGKNVTCK--VEHESFEKPQLLT--VNLTVY 214
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREI 722
+ I ++ + L +++P P W PL P
Sbjct: 215 YP------PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL---PPFAVA 265
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ +I + + TN LG+ V V
Sbjct: 266 QGAQLLIRPV----DKPINTTLICNVTNALGARQAELTVQV 302
Score = 49.7 bits (118), Expect = 2e-06
Identities = 29/201 (14%), Positives = 55/201 (27%), Gaps = 58/201 (28%)
Query: 405 YKDDSLIKGRNITYENNVARFTV------VNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
+ D + + TV V S+ TCK +E+
Sbjct: 153 HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP-------- 204
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
+ T NL + PP+ + S +
Sbjct: 205 --------------------------------QLLTVNLTVYYPPE-----VSISGYDNN 227
Query: 519 RLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+++ + P P +W + F + + + I V + +
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP------FAVAQGAQLLIRPVDKPINT 281
Query: 578 TYTVTATNAAGSTSLDLSLQV 598
T TNA G+ +L++QV
Sbjct: 282 TLICNVTNALGARQAELTVQV 302
Score = 47.4 bits (112), Expect = 1e-05
Identities = 16/138 (11%), Positives = 32/138 (23%), Gaps = 15/138 (10%)
Query: 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI 690
+ D+ Y L LA P ++ + +
Sbjct: 88 VEDEGNYTCLFV--TFPQGSRSVDIWLRVLA----------KPQNTAEVQKVQLTGEPVP 135
Query: 691 RLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL--KEADSETDAGDYKVV 747
P I W + + ++ + G + L S+ D +
Sbjct: 136 MARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCK 195
Query: 748 ATNELGSATHGARVTVDV 765
+E V + V
Sbjct: 196 VEHESFEKPQLLTVNLTV 213
Score = 42.0 bits (98), Expect = 5e-04
Identities = 24/118 (20%), Positives = 31/118 (26%), Gaps = 30/118 (25%)
Query: 145 PVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPD-----IKWYKDDSLIK------------ 186
V+Q P V GF SVTL C + + W +
Sbjct: 2 VVVQAP--TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSY 59
Query: 187 ---------GRNITYENNVARFTVVNCSESSEGRYTCKA-TNEAGTAETSCTLLVQGK 234
+ E A + EG YTC T G+ L V K
Sbjct: 60 SESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
Score = 38.2 bits (88), Expect = 0.009
Identities = 15/157 (9%), Positives = 34/157 (21%), Gaps = 40/157 (25%)
Query: 331 SSPDIQVKWLKKGKEIKESARHIITSRGT---QRKLVIKRVTQDD--------------E 373
P Q+ W + +++ GT ++ +Q D +
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
Query: 374 TDIGVLALNVKSVSKLKWLDFGSGGWWFESK-------------------YKDDSLIKGR 414
+ + L V ++ + W+ +
Sbjct: 204 PQLLTVNLTVYYPPEV-SISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP-P 261
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+ V + C TN G +
Sbjct: 262 FAVAQGAQLLIRPV--DKPINTTLICNVTNALGARQA 296
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 83.8 bits (207), Expect = 2e-18
Identities = 47/250 (18%), Positives = 68/250 (27%), Gaps = 78/250 (31%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P + W+KNG E
Sbjct: 45 GNPMPTMRWLKNGKEFKQE----------------------------------------- 63
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+G + + SL V DK Y EN G
Sbjct: 64 ---HRIGGYKVRNQHWSLIMESV-------------VPSDKGNY--TCVVENEYGSI-NH 104
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-- 711
T L + S + L + G + + KV + P I W ++ +
Sbjct: 105 TYHLDVVER-----SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 159
Query: 712 ---------PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
P L K I +L L +E DAG+Y +N +G A A +T
Sbjct: 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV-TEADAGEYICKVSNYIGQANQSAWLT 218
Query: 763 VDVEKVGRPS 772
V + K P
Sbjct: 219 V-LPKQQAPG 227
Score = 83.8 bits (207), Expect = 3e-18
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
N G+ +H ++ V + ++ V C V P I+
Sbjct: 95 VENEYGS--INHTY-HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ 151
Query: 178 WYKDDSLIKGR--------------NITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
W K + + +N + N +E+ G Y CK +N G A
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 224 ETSCTLLVQGKE 235
S L V K+
Sbjct: 212 NQSAWLTVLPKQ 223
Score = 80.7 bits (199), Expect = 3e-17
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 142 AEAPVIQEPLK----DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYE 193
AP K ++V C G P P ++W K+ K
Sbjct: 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
N + + S +G YTC NE G+ + L V +
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114
Score = 69.2 bits (169), Expect = 3e-13
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 668 SPGQAPLFIERFEEK----TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREI 722
+ +AP + + + V T++ +P P++ W +N K +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
++ L ++ +D G+Y V NE GS H + V RP +
Sbjct: 71 VRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPIL 120
Score = 66.5 bits (162), Expect = 3e-12
Identities = 31/210 (14%), Positives = 51/210 (24%), Gaps = 58/210 (27%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
K+ K N + + S +G YTC NE G+
Sbjct: 54 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH--------- 104
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T +L + + I +
Sbjct: 105 ---------------------------------TYHLDVVERSRHRPILQAGL-PANAST 130
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKN-----------GAEITDSKACRIFIDEETSTIAIY 569
V + K + +P I W+K+ G +A++
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+V AD Y +N G + L VL
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 44.1 bits (104), Expect = 7e-05
Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 49/188 (26%)
Query: 313 PSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQ 370
+ VP F+ +P ++WLK GKE K+ R R L+++ V
Sbjct: 26 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 85
Query: 371 DD--------ETDIGVL----ALNVKSVSKLK---------------------------- 390
D E + G + L+V S+ +
Sbjct: 86 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSD 145
Query: 391 ------WL-DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443
W+ G + + + +N + N +E+ G Y CK +
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
Query: 444 NEAGTAET 451
N G A
Sbjct: 206 NYIGQANQ 213
Score = 38.3 bits (89), Expect = 0.005
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE 51
++ L + + D G+Y +SN +GQA+ + +T+L AP +
Sbjct: 181 SSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 34.1 bits (78), Expect = 0.13
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP 47
+ +L + D G+YT + N G + T + ++
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 82.5 bits (204), Expect = 3e-18
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 13/123 (10%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
++R A +A G T + + +E + + C VS P
Sbjct: 72 IYRCQATDAKGQ--TQEATVVLEIYQK-----LTFREVVSPQEFKQGEDAEVVCRVSSSP 124
Query: 173 TPDIKWYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
P + W + + R NN ++N ++S EG Y C+ EA
Sbjct: 125 APAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEGRVEARGEIDFRD 182
Query: 229 LLV 231
++V
Sbjct: 183 IIV 185
Score = 81.4 bits (201), Expect = 8e-18
Identities = 29/204 (14%), Positives = 55/204 (26%), Gaps = 55/204 (26%)
Query: 399 WWFESKYKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
W+ I + E +R T+ N + G Y C+AT+ G + T+
Sbjct: 35 WY----NPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV- 89
Query: 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNL 515
L+I +
Sbjct: 90 ----------------------------------------VLEIYQKLT------FREVV 103
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
Q +V + P P +SW+ + E+T R + + + I ++ ++D
Sbjct: 104 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSD 162
Query: 576 TSTYTVTATNAAGSTSLDLSLQVL 599
Y A + V+
Sbjct: 163 EGIYRCEGRVEARGEIDFRDIIVI 186
Score = 80.6 bits (199), Expect = 1e-17
Identities = 40/253 (15%), Positives = 68/253 (26%), Gaps = 76/253 (30%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L LSV G P + G +I ++ + + S
Sbjct: 9 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS---------- 58
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
L N+ D
Sbjct: 59 -----------------------------------RLTIYNA-------------NIEDA 70
Query: 635 SEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMA 694
Y + A ++ G EAT L Q F E + K+ ++
Sbjct: 71 GIY--RCQATDAKGQTQEATVVLEIY----------QKLTFREVVSPQEFKQGEDAEVVC 118
Query: 695 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN--IILELKEADSETDAGDYKVVATNEL 752
+V +SPAP++ W +N+ + + R N IL + +++D G Y+ E
Sbjct: 119 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNI----NKSDEGIYRCEGRVEA 174
Query: 753 GSATHGARVTVDV 765
+ V V
Sbjct: 175 RGEIDFRDIIVIV 187
Score = 76.7 bits (189), Expect = 3e-16
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFT 200
+ L S C G P + I + E +R T
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ N + G Y C+AT+ G + + +L
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEATVVLE 92
Score = 66.3 bits (162), Expect = 1e-12
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
+ + + P + + ++S+ + +G L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 732 LKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765
+ A + DAG Y+ AT+ G + +
Sbjct: 62 IYNA-NIEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
Score = 51.7 bits (124), Expect = 1e-07
Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 47/182 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+ L V L F P+ + +G++I + R ++ G + +L I
Sbjct: 4 QVTISLSKVELSVG-ESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 366 KRVTQDD-------------ETDIGVLALNVKS----VSKLKWLDFGSGG---------- 398
+D +T + L + + +F G
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 399 -------WWFESKYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447
W + + R NN ++N ++S EG Y C+ EA
Sbjct: 123 SPAPAVSW-----LYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEGRVEAR 175
Query: 448 TA 449
Sbjct: 176 GE 177
Score = 30.9 bits (70), Expect = 0.96
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDSS 59
E + LTI +D G Y ++A GQ AT + + + +
Sbjct: 54 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED 113
Query: 60 VTLH 63
+
Sbjct: 114 AEVV 117
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 85.5 bits (211), Expect = 3e-18
Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 41/264 (15%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE--------I 52
+ + L V + +D G Y + N+ +
Sbjct: 57 IHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLP 116
Query: 53 VGRSDSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKL 106
V V + +++ + L + V +
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI-------HFSGVKDRLIVMNV 169
Query: 107 TTKHEYMFR-VAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV-AGFQSSVTL 164
KH + A+ +G + PVI P +++ S + L
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Query: 165 ECVVSGVPTPDIKWYKDDSLIK-----------------GRNITYENNVARFTVVNCSES 207
C V+G + W + S+I + + V + + S
Sbjct: 230 ICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE-SRF 288
Query: 208 SEGRYTCKATNEAGTAETSCTLLV 231
+ +TC A N G L+
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 82.5 bits (203), Expect = 4e-17
Identities = 38/283 (13%), Positives = 72/283 (25%), Gaps = 55/283 (19%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ I+W K+ ++ S I + + D+ Y N++ + +S
Sbjct: 34 HKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS 93
Query: 596 LQV------LGYIIQQQEKNSLKFTKVATLD-PSTLQYTVEN--------------LRDK 634
+ L Y Q K L L P + EN L
Sbjct: 94 AKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD 153
Query: 635 SEYYFQV-------------------FAENSVGLGPEATTELVALATHATLGSPGQAPLF 675
+ ++ V A + T ++ T P+
Sbjct: 154 NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT--RPVI 211
Query: 676 IERFEEKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR------------EI 722
+ E + G I+L+ V + W N + +
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+L + E +S + A N G ++ V
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
Score = 72.1 bits (176), Expect = 8e-14
Identities = 40/369 (10%), Positives = 65/369 (17%), Gaps = 126/369 (34%)
Query: 143 EAPVIQ--EPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLI-----KGRNITYEN 194
EA + E V+ C ++ I WYKDDS + I
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ---------------------- 232
F G Y C N + +
Sbjct: 62 EKLWFVPA--KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
Query: 233 ---------------------------GKEIKESARHIITARGTQRKLVIKRVTQDDETD 265
K + H + L++ V +
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHR-- 174
Query: 266 IGV---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLG 322
G A + ++ + + E +S V
Sbjct: 175 -GNYTCHASY--TYLGKQYPITRVIEFITL------EENKPTRPVIVSPANETMEVDLGS 225
Query: 323 DATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381
W G I E + + KR + L
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV------L 279
Query: 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441
N+ + + +TC
Sbjct: 280 NISEIES-----------------RFYK--------------------------HPFTCF 296
Query: 442 ATNEAGTAE 450
A N G
Sbjct: 297 AKNTHGIDA 305
Score = 69.0 bits (168), Expect = 9e-13
Identities = 44/356 (12%), Positives = 80/356 (22%), Gaps = 108/356 (30%)
Query: 305 AVEFLSKLPSVTLVPHLGDATF---QVELSSPDIQVKWLKKGKEI---KESARHIITSRG 358
A + + + LV + + + + W K + E A I +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 359 TQRKLVIKRVTQDDE------------TDIGVLALNV----------KSVSKLKWLDFGS 396
L +D ++ + L
Sbjct: 63 K---LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
Query: 397 GG---------------------WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSE 435
G W YKD + NI + R V+N +E
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQW-----YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHR 174
Query: 436 GRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495
G YTC A+ + + I + + +P
Sbjct: 175 GNYTCHASYTYLGKQY-----PITRVIEFITLEENKPTRPV------------------- 210
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--- 552
I SP + + S ++ + G W NG+ I +
Sbjct: 211 ---IVSPANETMEVDLGSQIQ-----------LICNVTGQLSDIAYWKWNGSVIDEDDPV 256
Query: 553 ---------KACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGSTSLDLSLQV 598
+ + I + +T A N G + + L
Sbjct: 257 LGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 66.7 bits (162), Expect = 6e-12
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 10/132 (7%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC------VVSGV 171
N+ V+ + + L C
Sbjct: 81 VRNSSYC--LRIKISAKFVENE--PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENN 136
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
P ++WYKD + NI + R V+N +E G YTC A+ + T ++
Sbjct: 137 ELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Query: 232 QGKEIKESARHI 243
+ ++E+
Sbjct: 197 EFITLEENKPTR 208
Score = 57.8 bits (139), Expect = 5e-09
Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 20/168 (11%)
Query: 605 QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664
Q K L F + D YY NS +
Sbjct: 58 HQHKEKLWFVPA-------------KVEDSGHYYCV--VRNSSY-CLRIKISAKFVENEP 101
Query: 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
L QA + K + + P + W+++ KPLL
Sbjct: 102 NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK 161
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
I++ + +E G+Y A+ + ++ +
Sbjct: 162 DRLIVMNV----AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK 205
Score = 49.7 bits (118), Expect = 2e-06
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 671 QAPLFIERFEEK-TVKEKGTIRLMA-KVKASPAP-SIVWFRNNKPLLSSPKKREIFDGEN 727
+A ER E+ V I + + + +I W++++ S ++
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L A E D+G Y V N
Sbjct: 62 EKLWFVPAKVE-DSGHYYCVVRNSSYCLRIKISAKF 96
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 79.4 bits (196), Expect = 4e-18
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S + F L V G F VEL+ P ++VKW K G+EI+ S ++I +G
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390
QR L I D+++ V A + K ++L
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGDEKCSTELF 92
Score = 72.4 bits (178), Expect = 9e-16
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 142 AEAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVA 197
+ + L + + V ++ P ++KWYK+ I+ ++
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ NC + + Y AG + S L V+
Sbjct: 64 ILFINNCQMTDDSEYYV----TAGDEKCSTELFVR 94
Score = 64.7 bits (158), Expect = 4e-13
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 667 GSPG-QAPLFIERFEEKT-VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G F + + V + G +R + ++ A P + W++N + + S K
Sbjct: 1 GSSGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
G IL + D +Y V A G + V
Sbjct: 60 GCQRILFINNCQMT-DDSEYYVTA----GDEKCSTELFV 93
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P+ E+ W KNG EI S + I + D S Y VTA + ST L
Sbjct: 33 ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTEL 91
Score = 36.2 bits (84), Expect = 0.005
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
YK+ I+ ++ + NC + + Y A +E + E
Sbjct: 42 YKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 78.5 bits (194), Expect = 7e-18
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 142 AEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVA 197
+ P I +PL+D V L C +S TP + W KD I+ ++ E +A
Sbjct: 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
+ S G YTC+ TA L V+ K S
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTAS----LHVEEKASGPS 101
Score = 76.2 bits (188), Expect = 4e-17
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G + I+ E++ V + L ++ + P + W ++ K + S K + +
Sbjct: 1 GSSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
G +L ++ A + DAG+Y + A + V+ EK PS
Sbjct: 60 GTMAMLVIRGASLK-DAGEYTCEVEASKST----ASLHVE-EKASGPS 101
Score = 72.7 bits (179), Expect = 8e-16
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S S+ + L + P D + ELS V WLK K I++S ++ + GT
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPG-EDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGT 61
Query: 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389
LVI+ + D + KS + L
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKSTASL 91
Score = 54.6 bits (132), Expect = 2e-09
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L+ Q ++ ++ + P + W+K+ I S+ + + + + I
Sbjct: 15 LEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLK 73
Query: 575 DTSTYTVTATNAAGSTSL 592
D YT + + SL
Sbjct: 74 DAGEYTCEVEASKSTASL 91
Score = 42.3 bits (100), Expect = 4e-05
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
KD I+ ++ E +A + S G YTC+ TA
Sbjct: 42 LKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
Score = 26.9 bits (60), Expect = 8.9
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
E A L I KD G+YT + + +A+ V ++
Sbjct: 59 EGTMAMLVIRGASLKDAGEYTCEVEASKS--TASLHVEEKASG 99
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 87.3 bits (215), Expect = 7e-18
Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 23/191 (12%)
Query: 15 DKDLGDYTISLSNALGQASATTKVTLLSAPG-APDTPEIVGRSDSSVTLHWRPPQDDGHS 73
D + SN G K P + + W +
Sbjct: 131 DNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNIS-I 189
Query: 74 PVTGYVLE-------SHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125
YV++ +D+ W + +TT ++T + Y FRVAAVN GT
Sbjct: 190 EPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTR 249
Query: 126 PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW---YKDD 182
+ +++ A L +S SVT+ I W + D
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVT----------IVWDLPEEPD 299
Query: 183 SLIKGRNITYE 193
+ + +
Sbjct: 300 IPVHHYKVFWS 310
Score = 71.1 bits (173), Expect = 8e-13
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 11/128 (8%)
Query: 33 SATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--------SHD 84
+ +L+ P IV + + W+ + + + P+TG+ + +
Sbjct: 517 AGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQN 576
Query: 85 KDEFMVWNK---IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ ++ + + V L Y V + G GPA+ T P
Sbjct: 577 SLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSS 636
Query: 142 AEAPVIQE 149
A ++
Sbjct: 637 AHRSHLKH 644
Score = 48.8 bits (115), Expect = 7e-06
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 584 TNAAGSTSLDLS--------LQVLGYII------QQQEKNSLKFTKVATLDPSTLQYTVE 629
N+ GS ++ + + V Y + + K + T D +E
Sbjct: 280 VNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILE 339
Query: 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674
L+ +Y ++ A G + V+L +T + + L
Sbjct: 340 KLQPDCDYVVELQAITYWGQTRL-KSAKVSLHFTSTHATNNKEQL 383
Score = 48.4 bits (114), Expect = 9e-06
Identities = 23/209 (11%), Positives = 54/209 (25%), Gaps = 21/209 (10%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++ +L + + + Q + + P P V
Sbjct: 362 LKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAP-FYQDGQLQV 420
Query: 61 TLHWRPPQDDGHSPVTGYVLE------SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
++W+ +D V Y + +H++ + T + L+ +Y
Sbjct: 421 KVYWKKTED---PTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKV 477
Query: 115 RVAAVNAIGTGPASHNT------RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV 168
V + A + K+ + V +++ +V
Sbjct: 478 TVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIV 537
Query: 169 SGVP-TPDIKW----YKDDSLIKGRNITY 192
V T W + G +T+
Sbjct: 538 QDVNITGHFSWKMAKANLYQPMTGFQVTW 566
Score = 45.3 bits (106), Expect = 7e-05
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 18/116 (15%)
Query: 559 IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ---------VLGYIIQQQEKN 609
I + S V A + + + + S + + G+ + E
Sbjct: 511 IGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVT 570
Query: 610 SLK---------FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+ ++ L TV NLR + Y +V G GP
Sbjct: 571 TESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKT 626
Score = 42.3 bits (98), Expect = 7e-04
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 593 DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTL------QYTVENLRDKSEYYFQVFAENS 646
++S++ + Y++Q++ + ++ T+ + + ++R Y F+V A N
Sbjct: 186 NISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNV 245
Query: 647 VGLGPEATTELVALATHATLGSPGQAP 673
G T + +P
Sbjct: 246 HGTRG-FTAPSKHFRSSKDPSAPPAPA 271
Score = 38.0 bits (87), Expect = 0.014
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE 81
G A+ T T P + + R H++P + P+ +L
Sbjct: 620 GPATIKTFRTPELPPSSAHRSHLKHRHPH----HYKPSPERYGKPIPNPLLG 667
Score = 33.8 bits (76), Expect = 0.28
Identities = 5/62 (8%), Positives = 15/62 (24%), Gaps = 4/62 (6%)
Query: 600 GYIIQQQE----KNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
Y ++ N ++ ++ +++L +Y V
Sbjct: 434 RYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAV 493
Query: 656 EL 657
Sbjct: 494 FF 495
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 78.2 bits (193), Expect = 8e-18
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
E + + +VTL C V P+P I W KD G + + +
Sbjct: 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-----GVPLPLPPS-PVLILP 62
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+G Y+C AT+ + + S + + E
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 68.6 bits (168), Expect = 2e-14
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
++ S + + E V GT+ L +V A P+P I W ++ PL P
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------ 55
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ +L L E D G Y VAT+ V++ +
Sbjct: 56 ---SPVLILPEI-GPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 55.1 bits (133), Expect = 1e-09
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553
++ Q + + ++ + + P P+I WMK+G +
Sbjct: 2 SSGSSGLEEVQ------LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP- 54
Query: 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLSLQVL 599
+ + + + D TY+ AT+++ S +S+ ++
Sbjct: 55 --------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISII 94
Score = 31.2 bits (71), Expect = 0.24
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETR 452
+ +G Y+C AT+ + +
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQES 86
Score = 30.8 bits (70), Expect = 0.33
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 305 AVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
V+ + + + P G T E+ P Q+ W+K G + + L
Sbjct: 10 EVQLVVEPEGGAVAPG-GTVTLTCEVPAQPSPQIHWMKDGVPLP------LPPSPV---L 59
Query: 364 VIKRVTQDDE 373
++ + D+
Sbjct: 60 ILPEIGPQDQ 69
Score = 28.9 bits (65), Expect = 1.8
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTL 40
S L + + +D G Y+ +++ + V++
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 78.8 bits (194), Expect = 8e-18
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLES-HDKDEFMVWNK-IETTST 99
S+ +P + R+ V LHW PP + + GYVLE + V + + T T
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTET 63
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V L Y FR+ A S
Sbjct: 64 ELLVPGLIKDVLYEFRLVAFAGSFVSDPS 92
Score = 44.2 bits (104), Expect = 1e-05
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
+ GY+++ ++ + + + + V L Y F++ A + + T
Sbjct: 37 LDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
Query: 658 V 658
V
Sbjct: 97 V 97
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 78.6 bits (194), Expect = 9e-18
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 137 KAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYE 193
V I E L+D SS T C +S + W+ D + + I +
Sbjct: 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ 65
Query: 194 NN-VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
T+ + G EAG S L V K
Sbjct: 66 PGGYHVLTLRQLALKDSGTIYF----EAGDQRASAALRVTEKPSV 106
Score = 69.3 bits (170), Expect = 2e-14
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EI 722
++ G+ IE E+ V+E + ++ + + WF + PL ++ +
Sbjct: 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA 64
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
G +L L++ + D+G A G A + V
Sbjct: 65 QPGGYHVLTLRQLALK-DSGTIYFEA----GDQRASAALRV 100
Score = 58.9 bits (143), Expect = 9e-11
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSR-GTQR 361
V + L V V ATF+ +S + V W + + + I ++ G
Sbjct: 12 RRVHIIEDLEDVD-VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 362 KLVIKRVTQDDE 373
L ++++ D
Sbjct: 71 VLTLRQLALKDS 82
Score = 52.8 bits (127), Expect = 1e-08
Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 6/102 (5%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD 551
+ ++ +Q I +L+ + S + + W + +
Sbjct: 2 SSGSSGLVQGRR--VHII---EDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA 56
Query: 552 SKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
++ I + + + D+ T A + S +L
Sbjct: 57 NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAAL 98
Score = 29.7 bits (67), Expect = 1.2
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 405 YKDDSLIK---GRNITYENN-VARFTVVNCSESSEGRYTCKATNEAGTAE 450
+ D + + I + T+ + G +A ++ +A
Sbjct: 48 FLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAA 97
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 77.9 bits (192), Expect = 1e-17
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 39 TLLSAPGAPDTPEIVGR--SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET 96
+ S P AP ++ ++ + HW PP H + Y++E +W
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPP-IHTHGLIREYIVEYSRSGS-KMWASQRA 60
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
S E+ L Y RVAAV + G G S
Sbjct: 61 ASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWS 92
Score = 49.0 bits (117), Expect = 2e-07
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ YI++ S + ++ ++NL + Y +V A S G+G
Sbjct: 39 LIREYIVEYSRSGSKMWASQRA---ASNFTEIKNLLVNTLYTVRVAAVTSRGIGN 90
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 77.5 bits (191), Expect = 2e-17
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--------RNITYENN 195
AP I L+ + + V G P P ++W+ + +++ +
Sbjct: 4 APTITF-LESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ N + + G YT A NE G E + G
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 77.5 bits (191), Expect = 2e-17
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-- 728
I E T I VK +P P++ WF N L S N
Sbjct: 2 HFAPTITFLESPTSDHHWCIPF--TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 729 ---ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
L+L + + GDY ++A NE G +G P I+
Sbjct: 60 YHGCLQLDNP-THMNNGDYTLIAKNEYGKDEKQISAHF----MGWPGID 103
Score = 67.8 bits (166), Expect = 5e-14
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADT 576
W + G P+P + W NGA + +SK I + + + +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 577 STYTVTATNAAGSTSLDLSLQVLG 600
YT+ A N G +S +G
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMG 98
Score = 40.1 bits (94), Expect = 2e-04
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG 45
E L + + GDYT+ N G+ + PG
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 38.2 bits (89), Expect = 0.001
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQR-----KLVIKRVTQDD 372
P ++W G + ES T L + T +
Sbjct: 29 PKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMN 73
Score = 37.0 bits (86), Expect = 0.003
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 407 DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K + + N + + G YT A NE G E
Sbjct: 46 KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 80.6 bits (199), Expect = 2e-17
Identities = 42/242 (17%), Positives = 69/242 (28%), Gaps = 72/242 (29%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P I W K G ++
Sbjct: 35 GRPTPTIEWYKGGER-------------------------------------------VE 51
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
SL F ++ E + A N +G
Sbjct: 52 TDKDDPRSHRMLLPSGSLFFLRI----------VHGRKSRPDEGVYVCVARNYLG----- 96
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKP 712
A++ A+L F + + V + + + P P+I W ++ P
Sbjct: 97 ----EAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP 152
Query: 713 LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRP 771
L ++ I G+ +I + ++DAG Y V TN +G + A +TV RP
Sbjct: 153 LDDKDERITIRGGKLMITYTR----KSDAGKYVCVGTNMVGERESEVAELTVLE----RP 204
Query: 772 SI 773
S
Sbjct: 205 SF 206
Score = 76.0 bits (187), Expect = 9e-16
Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 12/135 (8%)
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
+ + E ++ A N +G V ++ D +
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGE------AVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 162 VTLEC-VVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATN 218
+EC G P P I W KD S + IT + +S G+Y C TN
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK--LMITYTRKSDAGKYVCVGTN 186
Query: 219 EAGTAETS-CTLLVQ 232
G E+ L V
Sbjct: 187 MVGERESEVAELTVL 201
Score = 72.9 bits (179), Expect = 9e-15
Identities = 33/176 (18%), Positives = 46/176 (26%), Gaps = 55/176 (31%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-------KGRNITY 192
+ P I E D + TL C G PTP I+WYK + + +
Sbjct: 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64
Query: 193 ENN---VARFTVVNCSESSEGRYTCKATNEAGTAETSC-TLLVQ---------------- 232
+ R S EG Y C A N G A + +L V
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 233 -------------------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
G + + I G L+I + D
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---LMITYTRKSDA 177
Score = 66.4 bits (162), Expect = 2e-12
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK----- 718
+L P +E + V + L K + P P+I W++ + + +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 719 KREIFDGENIILELKEAD-SETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSI 773
+ + G L + S D G Y VA N LG A +H A + V + R
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV---AILRDDF 114
Score = 62.9 bits (153), Expect = 3e-11
Identities = 35/205 (17%), Positives = 56/205 (27%), Gaps = 54/205 (26%)
Query: 407 DDSLIKGRNITYENN---VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463
D + + + R S EG Y C A N G A + +
Sbjct: 53 DKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDAS------LE 106
Query: 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523
V++ + D R P V ++ Q P
Sbjct: 107 VAILRDDFRQNPSDVMVA---------VGEPAVMECQPP--------------------- 136
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
G P P ISW K+G+ + D + I ++D Y
Sbjct: 137 ---------RGHPEPTISWKKDGSPLDDKD--ERIT-IRGGKLMITYTRKSDAGKYVCVG 184
Query: 584 TNAAG---STSLDLSLQVLGYIIQQ 605
TN G S +L++ ++
Sbjct: 185 TNMVGERESEVAELTVLERPSFVKA 209
Score = 42.1 bits (99), Expect = 3e-04
Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 48/190 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESA-----RHIITSRGT 359
+ + + AT + E P ++W K G+ ++ ++ G+
Sbjct: 11 RIVEHPSDLIVSKG-EPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 360 QRKLVIKRVTQDD--ETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIK 412
L R+ D GV +A N ++VS L+ F D +
Sbjct: 69 ---LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV 125
Query: 413 GRNITYE----------------NNVA------RFTV-------VNCSESSEGRYTCKAT 443
G E + R T+ +S G+Y C T
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGT 185
Query: 444 NEAGTAETRT 453
N G E+
Sbjct: 186 NMVGERESEV 195
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 79.9 bits (197), Expect = 2e-17
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
G EAT + +F + KE ++ V +S P
Sbjct: 81 VTAEDGTQSEATVNVKIFQ----------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
+I+W + ++ R I N L+++ +TD G Y+ + +
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 763 VDV 765
V V
Sbjct: 189 VIV 191
Score = 76.0 bits (187), Expect = 5e-16
Identities = 29/195 (14%), Positives = 52/195 (26%), Gaps = 33/195 (16%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
G +I W +G L + + +VWN ++++ T
Sbjct: 25 QVAGDAKDKDI----------SWF--SPNGE------KLSPNQQRISVVWNDDDSSTLT- 65
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
+ +++ GT S T V + + +
Sbjct: 66 -IYNANIDDAGIYKCVVTAEDGT--QSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117
Query: 162 VTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+ C V P I W + R I NN + ++ EG Y C+
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCEGR 175
Query: 218 NEAGTAETSCTLLVQ 232
A + V
Sbjct: 176 ILARGEINFKDIQVI 190
Score = 73.7 bits (181), Expect = 3e-15
Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 48/184 (26%)
Query: 416 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKP 475
+ +++ + T+ N + G Y C T E GT T+
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV--------------------- 93
Query: 476 PMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF 535
N++I + Q +
Sbjct: 94 --------------------NVKIFQKLM------FKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
P I W G ++ K R + + + I + + D TY A
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186
Query: 596 LQVL 599
+QV+
Sbjct: 187 IQVI 190
Score = 64.5 bits (157), Expect = 5e-12
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVP-TPDIKWYKDDS-LIKGRN-----ITYENNVA 197
+ S C V+G DI W+ + + + +++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQGK 234
T+ N + G Y C T E GT + + + K
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK 100
Score = 51.7 bits (124), Expect = 1e-07
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKR---EIFDGE 726
+ + + + + +V I WF N LS ++R D +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+ L + A + DAG YK V T E G+ V +
Sbjct: 61 SSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 48.3 bits (115), Expect = 2e-06
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 536 PRPEISWMKNGAEITDSKACRIFI---DEETSTIAIYSVVRADTSTYTVTATNAAGS-TS 591
+ISW E RI + D+++ST+ IY+ D Y T G+ +
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 592 LDLSLQVL 599
+++++
Sbjct: 91 ATVNVKIF 98
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 310 SKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEI--KESARHIITSRGTQRKLVIK 366
P+ DA ++ S + W KG+++ K+ R I+ S L I+
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---LQIR 160
Query: 367 RVTQDDE 373
+ + DE
Sbjct: 161 GIKKTDE 167
Score = 34.8 bits (80), Expect = 0.056
Identities = 27/192 (14%), Positives = 46/192 (23%), Gaps = 56/192 (29%)
Query: 311 KLPSVTLVPH-----LGD-ATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQR- 361
++ V +VP +G+ F QV + D + W E + I+
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 362 --KLVIKRVTQDD-------------ETDIGVLALNVKS----VSKLKWLDFGSGG---- 398
L I DD + + + + +F G
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 399 -------------WWFESKYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCK 441
W + R I NN + ++ EG Y C+
Sbjct: 121 VCDVVSSLPPTIIW-----KHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCE 173
Query: 442 ATNEAGTAETRT 453
A
Sbjct: 174 GRILARGEINFK 185
Score = 33.6 bits (77), Expect = 0.13
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALG-QASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
++DS+TLTI D G Y ++ G Q+ AT V + + P +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 60 VTLH 63
+
Sbjct: 118 AVIV 121
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 77.0 bits (190), Expect = 3e-17
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNV 196
+ + LK A ++ TL+C +S ++W K ++ + +
Sbjct: 4 GSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTR 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
+ + S + G Y+C G TS TL V+ +
Sbjct: 62 CELQIHDLSVADAGEYSC----MCGQERTSATLTVRALPAR 98
Score = 70.1 bits (172), Expect = 8e-15
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G + F + + K E T L + + S + W + + L + D
Sbjct: 1 GSSGSSGPARFTQDLKTKEASEGATATL--QCELSKVAPVEWKKGPETLRDGGRYSLKQD 58
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSAT 756
G L++ + DAG+Y + E SAT
Sbjct: 59 GTRCELQIHDLSVA-DAGEYSCMCGQERTSAT 89
Score = 67.0 bits (164), Expect = 1e-13
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S S+ F L + AT Q ELS V+W K + +++ R+ + GT
Sbjct: 3 SGSSGPARFTQDLKTKEASEG-ATATLQCELS-KVAPVEWKKGPETLRDGGRYSLKQDGT 60
Query: 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389
+ +L I ++ D + + ++ + L
Sbjct: 61 RCELQIHDLSVADAGEYSCMCGQERTSATL 90
Score = 54.7 bits (132), Expect = 2e-09
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+ W K + D + D + I+ + AD Y+ S +L
Sbjct: 34 KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSATL 90
Score = 37.0 bits (86), Expect = 0.003
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
K ++ + + + + S + G Y+C E +A
Sbjct: 41 KKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSAT 89
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 77.1 bits (190), Expect = 3e-17
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIET 96
+ S P A + S SS++L W P+ V Y ++ + ++T
Sbjct: 3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPS-GAVLDYEVKYHEKGAEGPSSVRFLKT 61
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ E+ L Y+ +V A + G GP
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAGYGPFG 93
Score = 50.9 bits (122), Expect = 5e-08
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
+ +SL L+ VL Y ++ EK + + V L S + + L+ + Y
Sbjct: 18 RSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASY 77
Query: 638 YFQVFAENSVGLGP 651
QV A + G GP
Sbjct: 78 LVQVRARSEAGYGP 91
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 77.0 bits (190), Expect = 3e-17
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRG 358
S S+ +E L + +T V A F+ E+S + KW K G E++ S R I+ G
Sbjct: 2 SSGSSGQLEVLQDIADLT-VKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVG 60
Query: 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390
KLVI V +DE D + K
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK 92
Score = 73.2 bits (180), Expect = 6e-16
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 667 GSPG-QAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G L ++ + TVK +V + + W++N + S +
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHV 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
G L + + E D GDY V S + A++ KV PS
Sbjct: 60 GRFHKLVIDDVRPE-DEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104
Score = 71.6 bits (176), Expect = 2e-15
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 138 APVDAEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYE 193
+ + + + + D +C VS KWYK+ ++ I++
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV 59
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEI 236
+ + + EG YT A + S L ++
Sbjct: 60 GRFHKLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIKV 100
Score = 57.0 bits (138), Expect = 3e-10
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ W KNG E+ SK I + I V D YT A S S L+
Sbjct: 35 EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94
Query: 596 LQ 597
Sbjct: 95 FL 96
Score = 38.9 bits (91), Expect = 6e-04
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
YK+ ++ I++ + + + EG YT A + +
Sbjct: 42 YKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK 92
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 76.6 bits (189), Expect = 5e-17
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 34 ATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD-EFMVWN 92
++ + +AP +SV+L W+ P+ + + Y ++ ++KD E ++
Sbjct: 1 GSSGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQP-NGIILEYEIKYYEKDKEMQSYS 59
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
++ +T V+ L Y+F+V A + G G S
Sbjct: 60 TLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFS 95
Score = 50.0 bits (120), Expect = 9e-08
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
AG TS+ L +L Y I+ EK+ + +TL T + TV L+ + Y
Sbjct: 21 RAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDK-EMQSYSTLKAVTTRATVSGLKPGTRY 79
Query: 638 YFQVFAENSVGLGP 651
FQV A S G G
Sbjct: 80 VFQVRARTSAGCGR 93
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 79.1 bits (195), Expect = 8e-17
Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSV 162
+ + + A N +G S + + + KD+ +
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQ-AVSRHASLQIA-----VLRDDFRVEPKDTRVAKGETA 126
Query: 163 TLECV-VSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV--------NCSESSEGRYT 213
LEC G+P P + W KD + +R +V N EG Y
Sbjct: 127 LLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYK 186
Query: 214 CKATNEAGTAETSC-TLLVQGK-EIKESARH 242
C A N GT E+S L+VQ K H
Sbjct: 187 CIAQNLVGTRESSYAKLIVQVKAAAHHHHHH 217
Score = 77.2 bits (190), Expect = 4e-16
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 138 APVDA--EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-----KGRNI 190
AP+ ++P I E D V TL C V G P P I+W+KD + K +
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 191 TYENNVARF--TVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232
+++ F T+ E G Y C A N G A + +L +
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
Score = 76.1 bits (187), Expect = 8e-16
Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 75/248 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P I W K+G V + ++ V +
Sbjct: 35 GKPEPTIEWFKDGEP----------------------VSTNEKKSHRVQFKD-------- 64
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+L F + ++ +++ + A+N VG
Sbjct: 65 ---------------GALFFYRT-----------MQGKKEQDGGEYWCVAKNRVG----- 93
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM-AKVKASPAPSIVWFRNNKP 712
A++ HA+L F ++ V + T L K P P+++W ++ P
Sbjct: 94 ----QAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVP 149
Query: 713 LLSSPKKREIFDGENIILE---LKEAD-SETDAGDYKVVATNELGSA-THGARVTVDVEK 767
L I++ L ++ D G+YK +A N +G+ + A++ V V
Sbjct: 150 LDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV-- 207
Query: 768 VGRPSINS 775
+ + +
Sbjct: 208 --KAAAHH 213
Score = 69.1 bits (169), Expect = 2e-13
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
A L Q+P IE + VK+ L KV+ P P+I WF++ +P+ ++ KK
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 724 ---DGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSI 773
DG + E D G+Y VA N +G A + A + + V R
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI---AVLRDDF 111
Score = 61.4 bits (149), Expect = 8e-11
Identities = 40/218 (18%), Positives = 61/218 (27%), Gaps = 62/218 (28%)
Query: 405 YKDDSLI-----KGRNITYENNVARF--TVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
+KD + K + +++ F T+ E G Y C A N G A
Sbjct: 44 FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA-------- 95
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
+R +LQI K
Sbjct: 96 ---------------------------------VSRHASLQIAVLR--DDF---RVEPKD 117
Query: 518 QRLSVKSQWKVE-VKYFGFPRPEISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSV 571
R++ +E G P P + W+K+G + D KA + + I +V
Sbjct: 118 TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 572 VRADTSTYTVTATNAAG---STSLDLSLQVLGYIIQQQ 606
D Y A N G S+ L +QV
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 46.0 bits (109), Expect = 1e-05
Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 47/192 (24%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKES---ARHIITSRGT-Q 360
+ + + + AT +VE P+ ++W K G+ + + + + G
Sbjct: 11 RIIEHPTDLVVKKN-EPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 361 RKLVIKRVTQDDETDIGVLALNV--KSVSKLKWLDFGSGGWWFESK-------------- 404
++ + D + +A N ++VS+ L F +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 405 ---------------YKDDSLIKGRNITYENNVARFTVV--------NCSESSEGRYTCK 441
KD + +R +V N EG Y C
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 442 ATNEAGTAETRT 453
A N GT E+
Sbjct: 189 AQNLVGTRESSY 200
Score = 28.7 bits (64), Expect = 6.3
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTP 50
D L I E D G+Y N +G S+ K+ + A
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 76.0 bits (187), Expect = 9e-17
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARF 199
P + + + + +E VV G P P + W + ++ ++ Y
Sbjct: 7 YPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 200 ----TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + G YT A N GTA + +
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
Score = 70.6 bits (173), Expect = 6e-15
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 729
P + EE ++ + I V+ +P P++ W N +PL S + E I
Sbjct: 6 YYPPRVVSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 730 ---LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + + + G+Y ++A N LG+A
Sbjct: 64 EGCLLFNKP-THYNNGNYTLIAKNPLGTANQTINGHFLK 101
Score = 70.2 bits (172), Expect = 9e-15
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC 555
L + PP+ + + ++ + +E G P P + W+ NG + +SK
Sbjct: 2 ALTVYYPPR---------VVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII 52
Query: 556 RIFIDEET----STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ +E + + YT+ A N G+ + ++ L
Sbjct: 53 HVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101
Score = 43.7 bits (103), Expect = 2e-05
Identities = 14/53 (26%), Positives = 18/53 (33%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVG 54
E L K + G+YT+ N LG A+ T L P D
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113
Score = 37.9 bits (88), Expect = 0.002
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQR----KLVIKRVTQDDE 373
P + WL G+ ++ES + L+ + T +
Sbjct: 33 PPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN 77
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 75.0 bits (185), Expect = 1e-16
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+E L V V A F++ELS PD+ +W KG+ + S I G + L++
Sbjct: 6 IEVEKPLYGVE-VFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 366 KRVTQDDETDIGVLALNVKSVSKLK 390
++ A N KS + LK
Sbjct: 65 HNCQLGMTGEVSFQAANTKSAANLK 89
Score = 68.1 bits (167), Expect = 2e-14
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
G+ + V T ++ + P W +PL +SP I DG+
Sbjct: 1 GAMAL-IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 727 NIILELKEADSETDAGDYKVVATNELGSAT 756
IL L G+ A N +A
Sbjct: 59 KHILILHNCQLG-MTGEVSFQAANTKSAAN 87
Score = 68.1 bits (167), Expect = 3e-14
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 142 AEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVA 197
A A + +++PL + E +S P +W + I +
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKH 60
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ NC G + +A N +++ L V+
Sbjct: 61 ILILHNCQLGMTGEVSFQAAN----TKSAANLKVK 91
Score = 55.4 bits (134), Expect = 8e-10
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P W G + S C I D + + +++ T + A N + +L
Sbjct: 32 PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAANL 88
Score = 35.4 bits (82), Expect = 0.010
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+ I + + NC G + +A N A
Sbjct: 39 KLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN 87
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 75.5 bits (186), Expect = 1e-16
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENNV 196
V A E L++ A ++ L C +S ++W+K ++ R ++ +
Sbjct: 15 VRALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDGDRHSLRQDGAR 72
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
+ G Y C G TS L V+ S
Sbjct: 73 CELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMPSGPS 111
Score = 69.7 bits (171), Expect = 1e-14
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
T A L F E + E T L + + S + W++ ++ L +
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVL--RCELSKMAPVEWWKGHETLRDGDRHSL 66
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSAT 756
DG L+++ +E DAG+Y + E SA
Sbjct: 67 RQDGARCELQIRGLVAE-DAGEYLCMCGKERTSAM 100
Score = 62.8 bits (153), Expect = 4e-12
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
++F L + A + ELS V+W K + +++ RH + G + +L
Sbjct: 18 LPIKFTEGLRNEE-ATEGATAVLRCELS-KMAPVEWWKGHETLRDGDRHSLRQDGARCEL 75
Query: 364 VIKRVTQDDE 373
I+ + +D
Sbjct: 76 QIRGLVAEDA 85
Score = 51.2 bits (123), Expect = 4e-08
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS--QWKVEVKYFGFPRPEISWMKNGAEITD 551
+ L +++ P L+++ + + + E+ + W K + D
Sbjct: 10 SAMLTVRALP--IKFT---EGLRNEEATEGATAVLRCELS----KMAPVEWWKGHETLRD 60
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+ D + I +V D Y S L
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAML 101
Score = 34.6 bits (80), Expect = 0.028
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+K ++ R ++ + + G Y C E +A
Sbjct: 52 WKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 78.7 bits (194), Expect = 2e-16
Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 9/143 (6%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL-------E 81
G S+ T P P S + L W P + +T Y + +
Sbjct: 84 GPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDD 142
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + + L Y + V A N G GP + +
Sbjct: 143 NRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRP 202
Query: 142 AEAPVIQEPLKDSVAGFQSSVTL 164
P+I + + +
Sbjct: 203 MSIPIIPDIPIVDAQSGEDYDSF 225
Score = 66.3 bits (162), Expect = 3e-12
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYE 102
GAP P + +W PP GY ++ D + +++ + E
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPAS 128
+T L +Y +V A A G GP S
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYS 87
Score = 52.9 bits (127), Expect = 9e-08
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 597 QVLGYIIQQQEKNS-----LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ Y + N KV +P +ENLR+ Y + V A N G GP
Sbjct: 128 EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP 187
Query: 652 EATTELVALATHATLGSPGQAPLFIE 677
E ++ LAT P P+ +
Sbjct: 188 E-REAIINLATQP--KRPMSIPIIPD 210
Score = 48.2 bits (115), Expect = 3e-06
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
A AAGS + + + +GY ++ + ++ LD + NL
Sbjct: 12 PNAK-AAGSRKIHFNWLPPSGKPMGYRVKYWIQGD-SESEAHLLDSKVPSVELTNLYPYC 69
Query: 636 EYYFQVFAENSVGLGPE 652
+Y +V A + G GP
Sbjct: 70 DYEMKVCAYGAQGEGPY 86
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 82.4 bits (203), Expect = 2e-16
Identities = 38/248 (15%), Positives = 72/248 (29%), Gaps = 15/248 (6%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIVG-----RSDSSVTLHWRPPQDDGHSPV 75
+ NALG+ ++ P+ P + S + L W P +
Sbjct: 173 VWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVII 231
Query: 76 TGYVLESHDKDEFMVWNKIET-----TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHN 130
Y ++ KD W++I T +++ V L EY+FR+ + G G S
Sbjct: 232 LKYNIQYRTKDA-STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 290
Query: 131 TRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI 190
+ D + K + Q T++ V +P + D +
Sbjct: 291 SEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRW 350
Query: 191 TYENNVARFTVVNCS-ESSEGRYTCK--ATNEAGTAETSCTLLVQGKEIKESARHIITAR 247
+ + RY N G ++ + + + A
Sbjct: 351 KSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAF 410
Query: 248 GTQRKLVI 255
L +
Sbjct: 411 PKDNMLWV 418
Score = 77.4 bits (190), Expect = 7e-15
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWR-PPQDDGHSPVTGYVLESHDKDEF 88
G + + P T + L W P D + + Y +
Sbjct: 482 GSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN 541
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
++++ T Y ++ LT+ YM R+AA G T
Sbjct: 542 ETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
Score = 77.0 bits (189), Expect = 1e-14
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 5/139 (3%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIVGR---SDSSVTLHWRPPQDDGHSPVTG 77
T+++ N +G S +T+ + P + + D+ + + W P++ +
Sbjct: 375 ATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 433
Query: 78 YVLESHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ + S W + + T TY L Y+ V V A G G Y+
Sbjct: 434 WCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQ 493
Query: 137 KAPVDAEAPVIQEPLKDSV 155
P ++ K+
Sbjct: 494 APPSKGPTVRTKKVGKNEA 512
Score = 68.1 bits (166), Expect = 6e-12
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 5/140 (3%)
Query: 3 EDSATLTIVKFEDKDLGDY-TISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++++T ++ I L Q + P P + +
Sbjct: 61 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMR 120
Query: 62 LHWRPPQDDGHSPVTGYVLESH-DKDEFMVWNKIETTSTTYEVTKLTTKH-EYMFRVAAV 119
W ++ T + L+S +F T T+ V T V A
Sbjct: 121 CEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE 178
Query: 120 NAIGTGPASHNTRYVVVKAP 139
NA+G + H V K
Sbjct: 179 NALGKVTSDHINFDPVYKVK 198
Score = 50.0 bits (119), Expect = 2e-06
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 160 SSVTLECVVS-------GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
S+ T CV+ V I W + I T N A S +
Sbjct: 19 SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQL 78
Query: 213 TCKATNEAGTAETSCTLLVQ 232
TC + + +
Sbjct: 79 TCNILTFGQLEQNVYGITII 98
Score = 48.1 bits (114), Expect = 9e-06
Identities = 42/289 (14%), Positives = 74/289 (25%), Gaps = 89/289 (30%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+ I T N A S + TC +
Sbjct: 45 KTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQN------------- 91
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA-IKLVDSNLKSQRLSVK 523
+ PP++P + + + K R
Sbjct: 92 ---------------------------VYGITIISGLPPEKPKNLSCIVNEGKKMRCE-- 122
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
W + + + D C+ D TS YS V V A
Sbjct: 123 --WDGGRETHLETNFTLKSEWATHKFAD---CKAKRDTPTSCTVDYSTVYFVNIEVWVEA 177
Query: 584 TNAAGS-------------------------------TSLDLS--------LQVLGYIIQ 604
NA G + L L+ + +L Y IQ
Sbjct: 178 ENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQ 237
Query: 605 QQEKNSLKFTKVATLD--PSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ K++ ++++ D + +TV++L+ +EY F++ G G
Sbjct: 238 YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 286
Score = 46.2 bits (109), Expect = 3e-05
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ Y I + + +D S +YT+ +L + Y ++ A G
Sbjct: 528 IRNYTIFYRTIIGNETAV--NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD 579
Score = 42.7 bits (100), Expect = 4e-04
Identities = 17/154 (11%), Positives = 35/154 (22%), Gaps = 38/154 (24%)
Query: 530 VKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
+ YF I W N I + I T++ ++ + + T
Sbjct: 32 MDYFHVNANYIVWKTNHFTIPKE---QYTIINRTASSVTFTDIASLNIQLTCNILTFGQL 88
Query: 590 TSLDLSLQVL-----------------------------------GYIIQQQEKNSLKFT 614
+ ++ + ++ +
Sbjct: 89 EQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFAD 148
Query: 615 KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
A D T + V AEN++G
Sbjct: 149 CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALG 182
Score = 38.4 bits (89), Expect = 0.009
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+L + + + + + Y NL + Y V + G G + +
Sbjct: 431 ILEWCVLSDKAPCITDWQQED-GTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 488
Score = 33.4 bits (76), Expect = 0.28
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 699 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758
A IVW N+ + + I + + + S ++ +L +G
Sbjct: 37 VNANYIVWKTNHFTIPKE--QYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYG 94
Query: 759 ARVTVDV 765
+ +
Sbjct: 95 ITIISGL 101
Score = 29.6 bits (66), Expect = 4.4
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
++L Y + S + + + Y + N VG A
Sbjct: 339 KILDYEVTLTRWKS------HLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT 392
Query: 657 LVAL 660
+ A
Sbjct: 393 IPAC 396
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 81.8 bits (201), Expect = 2e-16
Identities = 60/514 (11%), Positives = 124/514 (24%), Gaps = 120/514 (23%)
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
YE++ + + + G ++ T V P E +
Sbjct: 47 NNRKVYELSNVQEDSQP--MCYSNCPDGQ--STAKTFLTVYWTP---ERVELAPLPSWQP 99
Query: 156 AGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
G ++TL C V G + + + +K E TV+ + +
Sbjct: 100 VG--KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF 157
Query: 213 TCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALN 272
+C+ + QG E+ E+ + ++ ++
Sbjct: 158 SCRTELDLRP---------QGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208
Query: 273 VKSVSKLKWLARWTSDLESTAWFWWFESKS-TPAVEFLSKLPSVTLVPHL-----GDATF 326
V S+ L ++ + P V + + S + G
Sbjct: 209 VCSLDGLFPVSEAQ-------VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 327 QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386
+ + +T VI + E +
Sbjct: 262 TCAVILGNQSQ-----------ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR 310
Query: 387 SKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446
+K+ + L + E + ++C AT E
Sbjct: 311 AKVTL-----------NGVPAQPLGPRAQLL-------LKAT--PEDNGRSFSCSATLEV 350
Query: 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQP 506
+K +T L++ P+
Sbjct: 351 AGQLI--------------------------------------HKNQTRELRVLYGPRLD 372
Query: 507 AIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTI 566
+ SQ + +G P PE+ +K+G
Sbjct: 373 ER----DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG-------------TFPLPIG 415
Query: 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V R TY A + G + ++++ VL
Sbjct: 416 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 77.2 bits (189), Expect = 5e-15
Identities = 45/386 (11%), Positives = 80/386 (20%), Gaps = 89/386 (23%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+ + +K E TV+ + ++C+ + GL L
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ-------GLELFENT 176
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
S P P Q V +
Sbjct: 177 SAPYQLQTFVLPA------------------------TPPQLVSPRVLEVDTQGTVVCSL 212
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
F ++ + + ++ S A SV D T +T
Sbjct: 213 DGL-----FPVSEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 585 NAAG----STSLDLSLQVLGYIIQQQEKNSLKFTKVATL--------------------- 619
G T +++ K + T+
Sbjct: 265 VILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLG 324
Query: 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
+ L + + A V + L P ER
Sbjct: 325 PRAQLLLKATPEDNGRSFSCS--ATLEVAGQLIHKNQTRELRVLY-------GPRLDERD 375
Query: 680 --EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS 737
T E M + +P P + ++ L + + +
Sbjct: 376 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV--------------T 421
Query: 738 ETDAGDYKVVATNELGSATHGARVTV 763
G Y A + G T V V
Sbjct: 422 RDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 69.9 bits (170), Expect = 1e-12
Identities = 40/236 (16%), Positives = 69/236 (29%), Gaps = 37/236 (15%)
Query: 5 SATLTI-VKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP-EIVGRSDSSVTL 62
SA ++ V ED+ T ++ VT+ S P + + VT+
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 303
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK--HEYMFRVAAVN 120
+ H + + ++ T + F +A
Sbjct: 304 KC-----EAHPRAKVTL----------NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATL 348
Query: 121 AI-GTGPASHNTRYVVVKAPVDAEAPVIQEPL--KDSVAGFQSSVTLECVVSGVPTPDIK 177
+ G + TR + V P + E + S T C G P P++K
Sbjct: 349 EVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELK 403
Query: 178 WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
KD + + V + EG Y C+A + G T+ V
Sbjct: 404 CLKDGTF----------PLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 57.6 bits (138), Expect = 9e-09
Identities = 27/242 (11%), Positives = 56/242 (23%), Gaps = 28/242 (11%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALG--------QASATTKVTLLSAPGAPDTPEI- 52
E T T++ D +++ L SA ++ P P
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP 197
Query: 53 -VGRSDSSVTLHWRPPQDDGHSPVTGY-VLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
V D+ T+ S + L + + + ++ +
Sbjct: 198 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG 257
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
A + + V + + P L + VT++C
Sbjct: 258 TQRLTCAVILGNQSQETLQT---VTIYSF-----PAPNVILTKPEVSEGTEVTVKCEAHP 309
Query: 171 VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+ L + E + ++C AT E
Sbjct: 310 RAKVTLNGVPAQPLGPRAQLL-------LKAT--PEDNGRSFSCSATLEVAGQLIHKNQT 360
Query: 231 VQ 232
+
Sbjct: 361 RE 362
Score = 52.6 bits (125), Expect = 4e-07
Identities = 42/403 (10%), Positives = 80/403 (19%), Gaps = 95/403 (23%)
Query: 409 SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468
L K + NN + + N E + + C + G + +
Sbjct: 36 PLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPDGQSTAK---------------- 77
Query: 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528
V +RV + + L+ Q P
Sbjct: 78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR--------------------- 116
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
+ ++ E+ + T + + ++
Sbjct: 117 -------ANLTVVLLRGEKELKRE---PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 589 STSLDLSLQV-----------------LGYIIQQQEKNSLKFTKVATLDPSTLQYTVENL 631
L+L L + + V
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226
Query: 632 RDKSEYY---------FQVFAENSVGLGPEATTELVALATHATLGSPGQA-------PLF 675
F A SV E T L P
Sbjct: 227 LGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 286
Query: 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 735
+ V E + + + ++ G L LK A
Sbjct: 287 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPL------------GPRAQLLLK-A 333
Query: 736 DSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
E + + AT E+ T ++ + P ++ D
Sbjct: 334 TPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDC 376
Score = 48.3 bits (114), Expect = 7e-06
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220
SV + C S + L K + NN + + N E + + C +
Sbjct: 16 SVLVTCSTSCDQPMLLGIET--PLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPD 71
Query: 221 GTAETSCTLLVQ 232
G + L V
Sbjct: 72 GQSTAKTFLTVY 83
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 73.9 bits (182), Expect = 3e-16
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-----ITYENNV 196
+ ++ + L+D+ A V LEC VS ++KW+K+ I I E
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ +++ Y+ T ++S L V K
Sbjct: 64 HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKS 98
Score = 70.0 bits (172), Expect = 8e-15
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 667 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-- 723
GS G + + ++ E+ T + L +V + ++ WF+N + ++ PK R
Sbjct: 1 GSSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV 59
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+G+ IL ++ A DA +Y V+ T S A+++VD+
Sbjct: 60 EGKKHILIIEGATKA-DAAEYSVMTTGGQSS----AKLSVDL 96
Score = 68.5 bits (168), Expect = 2e-14
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEI--KESARHIITSR 357
S + + +L T + E+S D VKW K G+EI +R+ I
Sbjct: 2 SSGSSGIMVTKQLEDTT-AYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVE 60
Query: 358 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389
G + L+I+ T+ D + V+ +S +KL
Sbjct: 61 GKKHILIIEGATKADAAEYSVMTTGGQSSAKL 92
Score = 49.2 bits (118), Expect = 1e-07
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+ W KNG EI R I E + I +AD + Y+V T S L
Sbjct: 34 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKL 92
Score = 36.9 bits (86), Expect = 0.003
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 405 YKDDSLIKGRN-----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+K+ I I E + +++ Y+ T +A+
Sbjct: 41 FKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 91
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 76.4 bits (188), Expect = 3e-16
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNVAR 198
+ V L C V G+ PDI+W KD ++++ + Y ++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQG 233
++ + S GRY C+ + T + L V+G
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 73.7 bits (181), Expect = 3e-15
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-I 176
+ T S ++ V+ P KD + L C G P P I
Sbjct: 79 VEDGGET-EISQPV-WLTVEGV-----PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI 131
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSC-TLLVQ 232
W++ + I G + + V ++S ++C+A N G A + T+ +Q
Sbjct: 132 VWWRGTTKIGGP----APSPSVLNVTGVTQS--TMFSCEAHNLKGLASSRTATVHLQ 182
Score = 63.7 bits (155), Expect = 8e-12
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 672 APL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 729
A L + + TV + ++L V+ P I W ++ + + + ++ I
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 730 -LELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765
L LK +DAG Y + + + +TV+
Sbjct: 61 FLSLKSV-ERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 62.5 bits (152), Expect = 2e-11
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
E+ L P F ++ V +L + P P
Sbjct: 79 VEDGGETEISQPVWLTVEG----------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP 128
Query: 703 -SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
+IVW+R + + + + T + + A N G A+
Sbjct: 129 VTIVWWRGTTKIGGPAPSPSVLNVTGV----------TQSTMFSCEAHNLKGLASSRT-A 177
Query: 762 TVDVE 766
TV ++
Sbjct: 178 TVHLQ 182
Score = 57.9 bits (140), Expect = 9e-10
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 32/145 (22%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAG--- 588
G P+I W+K+GA + + I + E+ +++ SV R+D Y +
Sbjct: 28 GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 87
Query: 589 STSLDLSLQVLGYIIQQ------QEKNSLKFT-------------------KVATLDPST 623
S + L+++ + + + + + K+ PS
Sbjct: 88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP 147
Query: 624 LQYTVENLRDKSEYYFQVFAENSVG 648
V + + + A N G
Sbjct: 148 SVLNVTGVTQSTMF--SCEAHNLKG 170
Score = 56.7 bits (137), Expect = 2e-09
Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 62/193 (32%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
KD ++++ + Y ++ + ++ + S GRY C+ + T ++
Sbjct: 37 VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP------ 90
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
L ++ P K
Sbjct: 91 -----------------------------------VWLTVEGVPF------FTVEPKDLA 109
Query: 520 LSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578
+ + +++ + G P P I W + +I S + + V ++
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGV--TQSTM 160
Query: 579 YTVTATNAAGSTS 591
++ A N G S
Sbjct: 161 FSCEAHNLKGLAS 173
Score = 43.2 bits (102), Expect = 7e-05
Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 50/185 (27%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRK--L 363
+ + +T+ + + ++W+K G ++ + I L
Sbjct: 4 KLMGAPVKLTVSQG-QPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 364 VIKRVTQDDE------------TDIGVLA-LNVKS----VSKLKWLDFGSGG-------- 398
+K V + D T+I L V+ + K L
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 399 ----------WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
WW + + I G + + V ++S ++C+A N G
Sbjct: 123 VGPPEPVTIVWW-----RGTTKIGGP----APSPSVLNVTGVTQS--TMFSCEAHNLKGL 171
Query: 449 AETRT 453
A +RT
Sbjct: 172 ASSRT 176
Score = 29.8 bits (67), Expect = 2.5
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDSS 59
+ L++ E D G Y + + S +T+ P P+ + ++
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAP 115
Query: 60 VTLH 63
L
Sbjct: 116 FQLS 119
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 73.9 bits (182), Expect = 3e-16
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNV 196
+ I PL D + L+C +S KW K+ ++ + + +
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRI 60
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + N EG Y +A + V
Sbjct: 61 HKLVIANALTEDEGDYVF--APDAYNVTLPAKVHVI 94
Score = 70.4 bits (173), Expect = 4e-15
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 667 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 725
GS G + L + ++TV I L K + S W +N P+ S + + + G
Sbjct: 1 GSSGSSGLKILTPLTDQTVNLGKEICL--KCEISENIPGKWTKNGLPVQESDRLKVVQKG 58
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + A +E D GDY + A+V V
Sbjct: 59 RIHKLVIANALTE-DEGDYVFAPDAYNVTLP--AKVHVIS 95
Score = 65.8 bits (161), Expect = 2e-13
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S + ++ L+ L T V + + E+S +I KW K G ++ES R + +G
Sbjct: 2 SSGSSGLKILTPLTDQT-VNLGKEICLKCEIS-ENIPGKWTKNGLPVQESDRLKVVQKGR 59
Query: 360 QRKLVIKRVTQDDE 373
KLVI +DE
Sbjct: 60 IHKLVIANALTEDE 73
Score = 52.7 bits (127), Expect = 8e-09
Identities = 8/62 (12%), Positives = 18/62 (29%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
W KNG + +S ++ + I + + D Y + + +
Sbjct: 35 IPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
Query: 598 VL 599
Sbjct: 95 SG 96
Score = 34.2 bits (79), Expect = 0.025
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
K+ ++ + + + + + N EG Y T +
Sbjct: 40 TKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK 90
Score = 31.9 bits (73), Expect = 0.18
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGA 46
+ L I +D GDY + + KV ++S P +
Sbjct: 57 KGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPSS 99
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 74.4 bits (183), Expect = 4e-16
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL--ESHDKD 86
+S V T PG D+S+ + W+ P + + +TGY + E +++
Sbjct: 3 SGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEK-NGILTGYRISWEEYNRT 61
Query: 87 EFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
V + + + Y VT LT Y VAA+ + G G S +T
Sbjct: 62 NTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 52.1 bits (125), Expect = 3e-08
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ GY I +E N L TL+Y V L + Y +V A S G G
Sbjct: 47 ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQ 101
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 73.5 bits (181), Expect = 4e-16
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-------ITYEN 194
+ +I PL+D V + VS + W K+ + + +
Sbjct: 6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ + GRY + L+V+ K+
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101
Score = 65.8 bits (161), Expect = 2e-13
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKES----ARHIIT 355
S S+ V ++ L + VE+S QV W+K G E+ AR+
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVG-DRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 356 SRGTQRKLVIKRVTQDDE 373
G + L+ V Q+D
Sbjct: 62 KDGKRHILIFSDVVQEDR 79
Score = 65.0 bits (159), Expect = 4e-13
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKR 720
GS G + L + E++ V + + +V + ++W +N L + R
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR 59
Query: 721 EIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756
DG+ IL + E D G Y+V+ A
Sbjct: 60 FKKDGKRHILIFSDVVQE-DRGRYQVITNGGQCEAE 94
Score = 46.9 bits (112), Expect = 9e-07
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 536 PRPEISWMKNGAEITDSKAC----RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
++ WMKNG E+T + R D + + VV+ D Y V
Sbjct: 35 EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94
Query: 592 L 592
L
Sbjct: 95 L 95
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 73.6 bits (181), Expect = 4e-16
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVARFTV 201
Q ++ A +S TL C V+ ++ WYKD + + + R V
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
++ G Y+C EAG + S L V G+
Sbjct: 71 QQAGQAEAGEYSC----EAGGQQLSFRLQVAGQ 99
Score = 68.2 bits (167), Expect = 3e-14
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 299 ESKSTPAVEFLSKLP---SVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIIT 355
S S+ V F + P V AT E++ +V W K GK++ S++ +
Sbjct: 2 SSGSSGKVVFAKEQPAHREVQ-AEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVE 60
Query: 356 SRGTQRKLVIKRVTQDDE 373
+ G R+LV+++ Q +
Sbjct: 61 AVGCTRRLVVQQAGQAEA 78
Score = 60.1 bits (146), Expect = 2e-11
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
E + + L +V A + W+++ K L SS K R G L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 733 KEADSETDAGDYKVVATNELGSAT 756
++A + +AG+Y A + S
Sbjct: 71 QQA-GQAEAGEYSCEAGGQQLSFR 93
Score = 54.3 bits (131), Expect = 2e-09
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ E++W K+G +++ S R+ T + + +A+ Y+ A S L ++
Sbjct: 38 AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQVA 97
Query: 596 LQVLG 600
Q G
Sbjct: 98 GQCFG 102
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
YKD + + + R V ++ G Y+C+A + +
Sbjct: 45 YKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 74.4 bits (183), Expect = 4e-16
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 26 SNALGQASATTKV----TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL- 80
S +G S + TL PG P +SV L W+PP + + Y +
Sbjct: 6 SGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAP-NGIILAYQIT 64
Query: 81 --ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + ++ Y T L + Y+FR+ A G G A+
Sbjct: 65 HRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAA 114
Score = 53.6 bits (129), Expect = 8e-09
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 597 QVLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+L Y I + + V L PS QYT L+ +S Y F++ A+ G G A
Sbjct: 57 IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA 116
Query: 656 ELV 658
+V
Sbjct: 117 LVV 119
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 78.3 bits (193), Expect = 5e-16
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 25 LSNALGQASATTKVTLLS-APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-- 81
+++ S+ +V A AP + + +S++ W PP +TGY +
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVT 56
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+K M + S++ V+ L +Y V A+ T +
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPA 103
Score = 73.7 bits (181), Expect = 2e-14
Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 21 YTISLS--NALGQ-ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
Y +S+ A VT L P + +++++T+ WR +TG
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK----TETITG 142
Query: 78 YVLESHDKDEFMVW-NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ +++ + I+ +Y +T L +Y + +N +
Sbjct: 143 FQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAI 202
Query: 137 KAPVD 141
AP +
Sbjct: 203 DAPSN 207
Score = 71.4 bits (175), Expect = 1e-13
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
DY I L N ++S +A AP + + +S+ + W+PP+ + +TG
Sbjct: 177 DYKIYLYTLNDNARSSPVVIDAS-TAIDAPSNLRFLATTPNSLLVSWQPPR----ARITG 231
Query: 78 YVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
Y+++ V + T +T L EY V A+
Sbjct: 232 YIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
Score = 57.1 bits (138), Expect = 6e-09
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 6/108 (5%)
Query: 560 DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFT 614
+S + + A + + T TSL +Q+ GY ++ K
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQV-TPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPM 64
Query: 615 KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662
K L P + V L ++Y V+A A + L
Sbjct: 65 KEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN 112
Score = 55.6 bits (134), Expect = 2e-08
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
A SL +S ++ GYII+ ++ S V P + T+ L +EY
Sbjct: 212 ATTPNSLLVSWQPPRARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIY 271
Query: 641 VFAENSVGLGPEATTE 656
V A +
Sbjct: 272 VIALKNNQKSEPLIGR 287
Score = 51.0 bits (122), Expect = 6e-07
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
T+A T++ +S + G+ + N + T+ P YT+ L+ +
Sbjct: 119 ARVTDA-TETTITISWRTKTETITGFQVDAVPANGQTPIQR-TIKPDVRSYTITGLQPGT 176
Query: 636 EYYFQVFAENSVGLGPEATT 655
+Y ++ N
Sbjct: 177 DYKIYLYTLNDNARSSPVVI 196
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 73.1 bits (180), Expect = 5e-16
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRG 358
E P F K SV V A F+ E ++V+W + G +I S ++ + + G
Sbjct: 2 EPGKKPVSAFSKKPRSVE-VAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEG 60
Query: 359 TQRKLVIKRVTQDDE 373
T+ L ++ V D+
Sbjct: 61 TRHTLTVREVGPADQ 75
Score = 71.6 bits (176), Expect = 2e-15
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 8/97 (8%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENN 195
P + + S E ++W + S I + + E
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
TV + +G Y AG+++ L V
Sbjct: 62 RHTLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 669 PGQAPL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
PG+ P+ F ++ V A+ + W R + +S K +G
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L ++E D G Y V+A GS+ + V
Sbjct: 62 RHTLTVREVGPA-DQGSYAVIA----GSSKVKFDLKV 93
Score = 52.3 bits (126), Expect = 1e-08
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE 561
P ++P +S ++ S E + ++ W + G++I+ S + +
Sbjct: 3 PGKKPVSAFS-KKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASNKYGLATEG 60
Query: 562 ETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
T+ + V AD +Y V A ++ L
Sbjct: 61 TRHTLTVREVGPADQGSYAVIAGSSKVKFDL 91
Score = 36.6 bits (85), Expect = 0.004
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+ S I + + E TV + +G Y A + +
Sbjct: 42 QRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFD 90
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 73.6 bits (181), Expect = 5e-16
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + + P P + V + + + W PP + V GY++ +
Sbjct: 4 GSSGPENDLDESQVPDQPSSLH-VRPQTNCIIMSWTPPLNPN-IVVRGYIIGYGVGSPYA 61
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
++++ Y + +L + Y+ + A N G G Y P
Sbjct: 62 ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL----YESATTRSITSGP 113
Score = 54.4 bits (131), Expect = 3e-09
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 587 AGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
+ + +S V GYII + + +D Y++E L S Y
Sbjct: 28 PQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPY--AETVRVDSKQRYYSIERLESSSHYV 85
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQA 672
+ A N+ G G T + P
Sbjct: 86 ISLKAFNNAGEGVPLYESAT---TRSITSGPSSG 116
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 73.9 bits (181), Expect = 6e-16
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 667 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREI 722
GS G LFIE+ + TVK I +AKVKA P+I WF+ L+S + +
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 723 ---------FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+++ +A + AG+Y+ T + + + V P+I
Sbjct: 61 QLKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119
Query: 774 NS 775
+S
Sbjct: 120 DS 121
Score = 65.0 bits (158), Expect = 8e-13
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYKDDSLIK----GRNITYE 193
+ + E + +T V P IKW+K + G+++ +
Sbjct: 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63
Query: 194 NNVARFTVV--------NCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
R + V ++ G Y C+ T + S L V
Sbjct: 64 ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112
Score = 46.5 bits (110), Expect = 2e-06
Identities = 18/109 (16%), Positives = 26/109 (23%), Gaps = 13/109 (11%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP---RPEISWMKNGAEITDSKACRIF 558
I + + + V K +P I W K SKA +
Sbjct: 2 SSGSSGILFI-EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 559 IDEE---------TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+E T + I Y T S L+V
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
Score = 38.8 bits (90), Expect = 0.001
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRS 56
+ + I+K +D G+Y ++ S + + + + G + S
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSS 125
Score = 36.5 bits (84), Expect = 0.006
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 400 WFESKYKDDSLIKGRNITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAET 451
WF+ K+ D + G+++ + R + V ++ G Y C+ T +
Sbjct: 44 WFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSC 103
Score = 33.8 bits (77), Expect = 0.062
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 14/87 (16%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDI---QVKWLK---------KGKEI 346
S + + F+ K T+ D TF ++ + +KW K GK +
Sbjct: 2 SSGSSGILFIEKPQGGTVKVG-EDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 347 KESARHIITSRGTQRKLVIKRVTQDDE 373
+ SR ++ I + +
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFA 87
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 72.8 bits (179), Expect = 9e-16
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESA-RHIITSRGTQRK 362
+ F KL V VEL+ D +VKWLK G+EI+ S ++I S G +R
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 363 LVIKRVTQDDETDIGVLALNVKSVSKL 389
L I + + D+ + K ++L
Sbjct: 74 LTISQCSLADDAAYQCVVGGEKCSTEL 100
Score = 72.8 bits (179), Expect = 1e-15
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 143 EAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVA 197
++ Q+ L+ + + + L ++ ++KW K+ I+
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
T+ CS + + Y C G + S L V+
Sbjct: 73 TLTISQCSLADDAAYQC----VVGGEKCSTELFVK 103
Score = 67.8 bits (166), Expect = 5e-14
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 661 ATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 719
H + ++ F ++ E V + IRL ++ A + W +N + + S K
Sbjct: 4 HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSK 62
Query: 720 REIF-DGENIILELKEADSETDAGDYKVVATNELGSAT 756
G L + + D Y+ V E S
Sbjct: 63 YIFESIGAKRTLTISQCSLA-DDAAYQCVVGGEKCSTE 99
Score = 50.8 bits (122), Expect = 4e-08
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
E+ W+KNG EI S + IF T+ I AD + Y ST L
Sbjct: 43 HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTEL 100
Score = 38.5 bits (90), Expect = 9e-04
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
K+ I+ T+ CS + + Y C E + E
Sbjct: 50 LKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 77.0 bits (189), Expect = 1e-15
Identities = 40/237 (16%), Positives = 66/237 (27%), Gaps = 39/237 (16%)
Query: 5 SATLTI-VKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRS-----DS 58
SA ++ V ED+ T ++ VT+ S P P ++ +
Sbjct: 59 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP----APNVILTKPEVSEGT 114
Query: 59 SVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
VT+ H + + T + A
Sbjct: 115 EVTVKCE-----AHPRAKVT------LNGVPAQPLGPRAQLLLKATPEDNGRSFSCS-AT 162
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK--DSVAGFQSSVTLECVVSGVPTPDI 176
+ G + TR + V P + E + S T C G P P++
Sbjct: 163 LEVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
K KD + + V + EG Y C+A + G T+ V
Sbjct: 218 KCLKDGTFP----------LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 67.8 bits (165), Expect = 1e-12
Identities = 35/288 (12%), Positives = 61/288 (21%), Gaps = 54/288 (18%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVE-VKYFGFPRPE--ISWMKNGAEITDSKACRIF 558
P P + + L V +Q V FP E + + +
Sbjct: 3 PATPPQLVS------PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT-YGN 55
Query: 559 IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQ--------QEKNS 610
+ T T S ++ + + E
Sbjct: 56 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE 115
Query: 611 LKFTKVATLDPS-------------TLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
+ A Q ++ + + F A V +
Sbjct: 116 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 175
Query: 658 VALATHATLGSPGQAPLFIERF--EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS 715
L P ER T E M + +P P + ++ L
Sbjct: 176 RELRVLY-------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228
Query: 716 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + + G Y A + G T V V
Sbjct: 229 IGESVTV--------------TRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 54.7 bits (131), Expect = 3e-08
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 60/216 (27%)
Query: 428 VNCSESSEGRYTCKATNEAGTAETR---TMWPGLPLSIV--------------------- 463
V + R TC + ET T++ +++
Sbjct: 66 VTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR 125
Query: 464 VSLRKADTRVKPPMKRVLQKLAV-------------------PFSYKTRTTNLQIQSPPQ 504
+ +P R L +K +T L++ P+
Sbjct: 126 AKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
+ SQ + +G P PE+ +K+G
Sbjct: 186 LDER----DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG-------------TFPLP 228
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V R TY A + G + ++++ VL
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 47.4 bits (112), Expect = 7e-06
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNITYENNVAR 198
A P + P + + T+ C + G+ + D + +TY N+
Sbjct: 4 ATPPQLVSP-RVLEVD--TQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFS 59
Query: 199 FTV---VNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V + R TC + ET T+ +
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 96
Score = 33.9 bits (77), Expect = 0.18
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 13/107 (12%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P + V E + + K +A P + L + +
Sbjct: 98 FPAPNVILTKPEVSEGTEVTV--KCEAHPRAKVTLNGVPAQPLGPRAQLLL--------- 146
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
+A E + + AT E+ T ++ + P ++ D
Sbjct: 147 --KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDC 191
Score = 28.9 bits (64), Expect = 6.3
Identities = 5/70 (7%), Positives = 13/70 (18%), Gaps = 2/70 (2%)
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755
+ + ++ L + + + D S
Sbjct: 30 LFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE--GTQRLTCAVILGNQSQ 87
Query: 756 THGARVTVDV 765
VT+
Sbjct: 88 ETLQTVTIYS 97
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 75.8 bits (186), Expect = 1e-15
Identities = 23/130 (17%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDI 176
G + + V P P S + L C G P +
Sbjct: 84 VSEEGGQNYGEVSIH-LTVLVP-----PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSE-----------GRYTCKATNEAGTAET 225
W+KD + + + +S + G Y C+A N GTA
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 197
Query: 226 SCTLLVQGKE 235
S + E
Sbjct: 198 SEAAHMDAVE 207
Score = 65.8 bits (160), Expect = 3e-12
Identities = 36/245 (14%), Positives = 57/245 (23%), Gaps = 73/245 (29%)
Query: 531 KYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590
Y GF P + W T I + +S
Sbjct: 24 TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-------------------- 63
Query: 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
+ + F+ V D +YT G
Sbjct: 64 -----------------SSGITFSSVTRKD--NGEYTCM-------------VSEEGGQN 91
Query: 651 P-EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFR 708
E + L L P +V L SP WF+
Sbjct: 92 YGEVSIHLTVLV----------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK 141
Query: 709 NNKPLLSSPKK--------REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760
+ +L++ K D ++ L + D+G+Y A N G+A
Sbjct: 142 DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFDSGEYYCQAQNGYGTAMRSEA 200
Query: 761 VTVDV 765
+D
Sbjct: 201 AHMDA 205
Score = 65.4 bits (159), Expect = 4e-12
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD----SLIKGRNITYENNVARFT 200
+ D S+ L C SG +P ++W +L+ + R T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 201 VVNCS-------ESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ G YTC + E G ++ +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
Score = 55.4 bits (133), Expect = 9e-09
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 55/194 (28%)
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472
+T+ ++ F+ V + G YTC + E G
Sbjct: 57 ADRVTFSSSGITFSSV--TRKDNGEYTCMVSEEGGQNYGEV------------------- 95
Query: 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532
+ +L + PP +P I + S R + E
Sbjct: 96 ---------------------SIHLTVLVPPSKPTISVPSSVTIGNRAVLTCS---EHD- 130
Query: 533 FGFPRPEISWMKNGAEITDS--------KACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
G P E SW K+G + + ID ++ + V D+ Y A
Sbjct: 131 -GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Query: 585 NAAGSTSLDLSLQV 598
N G+ + +
Sbjct: 190 NGYGTAMRSEAAHM 203
Score = 49.2 bits (117), Expect = 1e-06
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 15/111 (13%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN----------NKPLLSSPKKREI 722
+ V E +I+L +P + W N + + R
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
F + + D G+Y + + E G + + V PS
Sbjct: 62 FSSSG--ITFSSV-TRKDNGEYTCMVSEEGGQNYGEVSIHLTVL--VPPSK 107
Score = 32.6 bits (74), Expect = 0.35
Identities = 28/149 (18%), Positives = 43/149 (28%), Gaps = 16/149 (10%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTL--LSAPGAPDTPEIVG-RSDSSV 60
S+ +T KD G+YT +S GQ + L L P P +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122
Query: 61 TLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNK----IETTSTTYEVTKLTTKH 110
L DG P G + + D + + I+ S +T
Sbjct: 123 VLTCSEH--DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 180
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
+ A N GT S ++
Sbjct: 181 SGEYYCQAQNGYGTAMRS-EAAHMDAVEL 208
Score = 31.9 bits (72), Expect = 0.64
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
++ S L D G+Y N G A + + +
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 72.0 bits (177), Expect = 1e-15
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTV 201
I S++ L+CV G P P +W+K+ +T+E + V
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN-----ELPLTHETK-KLYMV 54
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+G Y C N+ + ++ ++
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 58.1 bits (141), Expect = 8e-11
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 11/97 (11%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G + + T+ L SP P WF+N PL KK +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------L 51
Query: 730 LELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765
+ D E G Y N+ S + + +D
Sbjct: 52 YMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDE 87
Score = 52.3 bits (126), Expect = 9e-09
Identities = 21/94 (22%), Positives = 26/94 (27%), Gaps = 21/94 (22%)
Query: 497 LQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR 556
LQI P SQ+L S ++ G P P W KN +T
Sbjct: 4 LQICVEPT------------SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT------ 45
Query: 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590
E + V TY N S
Sbjct: 46 ---HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
Score = 33.8 bits (78), Expect = 0.026
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+T+E + V +G Y C N+ + +++
Sbjct: 41 ELPLTHETK-KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80
Score = 32.7 bits (75), Expect = 0.087
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 313 PSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQD 371
P+ + Q + SP +W K + + T++ ++ V +
Sbjct: 10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLYMVPYVDLE 60
Query: 372 DE 373
+
Sbjct: 61 HQ 62
Score = 26.9 bits (60), Expect = 7.1
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG 45
E + + + G Y + N + ++
Sbjct: 46 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 71.8 bits (176), Expect = 2e-15
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 144 APVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
V E + + VT C S P + W + + N + T+
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--LTIR 67
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
N S G Y C +N + + TL VQ
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 61.0 bits (148), Expect = 1e-11
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 664 ATLGSPGQAPLFIERF-EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKRE 721
A L +P + + ++V+ + + K+ SPA ++VW R + L P +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSRAM 58
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
F+G IL ++ DAG Y +N A + V V
Sbjct: 59 DFNG---ILTIRNVQPS-DAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 50.2 bits (120), Expect = 5e-08
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P + W + S+A + + I +V +D TY T +N
Sbjct: 37 KSPAYTLVWTRLHNGKLPSRA-----MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT 91
Query: 594 LSLQV 598
+L V
Sbjct: 92 ATLHV 96
Score = 34.8 bits (80), Expect = 0.018
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+ + N + T+ N S G Y C +N +
Sbjct: 46 TRLHNGKLPSRAMDFNGI--LTIRNVQPSDAGTYVCTGSNMFAMDQGTA 92
Score = 29.0 bits (65), Expect = 1.9
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ LTI + D G Y + SN T +
Sbjct: 60 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 72.2 bits (177), Expect = 2e-15
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDS 183
G + + + V P P+I + A ++C + P PD I W ++
Sbjct: 1 GSSGSSGT-LTVNGP-----PIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53
Query: 184 LI----KGR-----NITYENNVARFTVVNCSES-SEGRYTCKATNEAGTAETSCTLLVQG 233
++ GR T E ++ T+ N + + Y C A N G+ L QG
Sbjct: 54 VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Query: 234 KEI 236
E+
Sbjct: 114 SEM 116
Score = 65.3 bits (159), Expect = 5e-13
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 7/109 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKR------EIF 723
P I + + ++ ++++P P I W L S R
Sbjct: 12 NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
+G L + Y A N GS T R+ ++ PS
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120
Score = 55.7 bits (134), Expect = 1e-09
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEIT 550
+ L + PP I S+ ++Q + +++ P P+ I+W +
Sbjct: 4 GSSGTLTVNGPPI---I----SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56
Query: 551 DSKACRIFIDEET------STIAIYSVVRADTST-YTVTATNAAGSTSLDLSLQVLG 600
+ R ++ + ST+ I ++VRAD T Y TA N+ GS + + L+ G
Sbjct: 57 SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Score = 30.2 bits (68), Expect = 0.85
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 2 EEDSATLTIVKFEDKDLGD-YTISLSNALGQASATTKVTLLSAP 44
E +TLTI D Y + N+ G + ++ +
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 30.2 bits (68), Expect = 0.94
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 436 GRYTCKATNEAGTAET 451
Y C A N G+
Sbjct: 90 TIYNCTAWNSFGSDTE 105
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 71.8 bits (176), Expect = 2e-15
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-------KGRNITYENN- 195
P I E D + TL C G PTP I+WYK + + + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 196 --VARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQG 233
R S EG Y C A N G A + +L V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 67.5 bits (165), Expect = 9e-14
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
+L P +E + V + L K + P P+I W++ + + +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 724 -----DGENIILELKEA-DSETDAGDYKVVATNELGSA-THGARVTVDV 765
G L + S D G Y VA N LG A +H A + V
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 46.3 bits (110), Expect = 2e-06
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 534 GFPRPEISWMKNGAEI---TDSKACRIFIDEETS----TIAIYSVVRADTSTYTVTATNA 586
G P P I W K G + D + S I R D Y A N
Sbjct: 35 GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94
Query: 587 AGS-TSLDLSLQVLG 600
G S D SL+V
Sbjct: 95 LGEAVSHDASLEVAA 109
Score = 35.2 bits (81), Expect = 0.017
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 407 DDSLIKGRNITYENN---VARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
D + + + R S EG Y C A N G A +
Sbjct: 53 DKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
Score = 28.2 bits (63), Expect = 4.6
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKES-----ARHIITSRGT 359
+ + + AT + E P ++W K G+ ++ + ++ G+
Sbjct: 11 RIVEHPSDLIVSKG-EPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 360 QRKLVIKRV--TQDDETDIGV 378
L R+ + D GV
Sbjct: 69 ---LFFLRIVHGRKSRPDEGV 86
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 75.9 bits (186), Expect = 6e-15
Identities = 33/249 (13%), Positives = 68/249 (27%), Gaps = 35/249 (14%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSN-ALGQASATTKVTLLSAPGAPDTPE------IVG 54
T+ + + E +D G Y + G + +T+++ P G
Sbjct: 88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKG 147
Query: 55 RSDSSVTL-----HWRPP-----QDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
+ D + + +PP + + + N T + Y +
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN--------PNGTVTVISRYRLV 199
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTL 164
H+ + + + V+ V E + + V L
Sbjct: 200 PSREAHQQSLACIVNYHMDRFKE---SLTLNVQYE----PEVTIEGFDGNWYLQRMDVKL 252
Query: 165 ECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
C P + W + + + + + S G Y C+ATN GT
Sbjct: 253 TCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPI--NYSLAGTYICEATNPIGTR 310
Query: 224 ETSCTLLVQ 232
+ +
Sbjct: 311 SGQVEVNIT 319
Score = 52.1 bits (124), Expect = 4e-07
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIILE 731
+ IE F+ ++ ++L K A+P + W N L + +N L
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG------VEAQNRTLF 286
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
K + + AG Y ATN +G+ + V +
Sbjct: 287 FKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318
Score = 46.7 bits (110), Expect = 2e-05
Identities = 27/202 (13%), Positives = 51/202 (25%), Gaps = 53/202 (26%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
W K + + ++R+ +V E+ + C +
Sbjct: 170 WETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK-------- 221
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
+ L +Q P+ I+ D N Q
Sbjct: 222 ----------------------------------ESLTLNVQYEPE-VTIEGFDGNWYLQ 246
Query: 519 RLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
R+ VK K + P E W + + + + +
Sbjct: 247 RMDVKLTCKAD----ANPPATEYHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAG 297
Query: 578 TYTVTATNAAGSTSLDLSLQVL 599
TY ATN G+ S + + +
Sbjct: 298 TYICEATNPIGTRSGQVEVNIT 319
Score = 45.1 bits (106), Expect = 6e-05
Identities = 16/115 (13%), Positives = 26/115 (22%), Gaps = 2/115 (1%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
P + NL + + P + K G P +SW
Sbjct: 115 PTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174
Query: 547 AEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ + R T S + A + L+L V
Sbjct: 175 KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229
Score = 42.8 bits (100), Expect = 3e-04
Identities = 16/135 (11%), Positives = 31/135 (22%), Gaps = 9/135 (6%)
Query: 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI 690
L D+ Y + E+ L +A QA L + ++ +
Sbjct: 101 LEDEGVYICEF--ATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAK-----KGQDDKVL 153
Query: 691 RLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK-EADSETDAGDYKVVA 748
P + W K + R +I + E +
Sbjct: 154 VATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 213
Query: 749 TNELGSATHGARVTV 763
+ + V
Sbjct: 214 NYHMDRFKESLTLNV 228
Score = 42.0 bits (98), Expect = 5e-04
Identities = 41/347 (11%), Positives = 84/347 (24%), Gaps = 84/347 (24%)
Query: 142 AEAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPD----IKWYKDDSLIKGRNITYENNV 196
P + DS+ GF + V L C + + W K + K Y ++
Sbjct: 11 GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIK 256
+ R + T T + +
Sbjct: 71 GV----SVLAPYRERVEFL-----RPSFTDGT------------------------IRLS 97
Query: 257 RVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVT 316
R+ +DE GV + ++ + + W +++ + +
Sbjct: 98 RLELEDE---GVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV 154
Query: 317 LVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQR---KLVIKRVTQDDE 373
P V W + K E + I GT + + + +
Sbjct: 155 ATC-------TSANGKPPSVVSWETRLKGEAEY-QEIRNPNGTVTVISRYRLVPSREAHQ 206
Query: 374 TDIGVLALN-VKSVSKLKWLD----------FGSGGWWFESK------------------ 404
+ + + + L+ G W+ +
Sbjct: 207 QSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYH 266
Query: 405 -YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+ + + + + S G Y C+ATN GT
Sbjct: 267 WTTLNGSLPKGVEAQNRTLFFKGPI--NYSLAGTYICEATNPIGTRS 311
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 76.1 bits (186), Expect = 7e-15
Identities = 32/259 (12%), Positives = 67/259 (25%), Gaps = 27/259 (10%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP-----EIVGR 55
+ ++ L D G+YT L N + + ++ ++P +
Sbjct: 74 ISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYI 133
Query: 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHE--YM 113
+ S V + + +N + + Y
Sbjct: 134 EYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYT 193
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV--AGFQSSVTLECVV--- 168
V T + VV +P +A PVI P V + + C V
Sbjct: 194 CVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFS 253
Query: 169 -SGVPTPDIKWYKDDSLI----------KGRNITYENN---VARFTVVNCSESSEGR-YT 213
++ W D + + + + ++ + R Y
Sbjct: 254 FLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYV 313
Query: 214 CKATNEAGTAETSCTLLVQ 232
C A + G + + +
Sbjct: 314 CHARSAKGEVAKAAKVKQK 332
Score = 65.7 bits (159), Expect = 2e-11
Identities = 46/380 (12%), Positives = 88/380 (23%), Gaps = 116/380 (30%)
Query: 400 WFESKYKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
W+ ++ D I+ E +V F + G YTC N ++
Sbjct: 52 WYWTRQDRDLEEPINFRLPENRISKEKDVLWFR--PTLLNDTGNYTCMLRNTTYCSKVA- 108
Query: 454 MWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513
PL +V ++ +K P+ ++ +I P
Sbjct: 109 ----FPLEVVQKDSCFNSPMKLPVHKLY----------IEYGIQRITCPN---------- 144
Query: 514 NLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR 573
V+ + +P I+W +I + + E ++ +
Sbjct: 145 --------------VDGYFPSSVKPTITWYMGCYKIQNFN----NVIPEGMNLSFLIALI 186
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633
++ YT T + L+ + + S K + E
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLT-----RTLTVKVVGSPKNAVPPVIHSPNDHVVYE---- 237
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM 693
G E +
Sbjct: 238 -------------KEPGEELL-----IPCTVYFSFLMD---------------------- 257
Query: 694 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI----------ILELKEADSETDAGD 743
+ W + K I + + IL +K+ SE
Sbjct: 258 ------SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRS 311
Query: 744 YKVVATNELGSATHGARVTV 763
Y A + G A+V
Sbjct: 312 YVCHARSAKGEVAKAAKVKQ 331
Score = 56.4 bits (135), Expect = 1e-08
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 8/138 (5%)
Query: 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT---LECVVSGVPTPDIKWYK 180
T + VV+ +P+ K + +T ++ P I WY
Sbjct: 102 TYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161
Query: 181 DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT----NEAGTAETSCTLLVQGKEI 236
I+ N + + S+ G YTC T + T+ V G
Sbjct: 162 GCYKIQNFNNVIPEG-MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK 220
Query: 237 KESARHIITARGTQRKLV 254
I +
Sbjct: 221 NAVPPVIHSPNDHVVYEK 238
Score = 50.6 bits (120), Expect = 1e-06
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-ITYENNVARFTV------ 201
EP + F+ + + + WY I + R +
Sbjct: 23 EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLW 82
Query: 202 -VNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ G YTC N ++ + L V K+
Sbjct: 83 FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD 117
Score = 50.6 bits (120), Expect = 1e-06
Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 26/198 (13%)
Query: 605 QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664
+EK+ L F L D Y N+ + L + +
Sbjct: 75 SKEKDVLWFRPT-------------LLNDTGNYTCM--LRNTTY-CSKVAFPLEVVQKDS 118
Query: 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
SP + P+ E + + +S P+I W+ + I +
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRIT-CPNVDGYFPSSVKPTITWYMGCYKI--QNFNNVIPE 175
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVH 784
G N L A + G+Y V T T T+ V+ VG P + +H
Sbjct: 176 GMN--LSFLIALIS-NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPV----IH 228
Query: 785 YLAQSTEVDVTSTDEFHI 802
+ +E I
Sbjct: 229 SPNDHVVYEKEPGEELLI 246
Score = 42.2 bits (98), Expect = 5e-04
Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 6/103 (5%)
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-----LELKEADSETD 740
+ ++ S +++W+ + I L + D
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN-D 90
Query: 741 AGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHV 783
G+Y + N + + V + S + + ++
Sbjct: 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYI 133
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 69.4 bits (170), Expect = 2e-14
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 136 VKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITY 192
+ V A V L C + P +++W KD + +
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVVESPALLLQK 63
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
E+ V R + G Y C E S T+ V ++
Sbjct: 64 EDTVRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPPVR 104
Score = 67.1 bits (164), Expect = 1e-13
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
+ + S V V EL P +V+W K G+E+ ES ++ T R+L
Sbjct: 12 SWIVYPSGKVYVAAVRL-ERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70
Query: 364 VIKRVTQDDETDIGVLALNVKSVSKL 389
V+ V +D + + + +
Sbjct: 71 VLPAVQLEDSGEYLCEIDDESASFTV 96
Score = 61.3 bits (149), Expect = 1e-11
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
++ ++ + L ++ P + W ++ + ++ SP
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK 63
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSAT 756
+ L L D+G+Y +E S T
Sbjct: 64 EDTVRRLVLPAV-QLEDSGEYLCEIDDESASFT 95
Score = 54.8 bits (132), Expect = 2e-09
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P E+ W K+G E+ +S A + ++ + + +V D+ Y + + S ++
Sbjct: 38 CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFTV 96
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
KD + + E+ V R + G Y C+ +E+ +
Sbjct: 47 TKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 69.3 bits (170), Expect = 2e-14
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGRN---ITYENNVA 197
+ I + LK S + ECV+S + W + + T +
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY 65
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
V + S G A L+V+ +
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTSKAS----LIVRER 98
Score = 69.0 bits (169), Expect = 2e-14
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS--SPDIQVKWLKKGKEIKESARHIITSR 357
S S+ V +L ++ V +F+ LS S W GK + S+R T +
Sbjct: 3 SGSSGHVGITKRLKTME-VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ 61
Query: 358 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390
G + LV++ D ++ + S + L
Sbjct: 62 GRKYILVVREAAPSDAGEVVFSVRGLTSKASLI 94
Score = 64.7 bits (158), Expect = 6e-13
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIF 723
GS G + +R + V E + + S + +W K + SS + +
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR 60
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSAT 756
G IL ++EA DAG+ A+
Sbjct: 61 QGRKYILVVREAAPS-DAGEVVFSVRGLTSKAS 92
Score = 52.8 bits (127), Expect = 8e-09
Identities = 6/59 (10%), Positives = 12/59 (20%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
W G + S + + + +D + SL
Sbjct: 35 ESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKASL 93
Score = 37.0 bits (86), Expect = 0.003
Identities = 5/49 (10%), Positives = 9/49 (18%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+ + T + V + S G A
Sbjct: 44 TVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 69.0 bits (169), Expect = 2e-14
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGD-ATFQVELSSPDIQVKWLKKGKEIKESARHIITSR 357
S S+ V LS V+L + ELS D W K G++++ES ++
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMD 61
Query: 358 GTQRKLVIKRVTQDDE 373
G + +L++ D
Sbjct: 62 GRKHRLILPEAKVQDS 77
Score = 66.3 bits (162), Expect = 2e-13
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 11/97 (11%)
Query: 142 AEAPVI---QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENN 195
+ PV + V L C +S WYKD ++ + +
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGR 63
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
R + G + C + VQ
Sbjct: 64 KHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQ 96
Score = 61.3 bits (149), Expect = 8e-12
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 668 SPGQAPLFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
S P+ I ++K T + L ++ + W+++ + + S D
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMD 61
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
G L L EA + D+G+++ VTV
Sbjct: 62 GRKHRLILPEAKVQ-DSGEFECRTEGVSAFFG----VTVQD 97
Score = 50.9 bits (122), Expect = 4e-08
Identities = 6/57 (10%), Positives = 20/57 (35%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+W K+G ++ +S+ + +D + + D+ + + +
Sbjct: 37 VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFGV 93
Score = 36.6 bits (85), Expect = 0.004
Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
YKD ++ + + R + G + C+ +
Sbjct: 44 YKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG 92
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 68.3 bits (167), Expect = 2e-14
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVA 197
P A+ + ++ + + L C + I W +D L++
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE- 61
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
V + + G Y C ++ +G+ T ++ V
Sbjct: 62 -VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 61.4 bits (149), Expect = 7e-12
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
TL Q E V ++L +++ SI W R+ L+ S + R +
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE 60
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+E++++ D+G Y V ++ GS T V V
Sbjct: 61 ----EVEVRDSIPA-DSGLYACVTSSPSGSDTTYFSVNV 94
Score = 51.7 bits (124), Expect = 1e-08
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
I+W+++G ++ +S RI + + + AD+ Y ++ +GS + S
Sbjct: 36 DVQSINWLRDGVQLVESNRTRI----TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFS 91
Query: 596 LQV 598
+ V
Sbjct: 92 VNV 94
Score = 33.6 bits (77), Expect = 0.038
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 405 YKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
+D L++ V + + G Y C ++ +G+ T
Sbjct: 43 LRDGVQLVESNRTRITGEE--VEVRDSIPADSGLYACVTSSPSGSDTTYFS 91
Score = 29.0 bits (65), Expect = 1.5
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ + D G Y S+ G + V
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 73.3 bits (180), Expect = 2e-14
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 21 YTISL----SNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRP-PQDDGHSPV 75
Y I++ ++ G + + P T + L W P D + +
Sbjct: 170 YLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFI 229
Query: 76 TGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
Y + ++++ T Y ++ LT+ YM R+AA G T
Sbjct: 230 RNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285
Score = 71.0 bits (174), Expect = 1e-13
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 5/141 (3%)
Query: 20 DYTISLS--NALG--QASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPV 75
Y +L+ N +G A+ T P D+ + + W P++ +
Sbjct: 73 RYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYI 132
Query: 76 TGYVLESHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+ + S W + + T TY L Y+ V V A G G Y+
Sbjct: 133 LEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYL 192
Query: 135 VVKAPVDAEAPVIQEPLKDSV 155
P ++ K+
Sbjct: 193 KQAPPSKGPTVRTKKVGKNEA 213
Score = 64.8 bits (158), Expect = 2e-11
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 9/117 (7%)
Query: 44 PGAPDTPEIV----GRSDSSVTLHWRP-PQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
AP + + +V L W+ P + + + Y + +
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS--HLQNYTVNA 62
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
T V T Y+ + N +G A+ T + P + +
Sbjct: 63 TKLTVN--LTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNML 117
Score = 48.3 bits (115), Expect = 5e-06
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ Y I + + +D S +YT+ +L + Y ++ A G
Sbjct: 229 IRNYTIFYRTIIGNETAV--NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD 280
Score = 40.2 bits (94), Expect = 0.002
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 587 AGSTSLDLS-----LQVLGYIIQ-----QQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
L + V YI++ + + + Y NL +
Sbjct: 112 PKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQED--GTVHRTYLRGNLAESKC 169
Query: 637 YYFQVFAENSVGLGPEATTE 656
Y V + G G + +
Sbjct: 170 YLITVTPVYADGPGSPESIK 189
Score = 35.6 bits (82), Expect = 0.047
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 16/86 (18%)
Query: 579 YTVTATNAAGSTSLDLS----------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628
Y + ++ G ++ L ++L Y + S +
Sbjct: 12 YKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVN------ATKL 65
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEAT 654
Y + N VG A
Sbjct: 66 TVNLTNDRYLATLTVRNLVGKSDAAV 91
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 68.6 bits (168), Expect = 3e-14
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETT 97
+ S P V + S+TL W P + + + Y + + + +
Sbjct: 3 SGSSGPSTVPIMHQVSATMRSITLSWPQP-EQPNGIILDYEIRYYEKEHNEFNSSMARSQ 61
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ T + L Y+ +V A G G S
Sbjct: 62 TNTARIDGLRPGMVYVVQVRARTVAGYGKFS 92
Score = 42.8 bits (101), Expect = 3e-05
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L Y I+ EK + T ++ LR Y QV A G G
Sbjct: 37 IILDYEIRYYEKEH-NEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGK 90
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 68.2 bits (167), Expect = 3e-14
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFT 200
+ ++ + + L C + I W +D L +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE--VE 57
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V + + G Y C ++ +G+ T ++ V
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 66.6 bits (163), Expect = 1e-13
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G + E V ++L +++ SI W R+ L S R GE
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN--RTRITGEE-- 55
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+E++++ D+G Y V ++ GS T V V
Sbjct: 56 VEVQDSVPA-DSGLYACVTSSPSGSDTTYFSVNV 88
Score = 52.8 bits (127), Expect = 8e-09
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
I+W+++G ++ +S RI + + V AD+ Y ++ +GS + S+
Sbjct: 32 QSINWLRDGVQLAESNRTRI----TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
Query: 598 V 598
V
Sbjct: 88 V 88
Score = 37.8 bits (88), Expect = 0.001
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 312 LPSVTLVP-----HLGD-ATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
S + H GD + L + WL+ G ++ ES R I T ++ +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRI----TGEEVEV 58
Query: 366 KRVTQDD 372
+ D
Sbjct: 59 QDSVPAD 65
Score = 32.7 bits (75), Expect = 0.091
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 405 YKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
+D L + V + + G Y C ++ +G+ T
Sbjct: 37 LRDGVQLAESNRTRITGEE--VEVQDSVPADSGLYACVTSSPSGSDTTYFS 85
Score = 32.0 bits (73), Expect = 0.15
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
+ + D G Y S+ G + V + A
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 74.1 bits (182), Expect = 3e-14
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
+ S T++ V +DSS+ L W P S + GY + + +
Sbjct: 82 DKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGI 138
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + ++++ Y VT L +Y V + G + T+ V P D
Sbjct: 139 PIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTD 192
Score = 72.5 bits (178), Expect = 1e-13
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
DY IS+ G+ SA T +T +A P ++ + W PP +T
Sbjct: 162 DYDISVITLINGGE-SAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTN 217
Query: 78 YVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVV 135
+++ +E + I + +T L EY+ V++V +
Sbjct: 218 FLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG 277
Query: 136 VKAPVDAEAPVI 147
+ +P + I
Sbjct: 278 LDSPTGIDFSDI 289
Score = 70.6 bits (173), Expect = 4e-13
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+S + S + + +P + + +S T+HW P + +TGY
Sbjct: 254 YVVSVSSVYEQHE-STPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGY 308
Query: 79 VLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ +++ + + +T LT EY+ + A+N P
Sbjct: 309 RIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 363
Score = 52.5 bits (126), Expect = 3e-07
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ ++ + S + + GY I+ ++ + + S T+ NL +
Sbjct: 284 IDFSDI-TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGT 342
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHAT 665
EY + A N P + ++ H
Sbjct: 343 EYVVSIVALNGREESPLLIGQQSTVSAHHH 372
Score = 52.5 bits (126), Expect = 3e-07
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ TN G ++ ++ + + ++++ + + ++ PS + NL
Sbjct: 193 LRFTNI-GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 251
Query: 635 SEYYFQVFAENSVGLGPEATT 655
+EY V +
Sbjct: 252 TEYVVSVSSVYEQHESTPLRG 272
Score = 52.1 bits (125), Expect = 4e-07
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 44 PGAPDTPEIVGRSDSS-VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK---IETTST 99
P + D+ +T+ W +TGY + + + + + +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L+ EY V V +T
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 91
Score = 50.6 bits (121), Expect = 1e-06
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 586 AAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
+S+ L ++GY I +D S YTV L +Y
Sbjct: 106 DITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDI 165
Query: 640 QVFAENSVGLGPEATT 655
V + G T
Sbjct: 166 SVITLINGGESAPTTL 181
Score = 41.7 bits (98), Expect = 7e-04
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKF-TKVATLDPSTLQYTVENLRD 633
+ + L +S + GY I N + + + T +NL
Sbjct: 9 LHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP 68
Query: 634 KSEYYFQVFAENSVGLGPEATT 655
EY V+ +
Sbjct: 69 GLEYNVSVYTVKDDKESVPISD 90
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 68.7 bits (168), Expect = 3e-14
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWR-PPQDDGHSPVTGYVLE--SHDKDEFMVWNK--IETTS 98
P +++++ L W P + ++P+ G+ + D D + K +E
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
+ ++ L + Y ++ N G S+ +
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSSG 114
Score = 42.9 bits (101), Expect = 3e-05
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ G+ I + +S + K ++ +++ +L+ ++ Y ++ N G
Sbjct: 40 PIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESE 96
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 72.8 bits (178), Expect = 4e-14
Identities = 30/249 (12%), Positives = 65/249 (26%), Gaps = 32/249 (12%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLL--------SAPGAPDTPEIVG 54
S+ LT+ D G+Y + +++ G + K + P + I
Sbjct: 48 TFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL 107
Query: 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
+ +T+ R P L D + + + Y+
Sbjct: 108 TEITEITIPCRV-----TDPQLVVTLHEKKGDVALPV----PYDHQRGFSGIFEDRSYIC 158
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
+ + Y + + + +V ++TL C+V G
Sbjct: 159 K--TTIGDREVDSDAYYVYRLQVSS-----INVSVNAVQTVVRQGENITLMCIVIGNEVV 211
Query: 175 DIKWYKDDSLIKGRNITYENNVARF--------TVVNCSESSEGRYTCKATNEAGTAETS 226
+ +W + + + + G YTC T +
Sbjct: 212 NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE 271
Query: 227 CTLLVQGKE 235
+ + E
Sbjct: 272 KAINITVVE 280
Score = 67.0 bits (163), Expect = 3e-12
Identities = 33/265 (12%), Positives = 65/265 (24%), Gaps = 49/265 (18%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG---STSLDL 594
+ W + E + + +S + + ++ DT Y T ++ G L
Sbjct: 26 APVVWERMSQEP-PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRL 84
Query: 595 SLQVLGY------------IIQQQEKNSLKFT-KVATLDPS----------------TLQ 625
+ V I E + +V Q
Sbjct: 85 YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQ 144
Query: 626 YTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVK 685
+ + Y + + L + + V+
Sbjct: 145 RGFSGIFEDRSYICK--TTIGDREVDSDAYYVYRL--------QVSSINVSVNAVQTVVR 194
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETD 740
+ I LM V + + W K + F + IL + A+ E D
Sbjct: 195 QGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELE-D 253
Query: 741 AGDYKVVATNELGSATHGARVTVDV 765
+G Y T + + + V
Sbjct: 254 SGTYTCNVTESVNDHQDEKAINITV 278
Score = 53.2 bits (127), Expect = 1e-07
Identities = 33/256 (12%), Positives = 68/256 (26%), Gaps = 65/256 (25%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW--- 455
W S+ + K ++ T+ + T+ N + G Y C + G
Sbjct: 30 WERMSQEPPQEMAKAQDGTF---SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
Query: 456 ----PGLPL---------------------------SIVVSLRKADTRVKPPMKRVLQKL 484
P + +VV+L + V P+ Q+
Sbjct: 87 FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRG 146
Query: 485 AVPFS----YKTRTTN------------LQIQSPPQQPAIKLVDSNLKS-QRLSVKSQWK 527
Y +TT ++Q ++ V + ++ + +++
Sbjct: 147 FSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITL----- 201
Query: 528 VEVKYFGFPRPEISWMKNGAEI-----TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
G W E + S + I S D+ TYT
Sbjct: 202 -MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCN 260
Query: 583 ATNAAGSTSLDLSLQV 598
T + + ++ +
Sbjct: 261 VTESVNDHQDEKAINI 276
Score = 50.1 bits (119), Expect = 1e-06
Identities = 31/259 (11%), Positives = 67/259 (25%), Gaps = 37/259 (14%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN--VARFTVVN 203
V+ P + V S+ L C S + W + ++ + T+ N
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTN 57
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLL---VQGKE----IKESARHIITARGTQRKLVIK 256
+ G Y C + G L V ++ I +
Sbjct: 58 LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPC 117
Query: 257 RVT----------QDDETDIGVLALNVKSVSKLKW------LARWTSDLESTAWFWWFES 300
RVT + + + V + + S + + ++ +
Sbjct: 118 RVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRL 177
Query: 301 KSTPAVEFLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGT 359
+ + ++ T+V + T + + + +W KE +
Sbjct: 178 QVSSINVSVN--AVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLD 235
Query: 360 QRK-----LVIKRVTQDDE 373
L I +D
Sbjct: 236 MPYHIRSILHIPSAELEDS 254
Score = 37.8 bits (87), Expect = 0.012
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
E + T L + +VW R ++ K + + +L L +
Sbjct: 8 PELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQD-GTFSSVLTLTNL-TGL 61
Query: 740 DAGDYKVVATNELGSAT-HGARVTVDVEKVGRPSINS 775
D G+Y + G T R+ + V + +
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPN 98
Score = 30.4 bits (68), Expect = 1.9
Identities = 15/127 (11%), Positives = 31/127 (24%), Gaps = 21/127 (16%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEK---TVKEKGTIRLMAKVKAS 699
+S GL + L + P F+ E+ + E I + +V
Sbjct: 70 HNDSRGLETDERKRL-------YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TD 121
Query: 700 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759
P + + +D + + + Y T A
Sbjct: 122 PQLVVTLHEKKGDVALP----VPYDHQRGFSGI------FEDRSYICKTTIGDREVDSDA 171
Query: 760 RVTVDVE 766
++
Sbjct: 172 YYVYRLQ 178
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 67.8 bits (166), Expect = 4e-14
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEV 103
P ++ + ++ + W+PP P+ G ++ + + ++ T+ +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T L Y R+ A N P T
Sbjct: 60 TNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 55.1 bits (133), Expect = 1e-09
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 589 STSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFA 643
T+ ++ L + G ++ KN L S T+ NL + Y ++ A
Sbjct: 15 LTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVA 74
Query: 644 ENSVGLGPEATTE 656
N P +T
Sbjct: 75 RNGQQYSPPVSTT 87
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 68.4 bits (167), Expect = 5e-14
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVARFTVV-------NCSESSEGR 211
+ V G P P ++W + S++ + + A TV + + G
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 212 YTCKATNEAGTAETSCTLLVQGKEIKESARHIIT 245
YT A N G A S + + I
Sbjct: 78 YTLLAANPFGQASASIMAAFMDNPFEFNPEDPIP 111
Score = 63.0 bits (153), Expect = 4e-12
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-------NI 728
+ I V PAPS+ W N L + F +
Sbjct: 6 SVQLHTAVEMHHWCIP--FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L L + + + G+Y ++A N G A+
Sbjct: 64 CLRLNQP-THVNNGNYTLLAANPFGQASASIMAAF 97
Score = 62.7 bits (152), Expect = 5e-12
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIA-------IYSVVRADTST 578
W + G P P + W+ NG+ + ++ E + + +
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 579 YTVTATNAAGSTSLDLSLQVLG 600
YT+ A N G S + +
Sbjct: 78 YTLLAANPFGQASASIMAAFMD 99
Score = 43.8 bits (103), Expect = 2e-05
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
L + + + G+YT+ +N GQASA+ + P + + + ++S+
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSG 118
Score = 36.5 bits (84), Expect = 0.007
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRT 453
+ + + G YT A N G A
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQASASI 93
Score = 30.7 bits (69), Expect = 0.62
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQRK-------LVIKRVTQDDE 373
P ++WL G + E++ L + + T +
Sbjct: 28 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 67.8 bits (166), Expect = 6e-14
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 44 PGAPDTPEIVGRSDS--SVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTS- 98
AP ++ R +V + W+PP + + +T Y+L W +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEA-NGKITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 99 -TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
T+++ L Y FR+ A N+ G GP S + +K
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 49.3 bits (118), Expect = 2e-07
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ YI+ ++ + T+ L + + +L + YYF++ A NS G+GP
Sbjct: 40 KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGP 96
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 73.3 bits (180), Expect = 6e-14
Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 18/213 (8%)
Query: 21 YTISLSNALG-QASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYV 79
Y +S+ + S T++ A P ++ + W PP +T ++
Sbjct: 71 YNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFL 127
Query: 80 LE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
+ +E + I + +T L EY+ V++V + +
Sbjct: 128 VRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLD 187
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLE-CVVSGVPT-PDIKWYKDDSLIKGRNITYENN 195
+P + I +S T+ T I+ + + + R ++
Sbjct: 188 SPTGIDFSDITA----------NSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHS 237
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
T+ N + +E + A N +
Sbjct: 238 RNSITLTNLTPGTEYVVSIVALNGREESPLLIG 270
Score = 73.3 bits (180), Expect = 6e-14
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+ N + S + P E+V + +S+ + W P V Y
Sbjct: 252 YVVSIVALNGREE-SPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPA----VTVRYY 306
Query: 79 VLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ + + + + +T ++ L +Y V AV G PAS +
Sbjct: 307 RITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINY 366
Query: 137 K 137
+
Sbjct: 367 R 367
Score = 71.4 bits (175), Expect = 2e-13
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+S + S + + +P + + +S T+HW P+ + +TGY
Sbjct: 162 YVVSVSSVYEQHE-STPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGY 216
Query: 79 VLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ +++ + + +T LT EY+ + A+N P + V
Sbjct: 217 RIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVS 276
Query: 137 KAPVD 141
P D
Sbjct: 277 DVPRD 281
Score = 56.8 bits (137), Expect = 1e-08
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 44 PGAPDTPEIVGRSDSS-VTLHWRPPQDDGHSPVTGYVLE---SHDKDEFMVWNKIETTST 99
P + D+ +T+ W +TGY + ++ + + + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ L+ EY V V +T V P D
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTD 100
Score = 52.5 bits (126), Expect = 2e-07
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S + V Y I E + T+ S T+ L+ +Y
Sbjct: 286 AATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTIT 345
Query: 641 VFAENSVGLGPEATTELVALAT 662
V+A G P ++ +
Sbjct: 346 VYAVTGRGDSPASSKPISINYR 367
Score = 52.1 bits (125), Expect = 4e-07
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
+ S + + GY I+ ++ + + S T+ NL +EY
Sbjct: 196 DITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 255
Query: 641 VFAENSVGLGPEATT 655
+ A N P
Sbjct: 256 IVALNGREESPLLIG 270
Score = 49.1 bits (117), Expect = 3e-06
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ TN G ++ ++ + + ++++ + + ++ PS + NL
Sbjct: 101 LRFTNI-GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 159
Query: 635 SEYYFQVFAENSVGLGPEATT 655
+EY V +
Sbjct: 160 TEYVVSVSSVYEQHESTPLRG 180
Score = 43.7 bits (103), Expect = 2e-04
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKV-ATLDPSTLQYTVENLRD 633
+ + L +S + GY I N + + + T +NL
Sbjct: 8 LHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP 67
Query: 634 KSEYYFQVFAENSVGLGPEATT 655
EY V+ +
Sbjct: 68 GLEYNVSVYTVKDDKESVPISD 89
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 69.5 bits (170), Expect = 7e-14
Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 29/198 (14%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPV--------TGYVLESHDKDEFMVWNKIETTS 98
+ E G + L Q + + + E
Sbjct: 4 TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF 63
Query: 99 TTY--EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA 156
++ L T + +++V+ + G + ++ V P I S
Sbjct: 64 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD-LKIQERV--SKPKI------SWT 114
Query: 157 GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 216
+ TL C V P++ Y+D +K R + S ++ C A
Sbjct: 115 C--INTTLTCEVMNGTDPELNLYQDGKHLKLSQ--------RVITHKWTTSLSAKFKCTA 164
Query: 217 TNEAGTAETSCTLLVQGK 234
N+ + + K
Sbjct: 165 GNKVSKESSVEPVSCPEK 182
Score = 49.5 bits (118), Expect = 6e-07
Identities = 22/207 (10%), Positives = 47/207 (22%), Gaps = 69/207 (33%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCS-------ESSEGRYTCKATNEAGTAET 451
W S K + + T++ N + + Y + G
Sbjct: 35 WEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVL 94
Query: 452 RTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLV 511
+ +L+IQ +P I
Sbjct: 95 ----------------------------------------EKIFDLKIQERVSKPKISWT 114
Query: 512 DSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV 571
N L+ + PE++ ++G + S + +
Sbjct: 115 CINTT---LTCEVM--------NGTDPELNLYQDGKHLKLS-----------QRVITHKW 152
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQV 598
+ ++ + TA N S +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 43.7 bits (103), Expect = 6e-05
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745
L +V P + +++ K L S + I + + + + +K
Sbjct: 114 TCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR--------VITHKW----TTSLSAKFK 161
Query: 746 VVATNELGSATHGARVTV 763
A N++ + V+
Sbjct: 162 CTAGNKVSKESSVEPVSC 179
Score = 40.3 bits (94), Expect = 8e-04
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 697 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756
K S I FR K ++F +N L++K ++ D YKV + G
Sbjct: 37 KTSDKKKIAQFRKEKETFKEKDTYKLF--KNGTLKIKHLKTD-DQDIYKVSIYDTKGKNV 93
Query: 757 HGARVTVDV-EKVGRPSINS 775
+ + E+V +P I+
Sbjct: 94 LEKIFDLKIQERVSKPKISW 113
Score = 36.8 bits (85), Expect = 0.012
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 534 GFPRPEISWMKNGAEI----------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
+I W K + T + + + T+ I + D Y V+
Sbjct: 27 SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-NGTLKIKHLKTDDQDIYKVSI 85
Query: 584 TNAAGSTSLDLSLQV 598
+ G L+ +
Sbjct: 86 YDTKGKNVLEKIFDL 100
Score = 31.0 bits (70), Expect = 0.85
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
+ TL I + D Y +S+ + G+ L P+I + + TL
Sbjct: 64 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE-RVSKPKIS-WTCINTTLT 121
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 70.2 bits (172), Expect = 8e-14
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPP---QDDGHSPVTGYVLE-SHDKDEFMVWNKIETTST 99
P + S ++ + W + + Y + + + T+
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+Y VT L Y F V + S
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS 93
Score = 68.7 bits (168), Expect = 3e-13
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 21 YTISL--SNALGQASATTKVTLLSAPGAPDTP------EIVGRSDSSVTLHWRPPQDDGH 72
Y S+ + ++ + + P +P ++ ++W+PP + +
Sbjct: 77 YEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA-N 135
Query: 73 SPVTGYVLE--SHDKDEFMVWNK--IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+TGY++ + E W + T+++ +LT Y F++ A N+ G GP S
Sbjct: 136 GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMS 195
Query: 129 HNTRYVVVKAPVD 141
++ KA
Sbjct: 196 EAVQFRTPKAHHH 208
Score = 49.8 bits (119), Expect = 7e-07
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ GYII + + + + + L + ++ L + YYF++ A NS G+GP
Sbjct: 137 KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGP 193
Score = 47.1 bits (112), Expect = 6e-06
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 581 VTATNAAGSTSLDLS------------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628
V A+ ++ ++ Y ++ + TK + +TL Y V
Sbjct: 11 VQAS-ILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN-TKYKNANATTLSYLV 68
Query: 629 ENLRDKSEYYFQVFAENSVGLGPE 652
L+ + Y F V
Sbjct: 69 TGLKPNTLYEFSVMVTKGRRSSTW 92
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 71.5 bits (175), Expect = 8e-14
Identities = 34/237 (14%), Positives = 65/237 (27%), Gaps = 21/237 (8%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
+ + + I D G+Y S ++ + V +
Sbjct: 43 TQTSTPSYRITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPL 100
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVN 120
L +D V Y ++ K ++ + K H + + +
Sbjct: 101 ALRCHAWKDKLVYNVLYY------RNGKAF--KFFHWNSNLTILKTNISHNGTYHCSGMG 152
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA-GFQSSVTLECVVSGVPTPDIKWY 179
+ V VK APV+ + + G + VTL C +
Sbjct: 153 KHRY---TSAGISVTVKELF--PAPVLNASVTSPLLEG--NLVTLSCETKLLLQRPGLQL 205
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET---SCTLLVQG 233
+ + + N + + ++ G Y C+A E G L V G
Sbjct: 206 YFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 52.2 bits (125), Expect = 2e-07
Identities = 37/258 (14%), Positives = 62/258 (24%), Gaps = 48/258 (18%)
Query: 533 FGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
P W NG S T + I S D+ Y + S
Sbjct: 26 LHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLSGRSDP 75
Query: 592 LDLSLQVLGYIIQQ-----QEKNSLKFTKVATLDPSTLQYT-------VENLRDKSEYYF 639
+ L + ++Q E L A D + S
Sbjct: 76 IQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTI 135
Query: 640 QV-----------FAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688
T+ +++ T+ AP+ + E
Sbjct: 136 LKTNISHNGTYHCSGMGKHR----YTSAGISV----TVKELFPAPVLNASVTS-PLLEGN 186
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748
+ L + K + + + S + E IL + DS G Y A
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDS----GLYWCEA 242
Query: 749 TNELGSATHG-ARVTVDV 765
E G+ + + V
Sbjct: 243 ATEDGNVLKRSPELELQV 260
Score = 51.8 bits (124), Expect = 2e-07
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 161 SVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
+VTL C V +P +W+ + + + +Y + + S + G Y C+
Sbjct: 18 TVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSY-------RITSASVNDSGEYRCQRGLS 70
Query: 220 AGTAETSCTLL 230
+ +
Sbjct: 71 GRSDPIQLEIH 81
Score = 50.3 bits (120), Expect = 8e-07
Identities = 40/329 (12%), Positives = 79/329 (24%), Gaps = 109/329 (33%)
Query: 313 PSVTLVP-----HLGD-ATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
+TL P + T +V +W G + S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYR 51
Query: 365 IKRVTQDD------ETDIGVLALNVKSVSKLKWLDF------------------GSGG-- 398
I + +D + + + ++ WL
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL 111
Query: 399 ----WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
+ Y++ G+ + + + T++ + S G Y C +
Sbjct: 112 VYNVLY----YRN-----GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSA--- 159
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
+S+ V F ++ ++
Sbjct: 160 ----GISVTVK--------------------ELFPAPVLNASVTSPLLEGNLVTLSCETK 195
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L QR ++ + S+ + +S I + R
Sbjct: 196 LLLQRPGLQLYF--------------SFYMGSKTLRGR--------NTSSEYQILTARRE 233
Query: 575 DTSTYTVTATNAAGST---SLDLSLQVLG 600
D+ Y A G+ S +L LQVLG
Sbjct: 234 DSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 46.8 bits (111), Expect = 1e-05
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 11/106 (10%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENII 729
+ + + E + L +++++RN K
Sbjct: 81 HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSN-------- 132
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
L + + + + G Y + + G VTV E P +N+
Sbjct: 133 LTILKT-NISHNGTYHCSGMGKHRYTSAGISVTV-KELFPAPVLNA 176
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 67.1 bits (164), Expect = 8e-14
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
+ + + ++V + + L W + Y L ++DE
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM---VLEPRV 64
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+TKL Y+ RV + +G GP S
Sbjct: 65 LLTKLQPDTTYIVRVRTLTPLGPGPFS 91
Score = 39.4 bits (92), Expect = 4e-04
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 15/84 (17%)
Query: 577 STYTVTATNAAGSTSLDLSLQ---------VLGYIIQQQEKNSLKFTKVATLDPSTLQYT 627
S ++ L+L+ L Y + ++ V +
Sbjct: 12 SGLSLKLVKKE-PRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV-----LEPRVL 65
Query: 628 VENLRDKSEYYFQVFAENSVGLGP 651
+ L+ + Y +V +G GP
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLGPGP 89
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 70.2 bits (172), Expect = 8e-14
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
DY IS+ G+ S T +T +A P ++ + W PP +T
Sbjct: 89 DYDISVYTVKNGGE-STPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPS---IDLTN 144
Query: 78 YVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+++ +E + I + +T L EY+ V++V
Sbjct: 145 FLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL 197
Score = 69.5 bits (170), Expect = 1e-13
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
+S P V +DSS+ L W P S + GY + + +
Sbjct: 9 HHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNS---STIIGYRITVVAAGEGI 65
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + ++++ Y VT L +Y V V G + T+ V P D
Sbjct: 66 PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119
Score = 51.4 bits (123), Expect = 2e-07
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 589 STSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
+S+ L ++GY I +D S YTV L +Y V+
Sbjct: 36 DSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVY 95
Query: 643 AENSVGLGPEATT 655
+ G T
Sbjct: 96 TVKNGGESTPTTL 108
Score = 49.4 bits (118), Expect = 1e-06
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 588 GSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQV 641
G ++ ++ + + ++++ + + ++ PS + NL +EY V
Sbjct: 126 GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSV 185
Query: 642 FAENSVGLGPEATTE 656
+
Sbjct: 186 SSVYEQHESTPLRGR 200
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 69.9 bits (171), Expect = 9e-14
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 12/116 (10%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DI 176
T YV ++ P E +D + L C G P P D+
Sbjct: 87 VFLGHQT--FVSQPGYVGLEGL-----PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDL 139
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
W +D + +N ++C+A N G + +
Sbjct: 140 LWLQDAVPLATAPGHGPQRSLHVPGLN----KTSSFSCEAHNAKGVTTSRTATITV 191
Score = 60.3 bits (146), Expect = 1e-10
Identities = 34/232 (14%), Positives = 64/232 (27%), Gaps = 71/232 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
PE+ W+++G + + + + + + VV
Sbjct: 29 QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVS-------------------- 68
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
L+ T + L D +Y Q
Sbjct: 69 ----------------QLRITSL-------------QLSDTGQY--QCLVFLGHQ---TF 94
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKP 712
++ + P F+E E++TV L + + P P ++W ++ P
Sbjct: 95 VSQPGYVGLEG-------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP 147
Query: 713 LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 763
L ++P G L + + A N G T A +TV
Sbjct: 148 LATAPG-----HGPQRSLHV---PGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 60.3 bits (146), Expect = 2e-10
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVAR--- 198
E+P + P + + TL C + P++ W +D +++ + T
Sbjct: 2 ESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 199 ---------FTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQGK 234
+ + S G+Y C T + + ++G
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
Score = 58.4 bits (141), Expect = 8e-10
Identities = 21/176 (11%), Positives = 55/176 (31%), Gaps = 62/176 (35%)
Query: 429 NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPF 488
+ S G+Y C T ++ +
Sbjct: 74 SLQLSDTGQYQCLVFLGHQTFVSQPGY--------------------------------- 100
Query: 489 SYKTRTTNLQIQSPP---QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMK 544
+ ++ P ++P + + ++ + + + + G P P ++ W++
Sbjct: 101 --------VGLEGLPYFLEEP---------EDRTVAANTPFNLSCQAQGPPEPVDLLWLQ 143
Query: 545 NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVL 599
+ + + ++ + + TS+++ A NA G T S ++ VL
Sbjct: 144 DAVPLATA-----PGHGPQRSLHVPGL--NKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 55.3 bits (133), Expect = 8e-09
Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENII 729
+ F+ T T L +++ P + W R+ + L + +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 730 LELKEADS--------ETDAGDYKVVATNELGSA-THGARVTVDV 765
+ S +D G Y+ + + + V ++
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
Score = 36.0 bits (83), Expect = 0.024
Identities = 21/191 (10%), Positives = 51/191 (26%), Gaps = 54/191 (28%)
Query: 308 FLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRK--- 362
F+ ++T T Q+++ +V WL+ G+ ++ + + +
Sbjct: 5 FVGNPGNITGARG-LTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 363 ------LVIKRVTQDDE------------TDIGVLA-LNVKS----VSKLKWLDFGSGG- 398
L I + D T + + ++ + + + +
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTP 123
Query: 399 ----------------WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 442
W +D + +N ++C+A
Sbjct: 124 FNLSCQAQGPPEPVDLLWL----QDAVPLATAPGHGPQRSLHVPGLN----KTSSFSCEA 175
Query: 443 TNEAGTAETRT 453
N G +RT
Sbjct: 176 HNAKGVTTSRT 186
Score = 30.3 bits (68), Expect = 1.8
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDSSV 60
+ L I + D G Y + S V L P + PE +++
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124
Query: 61 TLH 63
L
Sbjct: 125 NLS 127
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 71.7 bits (175), Expect = 1e-13
Identities = 50/248 (20%), Positives = 75/248 (30%), Gaps = 26/248 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
E K E G YT S SN L +S V + P + G+ DS
Sbjct: 53 ENKKNEWIQEKAEATRTGTYTCSNSNGLT-SSIYVFVRDPAKLFLVGLP-LFGKEDSDAL 110
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI----ETTSTTYEVTKLTTKHEYMFRVA 117
+ V+ Y L D + T V + + A
Sbjct: 111 VRCPL---TD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCV-RCAA 165
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DI 176
+ GT S V +A PV+ P + + T+ C + V T +
Sbjct: 166 QRD--GTWLHSDKFTLKVREAI--KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNS 221
Query: 177 KWYKDDSLIKGRNITYENNVARF----------TVVNCSESSEGRYTCKATNEAGTAETS 226
W K + + N+ R T+ + G + C A N G+A +
Sbjct: 222 MWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVT 281
Query: 227 CTLLVQGK 234
TL V K
Sbjct: 282 TTLKVVEK 289
Score = 52.0 bits (124), Expect = 3e-07
Identities = 41/323 (12%), Positives = 86/323 (26%), Gaps = 53/323 (16%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVA 197
+P + P I + + +++L C+ ++W N EN
Sbjct: 6 SPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYF----NEMVENKKN 57
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK-EIKESARHIITARGTQRKLVIK 256
+ + G YTC +N +S + V+ ++ + + +++
Sbjct: 58 EWIQEKAEATRTGTYTCSNSN---GLTSSIYVFVRDPAKLFLVGLPLFGKEDSD--ALVR 112
Query: 257 -RVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315
+T + + L + F + +V
Sbjct: 113 CPLTDPQVSQY-------------SLIECDGKSLPTDLTFVPNPKAG-------ITIKNV 152
Query: 316 TLVPHLGD----ATFQ-VELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ 370
H A L S +K + K I +++ T + +
Sbjct: 153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIP-----VVSVPETSHL-----LKK 202
Query: 371 DDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNC 430
D + +V + WL + + R T+ +
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQ---PQHIAQVKHNSWHRGDFNYERQETLTISSA 259
Query: 431 SESSEGRYTCKATNEAGTAETRT 453
G + C A N G+A T
Sbjct: 260 RVDDSGVFMCYANNTFGSANVTT 282
Score = 50.1 bits (119), Expect = 1e-06
Identities = 33/269 (12%), Positives = 65/269 (24%), Gaps = 56/269 (20%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST------- 590
+ W + + + T TYT + +N S+
Sbjct: 38 DFVRWTFKTYFNEMV-------ENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRD 90
Query: 591 -----------------SLDLSLQVLGY---IIQQQEKNSLKF----TKVATLDPSTLQY 626
+ + E + T V
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIK 150
Query: 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686
V+ + A+ G ++ L + + P+ +K+
Sbjct: 151 NVKRAYHRLCVRCA--AQRD---GTWLHSDKFTLKVREAIKAI---PVVSVPETSHLLKK 202
Query: 687 KGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-------ILELKEADSE 738
T ++ +K + +W + N + + L + A
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA-RV 261
Query: 739 TDAGDYKVVATNELGSATHGARVTVDVEK 767
D+G + A N GSA + V VEK
Sbjct: 262 DDSGVFMCYANNTFGSANVTTTLKV-VEK 289
Score = 47.4 bits (112), Expect = 7e-06
Identities = 34/239 (14%), Positives = 60/239 (25%), Gaps = 54/239 (22%)
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTA---------------ETRTMWPGLP 459
N EN + + G YTC +N ++
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSD 108
Query: 460 LSI----------VVSLRKADTRVKPP-------MKRVLQKLAVPFSY------------ 490
+ SL + D + P K + V +Y
Sbjct: 109 ALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD 168
Query: 491 --KTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGA 547
+ ++ AI +V S L + V W+K
Sbjct: 169 GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNP 228
Query: 548 EITDSKACRIFID-------EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ + E T+ I S D+ + A N GS ++ +L+V+
Sbjct: 229 QPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 37.8 bits (87), Expect = 0.009
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 19/113 (16%)
Query: 668 SPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 725
SPG+ P E V+ T+ L + W +
Sbjct: 6 SPGEPSPPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEMV-------EN 54
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
+ ++A++ G Y +N L S+ + V V + + + +
Sbjct: 55 KKNEWIQEKAEAT-RTGTYTCSNSNGLTSSIY-----VFVRDPAKLFLVGLPL 101
Score = 37.0 bits (85), Expect = 0.017
Identities = 8/92 (8%), Positives = 18/92 (19%), Gaps = 3/92 (3%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742
KE + + + L P + +K
Sbjct: 102 FGKEDSDALVRCPLTDPQVSQYSLIECDGKSL--PTDLTFVPNPKAGITIKNVKRAYHRL 159
Query: 743 DYKVVATNELGS-ATHGARVTVDVEKVGRPSI 773
+ A + + + V P +
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAIPVV 191
Score = 30.5 bits (68), Expect = 2.1
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 534 GFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGS-T 590
+ S ++ +G + + + + I I +V RA A
Sbjct: 117 DPQVSQYSLIECDGKSLPTDL--TFVPNPK-AGITIKNVKRAYHRLCVRCAAQRDGTWLH 173
Query: 591 SLDLSLQVLGYI 602
S +L+V I
Sbjct: 174 SDKFTLKVREAI 185
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 67.5 bits (165), Expect = 1e-13
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 33 SATTKVTLLSAPGAPDTPEI--VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV 90
SA T + L P+ P V +S+ + W PP++ V GY +
Sbjct: 14 SAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQ 72
Query: 91 WNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
K++ Y + L Y+ + A N +G G Y P
Sbjct: 73 TIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL----YESAVTRPHTSGP 123
Score = 56.3 bits (136), Expect = 1e-09
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 587 AGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
TS+ +S + V GY I + + +D YT+ENL S Y
Sbjct: 38 PLVTSIVVSWTPPENQNIVVRGYAIGYGIGSP--HAQTIKVDYKQRYYTIENLDPSSHYV 95
Query: 639 FQVFAENSVGLGPEATTE 656
+ A N+VG G
Sbjct: 96 ITLKAFNNVGEGIPLYES 113
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 69.3 bits (169), Expect = 2e-13
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
+G + ++ V P + + S S +T+ C V+ P P ++W
Sbjct: 86 MKLGETEVTKQE-HLSVVKP-----LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139
Query: 180 KDDSLI------KGRNITYENNVARFTVV-NCSESSEGRYTCKATNEAGTAE 224
+ + G + ++ V + + TC N+ A
Sbjct: 140 MPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Score = 53.1 bits (127), Expect = 5e-08
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN----KPLLSSPKKREIFDGENI 728
E + + + V A P P + W P ++ + DG
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
+ + V N+ A HG V+ + +
Sbjct: 165 VAVDLSL-PKPWHLPVTCVGKNDKEEA-HGVYVSGYLSQ 201
Score = 51.6 bits (123), Expect = 2e-07
Identities = 28/208 (13%), Positives = 52/208 (25%), Gaps = 55/208 (26%)
Query: 401 FESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
+ + + +I N V + S +G Y C+
Sbjct: 45 HDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE------------ 92
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T+ +L + P + + + +
Sbjct: 93 ------------------------------VTKQEHLSVVKPLT------LSVHSERSQF 116
Query: 521 SVKSQWKVEVKYFGFPRPEISW-MKNGAEITDSKA-CRIFIDEETS--TIAIYSVVRADT 576
S V FP P + W M G E + A + +++ S S+ +
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 577 STYTVTATNAAGSTSLDLSLQVLGYIIQ 604
T N + V GY+ Q
Sbjct: 177 LPVTCVGKNDKEEAH---GVYVSGYLSQ 201
Score = 46.6 bits (110), Expect = 8e-06
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 23/96 (23%)
Query: 160 SSVTLECV---VSGVPTPDIKWYK----DDSLIKGR----------------NITYENNV 196
VTL VS P ++ W+K ++ ++ GR +I N
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V + S +G Y C+ L V
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
Score = 38.5 bits (89), Expect = 0.004
Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 17/83 (20%)
Query: 534 GFPRPEISWMKNGAEITDSKACR-----------------IFIDEETSTIAIYSVVRADT 576
P E+SW K G R I T + + + +
Sbjct: 20 LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 79
Query: 577 STYTVTATNAAGSTSLDLSLQVL 599
Y + L V+
Sbjct: 80 GNYLCRMKLGETEVTKQEHLSVV 102
Score = 36.2 bits (83), Expect = 0.021
Identities = 18/171 (10%), Positives = 35/171 (20%), Gaps = 52/171 (30%)
Query: 332 SPDIQVKWLKKGKEIKE-----------------SARHIITSRGTQRKLVIKRVTQDDE- 373
P+I+V W K G ++ I LV+ +
Sbjct: 21 GPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 80
Query: 374 -----------TDIGVLALNVKS----VSKLKWLDFGSGG-----------------WWF 401
L+V + F W
Sbjct: 81 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLM 140
Query: 402 ESKYKDDSLIKGRNITYENN--VARFTVVNCSESSEGRYTCKATNEAGTAE 450
+ + E + ++ ++ + TC N+ A
Sbjct: 141 PEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Score = 36.2 bits (83), Expect = 0.023
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 18/88 (20%)
Query: 695 KVKASPAPSIVWFRNNKP-------------LLSSPKKREIF----DGENIILELKEADS 737
+V P + WF+ + R F L + A +
Sbjct: 17 RVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA-N 75
Query: 738 ETDAGDYKVVATNELGSATHGARVTVDV 765
+ G+Y T ++V
Sbjct: 76 ISHDGNYLCRMKLGETEVTKQEHLSVVK 103
Score = 32.3 bits (73), Expect = 0.39
Identities = 6/61 (9%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSVTL 62
++ L + G+Y + + + ++++ E S +T+
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124
Query: 63 H 63
Sbjct: 125 T 125
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 71.4 bits (174), Expect = 2e-13
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 6/110 (5%)
Query: 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDD 182
G ++ P P + + + L C ++ +I WYK++
Sbjct: 113 NGDCVQGIVRSHIRKP-----PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNN 167
Query: 183 SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ Y + + N GRY C + + +
Sbjct: 168 QELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC 217
Score = 71.0 bits (173), Expect = 2e-13
Identities = 30/246 (12%), Positives = 62/246 (25%), Gaps = 26/246 (10%)
Query: 7 TLTIVKFEDKDLG-DYTISLSNALGQA-SATTKVTLLSAPG-APDTPEIVGRSDSSVTLH 63
L I + D Y +++ G + + P P+T E+ + L+
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVWN-KIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122
+ + E ++ K + + + +
Sbjct: 150 CGIL--YAKHYNN--ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDD 205
Query: 123 GTGPASHNTRYVV---VKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD---- 175
V D +I +P + G + C
Sbjct: 206 VRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG--EPANITCTAVSTSLLVDDVL 263
Query: 176 IKWYKDDSLIKGRNITYENNVAR--------FTVVNCSESSEGR-YTCKATNEAGTAETS 226
I W I G + + + N +E G YTC+ N +
Sbjct: 264 IDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLT 323
Query: 227 CTLLVQ 232
T++++
Sbjct: 324 TTVVLE 329
Score = 61.0 bits (147), Expect = 4e-10
Identities = 25/204 (12%), Positives = 49/204 (24%), Gaps = 49/204 (24%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
YK++ + Y + + N GRY C + + IVV
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN---------DIVV 214
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+R L + ++D + +++
Sbjct: 215 ---------------------------SRCKILTVIPSQDHRFKLILDPKIN---VTIGE 244
Query: 525 QWKVEVKYFGFPRPE----ISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSVVRAD 575
+ I W I I +T+ +V
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304
Query: 576 T-STYTVTATNAAGSTSLDLSLQV 598
+TYT N +L ++ +
Sbjct: 305 IGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 56.0 bits (134), Expect = 2e-08
Identities = 23/195 (11%), Positives = 38/195 (19%), Gaps = 52/195 (26%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
K + N +N S S RY C T + G +
Sbjct: 73 EKIGKTRRPLNRRVKNGDLWIANYT-SNDSHRRYLCTVTTKNGDCVQGIV---------- 121
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
I+ PP K
Sbjct: 122 -------------------------------RSHIRKPPS------CIPETYELGTHDKY 144
Query: 525 QWKVEVKYF-GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
+ I+W KN E+ + + I++ D+ Y
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELIID---GTKYSQSGQNLIIHNPELEDSGRYDCYV 201
Query: 584 TNAAGSTSLDLSLQV 598
D+ +
Sbjct: 202 HYDDVRIKNDIVVSR 216
Score = 55.6 bits (133), Expect = 2e-08
Identities = 31/292 (10%), Positives = 55/292 (18%), Gaps = 79/292 (27%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPT---------PDIKWYKDDSLIKGRNITYENN 195
+ + +A + +C + W K + N +N
Sbjct: 30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG 89
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV------------------------ 231
S S RY C T + G
Sbjct: 90 DLWIANYT-SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDL 148
Query: 232 -----------------QGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV---LAL 271
+E+ + L+I +D G
Sbjct: 149 YCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---LIIHNPELEDS---GRYDCYVH 202
Query: 272 NVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQ---- 327
K + L + F L V A
Sbjct: 203 YDDVRIKNDIVVSRCKIL---------TVIPSQDHRFKLILDPKINVTIGEPANITCTAV 253
Query: 328 -VELSSPDIQVKWLKKGKEIKESARHIITSRGTQRK-----LVIKRVTQDDE 373
L D+ + W I + + + L + VT++
Sbjct: 254 STSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYI 305
Score = 55.2 bits (132), Expect = 3e-08
Identities = 26/277 (9%), Positives = 53/277 (19%), Gaps = 53/277 (19%)
Query: 532 YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT-STYTVTATNAAGST 590
+ ++W K G + + I + D+ Y T T G
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLN-----RRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDC 116
Query: 591 ---SLDLSLQVLGYIIQQQEKNSLKFTKVAT----------------------LDPSTLQ 625
+ ++ I + + L +
Sbjct: 117 VQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTK 176
Query: 626 YTVEN---------LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676
Y+ L D Y V+ T+ +
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCY--VHYDDVRIKNDIV--VSRCKILTVIPSQDHRFKL 232
Query: 677 ERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRNNKPLLSSPKKREIF-----DGEN 727
+ V + ++ I W + ++
Sbjct: 233 ILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITE 292
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + E Y N T V ++
Sbjct: 293 ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 52.1 bits (124), Expect = 3e-07
Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 15/125 (12%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPA 701
G + P I E +K I L + A
Sbjct: 109 VTTKNGDCVQGIVRSHIRK----------PPSCIPETYELGTHDKYGIDLYCGILYAKHY 158
Query: 702 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
+I W++NN+ L+ K II D+G Y + + V
Sbjct: 159 NNITWYKNNQELIIDGTKYSQSGQNLIIHNP----ELEDSGRYDCYVHYDDVRIKNDIVV 214
Query: 762 TVDVE 766
+
Sbjct: 215 SRCKI 219
Score = 33.3 bits (75), Expect = 0.33
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 6/89 (6%)
Query: 699 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758
+ W + K P R + +G+ L + S Y T + G G
Sbjct: 65 DKDNVVNWEKIGKTRR--PLNRRVKNGD---LWIANYTSNDSHRRYLCTVTTKNGDCVQG 119
Query: 759 -ARVTVDVEKVGRPSINSIDIDLNHVHYL 786
R + P + + L
Sbjct: 120 IVRSHIRKPPSCIPETYELGTHDKYGIDL 148
Score = 31.7 bits (71), Expect = 1.0
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 397 GGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGR-YTCKATNEAGTAETRT 453
GW + S++ E + N +E G YTC+ N T
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITEATL---YFENVTEEYIGNTYTCRGHNYYFDKTLTT 324
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 70.6 bits (173), Expect = 2e-13
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 2/112 (1%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + + P + SD+ + W PP+ + Y L + +
Sbjct: 1 GSPGISGGGGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTT 60
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+++ + Y V L Y ++AV AS + AP +
Sbjct: 61 F--RLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKN 110
Score = 66.4 bits (162), Expect = 6e-12
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
+Y + +S Q S + + +P + S++S++L W P+
Sbjct: 172 EYGVGISAVMNSKQ-SIPATMNARTELDSPRDLMVTASSETSISLIWTKAS----GPIDH 226
Query: 78 YVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
Y + + T+Y +T L EY+ + A S
Sbjct: 227 YRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
Score = 63.3 bits (154), Expect = 5e-11
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+S + S + + AP + R+ +S+ L W + + Y
Sbjct: 81 YEVSISAVRGTNE-SDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVY 139
Query: 79 VLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+ ++ ++ K +T +T L EY ++AV + + +
Sbjct: 140 STLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDS 199
Query: 139 PVD 141
P D
Sbjct: 200 PRD 202
Score = 47.9 bits (114), Expect = 6e-06
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ T A+ TS+ L + Y I + + T+ YT+ +L +
Sbjct: 203 LMVT-ASSETSISLIWTKASGPIDHYRITFTPSSG--ISSEVTVPRDRTSYTLTDLEPGA 259
Query: 636 EYYFQVFAENSVGLGPEATTE 656
EY + AE E+T +
Sbjct: 260 EYIISITAERGRQQSLESTVD 280
Score = 47.1 bits (112), Expect = 1e-05
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
T + +V +++ L P QY+V+ LR S Y +
Sbjct: 27 SDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSIS 86
Query: 643 AENSVGLGPEATTELVA 659
A ++T+
Sbjct: 87 AVRGTNESDASSTQFTT 103
Score = 44.0 bits (104), Expect = 1e-04
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 566 IAIYSVVRADTSTYTVTAT---------NAAGSTSLDLS-----LQVLGYIIQQQEKNSL 611
A+ +D S+ T + +TSLDL + Y +
Sbjct: 86 SAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGE 145
Query: 612 KFTK--VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
++ + V T + T+ +L +EY + A + AT
Sbjct: 146 QYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATM 191
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 66.4 bits (162), Expect = 2e-13
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQ-DDGHSPVTGYVLESHDKDE 87
+S T V T + P P + +D+ V L+W + + S VTGY + +
Sbjct: 3 SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V + T T+ E+ L K +Y+ V A G G +S
Sbjct: 63 NNVQV-LNTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSS 101
Score = 31.7 bits (72), Expect = 0.30
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+V GY + + + + T L K +Y +V A G G
Sbjct: 49 EVTGYKVFYRTSSQNNVQVLNT----NKTSAELVLPIKEDYIIEVKATTDGGDGT 99
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 71.3 bits (174), Expect = 2e-13
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 22/127 (17%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
A N +G S V V P ++ A + V G P P ++
Sbjct: 232 AENDVGRAEVSVQ---VNVSFP---------ASVQLHTAVEMHHWCIPFSVDGQPAPSLR 279
Query: 178 WYKDDSLIKGRNITYENNVAR----------FTVVNCSESSEGRYTCKATNEAGTAETSC 227
W + S++ + + + + + + G YT A N G A S
Sbjct: 280 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 339
Query: 228 TLLVQGK 234
Sbjct: 340 MAAFMDN 346
Score = 70.2 bits (171), Expect = 5e-13
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
P ++ + ++ V L C V G W + + + +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 203 --NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
S+ + TC A N+ G AE S + V
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 248
Score = 67.1 bits (163), Expect = 5e-12
Identities = 25/176 (14%), Positives = 45/176 (25%), Gaps = 59/176 (33%)
Query: 431 SESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSY 490
S+ + TC A N+ G AE
Sbjct: 221 SDLNRKNVTCWAENDVGRAEV--------------------------------------- 241
Query: 491 KTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550
+ + + P V+ + SV G P P + W+ NG+ +
Sbjct: 242 ---SVQVNVSFPASVQLHTAVEMHHWCIPFSVD----------GQPAPSLRWLFNGSVLN 288
Query: 551 DSKACRIFIDE-------ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
++ E + + + YT+ A N G S + +
Sbjct: 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Score = 59.8 bits (144), Expect = 1e-09
Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 25/151 (16%)
Query: 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
V + ++ +AEN VG E + ++ F
Sbjct: 211 SLGLTLANVTSDLNRKNV--TCWAENDVG-RAEVSVQV--------------NVSFPASV 253
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-------IFDGENIILEL 732
+ T E + V PAPS+ W N L + + L L
Sbjct: 254 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + + G+Y ++A N G A+
Sbjct: 314 NQP-THVNNGNYTLLAANPFGQASASIMAAF 343
Score = 58.6 bits (141), Expect = 3e-09
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
P + +V + L +V+ W ++ K ++ L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL--PSLGL 214
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L S+ + + A N++G A +V V
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
Score = 49.4 bits (117), Expect = 3e-06
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G + W+ E + + + T+ + T A N G +
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDLNRKNVTCWAENDVGRAEVS 242
Query: 594 LSLQV 598
+ + V
Sbjct: 243 VQVNV 247
Score = 39.0 bits (90), Expect = 0.005
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
L + + + G+YT+ +N GQASA+ + P
Sbjct: 310 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 36.3 bits (83), Expect = 0.037
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAET 451
+ + + G YT A N G A
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASA 337
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 65.5 bits (160), Expect = 3e-13
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P E+V + +S+ + W V Y + D + + +
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSW-QNVKYYRITYGETGGDSPVQEFTVPGYYS 64
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
T ++ L +Y V A + G ++ + +
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 50.1 bits (120), Expect = 7e-08
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
A TSL +S V Y I E + T+ T+ L+ +Y
Sbjct: 18 DATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDY 77
Query: 638 YFQVFAENSVGLGPEATT 655
V+A ++ G E +
Sbjct: 78 TITVYAYDTFFPGYEPNS 95
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 65.8 bits (161), Expect = 4e-13
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 27 NALGQASATTKVTLLSAPGAPDTP----EIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLE 81
N G +T +T+++ P P + + S+ + W PP + +TGY +
Sbjct: 8 NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIR 67
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+E + Y T L +Y F+V+A+ GTGP S+
Sbjct: 68 HRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN 115
Score = 45.0 bits (107), Expect = 7e-06
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
+ GY I+ ++ ++ TL+P+ L Y L S+Y FQV A G GP
Sbjct: 60 FITGYKIRHRKTTRRG--EMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPP 113
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 68.2 bits (166), Expect = 4e-13
Identities = 30/166 (18%), Positives = 46/166 (27%), Gaps = 11/166 (6%)
Query: 70 DGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
G Y + + F N +++ + VT L ++ A G A+
Sbjct: 56 SGDKIYDNYYPDLKGRVHF-TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGV--ANK 112
Query: 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDD-SLIKG 187
V P D + L+C G +W K S
Sbjct: 113 KFLLTV------LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP 166
Query: 188 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
E +V N S G Y+C N G+ + L V
Sbjct: 167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 58.2 bits (140), Expect = 1e-09
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 19/140 (13%)
Query: 627 TVENLR--DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTV 684
V NL+ D Y Q + + G+ L L P F + +
Sbjct: 87 NVTNLQLSDIGTY--QCKVKKAPGVA-NKKFLLTVLV----------KPSGTRCFVDGSE 133
Query: 685 KEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGD 743
+ +L + K S W + + + + + ++ +K A S +G
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT--PWLAEMTSPVISVKNA-SSEYSGT 190
Query: 744 YKVVATNELGSATHGARVTV 763
Y N +GS R+ V
Sbjct: 191 YSCTVQNRVGSDQCMLRLDV 210
Score = 57.4 bits (138), Expect = 2e-09
Identities = 29/178 (16%), Positives = 43/178 (24%), Gaps = 49/178 (27%)
Query: 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQ 482
A V N S G Y CK G A
Sbjct: 84 ASINVTNLQLSDIGTYQCKVKKAPGVAN-------------------------------- 111
Query: 483 KLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542
+ L + P + S +K + K G + W
Sbjct: 112 ----------KKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPK-----EGSLPLQFEW 156
Query: 543 MKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
K T + + I++ + + TY+ T N GS L L V+
Sbjct: 157 QKLSDSQTMPT--PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 46.2 bits (109), Expect = 1e-05
Identities = 24/119 (20%), Positives = 30/119 (25%), Gaps = 31/119 (26%)
Query: 147 IQEPLKDSVAGFQSSVTLECVVSGVPTP----DIKWYKDDSLIKG---RNITYENNV--- 196
I P + + L C + P DI+W S + I Y +
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 197 ---------------------ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
A V N S G Y CK G A L V K
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Score = 36.6 bits (84), Expect = 0.019
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP-EIVGRSDSS 59
++ A++ + + D+G Y + A G A+ +T+L P + +
Sbjct: 79 VKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGND 138
Query: 60 VTLH-----WRPP 67
L P
Sbjct: 139 FKLKCEPKEGSLP 151
Score = 35.0 bits (80), Expect = 0.051
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 407 DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
DS E +V N S G Y+C N G+ +
Sbjct: 160 SDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQ 203
Score = 35.0 bits (80), Expect = 0.053
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 24/89 (26%)
Query: 536 PRPEISWMKNGAEITDSKACRIF------------------------IDEETSTIAIYSV 571
+I W+ + ++ I + ++I + ++
Sbjct: 32 GPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNL 91
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+D TY A G + L VL
Sbjct: 92 QLSDIGTYQCKVKKAPGVANKKFLLTVLV 120
Score = 32.7 bits (74), Expect = 0.29
Identities = 20/124 (16%), Positives = 31/124 (25%), Gaps = 31/124 (25%)
Query: 683 TVKEKGTIRLMAKVKASPAP----SIVWFRNNKPLLSSPKKREIFDGENIILELKEADS- 737
+ T L K SP I W + + ++ G+ I
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 738 ----------------------ETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+D G Y+ G A +TV V +PS
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV----KPSGTR 126
Query: 776 IDID 779
+D
Sbjct: 127 CFVD 130
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 67.1 bits (164), Expect = 6e-13
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
+ + P E+ ++++++L WR P + Y L +I
Sbjct: 1 INAGTDLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVD 56
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
ST++ + L EY + A + VV +P
Sbjct: 57 STSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKG 100
Score = 64.4 bits (157), Expect = 5e-12
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
+YTISL ++ TT + + G+P +++S T+ W PP+ S V
Sbjct: 70 EYTISLVAEKGRHKSKPTT-IKGSTVVGSPKGISFSDITENSATVSWTPPR----SRVDS 124
Query: 78 YVLESHDKDEFMVWNK-IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
Y + ++ + T ++ KL +Y + +V
Sbjct: 125 YRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI 179
Score = 42.8 bits (101), Expect = 1e-04
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
T+L L + Y + + K + + + + L +EY
Sbjct: 17 DPTETTLSLRWRRPVAKFDRYRLTYVSPSGKK--NEMEIPVDSTSFILRGLDAGTEYTIS 74
Query: 641 VFAENSVGLGPEATTE 656
+ AE T +
Sbjct: 75 LVAEKGRHKSKPTTIK 90
Score = 40.5 bits (95), Expect = 7e-04
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+V Y + V T+D S + + L +Y + + +
Sbjct: 121 RVDSYRVSYVPITG-GTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI 179
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 67.5 bits (164), Expect = 7e-13
Identities = 20/87 (22%), Positives = 31/87 (35%)
Query: 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS 208
P +A SV+L C +G +P W +T E + T+ S +
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGN 65
Query: 209 EGRYTCKATNEAGTAETSCTLLVQGKE 235
E Y C AT E+ E + +
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIYSFP 92
Score = 53.6 bits (128), Expect = 3e-08
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 25/155 (16%)
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
E T++T + ++ +E+ + A + + V + + + PL
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATC--ESRKLEKGIQ-VEIYSFPKDPEIHLSGPL--- 103
Query: 155 VAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNI-------TYENNVARFTVVNC 204
AG +T++C V+ V +I K D L+K + + E T
Sbjct: 104 EAG--KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 161
Query: 205 SESSEGRYTCKATNEAG-------TAETSCTLLVQ 232
E C+A + L V
Sbjct: 162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196
Score = 44.0 bits (103), Expect = 6e-05
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
+ ++ L +P W L+ + +G L + S
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNPV-SFG 64
Query: 740 DAGDYKVVATNELGSATHGARVTVDV 765
+ Y AT E G +V +
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIYS 90
Score = 39.0 bits (90), Expect = 0.003
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P SW + + + ++ + TST+ + V + +Y TAT +
Sbjct: 27 GCESPFFSW-RTQIDSPLNG--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG 83
Query: 594 LSLQVLGYIIQQQEKNS 610
+ +++ + + S
Sbjct: 84 IQVEIYSFPKDPEIHLS 100
Score = 37.4 bits (86), Expect = 0.009
Identities = 27/192 (14%), Positives = 46/192 (23%), Gaps = 55/192 (28%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+T E + T+ S +E Y C AT E+ E
Sbjct: 36 RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE-------------- 81
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+ ++I S P+ P I L S L
Sbjct: 82 ----------------------------KGIQVEIYSFPKDPEIHL------SGPLEAGK 107
Query: 525 QWKVEVKYFG---FPRPEISWMKNGAEITDSKACRIF----IDEETSTIAIYSVVRADTS 577
V+ F R EI +K + + ++ ++ + V+
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167
Query: 578 TYTVTATNAAGS 589
A
Sbjct: 168 VLVCRAKLHIDE 179
Score = 34.4 bits (78), Expect = 0.098
Identities = 17/141 (12%), Positives = 37/141 (26%), Gaps = 17/141 (12%)
Query: 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
+ +T T+ + +E+ + A E ++ + S P E
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEKGIQV-------EIYSF---PKDPEIH 98
Query: 680 EEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKPLLSSP--KKREIFDGENIILELK- 733
++ I + V I + + + S + + E LE+
Sbjct: 99 LSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTF 158
Query: 734 EADSETDAGDYKVVATNELGS 754
E A +
Sbjct: 159 TPVIEDIGKVLVCRAKLHIDE 179
Score = 33.2 bits (75), Expect = 0.19
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVG-RSDSSV 60
E ++TLT+ + Y + + + +V + S P P+ + +
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPI 109
Query: 61 TLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
T+ + ++++S + E +ET S T + +
Sbjct: 110 TVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVL 169
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPV 140
A I + R V + V
Sbjct: 170 VCRAKLHIDEMDSVPTVRQAVKELQV 195
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 67.2 bits (163), Expect = 8e-13
Identities = 31/233 (13%), Positives = 59/233 (25%), Gaps = 59/233 (25%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
I+W K+G I E+ + S + Y +
Sbjct: 26 DAEAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKP--- 75
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
LQV + ++ + D + +
Sbjct: 76 --LQV--------------YYRMGSADDAKKD------------------AAKKDDAKKD 101
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+ + +G Q P V GT ++ P I+W N+K +
Sbjct: 102 DAKKDGSDGNEEMGGITQTPY--------KVSISGT-TVILTCPQYPGSEILWQHNDKNI 152
Query: 714 LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG-----ARV 761
+ I E+ + + ++ E +G Y + ARV
Sbjct: 153 GGDEDDKNIGSDEDHLSLKEFSELE-QSGYYVCYPRGSKPEDANFYLYLRARV 204
Score = 63.8 bits (154), Expect = 1e-11
Identities = 26/223 (11%), Positives = 49/223 (21%), Gaps = 53/223 (23%)
Query: 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209
+K SV L C +I W+KD +I + ++ + + ++
Sbjct: 9 LVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLT----EDKKKWNLGSNAKDPR 61
Query: 210 GRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269
G Y CK + + + K+ A A+ K
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAK----------------- 104
Query: 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE 329
+ S E + V G
Sbjct: 105 -----------------------------KDGSDGNEEMGGITQTPYKVSISGTTVILTC 135
Query: 330 LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
P ++ W K I + + +
Sbjct: 136 PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQ 178
Score = 60.7 bits (146), Expect = 1e-10
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVV 202
+ Q P K S++G ++V L C P +I W +D I G + ++ ++
Sbjct: 116 GITQTPYKVSISG--TTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 171
Query: 203 NCSESS-EGRYTCKATNEAGTAETS 226
SE G Y C
Sbjct: 172 EFSELEQSGYYVCYPRGSKPEDANF 196
Score = 57.2 bits (137), Expect = 2e-09
Identities = 24/187 (12%), Positives = 51/187 (27%), Gaps = 27/187 (14%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+KD +I + ++ + + ++ G Y CK + PL +
Sbjct: 35 FKDGKMIGFLT----EDKKKWNLGSNAKDPRGMYQCKGSQNKSK----------PLQVYY 80
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+ AD K K+ K + ++ ++S+
Sbjct: 81 RMGSADDAKKDAAKKDDAKKD------------DAKKDGSDGNEEMGGITQTPYKVSISG 128
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
V + +P EI W N I + + +E + Y
Sbjct: 129 T-TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 585 NAAGSTS 591
+ +
Sbjct: 188 GSKPEDA 194
Score = 38.7 bits (89), Expect = 0.003
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 405 YKDDSLIKG--RNITYENNVARFTVVNCSESS-EGRYTCKATNEAGTAETRTMW 455
+D I G + ++ ++ SE G Y C ++
Sbjct: 146 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY 199
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 66.5 bits (162), Expect = 1e-12
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S+TL +P ++ G+NI +V G +TC
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPR----GKNIQGGKT---LSVSQLELQDSGTWTCTVLQN 165
Query: 220 AGTAETSCTLLVQG 233
E ++V
Sbjct: 166 QKKVEFKIDIVVLA 179
Score = 50.7 bits (121), Expect = 3e-07
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 21/102 (20%)
Query: 151 LKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLI--------------------KGRN 189
+K V G + +V L C S + W + + R
Sbjct: 1 MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60
Query: 190 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
++ + N Y C+ ++ + L
Sbjct: 61 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLT 102
Score = 48.1 bits (114), Expect = 2e-06
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P + + + T+++ + D+ T+T T
Sbjct: 123 PGSSPSVQCRSPRGKNI----------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 594 LSLQVLGY 601
+ + VL +
Sbjct: 173 IDIVVLAF 180
Score = 45.0 bits (106), Expect = 2e-05
Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 11/81 (13%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742
+ + ++ L + +PS+ + L + + D+G
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQL-ELQDSG 156
Query: 743 DYKVVATNELGSATHGARVTV 763
+ + V
Sbjct: 157 TWTCTVLQNQKKVEFKIDIVV 177
Score = 32.3 bits (73), Expect = 0.41
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 19/94 (20%)
Query: 681 EKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPK-----------------KREI 722
+ + +KG T+ L + W +N+ + + +R +
Sbjct: 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 62
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSAT 756
+D N L +K D+ Y ++
Sbjct: 63 WDQGNFPLIIKNL-KIEDSDTYICEVEDQKEEVQ 95
Score = 32.3 bits (73), Expect = 0.42
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAETRT 453
+V G +TC E +
Sbjct: 145 LSVSQLELQDSGTWTCTVLQNQKKVEFKI 173
Score = 31.5 bits (71), Expect = 0.66
Identities = 6/69 (8%), Positives = 17/69 (24%)
Query: 396 SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
G + + K + R ++ + N Y C+ ++ +
Sbjct: 41 QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFG 100
Query: 456 PGLPLSIVV 464
+
Sbjct: 101 LTANSDTHL 109
Score = 30.3 bits (68), Expect = 1.4
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
+ TL++ + E +D G +T ++ + + +L+
Sbjct: 140 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 29.2 bits (65), Expect = 4.3
Identities = 7/76 (9%), Positives = 15/76 (19%), Gaps = 17/76 (22%)
Query: 534 GFPRPEISWMKNGAEITDSKACRI-----------------FIDEETSTIAIYSVVRADT 576
+ W + D+ + I ++ D+
Sbjct: 21 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 80
Query: 577 STYTVTATNAAGSTSL 592
TY + L
Sbjct: 81 DTYICEVEDQKEEVQL 96
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 64.6 bits (157), Expect = 1e-12
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 10/131 (7%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHS--------PVTGYVLE 81
G + + P +V L W PP + + GY +
Sbjct: 4 GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 82 SHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+ + + T + L +Y +V A G S + +
Sbjct: 64 ISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEP 123
Query: 141 DA-EAPVIQEP 150
D P I P
Sbjct: 124 DIPNPPRISGP 134
Score = 33.0 bits (75), Expect = 0.12
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 598 VLGYIIQQQEK-NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+ GY + K+ V + T+ +L+ +Y+ +V AE + G +E
Sbjct: 57 LYGYEVLISSTGKDGKYKSVYVGE--ETNITLNDLKPAMDYHAKVQAEYNSIKGT--PSE 112
Query: 657 LVALATHATLGSPGQAP 673
T + P
Sbjct: 113 AEIFTTLSCEPDIPNPP 129
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 64.1 bits (156), Expect = 1e-12
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 30 GQASATTKVTLLSAPGAPDTP-----EIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLE-- 81
G + ++ + + GAP + S +V + W P + GY +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 82 SHDKDEFMVWNK-IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + + ++ R+AAV G GP S
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFS 108
Score = 42.1 bits (99), Expect = 7e-05
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 581 VTATNAAGSTSLDLS----------LQVLGYIIQQQEKNSLKFTKVA-TLDPSTLQYTVE 629
VT S ++D+ +++GY I +++ ++ + + + +
Sbjct: 25 VTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARIS 84
Query: 630 NLRDKSEYYFQVFAENSVGLGP 651
+ ++ A G+GP
Sbjct: 85 VQVHNATCTVRIAAVTRGGVGP 106
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 64.3 bits (157), Expect = 2e-12
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 30 GQASATTKV-TLLSAP-GAPDTPEIVGRSDSSVTLHWRPPQ-DDGHSPVTGYVLE--SHD 84
+S V TL P AP + R+ S+ +HW+PP + +TGY +
Sbjct: 3 SGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKAS 62
Query: 85 KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ + + T + + L EY FRVAA+ GTGPA+
Sbjct: 63 RKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATD 107
Score = 45.8 bits (109), Expect = 5e-06
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
Q+ GY I+ ++ + + + L +E L +EY F+V A G GP
Sbjct: 50 QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPA 105
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 63.1 bits (154), Expect = 2e-12
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 39 TLLSAP-GAPDTPEIVGRSDSSVTLHWRPPQDDGHS-PVTGYVLESHDKDEFMVWNKIET 96
+ S P G P + G + S+ L W PP + + Y + D + I T
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNI-T 61
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
T T + +T L Y +V A + G+GP S
Sbjct: 62 TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSP 94
Score = 41.5 bits (98), Expect = 8e-05
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+++ Y + ++ NS + + T + ++T+ L+ + Y +V A S G GP
Sbjct: 40 RIISYTVVFRDINSQQELQNIT---TDTRFTLTGLKPDTTYDIKVRAWTSKGSGP 91
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 62.8 bits (153), Expect = 2e-12
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYE 102
AP ++ +D+S+T+ W PP + +TGY + + + +ST+
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+T LT EY+ V A+ P T
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 54.4 bits (131), Expect = 2e-09
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
TS+ +S + GY I N K T+ PS+ T+ L EY
Sbjct: 12 NVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVS 71
Query: 641 VFAENSVGLGPEATTELV 658
V+A P
Sbjct: 72 VYALKDNQESPPLVGTQT 89
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 63.1 bits (153), Expect = 2e-12
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREIFDGENI 728
LF+ R ++ V G+I A+V + P + WF+ LSS + + ++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 729 ---------ILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + +A G Y+ + + +TV
Sbjct: 64 DRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 61.9 bits (150), Expect = 7e-12
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYKDDSLIK----GRNITYENNV 196
+ +D S+T V+G P +KW+K + G+++ ++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 197 ARF--------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
R + + + G Y C+ + + ++ L V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 46.1 bits (109), Expect = 2e-06
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFP---RPEISWMKNGAEITDSKACRIFIDEE--------- 562
+ ++V + G P + W K SK + +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ I A T +Y + + +L V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 35.4 bits (81), Expect = 0.012
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 400 WFESKYKDDSLIKGRNITYENNVARF--------TVVNCSESSEGRYTCKATNEAGTAET 451
WF+ K+ D S G+++ ++ R + + + G Y C+ + + +
Sbjct: 41 WFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCS 100
Score = 32.3 bits (73), Expect = 0.17
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ L I + G Y +S + +T
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 30.0 bits (67), Expect = 1.1
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 14/83 (16%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDI----QVKWLK---------KGKEIKESA 350
P F+ + V G TF ++ + VKW K G+ ++
Sbjct: 3 PIGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 351 RHIITSRGTQRKLVIKRVTQDDE 373
+ S+ +L I
Sbjct: 62 SYDRASKVYLFELHITDAQPAFT 84
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 63.1 bits (154), Expect = 3e-12
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 30 GQASATTKVTLLSAP--GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL---ESHD 84
+S + AP + S S +++HW V Y + +HD
Sbjct: 3 SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL---EKIVESYQIRYWAAHD 59
Query: 85 KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
K+E ++ + + + L +Y V A N+ G GP S KA
Sbjct: 60 KEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Score = 42.0 bits (99), Expect = 7e-05
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 580 TVTATNAAGSTSLDLSLQ------VLGYIIQQQEKNSLKFT-KVATLDPSTLQYTVENLR 632
V + S+ + + + V Y I+ + + + +ENL
Sbjct: 26 GVKVLS---SSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLL 82
Query: 633 DKSEYYFQVFAENSVGLGP 651
++Y+ +V A NS G GP
Sbjct: 83 PDTQYFIEVGACNSAGCGP 101
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 62.1 bits (151), Expect = 4e-12
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P E+V + +S+ + W P V Y + + + + +S+
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T ++ L+ +Y V A G +
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFMYS 92
Score = 50.2 bits (120), Expect = 8e-08
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 580 TVTATNAAGSTSLDLS-------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632
V A TSL +S V Y I E + T+ S+ T+ L
Sbjct: 12 EVVAAT---PTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLS 68
Query: 633 DKSEYYFQVFAENSVGLGPEATTELVALATHAT 665
+Y V+A G +++ + T
Sbjct: 69 PGVDYTITVYAWGEDSAGYMFMYSPISI-NYRT 100
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 63.0 bits (153), Expect = 4e-12
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Query: 30 GQASATTKVTLLSAP-GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT---GYVLESHDK 85
G + T V LS P P + V + +V + W + + Y +
Sbjct: 4 GSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS 63
Query: 86 -DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ +TTS +Y T L Y F V + S
Sbjct: 64 FSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWS 107
Score = 44.9 bits (106), Expect = 7e-06
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
V Y ++ + S K + D ++L YT L+ + Y F V +
Sbjct: 53 VRLYTVRWRTSFS-ASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSST 105
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 62.1 bits (151), Expect = 5e-12
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
+ S AP E + + L W P GY+L H +
Sbjct: 2 SSGSSGLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGG 57
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T++++ L Y R+ A+ P +
Sbjct: 58 ITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 45.1 bits (107), Expect = 4e-06
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ A + L+ ++ GY++ T+ L + + L +
Sbjct: 14 LEAKEV-TPRTALLTWTEPPVRPAGYLLSFHTPGG--QTQEILLPGGITSHQLLGLFPST 70
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
Y ++ A L P +T + T G P
Sbjct: 71 SYNARLQAMWGQSLLPPVST------SFTTGGLRISGP 102
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 61.6 bits (150), Expect = 6e-12
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTY 101
AP E+ +D++ + W PP PV G+ L D + Y
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQY 58
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L EY + + + + T
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSSNPAKET 88
Score = 50.1 bits (120), Expect = 7e-08
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
T+ ++ V G+ + K+ L QY++ NL+ +EY +
Sbjct: 15 TDTTALITWMPPSQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLI 74
Query: 643 AENSVGLGPEATTELV 658
+ A
Sbjct: 75 SRRGDMSSNPAKETFT 90
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 64.7 bits (157), Expect = 6e-12
Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 9/154 (5%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTST 99
S P +S + W PQ S ++ Y+L K+ W I
Sbjct: 1 SGP-VEVFITETPSQPNSHPIQWNAPQP---SHISKYILRWRPKNSVGRWKEATIPGHLN 56
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
+Y + L Y ++ ++ G + R+ + +
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEVT---RFDFTTTSTSTPVTSNTVTGETTPFSPL 113
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE 193
+ + + + W + G + YE
Sbjct: 114 VATSESVTEITASSFVVSWVSASDTVSGFRVEYE 147
Score = 60.4 bits (146), Expect = 2e-10
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFM 89
++ T T +P + + + SS + W D V+G+ +E ++ +
Sbjct: 100 SNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEP 155
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ + +T+T+ + L +Y+ V ++ G +T
Sbjct: 156 QYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 197
Score = 48.5 bits (115), Expect = 2e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 581 VTATNAAGSTSLDLSLQ------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+T T + S + + YI++ + KNS+ K AT+ YT++ L+
Sbjct: 8 ITETPS-QPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPG 66
Query: 635 SEYYFQVFAENSVGLGPEATTELV 658
Y Q+ + G +
Sbjct: 67 VVYEGQLISIQQYGHQEVTRFDFT 90
Score = 46.2 bits (109), Expect = 1e-05
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 585 NAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
++S +S V G+ ++ + + L + + +L +Y
Sbjct: 121 TEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIV 180
Query: 640 QVFAENSVGLGPEATTE 656
V+ + G +
Sbjct: 181 NVYQISEDGEQSLILST 197
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 62.8 bits (152), Expect = 7e-12
Identities = 24/128 (18%), Positives = 37/128 (28%), Gaps = 41/128 (32%)
Query: 143 EAPVIQEPLKDS-------VAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN------ 189
E P I VAG + + L+ +SG P P + W K +
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAG--NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 69
Query: 190 --------------------------ITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
+ + + FTV + EG YT N G
Sbjct: 70 APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 129
Query: 224 ETSCTLLV 231
+ + T+ V
Sbjct: 130 QVNLTVKV 137
Score = 62.8 bits (152), Expect = 7e-12
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 32/134 (23%)
Query: 498 QIQSPPQQ-PAIKLVDSNLKSQRLSVK--SQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
S Q+ P I L + V ++ +++V G P P + W K + + A
Sbjct: 5 HHHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPA 64
Query: 555 C---------------------------RIFID--EETSTIAIYSVVRADTSTYTVTATN 585
R+ ++ ++ S + + D YTVT N
Sbjct: 65 RPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 124
Query: 586 AAGSTSLDLSLQVL 599
G ++L+++V+
Sbjct: 125 PVGEDQVNLTVKVI 138
Score = 52.8 bits (126), Expect = 2e-08
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 30/110 (27%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF------------------- 723
V +RL + PAP+++W + +P +
Sbjct: 29 VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 88
Query: 724 ----------DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ I ++ A+ E D G Y V N +G V V
Sbjct: 89 ETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 39.7 bits (92), Expect = 8e-04
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+D + T+ E +D G YT+++ N +G+ V
Sbjct: 100 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 39.3 bits (91), Expect = 0.001
Identities = 21/147 (14%), Positives = 35/147 (23%), Gaps = 34/147 (23%)
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
++ ++P +V V +S P V W K + ++
Sbjct: 18 LDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE----- 72
Query: 365 IKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVAR 424
D G W K + + +
Sbjct: 73 ----------------------------DTGDSDEWVFDKKLLCETEGRVRVETTKDRSI 104
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAET 451
FTV + EG YT N G +
Sbjct: 105 FTVEGAEKEDEGVYTVTVKNPVGEDQV 131
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 61.6 bits (150), Expect = 7e-12
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 42 SAP-GAPDTPEIVGRSDSSVTLHWR-PPQDDGHSPVTGYVL--ESHDKDEFMVWNK--IE 95
S P P SD+ + L W P + ++P+ G+ + D D + + +E
Sbjct: 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ + + L + Y ++ N G S+
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSN 95
Score = 43.5 bits (103), Expect = 2e-05
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ G+ I + +S + K ++ S + + +L+ ++ Y ++ N G
Sbjct: 36 PIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESE 92
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 61.7 bits (150), Expect = 1e-11
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 30 GQASATTKVTLLSAPGAPDTP----EIVGRSDSSVTLHWRPPQDDGHSPVTGYVL---ES 82
+S ++ AP + + S +++ + W+ P ++ + + GY +
Sbjct: 3 SGSSGPVLTQ--TSEQAPSSAPRDVQARMLSSTTILVQWKEP-EEPNGQIQGYRVYYTMD 59
Query: 83 HDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+ S + L + Y +V A +IG GP S + + +
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
Score = 40.9 bits (96), Expect = 2e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDP-STLQYTVENLRDKSEYYFQVFAENSVGLGP 651
Q+ GY + + + + T+ NL + Y +V A S+G GP
Sbjct: 48 QIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGP 103
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 60.9 bits (148), Expect = 2e-11
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW 91
+S ++ P P + ++ LHW+PPQ +PV Y ++ +
Sbjct: 2 SSGSS------GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQ 51
Query: 92 NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI 147
+ ++ Y + L Y V + + T ++AP D EA +
Sbjct: 52 AETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEV 107
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 581 VTATNAAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ A N L + V Y IQ + A S + Y + +L +
Sbjct: 14 LRALNL-TEGFAVLHWKPPQNPVDTYDIQVTAPGAP--PLQAETPGSAVDYPLHDLVLHT 70
Query: 636 EYYFQVFAENSVGLGPEATTE 656
Y V L A+
Sbjct: 71 NYTATVRGLRGPNLTSPASIT 91
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 62.9 bits (152), Expect = 2e-11
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 32/191 (16%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRV 116
+ +V+L R P + G + K F + + + + +
Sbjct: 37 NLNVSLCARYP--EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCE------------ 82
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD- 175
A + + VV V+ P + L C
Sbjct: 83 -AKINDESYQSIMYIVVVVGYRIY----DVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 176 -IKWYKDDSLIKGRNITYENNVARF-----------TVVNCSESSEGRYTCKATNEAGTA 223
W S + + + + + T+ + S +G YTC A++ T
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 224 ETSCTLLVQGK 234
+ S + V
Sbjct: 198 KNSTFVRVHED 208
Score = 48.2 bits (114), Expect = 2e-06
Identities = 13/93 (13%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK----DDSLIKGRNITYENNVAR 198
+ Q + +V + C+ S + ++ + G I++++
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKG- 65
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
FT+ + S G C+A + ++ ++V
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 98
Score = 45.6 bits (107), Expect = 2e-05
Identities = 25/209 (11%), Positives = 58/209 (27%), Gaps = 55/209 (26%)
Query: 400 WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
+ + G I++++ FT+ + S G C+A + ++
Sbjct: 42 LCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAGMVFCEAKINDESYQS-------- 92
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
+ + + + L S+
Sbjct: 93 ----------------------------------IMYIVVVVGYRIYDVVLSPSH--GIE 116
Query: 520 LSVKSQWKVEVKYFGFP--RPEISWMKNGAEITDSKACRIFIDEET--------STIAIY 569
LSV + + + +W ++ K + ++ ST+ I
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 176
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQV 598
V R+D YT A++ + ++V
Sbjct: 177 GVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 38.2 bits (88), Expect = 0.005
Identities = 11/105 (10%), Positives = 26/105 (24%), Gaps = 11/105 (10%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV--WFRNNKPLLSSPKKREIFDGE 726
+ + + + L + I W + +
Sbjct: 102 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 161
Query: 727 NI--------ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ L + + +D G Y A++ L + + V V
Sbjct: 162 SGSEMKKFLSTLTIDGV-TRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 36.7 bits (84), Expect = 0.015
Identities = 22/198 (11%), Positives = 53/198 (26%), Gaps = 47/198 (23%)
Query: 303 TPAVEFLSKLPSVTL--VPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQ 360
+P + +S V S ++ V + E + S ++
Sbjct: 4 SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK 63
Query: 361 RKLVIKRVTQDD------------ETDIGVLALNVKSVSKLKWLDFGSGG---------- 398
+ I E+ ++ + V ++ +
Sbjct: 64 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123
Query: 399 -----------------WWFESKYKDDSLIKGRNITYENN------VARFTVVNCSESSE 435
W + S + R++ ++ ++ T+ + S +
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 183
Query: 436 GRYTCKATNEAGTAETRT 453
G YTC A++ T + T
Sbjct: 184 GLYTCAASSGLMTKKNST 201
Score = 35.9 bits (82), Expect = 0.026
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
+ +TLTI D G YT + S+ L +T V + P
Sbjct: 168 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 30.5 bits (68), Expect = 1.5
Identities = 12/100 (12%), Positives = 22/100 (22%), Gaps = 8/100 (8%)
Query: 673 PLFIERFEEK------TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
FI ++ T + T+ + + ++ P I
Sbjct: 4 SPFIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDS 62
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+ AG A S + V V
Sbjct: 63 KKGFTIPSYMIS-YAGMVFCEAKINDESYQSIMYIVVVVG 101
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 60.1 bits (146), Expect = 5e-11
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 30 GQASATTKVTLL-SAP-GAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVL-----E 81
+S T + S P P V ++V + W PP D + +T Y + +
Sbjct: 3 SGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVD 62
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
D+ +V I +++++ L EY V A +G GP S
Sbjct: 63 GEDRGRHVVDG-ISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPES 108
Score = 44.3 bits (105), Expect = 2e-05
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 581 VTATNAAGSTSLDLS----------LQVLGYII--QQQEKNSLKFTKVATLDPSTLQYTV 628
V + GST++ +S + Y + + + V + + +
Sbjct: 25 VMCV-SMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDL 83
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
L +EY V A VG GPE + V + T P P
Sbjct: 84 VGLEKWTEYRVWVRAHTDVGPGPE--SSPVLVRTDE--DVPSGPP 124
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 58.7 bits (142), Expect = 6e-11
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
+ + + + SS + W D V+G+ +E ++ + + + +T+T
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTAT 59
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ + L +Y+ V ++ G +T
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQSLILST 91
Score = 44.0 bits (104), Expect = 9e-06
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
++S +S V G+ ++ + + L + + +L +Y
Sbjct: 16 EITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVN 75
Query: 641 VFAENSVGLGPEATT 655
V+ + G +
Sbjct: 76 VYQISEDGEQSLILS 90
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 59.0 bits (143), Expect = 6e-11
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P + + S+ + W PP V Y L + +
Sbjct: 6 SGRSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARS 61
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ L +Y V+A+ A G A
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAV 90
Score = 47.8 bits (114), Expect = 5e-07
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
+ SL +S +VL Y + + L K ++ + T+ +L+ ++Y
Sbjct: 18 SETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVL 77
Query: 641 VFAENSVGLGPEATT 655
V A + G +
Sbjct: 78 VSAIYAAGRSEAVSA 92
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 60.8 bits (147), Expect = 8e-11
Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 26/151 (17%)
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
E + + + T + + P P ++
Sbjct: 45 ALPGQKTEFKVDSDDQWGEYSCVFLPEPMG------TANIQLHGP-----PRVKAVKSSE 93
Query: 155 VAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE---- 209
+ L C VP D WYK + + RF V + SE
Sbjct: 94 HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSES--RFFVSSSQGRSELHIE 151
Query: 210 --------GRYTCKATNEAGTAETSCTLLVQ 232
G+Y C T+ G+ + TL V+
Sbjct: 152 NLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 54.3 bits (130), Expect = 1e-08
Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 23/153 (15%)
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE 677
L ++ V++ EY P T + P
Sbjct: 45 ALPGQKTEFKVDSDDQWGEY--SCVFLPE----PMGTANIQLHGP----------PRVKA 88
Query: 678 RFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLL------SSPKKREIFDGENIIL 730
+ + E T L+ K ++ P W++ S + L
Sbjct: 89 VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSEL 148
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
++ + E D G Y+ T+ GS + V
Sbjct: 149 HIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 43.5 bits (102), Expect = 7e-05
Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 47/179 (26%)
Query: 313 PSVTLVPHLGD-ATFQVELSS---PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368
T V LG L+ +WLK G +KE +K K
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVD 56
Query: 369 TQDDE---------TDIGVLALNVKS----VSKLKWLDFGSGG----------------- 398
+ D +G + + + G
Sbjct: 57 SDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDW 116
Query: 399 -WWFESKYKDDSLIKGRNITYE----NNVARFTVVNCS-ESSEGRYTCKATNEAGTAET 451
W+ + +D +L+ G + + + N + E+ G+Y C T+ G+ +
Sbjct: 117 AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Score = 42.7 bits (100), Expect = 1e-04
Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 63/205 (30%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
K ++K F V S+ G Y+C E
Sbjct: 35 LKGGVVLK--EDALPGQKTEFKVD--SDDQWGEYSCVFLPEPMG---------------- 74
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
T N+Q+ PP+ V + S+ ++
Sbjct: 75 -----------------------------TANIQLHGPPR------VKAVKSSEHINEGE 99
Query: 525 QWKVEVKYFGFPRP-EISWMK----NGAEITDSKACRIFI--DEETSTIAIYSVVRA-DT 576
+ K P + +W K + + R F+ + S + I ++ D
Sbjct: 100 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159
Query: 577 STYTVTATNAAGSTSLDLSLQVLGY 601
Y T++ GS ++L+V +
Sbjct: 160 GQYRCNGTSSKGSDQAIITLRVRSH 184
Score = 40.8 bits (95), Expect = 6e-04
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 18/97 (18%)
Query: 683 TVKEKG-TIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
TV++ G I L + S W + L E K DS+
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFK-VDSDD 59
Query: 740 DAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSI 776
G+Y V E + + G P + ++
Sbjct: 60 QWGEYSCVFLPE-----PMGTANIQLH--GPPRVKAV 89
Score = 36.2 bits (83), Expect = 0.017
Identities = 7/65 (10%), Positives = 15/65 (23%), Gaps = 10/65 (15%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
W+K G + + Y+ T+ +
Sbjct: 28 EVTGHRWLKGGVVLKED-------ALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA---N 77
Query: 596 LQVLG 600
+Q+ G
Sbjct: 78 IQLHG 82
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 58.8 bits (142), Expect = 9e-11
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKES---------- 349
S S+ ++ L V V DA F ++LS+ IQ W G+E+K +
Sbjct: 3 SGSSGTARLVAGLEDVQ-VYDGEDAVFSLDLST-IIQGTWFLNGEELKSNEPEGQVEPGA 60
Query: 350 ARHIITSRGTQRKLVIKRVT-QDDETDIGVLALNVKSVSKL 389
R+ I +G Q +L++ V QD +G V+ + L
Sbjct: 61 LRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAAL 101
Score = 39.6 bits (92), Expect = 5e-04
Identities = 11/106 (10%), Positives = 23/106 (21%), Gaps = 18/106 (16%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-------------GR 188
+ + L+D +S + W+ + +K
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEPGALRY 63
Query: 189 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
I + R + G + S L +Q
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALV---GFSCPGVQDSAALTIQES 106
Score = 35.7 bits (82), Expect = 0.010
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 667 GSPGQAP--LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF- 723
GS G + + E+ V + + S WF N + L S+ + ++
Sbjct: 1 GSSGSSGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVEP 58
Query: 724 ---------DGENIILELKEADSETDAGDYKVVATNELGSAT 756
G L L + SA
Sbjct: 59 GALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAA 100
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 63.2 bits (154), Expect = 2e-10
Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-----KGRNITYENNVA 197
A + + +V C G P P I W + GR + +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT- 442
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V G Y C A N G L V+
Sbjct: 443 -LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 57.0 bits (138), Expect = 1e-08
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 671 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
+ +R ++ V E T++ + + P P+I+W K L+S+ + +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
LE++ A D G Y +A N G+ + A + V
Sbjct: 443 LEVRYA-QVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 54.0 bits (130), Expect = 1e-07
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 531 KYFGFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
+ G P P I W+ ++ R+ + + T+ + D TY A NA G+
Sbjct: 408 RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTLEVRYAQVQDNGTYLCIAANAGGN 466
Query: 590 TSLDLSLQV 598
S+ L V
Sbjct: 467 DSMPAHLHV 475
Score = 32.4 bits (74), Expect = 0.59
Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 408 DSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
+ GR + + V G Y C A N G
Sbjct: 428 SAKSNGRLTVFPDGT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAH 472
Score = 31.2 bits (71), Expect = 1.4
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
TL + + +D G Y +NA G S +
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 61.1 bits (147), Expect = 2e-10
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
+ + L++ D ++ + + + + +VT+
Sbjct: 111 EGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVT 170
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123
W P+ + GY+L K +I T+Y KL Y F++AA + G
Sbjct: 171 WTEPETTE--GLEGYILYKDGK----KVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNG 224
Query: 124 TGPAS 128
+
Sbjct: 225 EVSSK 229
Score = 38.8 bits (89), Expect = 0.004
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 580 TVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
+ N T + G K+ KVA + YT + L + Y
Sbjct: 158 KASEINKKNVTVTWTEPETTEGLEGYILYKDG---KKVAEIGKDETSYTFKKLNRHTIYN 214
Query: 639 FQVFAENSVGLGPEATTELV 658
F++ A+ S G + +
Sbjct: 215 FKIAAKYSNGEVSSKESLTL 234
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 57.4 bits (139), Expect = 2e-10
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TST 99
S P E+V + +S+ + W S V+ Y + + + +S+
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T ++ L+ +Y V A + S
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 48.5 bits (116), Expect = 2e-07
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S V Y I E + T+ S+ T+ L +Y
Sbjct: 15 AATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTIT 74
Query: 641 VFAENSVGLGPEATT 655
V+A S + +
Sbjct: 75 VYAYYSYYDLYYSYS 89
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 57.8 bits (140), Expect = 2e-10
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 33 SATTKVTLLSAP--GAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGY------VLESH 83
S ++ ++ A G P + + S+ + W+ P ++ + + GY
Sbjct: 3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGS 62
Query: 84 DKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ +V K S Y + L +Y V A N GTGP+S
Sbjct: 63 NGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108
Score = 40.0 bits (94), Expect = 4e-04
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 597 QVLGYIIQQQEKNSL----KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
+ GY I +E + + YT++NL+ ++Y V A N G GP
Sbjct: 47 VIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS 106
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 57.1 bits (138), Expect = 2e-10
Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 12/113 (10%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFM 89
+S ++ P + + +V L W+P T Y++
Sbjct: 2 SSGSSG-----PLPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEE 51
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+++ + L +Y V ++ A P
Sbjct: 52 EEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPSSG 104
Score = 39.8 bits (93), Expect = 3e-04
Identities = 6/75 (8%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 586 AAGSTSLDLS----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQV 641
A ++ L+ Y+++ + + + + ++ L +Y V
Sbjct: 19 AVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSV 78
Query: 642 FAENSVGLGPEATTE 656
+
Sbjct: 79 QSLRGPEGSEARGIR 93
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 57.6 bits (139), Expect = 3e-10
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P E+V + +S+ + W P V Y + + + + + +
Sbjct: 27 SVSDVPTKLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKS 82
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T ++ L +Y V AV + A
Sbjct: 83 TATISGLKPGVDYTITVYAVTGLRLMLAG 111
Score = 47.6 bits (113), Expect = 1e-06
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S + V Y I E + T+ S T+ L+ +Y
Sbjct: 39 AATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTIT 98
Query: 641 VFAENSVGLGPEATTELVALAT 662
V+A + L + +
Sbjct: 99 VYAVTGLRLMLAGSKPISINYR 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 61.8 bits (150), Expect = 3e-10
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 6/97 (6%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCK 215
++T+ C + + + +++ N G YTC
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVEDGGVYTCY 319
Query: 216 ATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRK 252
A E S L V + + A
Sbjct: 320 AMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSH 356
Score = 54.8 bits (132), Expect = 4e-08
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
++ + ++ + + + V D YT A + +L
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNG-SVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLS 330
Query: 594 LSLQVLGY 601
+ L+V +
Sbjct: 331 VELKVYNF 338
Score = 49.8 bits (119), Expect = 2e-06
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
T+ + K + +N+ +LS + N L K+
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKV-QVE 311
Query: 740 DAGDYKVVATNELGSATHGARVTV 763
D G Y A E + T + V
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKV 335
Score = 36.4 bits (84), Expect = 0.031
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
W S + S +++ N G YTC A E
Sbjct: 279 WVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVEDGGVYTCYAMGETFNET 328
Score = 34.0 bits (78), Expect = 0.20
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
+ L K + +D G YT + + ++ + + + +D
Sbjct: 298 VRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADP---- 353
Query: 63 HWRPPQDD 70
W PQ +
Sbjct: 354 -WSHPQFE 360
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 56.7 bits (137), Expect = 3e-10
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEV 103
AP + ++ S+ L W P + ++++ +K + + + +Y++
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T L EY + V
Sbjct: 60 TGLKPGTEYTVSIYGVKGGHRSNPLSAE 87
Score = 48.6 bits (116), Expect = 2e-07
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 586 AAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
SL LS ++IQ QE + T+ S Y + L+ +EY
Sbjct: 12 EVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVS 71
Query: 641 VFAENSVGLGPEATTE 656
++ + E
Sbjct: 72 IYGVKGGHRSNPLSAE 87
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 60.7 bits (146), Expect = 3e-10
Identities = 15/140 (10%), Positives = 32/140 (22%), Gaps = 24/140 (17%)
Query: 116 VAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD 175
A +I T V+ V + + +T+ C + +
Sbjct: 108 QVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN 167
Query: 176 IKWYKDDSLIK----------------GRNITYENNVARFTVV--------NCSESSEGR 211
+ WY + + G R + + GR
Sbjct: 168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGR 227
Query: 212 YTCKATNEAGTAETSCTLLV 231
C+ G + + +
Sbjct: 228 VWCELATGQGELDADRSSTI 247
Score = 55.7 bits (133), Expect = 1e-08
Identities = 35/252 (13%), Positives = 63/252 (25%), Gaps = 57/252 (22%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P ISW+K + +K + + + + ++ +Y + + G S+
Sbjct: 31 DTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL-----GFVESDSYKESFGDFLGRASVA 85
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+L+ T V D V ++E+ SV L
Sbjct: 86 -----------NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF---GLDAKSVVL---- 127
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
G + + E V E I + ++ W+
Sbjct: 128 ----------KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF 177
Query: 714 LSSP----------------------KKREIFDGENIILELKEADSETDAGDYKVVATNE 751
+ R F G L ++ A TDAG
Sbjct: 178 ENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR-NLVIRAA-KITDAGRVWCELATG 235
Query: 752 LGSATHGARVTV 763
G T+
Sbjct: 236 QGELDADRSSTI 247
Score = 46.8 bits (110), Expect = 1e-05
Identities = 20/246 (8%), Positives = 41/246 (16%), Gaps = 60/246 (24%)
Query: 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS 434
W G G +S + GR + +
Sbjct: 42 GASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQD 101
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
GRY C+ + E + L + + V
Sbjct: 102 GGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTA------------------ 143
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
+ ++ + + ++W + +
Sbjct: 144 ---------------------EVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 555 CRI---------------------FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+ I + D G D
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
Query: 594 LSLQVL 599
S +L
Sbjct: 243 RSSTIL 248
Score = 28.3 bits (62), Expect = 9.9
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLS 42
+ L I + D G L+ G+ A T+L
Sbjct: 211 GARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 61.4 bits (148), Expect = 3e-10
Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 25/154 (16%)
Query: 91 WNK----IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPV 146
W K E + T V T+++ ++V + + V
Sbjct: 40 WTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL-----IV 94
Query: 147 IQEPLKDSVAGFQSSVTLECVV---SGVPTPDI-----KWYKDDSLIKGRNITYENNVAR 198
+ Q+ V L V G D W K + +I
Sbjct: 95 NITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT--------QD 146
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
T+ + G YT K E+ + S + +
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIM 180
Score = 56.4 bits (135), Expect = 1e-08
Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 37/254 (14%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP----DTPEIVGRSD 57
E ++ATLT+ ++ G Y +++ + S ++V L+ + S
Sbjct: 48 ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQ 107
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRV 116
+ V LH G +P Y L S K E ++ T+ + + T ++ V
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----DTTQDITIQEFTADKNGVYTV 162
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-------- 168
AS +T ++ A + V Q+ ++ + ++L VV
Sbjct: 163 KVWGESEDSAASAST--KIMLATM----NVDQDVVESKTVALGNEISLNYVVSEDIVGDS 216
Query: 169 SGVPTPDIK--WYKDD------SLIKGRNITYENNVA-----RFTVVNCSESSEGRYTCK 215
SG+P IK WY +LI + + + ++ C
Sbjct: 217 SGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCV 276
Query: 216 ATNEAGTAETSCTL 229
A + + +
Sbjct: 277 AKLYQQIEDETVEV 290
Score = 54.4 bits (130), Expect = 5e-08
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSG-VPTPD---IKWYKDDSLIKGRNITYENNVARF 199
A + TL V+G P P W KDD + N A
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATL 54
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
TV + + + G Y + + +
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFL 86
Score = 46.0 bits (108), Expect = 2e-05
Identities = 31/270 (11%), Positives = 72/270 (26%), Gaps = 53/270 (19%)
Query: 540 ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+W K+ ++ T+T+ + + +Y VT + TS++ + ++
Sbjct: 38 YTWTKDDQPHENN----------TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM 87
Query: 600 GYIIQQQEKNSLKFTKVATLDPSTLQ---------------------------------Y 626
+ V++ L
Sbjct: 88 EEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI 147
Query: 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686
T++ + V + + + LAT + E ++
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNV-DQDVVESKTVALGNEISLNY 206
Query: 687 KGTIRLMAKVKASPAPSIV--WFRNNK----PLLSSPKKREIFDGENIILE---LKEADS 737
+ ++ P +I W+ + P L + E +G +I + KE+ +
Sbjct: 207 VVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESAT 266
Query: 738 ETDAGDYKVVATNELGSATHGARVTVDVEK 767
D + VA V +
Sbjct: 267 YDDTAKFWCVAKLYQQIEDETVEVAASTSR 296
Score = 43.3 bits (101), Expect = 2e-04
Identities = 30/224 (13%), Positives = 53/224 (23%), Gaps = 56/224 (25%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
KDD + N A TV + + + G Y + + + ++
Sbjct: 41 TKDDQPHEN-------NTATLTVADATSENAGSYKVTVQDTDTMTSVES-----EVFLME 88
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+P V + V + + P
Sbjct: 89 EAELIVNITEPQHFYVSSQTDVELHATVKFSGG---KTPADN------------------ 127
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
SW K I T I I YTV
Sbjct: 128 -----------YELHYSWSKGEDVID-----------TTQDITIQEFTADKNGVYTVKVW 165
Query: 585 NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628
+ ++ S +++ + + T VA + +L Y V
Sbjct: 166 GESEDSAASASTKIMLATMNVDQDVVESKT-VALGNEISLNYVV 208
Score = 36.3 bits (83), Expect = 0.035
Identities = 30/214 (14%), Positives = 57/214 (26%), Gaps = 46/214 (21%)
Query: 396 SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
S K + +I T+ + G YT K E+ +
Sbjct: 126 DNYELHYSWSKGEDVIDTT--------QDITIQEFTADKNGVYTVKVWGESEDSAASA-- 175
Query: 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNL 515
S + + M + +L + +V +
Sbjct: 176 -----STKI--------MLATMNVDQDVVESKTVALGNEISLN-----YVVSEDIVGDSS 217
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
L++K W ++ + G P + + G + F + S D
Sbjct: 218 GMPNLTIKYNWYLQRE--GQLSPTLIGSEVGEALEG------FSITPDGHLFKESATYDD 269
Query: 576 TSTYTVTAT----------NAAGSTSLDLSLQVL 599
T+ + A A STS S++V+
Sbjct: 270 TAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVV 303
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 56.6 bits (137), Expect = 3e-10
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEV 103
P S+ + W PQ V+ Y + S + ++ + T E+
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNT 131
L EY V A++ T
Sbjct: 60 QGLRPGSEYTVSVVALHDDMESQPLIGT 87
Score = 44.7 bits (106), Expect = 5e-06
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
S+ ++ QV Y + D ++ LR SEY V
Sbjct: 14 DVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVV 73
Query: 643 AENSVGLGPEATT 655
A +
Sbjct: 74 ALHDDMESQPLIG 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 62.1 bits (151), Expect = 4e-10
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
APVI EP D + L+C S + W + G +T+ R V+
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPN----GTVMTHGAYKVRIAVL 394
Query: 203 --------NCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
N + G YTC +N G S TL V G
Sbjct: 395 SDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 54.4 bits (131), Expect = 9e-08
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 536 PRPEISWMK-NGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+SW+ NG +T + RI + + T+ +V DT YT +N+ G+T+
Sbjct: 368 SLTSVSWITPNGTVMTHGAYKVRIAVLSD-GTLNFTNVTVQDTGMYTCMVSNSVGNTTAS 426
Query: 594 LSLQVLGY 601
+L V G
Sbjct: 427 ATLNVTGT 434
Score = 52.1 bits (125), Expect = 4e-07
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-IFDGENII 729
AP+ +E + V E L + ++ S+ W N +++ + I +
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + D G Y + +N +G+ T A + V
Sbjct: 399 LNFTNV-TVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 34.0 bits (78), Expect = 0.18
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 413 GRNITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAETRTM 454
G +T+ R V+ N + G YTC +N G
Sbjct: 379 GTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASAT 428
Score = 32.4 bits (74), Expect = 0.57
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP 47
TL +D G YT +SN++G +A+ + +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 61.7 bits (150), Expect = 4e-10
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
AP I + +D L+C P +KW + G +++ + R +V+
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPN----GTVLSHASRHPRISVL 404
Query: 203 --------NCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ S G YTC TN AG + S L V
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 57.1 bits (138), Expect = 1e-08
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-IFDGENII 729
AP ++ + + E L K + P S+ W N +LS + I +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAEL--KCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L +D G Y + TN G++ A + V
Sbjct: 409 LNFSHV-LLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 52.8 bits (127), Expect = 2e-07
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 536 PRPEISWMK-NGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P + W+ NG ++ S+ RI + + T+ V+ +DT YT TN AG+++
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDG-TLNFSHVLLSDTGVYTCMVTNVAGNSNAS 436
Query: 594 LSLQVLGY 601
L V
Sbjct: 437 AYLNVSTA 444
Score = 34.7 bits (80), Expect = 0.11
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 413 GRNITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAETRTM 454
G +++ + R +V+ + S G YTC TN AG +
Sbjct: 389 GTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAY 438
Score = 31.3 bits (71), Expect = 1.4
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
TL D G YT ++N G ++A+ + + +A
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 61.4 bits (148), Expect = 5e-10
Identities = 33/264 (12%), Positives = 66/264 (25%), Gaps = 54/264 (20%)
Query: 128 SHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG 187
+ +V +++ ++Q S+TL +P ++
Sbjct: 90 KEEVQLLVFGLTANSDTHLLQG----------QSLTLTLESPPGSSPSVQCRSPRGKNIQ 139
Query: 188 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITAR 247
T +V G +TC E ++V ++++ +
Sbjct: 140 GGKT-------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA--FQKASSIVYKKE 190
Query: 248 GTQRKLVIKRVTQDD-ETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAV 306
G Q + + T G L + S K + + + +
Sbjct: 191 GEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250
Query: 307 EFLS---KLPSVTLVPH------------LGDATFQVEL-------------------SS 332
+ L LP G +V L +S
Sbjct: 251 KKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTS 310
Query: 333 PDIQVKWLKKGKEIKESARHIITS 356
P + + + KE K S R
Sbjct: 311 PKLMLSLKLENKEAKVSKREKAVW 334
Score = 56.7 bits (136), Expect = 1e-08
Identities = 33/254 (12%), Positives = 66/254 (25%), Gaps = 56/254 (22%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEI---------- 52
+ TL++ + E +D G +T ++ + + +L+ A
Sbjct: 139 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSF 198
Query: 53 -----VGRSDSSVTLHWRPPQDDGHSPVTGYVLE--------SHDKDEFMVWNKIETTST 99
V + S L W+ + + L+ + + K+ T
Sbjct: 199 PLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT 258
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
+ +A G VV++A Q
Sbjct: 259 LPQAL-PQYAGSGNLTLALEAKTGK--LHQEVNLVVMRAT-------------------Q 296
Query: 160 SSVTLECVVSGVPTPDIK--WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
L C V G +P + ++ K R V G + C
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK--------REKAVWVLNPEAGMWQCLL- 347
Query: 218 NEAGTAETSCTLLV 231
+++G + V
Sbjct: 348 SDSGQVLLESNIKV 361
Score = 56.3 bits (135), Expect = 1e-08
Identities = 35/373 (9%), Positives = 82/373 (21%), Gaps = 126/373 (33%)
Query: 396 SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
G + + K + R ++ + N Y C+ ++ +
Sbjct: 40 QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-- 97
Query: 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNL 515
+ + L +L
Sbjct: 98 -----------------------------------------FGLTANSDTHL--LQGQSL 114
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
L+++S P + + + T+++ + D
Sbjct: 115 ---TLTLESP--------PGSSPSVQCRSPRGKNI----------QGGKTLSVSQLELQD 153
Query: 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ T+T T + + VL + S++ Y E
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAF-----------------QKASSIVYKKEG----- 191
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695
V F + + G + A+
Sbjct: 192 ---------EQVEFSFPLA------------------------FTVEKLTGSGELWWQAE 218
Query: 696 VKASPAPSIVWFRNNK--PLLSSPKKREIFDGENIILELKEAD---SETDAGDYKVVATN 750
+S I + NK + + ++ G+ + L L +G+ +
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278
Query: 751 ELGSATHGARVTV 763
+ G + V
Sbjct: 279 KTGKLHQEVNLVV 291
Score = 47.9 bits (113), Expect = 7e-06
Identities = 9/86 (10%), Positives = 20/86 (23%), Gaps = 20/86 (23%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI--------------------KGRNITYENNVARF 199
+V L C S + W + + R ++
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 200 TVVNCSESSEGRYTCKATNEAGTAET 225
+ N Y C+ ++ +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQL 95
Score = 46.3 bits (109), Expect = 2e-05
Identities = 17/179 (9%), Positives = 39/179 (21%), Gaps = 34/179 (18%)
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKL 484
+V G +TC E + + + + + +
Sbjct: 144 LSVSQLELQDSGTWTCTVLQNQKKVEFK-----------IDIVVLAFQKASSIVYKKEGE 192
Query: 485 AVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK 544
V FS+ T ++ + W+ E
Sbjct: 193 QVEFSFPLAFTVEKLTGSGE-------------------LWWQAERASSSKSWITFDLKN 233
Query: 545 NGAEITDSKACRIFIDEETS----TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ + T+ A + T+ G +++L V+
Sbjct: 234 KEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM 292
Score = 45.6 bits (107), Expect = 4e-05
Identities = 30/262 (11%), Positives = 61/262 (23%), Gaps = 63/262 (24%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ + L I + +D Y + + ++ + DT + G S+T
Sbjct: 63 DQGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQG---QSLT 115
Query: 62 L------------HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK 109
L R P+ K T V++L +
Sbjct: 116 LTLESPPGSSPSVQCRSPR-----------------------GKNIQGGKTLSVSQLELQ 152
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQE--------PLKDSVAGFQSS 161
+ + VV+ + +E PL +V S
Sbjct: 153 DSGTWTCTVLQ--NQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 162 VTLECVVSGVPTPD----IKWYKDDSLIKGRNITYENNVAR-------FTVVNCSESSEG 210
L + + +K + + + + G
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 211 RYTCKATNEAGTAETSCTLLVQ 232
T + G L+V
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVM 292
Score = 34.0 bits (77), Expect = 0.19
Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 18/91 (19%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-----------------KREIFDG 725
K+ T+ L + W +N+ + + +R ++D
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSAT 756
N L +K D+ Y ++
Sbjct: 65 GNFPLIIKNL-KIEDSDTYICEVEDQKEEVQ 94
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 61.8 bits (149), Expect = 5e-10
Identities = 44/239 (18%), Positives = 70/239 (29%), Gaps = 25/239 (10%)
Query: 9 TIVKFEDKDLGDY--TISLSNALGQASATTKVTLLSAPGAPDTPEIVG----RSDSSVTL 62
T +K GDY TI+ + G +++ + + PDTPEI+ S S++ L
Sbjct: 45 TSIKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYL 104
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL-------------TTK 109
W + E M K+ T TT
Sbjct: 105 KWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAI 164
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169
H R N +G + V + ++ P +D V S +T CV
Sbjct: 165 HFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFP-QDKVILVGSDITFCCVSQ 223
Query: 170 GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
+ + + LI + + N S S+ T E T
Sbjct: 224 EKVLSALIGHTNCPLIH-----LDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIF 277
Score = 61.0 bits (147), Expect = 8e-10
Identities = 21/146 (14%), Positives = 32/146 (21%), Gaps = 8/146 (5%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
D + I ++ T + P P +
Sbjct: 242 DGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICS 301
Query: 64 WRPPQDDGH--SPVTGYVL---ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
W P + T Y L S S L + Y F + A
Sbjct: 302 WNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNA 361
Query: 119 VNAIGTGPASHN---TRYVVVKAPVD 141
N +G ++ T V P
Sbjct: 362 HNPLGRSQSTILVNITEKVYPHTPTS 387
Score = 53.7 bits (128), Expect = 1e-07
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLS--APGAPDTPEIVGRSDSSVT 61
+S L ++++ ++T++ N LG++ +T V + P P + ++ + ++V
Sbjct: 340 ESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVK 399
Query: 62 LHWRPPQDDGHSPVT---GYVLESHDKDEFMVW-NKIETTSTTYEVTKLTTKHEYMFRVA 117
L W P + + +++ V +E +S + KL Y FR+
Sbjct: 400 LSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIR 459
Query: 118 AVNA 121
Sbjct: 460 CSTE 463
Score = 35.2 bits (80), Expect = 0.085
Identities = 23/171 (13%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVA 117
W+ P G +E ++E T+ ++ L+ +Y +
Sbjct: 10 QVWQCSWKAPSGTGRGTDYEVCIE----QRSRSCYQLE--KTSIKIPALSH-GDYEITIN 62
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
+++ G+ + + + P I L+ S S++ L+ G P
Sbjct: 63 SLHDFGSSTSKFT--LNEQNVSLIPDTPEI---LQLSADFSTSTLYLKWNDRGSVFP--- 114
Query: 178 WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
++I + + ++ +V + G+ T + A C
Sbjct: 115 --HRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECA 163
Score = 29.8 bits (66), Expect = 4.3
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 621 PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+ Q + L ++ Y F + A N +G
Sbjct: 339 NESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTIL 373
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 55.4 bits (134), Expect = 6e-10
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
AP AP ++ SS+TL W D+ VTGY + + + T TT
Sbjct: 3 APTAPTNLASTAQTTSSITLSWTASTDN--VGVTGYDVYN---GTALATT---VTGTTAT 54
Query: 103 VTKLTTKHEYMFRVAAVNAIG-TGPAS 128
++ L Y F V A +A G AS
Sbjct: 55 ISGLAADTSYTFTVKAKDAAGNVSAAS 81
Score = 27.6 bits (62), Expect = 4.3
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 563 TSTIAIYSVVRADTS-TYTVTATNAAGSTS 591
T T A S + ADTS T+TV A +AAG+ S
Sbjct: 49 TGTTATISGLAADTSYTFTVKAKDAAGNVS 78
Score = 27.6 bits (62), Expect = 4.6
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 581 VTATNAAGSTSLDLS-------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633
+ +T A ++S+ LS + V GY + T + T+ L
Sbjct: 10 LAST-AQTTSSITLSWTASTDNVGVTGYDVYNGT------ALATT--VTGTTATISGLAA 60
Query: 634 KSEYYFQVFAENSVG 648
+ Y F V A+++ G
Sbjct: 61 DTSYTFTVKAKDAAG 75
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 61.6 bits (148), Expect = 6e-10
Identities = 60/490 (12%), Positives = 128/490 (26%), Gaps = 57/490 (11%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIV-GRSDSSV 60
E + + I + D G Y L S + + PG + ++ +V
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTV 130
Query: 61 TLHWRPP-----------QDDGHSPV-----TGYVLESHDKDEFMVWNKIETTSTTYEVT 104
T++ + G PV +GYV ++ + + +
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK---DSVAGFQSS 161
+L + A + + N V+K + ++ + +
Sbjct: 191 QLRLSDAGQYLCQAGDDSNS--NKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANV 248
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVV--NCSESSEGRYTCK 215
C S D+ + ++ F+VV + GRY C
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCG 308
Query: 216 ATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKS 275
A ++ E S Q +E I + + + V +
Sbjct: 309 AHSDGQLQEGSPIQAWQLFVNEE--STIPRSPTVVKGVAGSSVA-----------VLCPY 355
Query: 276 VSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDI 335
K ++ E + ++L+ G+ TF V L+ +
Sbjct: 356 NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN--QL 413
Query: 336 QVK-----WLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK-- 388
+ W + I + L + + + +
Sbjct: 414 TSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSY 473
Query: 389 ----LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444
KW + G + + + + + + T+ + + EG Y C
Sbjct: 474 EKYWCKWNNTGCQALPSQDEGPSKAFVNCDE---NSRLVSLTLNLVTRADEGWYWCGVKQ 530
Query: 445 EAGTAETRTM 454
ET +
Sbjct: 531 GHFYGETAAV 540
Score = 55.0 bits (131), Expect = 6e-08
Identities = 70/539 (12%), Positives = 142/539 (26%), Gaps = 121/539 (22%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK-WYKDDS-----LIKGRNITYENNVAR 198
P + K +VT+ C K YK +I N R
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172
Query: 199 FTVV--------------NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHII 244
+ S G+Y C+A +++ + + + L V
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK-------PEPE 225
Query: 245 TARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTP 304
R V L + + K+L R +S E+ K P
Sbjct: 226 LVYEDLRGSVTFHCA-----------LGPEVANVAKFLCRQSSG-ENCDVVVNTLGKRAP 273
Query: 305 AVEFLSKLPSVTLVPHLGDATFQVELSSPDIQ-----------VKWLKKGKEIKESARHI 353
A E + L P D +F V ++ + L++G I+ +
Sbjct: 274 AFE-----GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFV 328
Query: 354 ITSRGTQRKLVIKRVTQDDETDI-----GVLALNVKSVSKLKWLDFGSGGWWFESKYKDD 408
R + + + + ++K + G +S+
Sbjct: 329 NEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVK 388
Query: 409 SLIKGR-NITYENNVARFTVV--NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465
+ +GR ++ E FTV+ + G Y C + T +
Sbjct: 389 AQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEG------ 442
Query: 466 LRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQ 525
P +V + T + P
Sbjct: 443 ---------EPNLKVPGNVTAV---LGETLKVPCHFPC---------------------- 468
Query: 526 WKVEVKYFGFPRPEISWMKNGAEI---TDSKACRIFI----DEETSTIAIYSVVRADTST 578
K+ + + W G + D + F+ + ++ + V RAD
Sbjct: 469 -----KFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 579 YTVTA-TNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
Y + + + V ++++ + +A D + + +++ + E
Sbjct: 524 YWCGVKQGHFYGETAAVYVAV-----EERKAAGSRDVSLAKADAAPDEKVLDSGFREIE 577
Score = 46.9 bits (110), Expect = 2e-05
Identities = 31/272 (11%), Positives = 71/272 (26%), Gaps = 39/272 (14%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDT-----PEIVGRS 56
++ S ++ I +D G Y + + T + G +
Sbjct: 286 KDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA 345
Query: 57 DSSVTLH------WRPP-----QDDGHSPVTGYVLESHDKDE-------FMVWNKIETTS 98
SSV + +G +L + + + +
Sbjct: 346 GSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGT 405
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
T + +LT++ + T + ++ P + L +++
Sbjct: 406 FTVILNQLTSRDAGFYWCLTNG--DTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETL--- 460
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDSLIK--------GRNITYENNVARFTVV--NCSESS 208
+ C S KW + + N ++ + +
Sbjct: 461 KVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRAD 520
Query: 209 EGRYTCKATNEAGTAET-SCTLLVQGKEIKES 239
EG Y C ET + + V+ ++ S
Sbjct: 521 EGWYWCGVKQGHFYGETAAVYVAVEERKAAGS 552
Score = 45.0 bits (105), Expect = 9e-05
Identities = 39/448 (8%), Positives = 93/448 (20%), Gaps = 115/448 (25%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVV--------------NCSESSEGRYTCKATN 444
+ + +I N R + S G+Y C+A +
Sbjct: 147 LYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGD 206
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
++ + L+ + + + + +
Sbjct: 207 DSNSN-----------KKNADLQVLKPEPELVYEDLRGSVTFHCALGPE----------- 244
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI----D 560
V + K + ++ G + RI +
Sbjct: 245 -----------------VANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-RILLNPQDK 286
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI------------IQQQEK 608
+ + ++ I + + D Y A + ++ ++
Sbjct: 287 DGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAG 346
Query: 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668
+S+ S + ++ G ++L G+
Sbjct: 347 SSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE-GWVKAQYEGRLSLLEEPGNGT 405
Query: 669 ---------------------------------PGQAPLFIERFEEKTVKEKGTIRL--- 692
+ ++ T T+++
Sbjct: 406 FTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCH 465
Query: 693 -MAKVKASPAPSIVWFRNNKPLLSSPKKRE-----IFDGENIILELKEAD-SETDAGDYK 745
K + W L S + D + ++ L + D G Y
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525
Query: 746 -VVATNELGSATHGARVTVDVEKVGRPS 772
V T V V+ K
Sbjct: 526 CGVKQGHFYGETAAVYVAVEERKAAGSR 553
Score = 35.0 bits (79), Expect = 0.10
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 22/109 (20%)
Query: 160 SSVTLEC---VVSGVPTPDIKWYKD------DSLIKGRNITYENNVARFTVVNCSESS-- 208
+SV++ C S W + +LI R + N E+
Sbjct: 16 NSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTF 75
Query: 209 -----------EGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITA 246
GRY C + +L V + + T
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTV 124
Score = 31.1 bits (69), Expect = 1.8
Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 40/194 (20%)
Query: 412 KGR-NITYENNVARFTV--VNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468
GR N+T F V S+ GRY C +
Sbjct: 61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLE------------ 108
Query: 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528
+ P K+ +T T N ++ Q KS +K
Sbjct: 109 ---VSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQ---------------KRKSLYKQ 150
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFID---EETSTIAIYSVVRADTSTYTVTATN 585
G + + R+ I + ++ I + +D Y A +
Sbjct: 151 I----GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGD 206
Query: 586 AAGSTSLDLSLQVL 599
+ S + LQVL
Sbjct: 207 DSNSNKKNADLQVL 220
Score = 30.4 bits (67), Expect = 2.7
Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 18/120 (15%)
Query: 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR 720
+ Q P + + TV T+ + K A L
Sbjct: 101 LSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVID 160
Query: 721 EIF-----------------DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + + +DAG Y A ++ S A + V
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL-RLSDAGQYLCQAGDDSNSNKKNADLQV 219
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 55.9 bits (134), Expect = 9e-10
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 13/103 (12%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI--KWYKDDSLIKGRNITYENNVAR 198
D P I + A S V+ C + + W D+ ++ + ++
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 199 F-----------TVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+ N +SEG Y C +N G++ + L
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 47.4 bits (112), Expect = 9e-07
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREI-------- 722
P + E ++ + +S + W +N+ L + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVD 764
IL L+ T G Y+ V +N GS+ A +T++
Sbjct: 71 LMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 36.6 bits (84), Expect = 0.005
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 529 EVKYFGFPRPEIS--WMKNGAEITDSKACRIF--------IDEETSTIAIYSVVRADTST 578
++ W + + D++ + E T+ + + +V
Sbjct: 31 TCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGX 90
Query: 579 YTVTATNAAGST 590
Y +N GS+
Sbjct: 91 YQCVISNHFGSS 102
Score = 28.5 bits (63), Expect = 3.8
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARF------TVVNCSESSEGRYTCKATNEAGTAETR 452
W +++ D+ ++ + N +SEG Y C +N G++ +
Sbjct: 46 WXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 58.1 bits (140), Expect = 1e-09
Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 53/214 (24%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
++V L + WYK ++ + I ARF + + Y
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEI------ARFVPNSNMNFTGQAY------- 61
Query: 220 AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279
S R II + G+ L+ + +T D GV L++ +
Sbjct: 62 -------------------SGREIIYSNGS---LLFQMITMKDM---GVYTLDMTDEN-- 94
Query: 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKW 339
++T F + + P ++ + T V L T + ++W
Sbjct: 95 ------YRRTQATVRFHVHQPVTQPFLQ-----VTNTTVKELDSVTLTCLSNDIGANIQW 143
Query: 340 LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
L + ++ + R ++ L I + ++D
Sbjct: 144 LFNSQSLQLTERMTLSQNN--SILRIDPIKREDA 175
Score = 55.1 bits (132), Expect = 1e-08
Identities = 27/189 (14%), Positives = 49/189 (25%), Gaps = 52/189 (27%)
Query: 412 KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADT 471
GR I Y N F + G YT T+E T + V
Sbjct: 62 SGREIIYSNGSLLFQ--MITMKDMGVYTLDMTDENYRRTQAT------VRFHVHQPVTQP 113
Query: 472 RVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK 531
++ V + +V + +
Sbjct: 114 FLQVTNTTVKELDSVTLTCLS--------------------------------------- 134
Query: 532 YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-T 590
I W+ N + ++ R+ + + S + I + R D Y +N
Sbjct: 135 --NDIGANIQWLFNSQSLQLTE--RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR 190
Query: 591 SLDLSLQVL 599
S + L ++
Sbjct: 191 SNSIKLDII 199
Score = 53.5 bits (128), Expect = 3e-08
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
+ TVKE ++ L +I W N++ L + R
Sbjct: 100 ATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSN-DIGANIQWLFNSQSLQLTE--RM 156
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVDV 765
N IL + E DAG+Y+ +N + + ++ +
Sbjct: 157 TLSQNNSILRIDPIKRE-DAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 47.4 bits (112), Expect = 5e-06
Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 12/177 (6%)
Query: 61 TLHW-RPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVA 117
W + + +V S+ ++ E ++ + +T K ++ +
Sbjct: 30 AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
+ V+ V + ++ SVTL C+ + + +I+
Sbjct: 90 MTDENYR------RTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQ 142
Query: 178 WYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232
W + SL +T N + + G Y C+ +N + S L +
Sbjct: 143 WLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199
Score = 32.7 bits (74), Expect = 0.27
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 17/117 (14%)
Query: 530 VKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIA----------------IYSVVR 573
V +W K D + R + + +
Sbjct: 21 VHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM 80
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVEN 630
D YT+ T+ + +++ + Q + T V LD TL +
Sbjct: 81 KDMGVYTLDMTDENYRRTQA-TVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND 136
Score = 30.4 bits (68), Expect = 1.8
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
W F S+ SL +T N + + G Y C+ +N + ++
Sbjct: 143 WLFNSQ----SLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI 194
Score = 29.6 bits (66), Expect = 2.7
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS------SPKKREIFDGE---------- 726
V E + L+ + W++ N + P F G+
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
N L + + D G Y + T+E T + V +P + +
Sbjct: 70 NGSLLFQMI-TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT 120
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 55.3 bits (133), Expect = 1e-09
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTS 98
+ P E+V + +S+ + W + Y + + + +
Sbjct: 1 MGVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPV 56
Query: 99 TTYEVTKLTTKHEYMFRVAAVN---AIGTGPASHNTRYVVVKAPVDAEAP 145
T ++ L +Y V AV GP +++ + + + + P
Sbjct: 57 HTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
Score = 41.4 bits (97), Expect = 1e-04
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 586 AAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S Y I E + T+ T+ L+ +Y
Sbjct: 14 AATPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTIT 73
Query: 641 VFAENSVGLGPEATTELVALATHATLGSPGQAP 673
V+A + + P
Sbjct: 74 VYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 55.1 bits (133), Expect = 1e-09
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 5/91 (5%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWN-KIETTSTT 100
S P S + + W PV + + + +T+
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATS 61
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L++ Y RV + G
Sbjct: 62 AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGR 92
Score = 44.7 bits (106), Expect = 7e-06
Identities = 10/91 (10%), Positives = 18/91 (19%), Gaps = 10/91 (10%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
+ + V + + + + L + Y +V
Sbjct: 20 SHDAARVFWEGAPRPVRLVRVTYVSSEG-GHSGQTEAPGNATSAMLGPLSSSTTYTVRVT 78
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAP 673
G T T SP P
Sbjct: 79 CLYPGGGSSTLTGR----VTTKKAPSPSSGP 105
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 55.2 bits (133), Expect = 2e-09
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPP---QDDGHSPVTGYVLE-SHDKDEFMVWNKIETTST 99
P + S ++ + W + + Y + + + T+
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+Y VT L Y F V + S
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS 97
Score = 41.7 bits (98), Expect = 9e-05
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
Y ++ + TK + +TL Y V L+ + Y F V
Sbjct: 42 DSRYYTVRWKTNIP-ANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSST 95
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 56.9 bits (137), Expect = 2e-09
Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 27/190 (14%)
Query: 48 DTPEIVGRSDSSVTLHWRPPQDDGHSPV------TGYVLESHDKDEFMVWNKIETTSTTY 101
D+ + G + L+ Q + V E K + + +
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 102 --EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
++ LT + V + GT + + ++ P+I
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGT---RILNKALDLRILEMVSKPMIYWE--------C 110
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S+ TL C V ++K Y+ + ++ + T+ + + CKA N
Sbjct: 111 SNATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKAVNR 162
Query: 220 AGTAETSCTL 229
+
Sbjct: 163 VSQESEMEVV 172
Score = 41.1 bits (96), Expect = 4e-04
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 697 KASPAPSIVWFRNNKPLLSSPKKREIFDG-------ENIILELKEADSETDAGDYKVVAT 749
+ W R + + +K + F N L++K + D+G Y V
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNVTVY 81
Query: 750 NELGSATHGARVTV-DVEKVGRPSIN 774
+ G+ + + +E V +P I
Sbjct: 82 STNGTRILNKALDLRILEMVSKPMIY 107
Score = 41.1 bits (96), Expect = 5e-04
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 161 SVTLEC--VVSGVPTPDIKWYKDDSLI---KGRNITYENNVARFTVVNCS-------ESS 208
+ L +++W + +L+ K + + + A + N
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDD 72
Query: 209 EGRYTCKATNEAGTAETSCTLLVQGKE 235
G Y + GT + L ++ E
Sbjct: 73 SGTYNVTVYSTNGTRILNKALDLRILE 99
Score = 38.8 bits (90), Expect = 0.002
Identities = 10/110 (9%), Positives = 24/110 (21%), Gaps = 22/110 (20%)
Query: 489 SYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548
+ +L+I +P I SN + + E+ +
Sbjct: 87 RILNKALDLRILEMVSKPMIYWECSNAT-----------LTCEVLEGTDVELKLYQGKEH 135
Query: 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ + + + + A N S +
Sbjct: 136 LRSLRQKTMSYQWTN-----------LRAPFKCKAVNRVSQESEMEVVNC 174
Score = 38.4 bits (89), Expect = 0.003
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 536 PRPEISWMKNGAEITDSK-------ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
E+ W + + + K F + I ++ R D+ TY VT + G
Sbjct: 26 DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
Query: 589 STSLDLSLQV 598
+ L+ +L +
Sbjct: 86 TRILNKALDL 95
Score = 34.6 bits (79), Expect = 0.057
Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 12/82 (14%)
Query: 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 741
E L +V + ++ + L S + + +
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL---------RQKTMSYQWTN---LR 152
Query: 742 GDYKVVATNELGSATHGARVTV 763
+K A N + + V
Sbjct: 153 APFKCKAVNRVSQESEMEVVNC 174
Score = 30.7 bits (69), Expect = 1.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
+ L I D G Y +++ + G + L + ++ S+ TL
Sbjct: 59 ANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE--MVSKPMIYWECSNATLT 116
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 55.1 bits (133), Expect = 2e-09
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 32 ASATTKV-TLLSAP-GAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVL-------- 80
S+ + + P AP + + + +HW P + GY +
Sbjct: 1 GSSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 81 -ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ + + + + T + L Y V VN G GPAS
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
Score = 39.7 bits (93), Expect = 5e-04
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 20/90 (22%)
Query: 580 TVTATNAAGSTSLDLS----------LQVLGYII-------QQQEKNSLKFTKVATLDPS 622
V N ST ++ + GY I + K+ T S
Sbjct: 22 RVNVVN---STLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGS 78
Query: 623 TLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
+ L S Y V N G GP
Sbjct: 79 KTHGMLPGLEPFSHYTLNVRVVNGKGEGPA 108
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 59.9 bits (144), Expect = 2e-09
Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 30/205 (14%)
Query: 26 SNALGQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHD 84
G S V T + P P P V S S + L W+PP D + +T Y++
Sbjct: 576 RRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP-NGNITHYLVFWER 634
Query: 85 KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
+ E +++ ++ T + + ++ + + + ++
Sbjct: 635 QAEDSELFELDYCLKGLKLPSRT----WSPPFESEDSQKHNQSEYEDSAGECCSCPKTDS 690
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNC 204
+++E + S + + K R++ V N
Sbjct: 691 QILKELEESSF-----------RKTFEDYLHNVVFVPRPSRKRRSLGD--------VGNA 731
Query: 205 SESSEGRYTCKATNEAGTAETSCTL 229
+ E R K N + S +
Sbjct: 732 GNNEEHRPFEKVVN-----KESLVI 751
Score = 51.8 bits (123), Expect = 7e-07
Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 26/216 (12%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDD--------GHSPVTGYVLE 81
Q+ + D+ + +SS + + G V
Sbjct: 671 NQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGN 730
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + +E + K+ + ++ L Y + A N YV + +
Sbjct: 731 AGNNEEHRPFEKV-VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPE 789
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD---------IKWYKDDSLIKGRNITY 192
A+A I P+ + + V + + + + + T
Sbjct: 790 AKADDIVGPVTHEIFE-NNVVH----LMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTR 844
Query: 193 ENNVARFTVVNCSESSEGRYTCK--ATNEAGTAETS 226
++ S G Y+ + AT+ AG +
Sbjct: 845 KHFALERGCR-LRGLSPGNYSVRIRATSLAGNGSWT 879
Score = 48.0 bits (113), Expect = 1e-05
Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 25/116 (21%)
Query: 55 RSDSSVTLHWRPPQDDGHSPVTGYVL-------------ESHDKDEFMVWNKIE------ 95
S + L W P + G++L + D W ++
Sbjct: 480 TSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLR 539
Query: 96 ------TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+ + L +Y V + ++ + ++ DA P
Sbjct: 540 SNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP 595
Score = 40.7 bits (94), Expect = 0.002
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 18/114 (15%)
Query: 554 ACRIFIDEETSTIAIYSVVR------ADTSTYTVTATNAAGSTSLDLSLQ--------VL 599
AC EE ++A Y R AD VT + + L Q ++
Sbjct: 766 ACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHE-IFENNVVHLMWQEPKEPNGLIV 824
Query: 600 GYIIQQQEKNSLKFTKVAT--LDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
Y + + + T + L Y ++ A + G G
Sbjct: 825 LYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLS-PGNYSVRIRATSLAGNGS 877
Score = 35.7 bits (81), Expect = 0.076
Identities = 5/52 (9%), Positives = 14/52 (26%)
Query: 600 GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ + + + + + LR + Y ++ A N
Sbjct: 723 RSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEE 774
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 54.7 bits (131), Expect = 3e-09
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 160 SSVTLECVVSGVPTPDIKWYKD-------------DSLIKGRNITYENNVARFTVVNCSE 206
+ L C I + + L + ++ T+ +
Sbjct: 24 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 83
Query: 207 SSEGRYTCKATNEAGTAETSCTLLVQGK 234
S +G YTC A++ T + S + V K
Sbjct: 84 SDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEET--------STIAIYSVVRADTSTYTVTATNAA 587
+ +W ++ K + ++ ST+ I V R+D YT A++
Sbjct: 38 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
Query: 588 GSTSLDLSLQVLG 600
+ ++V
Sbjct: 98 MTKKNSTFVRVHE 110
Score = 38.6 bits (89), Expect = 0.001
Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 15/102 (14%)
Query: 683 TVKEKGTIRLMAKVKASPAPSI--VWFRNNKPLLSSPKKREIFDGENI--------ILEL 732
+ + L + I W + ++ L +
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
+ +D G Y A++ L + + V V +P +
Sbjct: 79 DGV-TRSDQGLYTCAASSGLMTKKNSTFVRV----HEKPFVA 115
Score = 34.7 bits (79), Expect = 0.030
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
M++ +TLTI D G YT + S+ L +T V + P
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 31.2 bits (70), Expect = 0.38
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRT 453
T+ + S +G YTC A++ T + T
Sbjct: 77 TIDGVTRSDQGLYTCAASSGLMTKKNST 104
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 54.9 bits (132), Expect = 9e-09
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 94 IETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
E T+++ + + EY + S V + ++Q
Sbjct: 46 SEETNSSLNIVNAKFEDSGEYKCQH------QQVNESEPVYLEVFSDWL-----LLQASA 94
Query: 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG 210
+ + G + L C + +YKD G + Y ++ N + G
Sbjct: 95 EVVMEG--QPLFLRCHGWRNWDVYKVIYYKD-----GEALKYWYENHNISITNATVEDSG 147
Query: 211 RYTCKATNEAGTAETSCTLLVQ 232
Y C S L +
Sbjct: 148 TYYCTGKVWQLD-YESEPLNIT 168
Score = 49.1 bits (117), Expect = 7e-07
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 161 SVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
+VTL C + KW+ + SL + N + +VN G Y C+
Sbjct: 21 NVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------SSLNIVNAKFEDSGEYKCQHQQV 73
Query: 220 AGTAETS 226
+
Sbjct: 74 NESEPVY 80
Score = 42.2 bits (99), Expect = 2e-04
Identities = 22/196 (11%), Positives = 47/196 (23%), Gaps = 66/196 (33%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+ + SL + N + +VN G Y C+ + L
Sbjct: 40 FHNGSLSEETN-------SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWL---- 88
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
++ + V++ +
Sbjct: 89 -------LLQASAEVVMEGQPLFLRCHGWR------------------------------ 111
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
+ ++ + K+G + E I+I + D+ TY T
Sbjct: 112 ---------NWDVYKVIYYKDGEALKYW--------YENHNISITNATVEDSGTYYCTGK 154
Query: 585 NAAGS-TSLDLSLQVL 599
S L++ V+
Sbjct: 155 VWQLDYESEPLNITVI 170
Score = 36.8 bits (85), Expect = 0.010
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 675 FIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 733
+ + + V E + L + ++++++ + L EN + +
Sbjct: 88 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW--------YENHNISIT 139
Query: 734 EADSETDAGDYKVVATNELGSAT-HGARVTV 763
A + D+G Y +TV
Sbjct: 140 NA-TVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 35.6 bits (82), Expect = 0.025
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 15/97 (15%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
W NG+ E S++ I + D+ Y S + L
Sbjct: 33 EVSSTKWFHNGSLSE----------ETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLE 82
Query: 596 LQVLGYIIQQ-----QEKNSLKFTKVATLDPSTLQYT 627
+ ++Q E L + +
Sbjct: 83 VFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVI 119
Score = 35.3 bits (81), Expect = 0.038
Identities = 27/176 (15%), Positives = 40/176 (22%), Gaps = 49/176 (27%)
Query: 313 PSVTLVP-----HLGD-ATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
P V+L P G+ T KW G +E T L
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------TNSSLN 54
Query: 365 IKRVTQDD------ETDIGVLALNVKSVSKLKWLDFGSGGWWFESK-------------- 404
I +D + + V WL +
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWD 114
Query: 405 ------YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
YKD G + Y ++ N + G Y C E+ +
Sbjct: 115 VYKVIYYKD-----GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165
Score = 33.3 bits (76), Expect = 0.16
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 12/75 (16%)
Query: 683 TVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 741
+ + + L S WF N + I + D+
Sbjct: 15 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVN-----------AKFEDS 63
Query: 742 GDYKVVATNELGSAT 756
G+YK S
Sbjct: 64 GEYKCQHQQVNESEP 78
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 52.0 bits (125), Expect = 1e-08
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 40 LLSAPGAPDTPEIVGRS-DSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETT 97
++SAP P V S ++ L W Y ++ S T
Sbjct: 1 MVSAPAFPTGLSAVLDSSGNTANLTWNAAPG-----ANSYNVKRSTKSGGPYTTIATNIT 55
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
ST Y T + T +Y + V+AV+ S
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLNS 86
Score = 42.0 bits (99), Expect = 5e-05
Identities = 13/83 (15%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 581 VTATNAAGSTSLDLS----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
++A + + +L+ Y +++ K+ +T +AT + ++ YT + ++
Sbjct: 11 LSAVLDSSGNTANLTWNAAPGANSYNVKRSTKSGGPYTTIAT-NITSTNYTDTGVATGTK 69
Query: 637 YYFQVFAENSVGLGPEATTELVA 659
YY+ V A ++ + ++
Sbjct: 70 YYYVVSAVSNGVETLNSAEAILQ 92
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 54.6 bits (131), Expect = 2e-08
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 11/119 (9%)
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD 181
I G A + V V AP + I V S L C G P ++ W
Sbjct: 99 ISYGGADYKRITVKVNAPYNKINQRI-----LVVDPVTSEHELTCQAEGYPKAEVIWTSS 153
Query: 182 DS-LIKGRNITYENNVAR--FTV---VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
D ++ G+ T + F V + + ++ + C + L++
Sbjct: 154 DHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
Score = 49.2 bits (117), Expect = 1e-06
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 11/117 (9%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
YK T + I +VD L+ +++ G+P+ E+ W +
Sbjct: 103 GADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAE--------GYPKAEVIWTSSD 154
Query: 547 AEITDSKACRIFIDEETSTIAIYSVVR---ADTSTYTVTATNAAGSTSLDLSLQVLG 600
++ K E + S +R + T + L +
Sbjct: 155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211
Score = 41.9 bits (98), Expect = 3e-04
Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE---- 726
I + L + + P ++W ++ +LS E
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
N+ L+ + T + H A + +
Sbjct: 175 NVTSTLR--INTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 31.1 bits (70), Expect = 1.2
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 27/122 (22%)
Query: 155 VAGFQSSVTLECVVSGVPTPD-----IKWYKDDSLI-----------------KGRNITY 192
V + S++T+EC D + W +D I + R
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 193 ENNVARFTVV----NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARG 248
++ ++ + G Y C + G T+ V K + R ++
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVDPV 130
Query: 249 TQ 250
T
Sbjct: 131 TS 132
Score = 28.0 bits (62), Expect = 9.9
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRTMW--PGLP 459
+ + + ++ + C P LP
Sbjct: 178 STLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP 213
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 54.2 bits (130), Expect = 3e-08
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 14/139 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV-----G 54
+ D+ T V + + + + NALG+ ++ P+ P +
Sbjct: 57 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSE 116
Query: 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE-----TTSTTYEVTKLTTK 109
S + L W P + Y ++ KD W++I +T +++ V L
Sbjct: 117 ELSSILKLTWTNPSIKSV-IILKYNIQYRTKDA-STWSQIPPEDTASTRSSFTVQDLKPF 174
Query: 110 HEYMFRVAAVNAIGTGPAS 128
EY+FR+ + G G S
Sbjct: 175 TEYVFRIRCMKEDGKGYWS 193
Score = 43.8 bits (103), Expect = 7e-05
Identities = 22/182 (12%), Positives = 50/182 (27%), Gaps = 26/182 (14%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYE 102
P P + + W ++ T + L+ +F T T+
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKRDTPTSCT 65
Query: 103 VTKLTTKH-EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
V T V A NA+G + H V P +
Sbjct: 66 VDYSTVYFVNIEVWVEAENALGKVTSDH--INFDPVYKVKPNPP--------------HN 109
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYE-----NNVARFTVVNCSESSEGRYTCKA 216
+++ + W + S+ + Y + + ++ + +++ R +
Sbjct: 110 LSVINSEELSSILKLTW-TNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTV 168
Query: 217 TN 218
+
Sbjct: 169 QD 170
Score = 37.7 bits (87), Expect = 0.008
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLD--PSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L Y IQ + K++ ++++ D + +TV++L+ +EY F++ G G
Sbjct: 136 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 191
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 52.6 bits (126), Expect = 5e-08
Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 25/149 (16%)
Query: 94 IETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
I + +++Y + T EY + + +T V+ V ++Q P
Sbjct: 49 ISSQASSYFIDAATVNDSGEYRCQ-----------TNLSTLSDPVQLEVHIGWLLLQAPR 97
Query: 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG 210
+ L C + + ++ G++ Y ++ + F + + G
Sbjct: 98 WVFKEE--DPIHLRCHSWKNTALHKVTYLQN-----GKDRKYFHHNSDFHIPKATLKDSG 150
Query: 211 RYTCKATNEAGTAETSCTLLVQGKEIKES 239
Y C+ + +S T+ + I ++
Sbjct: 151 SYFCRGLVGSKN-VSSETVNIT---ITQA 175
Score = 45.2 bits (107), Expect = 1e-05
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 161 SVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
SVTL+C + P + +W+ ++SLI + + + + + + G Y C+
Sbjct: 24 SVTLKCQGAYSPEDNSTQWFHNESLISSQA-------SSYFIDAATVNDSGEYRCQTNL 75
Score = 38.7 bits (90), Expect = 0.003
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSL 592
++++++NG + S I D+ +Y + + +S
Sbjct: 115 NTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 593 DLSLQV 598
+++ +
Sbjct: 167 TVNITI 172
Score = 35.2 bits (81), Expect = 0.039
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIV-WFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 741
+V EK ++ L + SP + WF N + S I + D+
Sbjct: 18 SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDA-----------ATVNDS 66
Query: 742 GDYKVVATNELGSATHGARVTVDV 765
G+Y+ S V ++V
Sbjct: 67 GEYRCQTNLSTLSDP----VQLEV 86
Score = 33.7 bits (77), Expect = 0.11
Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 55/187 (29%)
Query: 313 PSVTLVP-----HLGDA-TF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
V L P D+ T Q S D +W I
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYF 57
Query: 365 IKRVTQDD------ETDIGVLALNVKSVSKLKWLDFGSGGWWFESK-------------- 404
I T +D +T++ L+ V+ + WL + W F+ +
Sbjct: 58 IDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA 117
Query: 405 ------YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
++ G++ Y ++ + F + + G Y C+ + +
Sbjct: 118 LHKVTYLQN-----GKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE------ 166
Query: 459 PLSIVVS 465
++I ++
Sbjct: 167 TVNITIT 173
Score = 32.5 bits (74), Expect = 0.32
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 11/96 (11%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENII 729
+ + KE+ I L + + + +N K +
Sbjct: 87 HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD-------- 138
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ +A + D+G Y + + V + +
Sbjct: 139 FHIPKA-TLKDSGSYFCRGLVGSKNVS-SETVNITI 172
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 51.7 bits (124), Expect = 7e-08
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 22/145 (15%)
Query: 92 NKIETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQE 149
N I T + K EY + + P V E V+Q
Sbjct: 44 NLIPTHTQPSYRFKANNNDSGEYTCQTG--QTSLSDPVHLT---------VLFEWLVLQT 92
Query: 150 PLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS 208
P + G ++ L C P + ++++ G++ + + F++ + S
Sbjct: 93 PHLEFQEG--ETIMLRCHSWKDKPLVKVTFFQN-----GKSQKFSHLDPTFSIPQANHSH 145
Query: 209 EGRYTCKATNEAGTAE-TSCTLLVQ 232
G Y C T+ VQ
Sbjct: 146 SGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 39.8 bits (93), Expect = 0.001
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSL 592
P ++++ +NG S T +I + + Y T +S
Sbjct: 112 DKPLVKVTFFQNGKSQKFSH--------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSK 163
Query: 593 DLSLQV 598
+++ V
Sbjct: 164 PVTITV 169
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 683 TVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 741
+E TI L P + +F+N K S + +A + + +
Sbjct: 96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPT--------FSIPQA-NHSHS 146
Query: 742 GDYKVVATNELGSATHGARVTVDV 765
GDY + VT+ V
Sbjct: 147 GDYHCTGNIGYTLFSS-KPVTITV 169
Score = 37.5 bits (87), Expect = 0.007
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 16/86 (18%)
Query: 681 EKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
V ++ ++ L + SP SI WF N + + + F +
Sbjct: 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-----------NNN 61
Query: 740 DAGDYKVVATNELGSATHGARVTVDV 765
D+G+Y S V + V
Sbjct: 62 DSGEYTCQTGQTSLSDP----VHLTV 83
Score = 36.3 bits (84), Expect = 0.017
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 533 FGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
P + I W NG I T + D+ YT + S
Sbjct: 29 ARSPESDSIQWFHNGNLIP----------THTQPSYRFKANNNDSGEYTCQTGQTSLSDP 78
Query: 592 LDLSLQVLGYIIQQ-----QEKNSLKFTKVATLDPSTLQYT 627
+ L++ ++Q QE ++ + D ++ T
Sbjct: 79 VHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVT 119
Score = 32.5 bits (74), Expect = 0.32
Identities = 25/165 (15%), Positives = 44/165 (26%), Gaps = 56/165 (33%)
Query: 314 SVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD- 372
SVTL T Q S ++W G I + + +D
Sbjct: 21 SVTL-------TCQGARSPESDSIQWFHNGNLIPTHTQP----------SYRFKANNNDS 63
Query: 373 -----ETDIGVL----ALNVKS---VSKLKWLDFGSGG-----------------WWFES 403
+T L L V V + L+F G +
Sbjct: 64 GEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTF--- 120
Query: 404 KYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
+++ G++ + + F++ + S G Y C
Sbjct: 121 -FQN-----GKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTL 159
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 53.3 bits (127), Expect = 1e-07
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV-----GRSDSSVTLHWRPPQDDGH 72
+ + + NALG+ ++ P+ P + S + L W P
Sbjct: 171 NIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV 230
Query: 73 SPVTGYVLE--SHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ Y ++ + D + +T T +++ V L EY+FR+ + G G S
Sbjct: 231 -IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Score = 39.4 bits (91), Expect = 0.003
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 160 SSVTLECVVS-------GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
S+ T CV+ V I W + I T N A S +
Sbjct: 20 SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQL 79
Query: 213 TCKATNEAGTAETSCTLLVQ 232
TC + + +
Sbjct: 80 TCNILTFGQLEQNVYGITII 99
Score = 38.7 bits (89), Expect = 0.006
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKV--ATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L Y IQ + K++ ++++ + +TV++L+ +EY F++ G G
Sbjct: 232 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 287
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.9 bits (126), Expect = 2e-07
Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 14/156 (8%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEI-----VGRSDSSVTLHWRPPQD-DG 71
Y +S+ ++++G + T+ PD P V R+ +++ W+ P +
Sbjct: 168 FYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS 227
Query: 72 HSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ L + F W ++ + + ++ ++ A G G S
Sbjct: 228 SFYRLRFELRYRAERSKTFTTWM-VKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE 286
Query: 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLE 165
+ + ++ +P + + + Q+ T +
Sbjct: 287 WSPEAMGTPWTESRSPPAENEVSTPM---QALTTNK 319
Score = 48.7 bits (115), Expect = 4e-06
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 144 APVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
P + + SVTL C V + W + R +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ G Y+C AG + LLV
Sbjct: 66 SVQLHDSGNYSC---YRAGRPAGTVHLLVD 92
Score = 37.1 bits (85), Expect = 0.017
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 590 TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649
S + S L + ++ + + S FT D + + + Q+ A+ G
Sbjct: 223 HSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQH-HCVIHDAWSGLRHVVQLRAQEEFGQ 281
Query: 650 GP 651
G
Sbjct: 282 GE 283
Score = 34.1 bits (77), Expect = 0.17
Identities = 7/100 (7%), Positives = 19/100 (19%), Gaps = 12/100 (12%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+ W+ + + SV D+ Y+ T
Sbjct: 33 PEDNATVHWVLRKPAAGSH---PSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTV-- 87
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633
+++ + + S +
Sbjct: 88 -------HLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRST 120
Score = 33.7 bits (76), Expect = 0.22
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLM-AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
+P + P T ++ L V+ ++ W S P +
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR 61
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATH 757
++ + D+G+Y H
Sbjct: 62 LLLRSV----QLHDSGNYSCYRAGRPAGTVH 88
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 48.7 bits (116), Expect = 3e-07
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 8/84 (9%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVL------ESHDKDEFMVWNKIETTSTTYEVT 104
V + ++V + W + + GY + + + T + +
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 105 KLTTKHEYMFRVAAVNAIGTGPAS 128
L Y +V G S
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDS 104
Score = 40.3 bits (94), Expect = 3e-04
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 585 NAAGSTSLDLSLQ-------VLGYIIQQQEKNSL----KFTKVATLDPSTLQYTVENLRD 633
T++ ++ + GY + ++ + L + + P+ + NL+
Sbjct: 25 VVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKK 84
Query: 634 KSEYYFQVFAENSVGLGPE 652
Y +V + G +
Sbjct: 85 GVTYEIKVRPYFNEFQGMD 103
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 48.6 bits (115), Expect = 3e-07
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFR-NNKPLLSS 716
+ + G+ +F+++ + +V+ ++AKV P+I WF+ L S
Sbjct: 1 GSSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK 60
Query: 717 PKKR----EIFDGENII----LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
R E + + + L + + D G Y++ + + G + V+ +
Sbjct: 61 SGARFSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 43.6 bits (102), Expect = 2e-05
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 15/114 (13%)
Query: 137 KAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYK----DDSLIKGRN 189
+ + V + + V+G P IKW+K + G
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 190 ITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+++ + + V G Y + + + V+
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 35.9 bits (82), Expect = 0.008
Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 12/111 (10%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP---RPEISWMK-NGAEITDSKAC 555
S + + S + V K G +P I W K E+
Sbjct: 4 GSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGA 63
Query: 556 RIFIDEE--------TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
R E T + I VV D Y + S ++ V
Sbjct: 64 RFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 31.3 bits (70), Expect = 0.43
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 8/60 (13%)
Query: 400 WFESKYKDDSLIKGRNITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAET 451
WF+ K+ + G +++ + + V G Y + +
Sbjct: 49 WFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSC 108
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 52.7 bits (125), Expect = 4e-07
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 21 YTISL--SNALGQASATTKVTLLS--APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
+ +L N LGQA + + + AP P + ++ + + VT W P + +
Sbjct: 360 HNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLL 419
Query: 77 G---YVLESHDKDEFMV-WNKIETTSTTYEVTKLTTKHEYMFRVAA 118
+ K+ E ++ V KL Y FRV
Sbjct: 420 CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRC 465
Score = 42.3 bits (98), Expect = 6e-04
Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 8/147 (5%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
T+ I + ++ T V P P +
Sbjct: 246 LYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIIC 305
Query: 63 HWRPPQDDG--HSPVTGYVL---ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVA 117
W P + G T Y L S F + + V + + F +
Sbjct: 306 SWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLT 365
Query: 118 AVNAIGTGPAS---HNTRYVVVKAPVD 141
N +G ++ + T V P
Sbjct: 366 GRNPLGQAQSAVVINVTERVAPHDPTS 392
Score = 31.1 bits (69), Expect = 1.8
Identities = 6/82 (7%), Positives = 19/82 (23%), Gaps = 7/82 (8%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
+ + W P V ++ +T +
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCH------PLETTNVK 56
Query: 103 VTKLTTKHEYMFRVAAVNAIGT 124
+ L+ ++ + +N +
Sbjct: 57 IPALSP-GDHEVTINYLNGFQS 77
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 50.4 bits (120), Expect = 4e-07
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 1/109 (0%)
Query: 127 ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK 186
+ V +A ++ + V L C G P ++ W
Sbjct: 86 VICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPAN 145
Query: 187 GRNITYENNVAR-FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+I + + +V+ ++C N TS + +
Sbjct: 146 TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194
Score = 50.4 bits (120), Expect = 4e-07
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 160 SSVTLECVVSGVPTPDIKWYK--------DDSLIKGRNITYENNVARFTVV----NCSES 207
SSV+LEC +++ + D SL R E + + +
Sbjct: 18 SSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77
Query: 208 SEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKL 253
G+Y C A T+ V+ ++ R + + +L
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Score = 39.6 bits (92), Expect = 0.002
Identities = 21/200 (10%), Positives = 45/200 (22%), Gaps = 61/200 (30%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVV----NCSESSEGRYTCKATNEAGTAETRTM 454
+ D SL R E + + + G+Y C A
Sbjct: 39 ASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYK--- 95
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
+++++ + +
Sbjct: 96 ---------------------------------------YLTVKVKASYMRIDTR----- 111
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR- 573
+ + ++ + G+P E+SW S I + SV+R
Sbjct: 112 --ILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS-----HIRTPEGLYQVTSVLRL 164
Query: 574 --ADTSTYTVTATNAAGSTS 591
+ ++ NA
Sbjct: 165 KPQPSRNFSCMFWNAHMKEL 184
Score = 35.4 bits (81), Expect = 0.035
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEAD 736
V G ++L + + P + W + P +S + +G +L LK
Sbjct: 111 RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTP--EGLYQVTSVLRLK--- 165
Query: 737 SETDAGDYKVVATNELGSATHGARVTV 763
+ ++ + N A +
Sbjct: 166 -PQPSRNFSCMFWNAHMKELTSAIIDP 191
Score = 29.2 bits (65), Expect = 3.6
Identities = 10/62 (16%), Positives = 18/62 (29%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
+ A I + +D G Y + V + ++ DT + V
Sbjct: 62 LPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEV 121
Query: 61 TL 62
L
Sbjct: 122 QL 123
Score = 28.9 bits (64), Expect = 5.9
Identities = 11/95 (11%), Positives = 24/95 (25%), Gaps = 10/95 (10%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS----PKKREIFDGENII-----LELK 733
TV ++ L + R + + + +R E + +
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 734 EADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768
D+G Y+ + V V +
Sbjct: 73 SV-QVRDSGQYRCLVICGAAWDYKYLTVKVKASYM 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 5e-07
Identities = 107/679 (15%), Positives = 179/679 (26%), Gaps = 250/679 (36%)
Query: 221 GTAETSC----TLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSV 276
G+ E +++E I+ + DDE L V
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPE-------PTEGFAADDEP-TTPAEL----V 61
Query: 277 SK-LKWLARWTSDLESTAW-------FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQV 328
K L +++ + + FE+ +L + H
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN------CYLEG-NDI----H----ALAA 106
Query: 329 ELSSPDIQVKWLKKGKEIKE--SARHII---TSRGTQRKLVIKRVTQDDETDIGVLALNV 383
+L + +K + IK +AR + + + L R + + +
Sbjct: 107 KLL-QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF--RAVGEGNAQLVAI---- 159
Query: 384 KSVSKLKWLDFG----SGGWWFESKYKDDSLIKGRNI--TYENNVARFTVV---NCSESS 434
FG + ++ E L R++ TY V SE
Sbjct: 160 ----------FGGQGNTDDYFEE-------L---RDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
+ G L+I+ L P K L L++P S
Sbjct: 200 RTTLDAEKVFTQG------------LNILEWLENPSNT---PDKDYL--LSIPISC---- 238
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
P I ++ Q L+ + V K GF E+ GA
Sbjct: 239 -----------PLIGVI------Q-LA---HYVVTAKLLGFTPGELRSYLKGA------- 270
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-----TSLDLSLQVLGYI---IQQQ 606
T +V A A S S+ ++ VL +I +
Sbjct: 271 ----------TGHSQGLVTA-------VAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 607 EKNSLKFTKVATLDPSTLQYTVEN----------LRDKSEYYFQ--VFAEN--------- 645
+L PS L+ ++EN + + ++ Q V N
Sbjct: 314 -------YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 646 SVGL----------GPEATTELVALATH-----ATLGSPGQA--PLFIERFEEKTVKEKG 688
+ L GP + L L A G Q+ P F ER K K
Sbjct: 367 EISLVNGAKNLVVSGPPQS--LYGLNLTLRKAKAPSGL-DQSRIP-FSER------KLKF 416
Query: 689 TIR-LMAKVKASP--APSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD------SET 739
+ R L P +P F + LL D + D
Sbjct: 417 SNRFL-------PVASP----F--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 740 DAGDYKVVATNELGSATHG-ARVTVDVEKVGRPSINSIDIDL---------NHVHYLAQS 789
D D +V++ + R+ V E + I +D H
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDFGPGGASGLGVLTHRNKDG 522
Query: 790 T--------EVDVTSTDEF 800
T +D+ D++
Sbjct: 523 TGVRVIVAGTLDINPDDDY 541
Score = 49.7 bits (118), Expect = 4e-06
Identities = 75/448 (16%), Positives = 131/448 (29%), Gaps = 171/448 (38%)
Query: 13 FED-KDLGDYTI--SLSNALGQASATTKVTLLSAPGAPDTPEIVGRS-DSSVTLHW---- 64
FE+ +DL Y L L + SA T L+ D ++ + + L W
Sbjct: 170 FEELRDL--YQTYHVLVGDLIKFSAETLSELIRTT--LDAEKVFTQGLNI---LEWLENP 222
Query: 65 --RPPQDD-GHSPVTG----------Y--VLESHDKDEFMVWNKIETTSTTYE--VTKL- 106
P +D P++ Y + + + ++ + + VT +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 107 ----TTKHEYMFRVAAVNAIG----TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
+ F V+ AI G + P + P I L+DS+
Sbjct: 283 IAETDSWES--FFVSVRKAITVLFFIGVRCYEA------YPNTSLPPSI---LEDSLENN 331
Query: 159 QSSVTLECVVSGVPTP-----DIKWYKDDSLIKGRNITY--ENNVARFTVVNCSESSEGR 211
+ GVP+P ++ + + N ++ ++VN
Sbjct: 332 E----------GVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVN-------- 372
Query: 212 YTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLAL 271
A++++ + G + L L
Sbjct: 373 ---------------------------GAKNLVVS-GPPQSLY---------------GL 389
Query: 272 NVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAV--EFLSKLPSVTLVP-H---LGDAT 325
N+ ++ K K A D +S F S+ FL P V P H L A+
Sbjct: 390 NL-TLRKAK--APSGLD-QSRIPF----SERKLKFSNRFL---P-VA-SPFHSHLLVPAS 436
Query: 326 FQVELSSPDIQVKWLKKGKEIKESARHIITSRGT-QRKL---VIKRVTQDDETDIGVLAL 381
+ V + K+I+ T G+ R L + +R+ I L +
Sbjct: 437 DLINKDLVKNNVSF--NAKDIQIPVYD--TFDGSDLRVLSGSISERIVDC----IIRLPV 488
Query: 382 NVKSVSKLKW-----------LDFGSGG 398
W LDFG GG
Sbjct: 489 K--------WETTTQFKATHILDFGPGG 508
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 51.1 bits (121), Expect = 6e-07
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 13/122 (10%)
Query: 20 DYTISL--SNALGQAS------ATTKVTLLSAP---GAPDTPEIVGRSDSSVTLHWRPPQ 68
+ I + NALG + V L P +PE + L W P Q
Sbjct: 174 NMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ 233
Query: 69 DDGHSPVTGYVL--ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
H + + + + + + YE+ L Y ++ + G
Sbjct: 234 PGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGH 293
Query: 127 AS 128
S
Sbjct: 294 WS 295
Score = 42.6 bits (99), Expect = 3e-04
Identities = 21/185 (11%), Positives = 45/185 (24%), Gaps = 12/185 (6%)
Query: 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLH 63
+ +T+ Q ++ P P ++ + SS+
Sbjct: 60 ESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQ 119
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVW---------NKIETTSTTYEVTKLTTKHEYMF 114
W P + T + L+S K + + L
Sbjct: 120 WEPGPETHLP--TSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGI 177
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
V A NA+GT + + ++ +P ++ + L
Sbjct: 178 WVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH 237
Query: 175 DIKWY 179
+
Sbjct: 238 INQKC 242
Score = 34.5 bits (78), Expect = 0.13
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 599 LGYIIQ-QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
++ + ++ + V L LQY + L + Y Q+ G
Sbjct: 240 QKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPG 292
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 49.1 bits (117), Expect = 1e-06
Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 22/144 (15%)
Query: 94 IETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
I + +++Y + T EY + +T V+ V ++Q P
Sbjct: 49 ISSQASSYFIDAATVDDSGEYRCQ-----------TQLSTLSDPVQLEVHIGWLLLQAPR 97
Query: 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG 210
+ L C + + ++ G+ Y ++ + F + + G
Sbjct: 98 WVFKEE--DPIHLRCHSWKNTALHKVTYLQN-----GKGRKYFHHNSDFYIPKATLKDSG 150
Query: 211 RYTCKATNEAGTAE-TSCTLLVQG 233
Y C+ + + + +
Sbjct: 151 SYFCRGLVGSKNVSSETVQITITQ 174
Score = 35.2 bits (81), Expect = 0.041
Identities = 7/68 (10%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSL 592
++++++NG S I D+ +Y + + +S
Sbjct: 115 NTALHKVTYLQNGKGRKYFH--------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 593 DLSLQVLG 600
+ + +
Sbjct: 167 TVQITITQ 174
Score = 34.5 bits (79), Expect = 0.084
Identities = 27/190 (14%), Positives = 47/190 (24%), Gaps = 61/190 (32%)
Query: 313 PSVTLVP-----HLGDA-TF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
V L P D+ T Q S D +W I
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ----------ASSYF 57
Query: 365 IKRVTQDD------ETDIGVL----ALNVKSVSKLK-------------------WLDFG 395
I T DD +T + L L V L W +
Sbjct: 58 IDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA 117
Query: 396 SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
+ ++ G+ Y ++ + F + + G Y C+ + +
Sbjct: 118 LHKVTY---LQN-----GKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE--- 166
Query: 456 PGLPLSIVVS 465
+ I ++
Sbjct: 167 ---TVQITIT 173
Score = 33.7 bits (77), Expect = 0.14
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 681 EKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
KE+ I L + A + + +N K N + +A +
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKA-TLK 147
Query: 740 DAGDYKVVATNELGSATHGARVTVDV-EKVGRPSINSI 776
D+G Y + + V + + + + +I+S
Sbjct: 148 DSGSYFCRGLVGSKNVS-SETVQITITQGLAVSTISSF 184
Score = 32.2 bits (73), Expect = 0.41
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIV-WFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 741
V EK ++ L + SP WF N + S I A + D+
Sbjct: 18 RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFID-----------AATVDDS 66
Query: 742 GDYKVVATNELGSATHGARVTVDV 765
G+Y+ S V ++V
Sbjct: 67 GEYRCQTQLSTLSDP----VQLEV 86
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 49.0 bits (116), Expect = 2e-06
Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 13/122 (10%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV---------GRSDSSVTLHWRPPQ 68
I + N LG + + + P + + L W+P +
Sbjct: 80 YMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWK 139
Query: 69 DDGHSPVTGYV--LESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
+ + + + + ++ +E+ L Y ++ + + G
Sbjct: 140 PSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGF 199
Query: 127 AS 128
S
Sbjct: 200 WS 201
Score = 43.3 bits (101), Expect = 1e-04
Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 15/146 (10%)
Query: 47 PDTPEIVG----RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWN---------K 93
P +P + + +S+ W P + T ++L+S + K
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 94 IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKD 153
+ + L V A N +G+ + + ++ + D
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 154 SVAGFQSSVTLECVVSGVPTPDIKWY 179
V+ + L +
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQEC 148
Score = 32.1 bits (72), Expect = 0.45
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 598 VLGYIIQ-QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
++ Q + +T V L S Q+ + L Y Q+ S G
Sbjct: 145 EQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPG 198
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 50.2 bits (119), Expect = 2e-06
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 9 TIVKFEDKDLGDYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV---GRSDSSVTLH 63
E D D+ I + S+ ++ L P P + S + L
Sbjct: 198 RFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLK 257
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123
W P + Y +E + D + TY + + F V + I
Sbjct: 258 WSIPLGPIPARCFDYEIEIREDDT--TLVTATVENETYTLKTTNETRQLCFVVRSKVNIY 315
Query: 124 TGPASH 129
Sbjct: 316 CSDDGI 321
Score = 42.1 bits (98), Expect = 5e-04
Identities = 38/243 (15%), Positives = 68/243 (27%), Gaps = 23/243 (9%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP--QDDGHSPVTGY 78
YT +S G S++ ++ P D + + L W+PP D Y
Sbjct: 12 YTFLISTTFGCTSSSDTEIKVNPP--QDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEY 69
Query: 79 VLESHDKDEFMVWNKIETTSTTYE-VTKLTTKHEYMFRVAAVNA--IGTGPASHNTRYVV 135
L+ + W I T + Y+ L E G+ S
Sbjct: 70 ELKYRNIGS-ETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTY 128
Query: 136 VKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-----VVSGVPTPDIKWYKDDSLIKGRNI 190
+P +Q D + + L C + + T +Y + L
Sbjct: 129 WISPQGIPETXVQ----DMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQC 184
Query: 191 ------TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHII 244
+N RF + S+ + ++E +S +K +
Sbjct: 185 VDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYL 244
Query: 245 TAR 247
T
Sbjct: 245 TFT 247
Score = 35.9 bits (82), Expect = 0.053
Identities = 16/156 (10%), Positives = 38/156 (24%), Gaps = 25/156 (16%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM------VWNKIETT 97
+ V + + W+P + ++ + + +
Sbjct: 137 ETXVQDMDCVYYNWQYLLCSWKPGIG-VLLDTNYNLFYWYEGLDHALQCVDYIKADGQNI 195
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
+ + + ++ V + +S+ ++ V PV
Sbjct: 196 GCRFPYLEASDYKDFYICVNGSSENKPIRSSY--FTFQLQNIVKPLPPVY---------- 243
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE 193
+T S +KW I R YE
Sbjct: 244 ----LTFTRESSCEIK--LKWSIPLGPIPARCFDYE 273
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 47.6 bits (113), Expect = 3e-06
Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 35/195 (17%)
Query: 48 DTPEIVGRSDSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWN-------KI 94
P + + S+VTL + +T +LE + V+ +
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
+ T+ + ++ + + + ++ + V V P+I
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHE----TEDQWKITMEVYEMV--SKPMI------Y 112
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 214
S+ TL C V ++K Y+ ++ ++ + T+ + + C
Sbjct: 113 WEC--SNATLTCEVLEGTDVELKLYQGKEHLR--------SLRQKTMSYQWTNLRAPFKC 162
Query: 215 KATNEAGTAETSCTL 229
KA N +
Sbjct: 163 KAVNRVSQESEMEVV 177
Score = 35.2 bits (81), Expect = 0.033
Identities = 9/101 (8%), Positives = 21/101 (20%), Gaps = 22/101 (21%)
Query: 491 KTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550
+++ +P I SN L+ + E+ + +
Sbjct: 94 DQWKITMEVYEMVSKPMIYWECSNA---TLTCEVLEG--------TDVELKLYQGKEHLR 142
Query: 551 DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
+ + + A N S
Sbjct: 143 -----------SLRQKTMSYQWTNLRAPFKCKAVNRVSQES 172
Score = 30.6 bits (69), Expect = 1.1
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 12/78 (15%)
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745
E L +V + ++ + L S + + +K
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEHLRS---------LRQKTMSYQ---WTNLRAPFK 161
Query: 746 VVATNELGSATHGARVTV 763
A N + + V
Sbjct: 162 CKAVNRVSQESEMEVVNC 179
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 45.2 bits (106), Expect = 4e-06
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNV--ARFTVVNCS 205
Q P K S++G ++V L C P +I W +D I G ++ S
Sbjct: 12 QTPYKVSISG--TTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS 67
Query: 206 ESSE-GRYTCKATNEAGTAETSCTLL 230
E + G Y C L
Sbjct: 68 ELEQSGYYVCYPRGSKPEDANFYLYL 93
Score = 34.4 bits (78), Expect = 0.030
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
V GT ++ P I+W N+K + + I E+ L LKE
Sbjct: 13 TPYKVSISGT-TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDED-HLSLKEFSELE 70
Query: 740 DAGDYKVVATNELGSA 755
+G Y
Sbjct: 71 QSGYYVCYPRGSKPED 86
Score = 29.4 bits (65), Expect = 1.3
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGSTS 591
P EI W N I + + I + +++ + S Y + +
Sbjct: 32 PGSEILWQHNDKNIGGDEDDKN-IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 47.9 bits (113), Expect = 5e-06
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 20 DYTISLSNALGQASATTKVTLLSAPGAPDTPEIV---GRSDSSVTLHWRPPQDDGHSPVT 76
+ + L + T++ L P PE + S+S + L+W +
Sbjct: 110 TFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCL 166
Query: 77 GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++++ + + + + + + Y FRV + G A H
Sbjct: 167 EHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQH 219
Score = 28.2 bits (62), Expect = 9.9
Identities = 7/56 (12%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
L +++Q + +T+ + ++++ ++ + Y F+V + + G
Sbjct: 164 HCLEHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSA 217
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 45.0 bits (106), Expect = 6e-06
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 11/102 (10%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDG------HSPVTGYVLESHDK 85
+S ++ + + + SS+ L+W P + LE H +
Sbjct: 2 SSGSSG-----SRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPR 56
Query: 86 DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPA 127
+ T + + L + Y + + +
Sbjct: 57 PLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS 98
Score = 30.7 bits (69), Expect = 0.53
Identities = 6/83 (7%), Positives = 23/83 (27%), Gaps = 13/83 (15%)
Query: 587 AGSTSLDLSLQ-----VLGYIIQ--------QQEKNSLKFTKVATLDPSTLQYTVENLRD 633
++SL L+ + ++++ + + + + + +LR
Sbjct: 20 VTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRS 79
Query: 634 KSEYYFQVFAENSVGLGPEATTE 656
+ Y ++
Sbjct: 80 GTLYSLTLYGLRGPHKADSIQGT 102
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 44.9 bits (106), Expect = 6e-06
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 14/104 (13%)
Query: 143 EAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTV 201
+ Q PL +V + + L C V ++W + R +
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 202 V------------NCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
V + S S EG+YTC + L V G
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106
Score = 32.5 bits (74), Expect = 0.14
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-- 724
GS GQ PL + TV E GT L +V + S+ W + L K+ + D
Sbjct: 5 GSQGQFPLT----QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60
Query: 725 -------GENIILELKEADSETDAGDYK-VVATNELGSATHGARVTVDV 765
+ + + + +D G Y + T + ++ A +TV
Sbjct: 61 IELVRASWHELSISVSDVS-LSDEGQYTCSLFTMPVKTSK--AYLTVLG 106
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 47.6 bits (112), Expect = 7e-06
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPV--TGYVLESHDKDEFMVWNKI----ETTSTT 100
P V + + L W + V L+ + + W +I +T
Sbjct: 205 PPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQ 264
Query: 101 YEVTK-LTTKHEYMFRVAAVNAIGTGPAS 128
+ + K Y+ RV A + T S
Sbjct: 265 CVFPQNVFQKGIYLLRVQASDGNNTSFWS 293
Score = 38.4 bits (88), Expect = 0.007
Identities = 13/158 (8%), Positives = 36/158 (22%), Gaps = 17/158 (10%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLT-----TKHE 111
D + L W + + + + + T + E
Sbjct: 16 DDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEE 73
Query: 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
R+ A + ++ P + + ++ + +S
Sbjct: 74 IKLRIRAEKENTSSWYEVDS--------FTPFRKAQIGPPEVHLEAEDKAIVIH--ISPG 123
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209
+ W D + ++N+ + S
Sbjct: 124 TKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRH 161
Score = 36.8 bits (84), Expect = 0.019
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 53 VGRSDSSVTLHWRPPQDDG-----HSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLT 107
+ D ++ +H P D Y L V +IE + +++ KL+
Sbjct: 109 LEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSS-GVEERIENIYSRHKIYKLS 167
Query: 108 TKHEYMFRVAAVNAIGTGP 126
+ Y +V A
Sbjct: 168 PETTYCLKVKAALLTSWKI 186
Score = 31.0 bits (69), Expect = 1.5
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTV--ENLRDKSEYYFQVFAENSVGLGPEATT 655
+ ++ + + K+ ++ + V +N+ K Y +V A + +
Sbjct: 236 LHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE 295
Query: 656 ELVALATHATL 666
A L
Sbjct: 296 IKFDTEIQAFL 306
Score = 29.1 bits (64), Expect = 6.1
Identities = 11/127 (8%), Positives = 34/127 (26%), Gaps = 4/127 (3%)
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTAT-NAAGSTSLDLSLQVLGYIIQQQEKNS 610
+ + + A+ + + S L Y + + +S
Sbjct: 89 YEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSS 148
Query: 611 LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670
++ + ++ + L ++ Y +V A + + + T P
Sbjct: 149 GVEERI---ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 205
Query: 671 QAPLFIE 677
+ +
Sbjct: 206 PENIEVS 212
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 46.3 bits (109), Expect = 9e-06
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 20 DYTISLSNALGQASATTKVTLLSAPGAPDTPEIV---GRSDSSVTLHWRPPQDDGHSPVT 76
+ + L + T++ L P PE + S+S + L+W +
Sbjct: 72 TFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCL 128
Query: 77 GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++++ + + + + + + Y FRV + G A H
Sbjct: 129 EHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQH 181
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 46.0 bits (108), Expect = 1e-05
Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 20/145 (13%)
Query: 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES 207
K S++G +SV L C + ++KW K+ + ++ + + + SE
Sbjct: 5 NIEYKVSISG--TSVELTCPLD--SDENLKWEKNGQELPQKHDKH------LVLQDFSEV 54
Query: 208 S-EGRYTCKATNEAGTAETSCTLLV--------QGKEIKESARHIITARGTQRKLVIKRV 258
G Y C V + ++ + G+Q V
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114
Query: 259 TQDDETDIGVLALNVKSVSK-LKWL 282
D G + L K +KWL
Sbjct: 115 QVDGSRGDGSVLLTCGLTDKTIKWL 139
Score = 43.3 bits (101), Expect = 7e-05
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
RV + + A + ++ + ++ + SV L C G+
Sbjct: 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDK 134
Query: 175 DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
IKW KD S+I + + N ++ G Y C+ E
Sbjct: 135 TIKWLKDGSIIS----PLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
Score = 38.3 bits (88), Expect = 0.004
Identities = 21/222 (9%), Positives = 49/222 (22%), Gaps = 65/222 (29%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ W KNG E+ + + + + D+ Y + +T L L
Sbjct: 25 SDENLKWEKNGQELPQKHDKHLVLQDFSEV--------EDSGYYVCYTPASNKNTYLYLK 76
Query: 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+V + D + Q ++
Sbjct: 77 ARV---------------GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNL-------- 113
Query: 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS 715
+ + G++ L +I W ++ +
Sbjct: 114 -----------------------VQVDGSRGDGSVLLTCG---LTDKTIKWLKDGSIISP 147
Query: 716 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 757
+ ++ N + G Y+ E +
Sbjct: 148 LNATKNTWNLGNNAKD--------PRGTYQCQGAKETSNPLQ 181
Score = 36.0 bits (82), Expect = 0.022
Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 9/80 (11%)
Query: 698 ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 757
++ W +N + + + L L++ D+G Y +
Sbjct: 23 LDSDENLKWEKNGQE---------LPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYL 73
Query: 758 GARVTVDVEKVGRPSINSID 777
+ V + D
Sbjct: 74 YLKARVGSADDAKKDAAKKD 93
Score = 33.7 bits (76), Expect = 0.11
Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 45/195 (23%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESS-EGRYTCKATNEAGTAETRTMWPGLPLSIV 463
K+ + ++ + + + SE G Y C ++ +
Sbjct: 32 EKNGQELPQKHDKH------LVLQDFSEVEDSGYYVCYTPASNKN---TYLYLKARVGSA 82
Query: 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523
+K + K + + A LV + SV
Sbjct: 83 DDAKKDAAKKDDAKKD----------------DAKKDGSQTNKAKNLVQVDGSRGDGSVL 126
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
G I W+K+G+ I+ ++ +T + + + TY
Sbjct: 127 LT-------CGLTDKTIKWLKDGSIIS-------PLNATKNTWNLGNNAKDPRGTYQCQG 172
Query: 584 TNAAGSTSLDLSLQV 598
+ LQV
Sbjct: 173 AKETSNP-----LQV 182
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 44.4 bits (104), Expect = 1e-05
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 16/129 (12%)
Query: 31 QASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHS-----PVTGYVLE 81
S+ + + L A G P P+ V G + +++ + WRPP VTGY +
Sbjct: 3 SGSSGVEFSTLPA-GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVY 61
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ ST E+ +L + V ++A G S V P +
Sbjct: 62 A-KGQRVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDS-----AVAAVPPE 115
Query: 142 AEAPVIQEP 150
P P
Sbjct: 116 LLVPPTPHP 124
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 46.8 bits (110), Expect = 1e-05
Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 22/218 (10%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
+ + +V W PP+ + Y DK KI + L +
Sbjct: 11 SVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQ----DKKIAPETRRSIEVPLNERI 66
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECV-VS 169
P+ + + A + + + ++C +
Sbjct: 67 CLQVGSQCSTNESEKPSILVEKCISPPEGDPESAV------TELQCIWHNLSYMKCSWLP 120
Query: 170 GVPTPDIKWYKDDSLIKGRNITYE--NNVARFTVVNC---------SESSEGRYTCKATN 218
G T Y + ++ N C S + +
Sbjct: 121 GRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKD 180
Query: 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIK 256
AG + S ++ +K HI L ++
Sbjct: 181 NAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQ 218
Score = 37.2 bits (85), Expect = 0.018
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 15/113 (13%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEI--VGRSDSSVTLHWRPPQDDGH------ 72
I + + G+ + + L++ PD P I + + + + W PQ+
Sbjct: 174 VQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYE 233
Query: 73 -------SPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
+ K E + + ++ + V + R+
Sbjct: 234 VEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 45.3 bits (107), Expect = 1e-05
Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 43/193 (22%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK--------------IET 96
+I G +VT + VL KD+ ++T
Sbjct: 4 QIYGVVYGNVTF---HVPSNVPLK---EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT 57
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA 156
S + + LT+ E + + + N T ++ V V P+I
Sbjct: 58 VSGSLTIYNLTSSDEDEYEMESPNITDT-----MKFFLYVLEMV--SKPMIYWE------ 104
Query: 157 GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 216
S+ TL C V ++K Y+ + ++ + T+ + + CKA
Sbjct: 105 --CSNATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKA 154
Query: 217 TNEAGTAETSCTL 229
N +
Sbjct: 155 VNRVSQESEMEVV 167
Score = 38.0 bits (88), Expect = 0.004
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 534 GFPRPEISWMKNGAEITDSKAC----------RIFIDEETSTIAIYSVVRADTSTYTVTA 583
P E+ W K ++ + + R+++D + ++ IY++ +D Y + +
Sbjct: 20 NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79
Query: 584 TNAAGSTSLDLSLQV 598
N + L +
Sbjct: 80 PNITDTMKFFLYVLE 94
Score = 35.7 bits (82), Expect = 0.027
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 699 SPAPSIVWFRNNKPLLSSPKK----------REIFDGENIILELKEADSETDAGDYKVVA 748
P ++W + + R D + L + S D +Y++ +
Sbjct: 21 VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS-DEDEYEMES 79
Query: 749 TNELGSATHGARVTVDVEKVGRPSINS 775
N + + V +E V +P I
Sbjct: 80 PNITDTMKF--FLYV-LEMVSKPMIYW 103
Score = 30.7 bits (69), Expect = 1.3
Identities = 12/109 (11%), Positives = 24/109 (22%), Gaps = 22/109 (20%)
Query: 483 KLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542
++ P T L + +P I SN L+ + E+
Sbjct: 76 EMESPNITDTMKFFLYVLEMVSKPMIYWECSNA---TLTCEVL--------EGTDVELKL 124
Query: 543 MKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
+ + + + + A N S
Sbjct: 125 YQGKEHLR-----------SLRQKTMSYQWTNLRAPFKCKAVNRVSQES 162
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 44.2 bits (104), Expect = 1e-05
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS----------- 208
++TL+CV S ++W N +++ +++ S +
Sbjct: 17 QTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76
Query: 209 -EGRYTCKATNEAGTAETSCTLLVQGKEIKESARH 242
EG Y C ++ + ++V E R+
Sbjct: 77 DEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRY 110
Score = 33.4 bits (76), Expect = 0.068
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 734
E TV+E T+ L S+ W + + + + + + +L
Sbjct: 4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA 63
Query: 735 AD--------SETDAGDYK-VVATNELGSATHGARVTVDV 765
+ D G YK + ++ + + +V V
Sbjct: 64 NQLSITVPNVTLQDEGVYKCLHYSDSVSTKE--VKVIVLA 101
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 45.7 bits (107), Expect = 2e-05
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 142 AEAPVIQEPLKDSVAGFQ-SSVTLECVVSGV-PTPDIKWYKDDSLIKGRNITYENNVARF 199
P+ EP + VA +S L C ++ ++W D+ + + + +
Sbjct: 4 QVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL--GAVQSDTGRSVL 61
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
TV N S S+ G C + T + + LLV
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY 94
Score = 29.1 bits (64), Expect = 4.5
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 671 QAPLFIERFEEKTVKEKG-TIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
PL +E E G + +L ++ A S+ W + L + G +
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL----GAVQSDTGRS- 59
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+L ++ A AG V + + H ++ V
Sbjct: 60 VLTVRNASLS-AAGTRVCVGSCGGRTFQHTVQLLV 93
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 45.5 bits (107), Expect = 3e-05
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 7/105 (6%)
Query: 20 DYTISLSNALGQASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHSPV 75
+ ++ A G + + D P + V L W PP + +
Sbjct: 96 PLELRVTAASGAPRYHRVIHINE-VVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSH 154
Query: 76 TGYVLESHDKDEFMVWNKIETTS--TTYEVTKLTTKHEYMFRVAA 118
Y ++ ++E T ++ L + Y F V A
Sbjct: 155 IRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199
Score = 35.5 bits (81), Expect = 0.046
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 9/109 (8%)
Query: 35 TTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI 94
+K LL A P+ + W G P + + + +
Sbjct: 13 ESKAALL-AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLH 71
Query: 95 ETTSTTYEV--------TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVV 135
+ + V ++ RV A + + VV
Sbjct: 72 QAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 3e-05
Identities = 97/666 (14%), Positives = 194/666 (29%), Gaps = 227/666 (34%)
Query: 131 TRYVVVKAPVDAEAPVIQEP--------LKDSVAGFQSSVTLECVVSGVPTPDIKW---- 178
+ ++ K +D +I L ++ Q + ++ V V + K+
Sbjct: 42 PKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSP 97
Query: 179 ----YKDDSL-----IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
+ S+ I+ R+ Y N+ F N S R
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVS-----RLQPY-------------- 137
Query: 230 LVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIG----VLALNVKSVSKLKWLARW 285
+++++ + A+ ++I + +G +AL+V K++
Sbjct: 138 ----LKLRQALLELRPAKN----VLI-------DGVLGSGKTWVALDVCLSYKVQ----- 177
Query: 286 TSDLESTAWFWW-FESKSTPA--VEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK 342
FW ++ ++P +E L KL + P+ S D +
Sbjct: 178 --CKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNW--------TSRSDHSSNIKLR 226
Query: 343 GKEIKESARHIITSRGTQRKLVIKRVTQDDET----DIG--VLAL-NVKSVSKLKWLDFG 395
I+ R ++ S+ + L++ Q+ + ++ +L K V+ DF
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----DFL 281
Query: 396 SGGWWFESKYKDDSLIKGR-NITYENNVARF-TVVNCSESSEGRYTCKATNEAGTAETRT 453
S SL +T + + ++C R
Sbjct: 282 SAA-----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT------------ 324
Query: 454 MWPGLPLSIVVSLRKADTRVKPPM----KRV-LQKLAVPFSYKTRTTNLQIQSPP----- 503
P +S+ R K V KL ++L + P
Sbjct: 325 ---TNPR--RLSIIAESIRDGLATWDNWKHVNCDKLT-----TIIESSLNVLEPAEYRKM 374
Query: 504 -QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KACRIFID 560
+ ++ +++ + LS+ W +K + + K +
Sbjct: 375 FDRLSVFPPSAHIPTILLSL--IWFDVIKSD----VM--------VVVNKLHKYSLVEKQ 420
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSL-----------------DLSLQVL-GYI 602
+ STI+I S+ Y +L DL L Y
Sbjct: 421 PKESTISIPSI-------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 603 ----------IQQQEKNSLKFTKV----------------ATLDPSTLQYTVENLRDKSE 636
I+ E+ +L F V A ++ T++ L+
Sbjct: 474 YSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---- 528
Query: 637 YYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGT----IRL 692
+Y +N P+ + A+ F+ + EE + K T I L
Sbjct: 529 FYKPYICDND----PKYERLVNAILD------------FLPKIEENLICSKYTDLLRIAL 572
Query: 693 MAKVKA 698
MA+ +A
Sbjct: 573 MAEDEA 578
Score = 46.0 bits (108), Expect = 5e-05
Identities = 100/711 (14%), Positives = 199/711 (27%), Gaps = 238/711 (33%)
Query: 10 IVK-FEDKDLGDYTIS-LSNALGQASATTKVTLLSAPGAPDTPEIVGRSDS---SVTLHW 64
V F+ KD+ D S LS + I+ D+ ++ L W
Sbjct: 29 FVDNFDCKDVQDMPKSILSKE-------------------EIDHIIMSKDAVSGTLRLFW 69
Query: 65 RPPQDDGHSPVTGYVLESHDKD-EFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNA 121
V +V E + +F+ + I E + + + +
Sbjct: 70 TL-LSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRL-------- 119
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS--VTLE--------CVVSGV 171
+N V K V P ++ L+ ++ + + V ++ V V
Sbjct: 120 -------YNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS------EGRYTCKATNEAGTAET 225
+ + + + NC+ + N ++
Sbjct: 171 -------CLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 226 SCTLLVQGKEIKESARHIITARGTQRKLVI------KRV-------------TQDDE-TD 265
S + ++ I+ R ++ ++ + L++ + T+ + TD
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 266 IGVLALNVKSVSKLKWLARWTSDLESTAWFW-WFESKSTPAVEFLSKLPS--VTLVP-HL 321
+ A +S T D E + + + + LP +T P L
Sbjct: 280 F-LSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCR-------PQDLPREVLTTNPRRL 330
Query: 322 G--DATFQVELSSPD--IQVKWLKKGKEIKESARHIITS--RGTQRKLVIKRVTQDDETD 375
+ + L++ D V K I+ S + + R +L +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAH 386
Query: 376 I--GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433
I +L+L WF+ D ++ N + ++++V +
Sbjct: 387 IPTILLSL-----------------IWFDVIKSDVMVV-------VNKLHKYSLVEK-QP 421
Query: 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTR 493
E + P + L + +VK + L + V Y
Sbjct: 422 KESTISI---------------PSIYL---------ELKVKLENEYALHRSIVD-HY--- 453
Query: 494 TTNLQIQSPPQQPAIKLVDS--------NLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN 545
N+ +D +LK+ + + + F +++
Sbjct: 454 --NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVFLDF-----RFLEQ 505
Query: 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL----GY 601
K +R D+ TA NA+GS L+ LQ L Y
Sbjct: 506 -------K------------------IRHDS-----TAWNASGS-ILNT-LQQLKFYKPY 533
Query: 602 IIQQQEKNS------LKF-TKVAT---LDPST--LQYTVENLRDKSEYYFQ 640
I K L F K+ T L+ L + E F+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA---LMAEDEAIFE 581
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 44.6 bits (105), Expect = 3e-05
Identities = 34/201 (16%), Positives = 57/201 (28%), Gaps = 36/201 (17%)
Query: 49 TPEIV-GRSDSSVTLHWRPPQDD---------GHSPVTGYVLESHDKDEFMVWN----KI 94
TP +V G SVTL P + + + V E V N K
Sbjct: 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 95 ETTSTTY--EVTKLTTKHE--YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEP 150
+ +Y +++ L + Y ++ + S ++ +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQI-------STKTSAKLSSYTLRILRQLRNIQVTNH 116
Query: 151 LKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVVNCSESS 208
+ + L C V +W +L N+T + SS
Sbjct: 117 SQLFQNM-TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDP--------RISS 167
Query: 209 EGRYTCKATNEAGTAETSCTL 229
E YTC A N S +
Sbjct: 168 EQDYTCIAENAVSNLSFSVSA 188
Score = 39.6 bits (92), Expect = 0.001
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 13/109 (11%)
Query: 491 KTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550
K + L+I + + ++ + VE W G ++
Sbjct: 96 KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVED---ADDNVSFRWEALGNTLS 152
Query: 551 DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ D S YT A NA + S +S Q L
Sbjct: 153 SQPNLTVSWDPRIS----------SEQDYTCIAENAVSNLSFSVSAQKL 191
Score = 32.3 bits (73), Expect = 0.37
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 25/134 (18%)
Query: 627 TVENLR--DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTV 684
+ NL+ D Y Q+ + S L L + + +
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSA------KLSSYTLRILRQLRNI-----QVTNHSQLFQ 121
Query: 685 KEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGD 743
+ L V+ A S W L S P L + + D
Sbjct: 122 NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQD 170
Query: 744 YKVVATNELGSATH 757
Y +A N + + +
Sbjct: 171 YTCIAENAVSNLSF 184
Score = 31.1 bits (70), Expect = 1.1
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 19/89 (21%)
Query: 161 SVTLECVVS-GVPTPDIKWYKDDSLI----------KGRNITYENNVARFTVV------- 202
SVTL G I W +++ + ++T R
Sbjct: 15 SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 203 -NCSESSEGRYTCKATNEAGTAETSCTLL 230
N G Y + + + +S TL
Sbjct: 75 SNLKMEDTGSYRAQISTKTSAKLSSYTLR 103
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 12/144 (8%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYV--LESHDKDEFMVWNKIE----T 96
P V + + L W + V L+ + + W +I
Sbjct: 205 NELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENV 264
Query: 97 TSTTYEVTK-LTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
+T + + K Y+ RV A + T S ++ L DS
Sbjct: 265 KTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSF 324
Query: 156 AGFQSSVTLECVVSGVPTPDIKWY 179
+ + TP I+ Y
Sbjct: 325 -----HIYIGAPKQSGNTPVIQDY 343
Score = 39.2 bits (90), Expect = 0.005
Identities = 19/166 (11%), Positives = 34/166 (20%), Gaps = 9/166 (5%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK-----IETTSTTYEVTKLTTKHE 111
D + L W + + + + I +T + KL E
Sbjct: 20 DDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEE 77
Query: 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
R+ A + ++ P + +D S + V
Sbjct: 78 IKLRIRAEKENTSSWYEVDS--FTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWA 135
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
Y + S E Y K
Sbjct: 136 LDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVK 181
Score = 37.7 bits (86), Expect = 0.015
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 6/114 (5%)
Query: 36 TKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT-GYVLE---SHDKDEFMVW 91
T + A P I SDS ++ P+ G++PV Y L ++
Sbjct: 301 KFDTEIQAFLLPPVFNIRSLSDS-FHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAE 359
Query: 92 NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGT-GPASHNTRYVVVKAPVDAEA 144
KI T V L Y + A +S + V K +
Sbjct: 360 RKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTS 413
Score = 31.5 bits (70), Expect = 1.1
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 14/166 (8%)
Query: 50 PEI-VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHD----KDEFMVWNKIETTSTTYEVT 104
PE+ + D ++ +H P D + ++ K+ V +IE + +++
Sbjct: 109 PEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIY 168
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTL 164
KL+ + Y +V A ++ + + + P S
Sbjct: 169 KLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIE--------VSVQNQ 220
Query: 165 ECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARF-TVVNCSESSE 209
V+ T ++ L N++ ++ + +C
Sbjct: 221 NYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKT 266
Score = 29.2 bits (64), Expect = 6.3
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 600 GYIIQQQEKNSLKFTKVATLDPSTLQYTV--ENLRDKSEYYFQVFAENSVGLGPEATTEL 657
++ + + K+ ++ + V +N+ K Y +V A + +
Sbjct: 242 AFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIK 301
Query: 658 VALATHATLGSPGQA 672
A L P
Sbjct: 302 FDTEIQAFLLPPVFN 316
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 43.8 bits (103), Expect = 6e-05
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 8/110 (7%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKD 181
A V V A+ P + + + C SG P P + W ++
Sbjct: 87 YEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTS--NIRRIICSTSGGFPEPHLSWLEN 144
Query: 182 DSLIKGRNITYENNVAR--FTV---VNCSESSEGRYTCKATNEAGTAETS 226
+ N T + + V ++ + ++ + C +
Sbjct: 145 GEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQT 194
Score = 37.3 bits (86), Expect = 0.010
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 494 TTNLQIQSPPQQPAIKLVDSNLKSQ-RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS 552
L +++ P+I + + R+ + GFP P +SW++NG E+
Sbjct: 99 EVTLSVKADFPTPSISDFEIPTSNIRRIICSTSG-------GFPEPHLSWLENGEELNAI 151
Query: 553 KACRIFIDEETSTIAIYSVVR---ADTSTYTVTATNAAGSTSLDLSLQ 597
+ D ET A+ S + ++ + +
Sbjct: 152 NT-TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN 198
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 44.5 bits (104), Expect = 7e-05
Identities = 19/139 (13%), Positives = 33/139 (23%), Gaps = 32/139 (23%)
Query: 127 ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD---IKWYKDD- 182
+V+K PV+ + G + + C + + W
Sbjct: 103 IRLKNESMVMKKPVELWVLPEEPRDLRVRVG--DTTQMRCSIQSTEEKRVTKVNWMFSSG 160
Query: 183 ---------SLIKGRNITYENNVARF-----------------TVVNCSESSEGRYTCKA 216
S ++ RF + ES +G YTC
Sbjct: 161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSI 220
Query: 217 TNEAGTAETSCTLLVQGKE 235
+ + L V E
Sbjct: 221 YVGKLESRKTIVLHVVQDE 239
Score = 39.5 bits (91), Expect = 0.003
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 26/99 (26%)
Query: 160 SSVTLECVVS---GVPTPDIKWYK----------------DDSLIKGRNITYENNVARFT 200
SV + CVV + W + S+ GR + V
Sbjct: 21 ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTF 80
Query: 201 VVNCS-------ESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ S ++ EG YTC+ + + + +
Sbjct: 81 HNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Score = 36.4 bits (83), Expect = 0.029
Identities = 25/252 (9%), Positives = 60/252 (23%), Gaps = 72/252 (28%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF--------------------IDEETSTIAIYSVVR 573
+ W+ + + S+ + ++ + V +
Sbjct: 34 EKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK 93
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633
AD YT S + +++ V +P L
Sbjct: 94 ADEGIYTCEIRLKNESMVMKKPVELW----------------VLPEEPRDL--------- 128
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE--RFEEKTVKEKGTIR 691
V +G + + + +E+ +
Sbjct: 129 ------------RVRVGDTTQMRCSIQ------STEEKRVTKVNWMFSSGSHTEEETVLS 170
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751
+ +++ S+ FRN L + + ++L+ E+D G Y
Sbjct: 171 YDSNMRSGKFQSLGRFRNRVDLTGDISRN------DGSIKLQTV-KESDQGIYTCSIYVG 223
Query: 752 LGSATHGARVTV 763
+ + V
Sbjct: 224 KLESRKTIVLHV 235
Score = 35.2 bits (80), Expect = 0.061
Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 24/165 (14%)
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
EG YTC+ + + + + + +P RV
Sbjct: 96 EGIYTCEIRLKNES-----------MVMKKPVELWVLPEEPRDLRVRVGDTT-------Q 137
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
IQS ++ K+ ++ + + +N ++T
Sbjct: 138 MRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGD-- 195
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
I +I + +V +D YT + + + L V+
Sbjct: 196 ----ISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
Score = 30.6 bits (68), Expect = 1.6
Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 24/116 (20%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKPLLSSPKKREIFDGENII 729
P + V ++ + V+ + + W + +S + ++
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 730 --------------------LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L L++ + D G Y + S V + V
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELWV 120
Score = 29.5 bits (65), Expect = 4.4
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 4/125 (3%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
+ +L + + D G YT + V L P P + + +
Sbjct: 82 NDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCS 141
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123
+ ++ + V +E V + + + + RV I
Sbjct: 142 IQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF----QSLGRFRNRVDLTGDIS 197
Query: 124 TGPAS 128
S
Sbjct: 198 RNDGS 202
Score = 29.5 bits (65), Expect = 4.6
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 6 ATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP 44
++ + ++ D G YT S+ ++ T + ++
Sbjct: 201 GSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 43.9 bits (103), Expect = 8e-05
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 12/120 (10%)
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYK 180
T P + + ++ + + ++ + + CV +G P I W+
Sbjct: 97 FVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTG---EPVPMARCVSTGGRPPAQITWHS 153
Query: 181 DDSLIKGRNITYENNVARFTV------VNCSESSEGRYTCKATNEAGTAE--TSCTLLVQ 232
D + + TV V S+ + TCK +E+ + +L V
Sbjct: 154 DLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213
Score = 41.2 bits (96), Expect = 6e-04
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAI--KLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK 544
P ++ L++ + PQ A K+ + S G P +I+W
Sbjct: 101 PQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTG-------GRPPAQITWHS 153
Query: 545 NGAEITDSKACRIFIDEETSTIAIYSVV---RADTSTYTVTATNAAGSTSLDLSLQV 598
+ + + F+ + +++ +V + D T + + L++ +
Sbjct: 154 DLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210
Score = 32.7 bits (74), Expect = 0.35
Identities = 15/139 (10%), Positives = 29/139 (20%), Gaps = 15/139 (10%)
Query: 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI 690
+ D+ Y L LA P ++ + +
Sbjct: 87 VEDEGSYTCLFVTFPQGSR--SVDIWLRVLA----------KPQNTAEVQKVQLTGEPVP 134
Query: 691 RLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDG-ENIILELKEADSETDAG-DYKVV 747
P I W + + + + G + S G
Sbjct: 135 MARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCK 194
Query: 748 ATNELGSATHGARVTVDVE 766
+E V++ V
Sbjct: 195 VEHESFEKPQLLTVSLTVY 213
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 44.1 bits (103), Expect = 9e-05
Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 21/228 (9%)
Query: 19 GDYTISLSNALGQASATTKVTLLSAPGAP-----DTPEIVGRSDSSVTLHWRPPQDDGHS 73
+ GQ++A T +T+ P + + VG++ +TL + G +
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKN---LTLRCQVE---GGA 114
Query: 74 PVTGYVLESHDKDEFMVWNK---IETTSTTYEVTKLTTKHEYMFRVAAVNAIGT-GPASH 129
P + + E + + E T V H F + G
Sbjct: 115 PRANLTV-VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWY-KDDSLIKG 187
+ + + V + T+ C + G+ P + + +
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 188 RNITYENNVARFT---VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+TY N+ V + R TC + ET T+ +
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281
Score = 43.7 bits (102), Expect = 1e-04
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 12/130 (9%)
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
YE++ + + + G A V P E +
Sbjct: 47 NNRKVYELSNVQEDSQP--MCYSNCPDGQSTAKTFLT--VYWTP---ERVELAPLPSWQP 99
Query: 156 AGFQSSVTLECVVSGVPTPD---IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
G ++TL C V G + + + +K E TV+ + +
Sbjct: 100 VG--KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF 157
Query: 213 TCKATNEAGT 222
+C+ +
Sbjct: 158 SCRTELDLRP 167
Score = 39.5 bits (91), Expect = 0.003
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
SV + C S + + L K + NN + + N E + + C +
Sbjct: 15 GSVLVTCSTSCDQPKLLGI--ETPLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCP 70
Query: 220 AGTAETSCTLLVQ 232
G + L V
Sbjct: 71 DGQSTAKTFLTVY 83
Score = 32.1 bits (72), Expect = 0.59
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 673 PLFIERFEEKTVKEKGT-IRLMAKVKASPAPSIV---WFRNNKPLLSSPKKREIFDGENI 728
P + V E T ++ + S ++ L + + ++
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGNDSF 243
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
+ + + D G ++ LG+ + TV + P++
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Score = 30.6 bits (68), Expect = 1.7
Identities = 18/198 (9%), Positives = 39/198 (19%), Gaps = 45/198 (22%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+ + +K E TV+ + ++C+ +
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE------------ 171
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLK---SQRLS 521
F + LQ P P + L+ +
Sbjct: 172 ----------------------LFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVV 209
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETST-IAIYSVVRADTSTYT 580
FP E + + D ++ + T T
Sbjct: 210 CSLD-------GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 581 VTATNAAGSTSLDLSLQV 598
S ++ +
Sbjct: 263 CAVILGNQSQETLQTVTI 280
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.8 bits (98), Expect = 9e-05
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 17/99 (17%)
Query: 160 SSVTLECVVSGVPTP--DIKWYKDDSLIKGRNITYENNVA-----RFTVV--------NC 204
S+ L+C +S + W + D L+ N +++ R +
Sbjct: 19 GSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSL 78
Query: 205 SESSEGRYTCK-ATNEAGTAETSCTLLVQGK-EIKESAR 241
+ + G Y C T GT L V + AR
Sbjct: 79 TVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 43.6 bits (102), Expect = 9e-05
Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 21/126 (16%)
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQ-EPLKDSVAGFQSSVTLECVVS-GVPTPDI 176
V A G A R V P EA + SV + C G P P I
Sbjct: 96 VRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKI 152
Query: 177 KWYKDDSLIKGR----------NITYENNVARFTVVNC------SESSEGRYTCKATNEA 220
WY++ ++ + T ++ + + + + C A
Sbjct: 153 TWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212
Query: 221 GTAETS 226
Sbjct: 213 PEGRHG 218
Score = 41.7 bits (97), Expect = 4e-04
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD 551
T L + + P+ + L S + + G P P+I+W +NG +
Sbjct: 105 EATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRN-GNPAPKITWYRNGQRLEV 163
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
+ T+ S + + TST +
Sbjct: 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLR 196
Score = 36.7 bits (84), Expect = 0.020
Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 27/117 (23%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNITY--------- 192
E + PL + + G SV L+C +G ++W+ D +
Sbjct: 1 EVRLSVPPLVEVMRG--KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQ 58
Query: 193 --------------ENNVARFTVVNCSESSEGRYTCKA-TNEAGTAETSCTLLVQGK 234
++ R + E Y C AGTAE + L V K
Sbjct: 59 VTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK 115
Score = 29.4 bits (65), Expect = 4.2
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 666 LGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFD 724
P + + +++ + +PAP I W+RN + L +
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 725 GENIILELKEADSETDAGDYKVVATNEL--GSATHGARVTVDVE------KVGRPSINSI 776
+ +G + +T L A + GR +
Sbjct: 173 MTS-------RTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTF 225
Query: 777 DIDLNHVHY 785
+ +HY
Sbjct: 226 HLT---LHY 231
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 44.1 bits (103), Expect = 1e-04
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEI--VGRSDSSVTLHWRPPQDDGHSPVTGY 78
++ S+ ++ L A + P + +++ W P Y
Sbjct: 195 VLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIEGTRMSIQWEKPVSAFPIHCFDY 254
Query: 79 VLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
++ H+ + +IE T ++ + +Y +V A
Sbjct: 255 EVKIHNTRN--GYLQIEKLMTNAFISIIDDLSKYDVQVRA 292
Score = 34.9 bits (79), Expect = 0.079
Identities = 31/240 (12%), Positives = 56/240 (23%), Gaps = 25/240 (10%)
Query: 39 TLLSAPGAPDTP----EIVGRSDSSVTLHWRPPQDDGHSPVT-GYVLESHDKDEFMVWNK 93
LL P I + V L W+P D V Y ++ + E +
Sbjct: 3 DLLPDEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKE-DDYET 61
Query: 94 IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP-----VIQ 148
T S VT L R N +S + + +
Sbjct: 62 RITESKA--VTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTN 119
Query: 149 EPLKDSVAGFQSSVTLECV-VSGVPTPDIKWYK--DDSLIKGRNITYENNVARFTVVNCS 205
+ V+L C + G P+ Y + + C
Sbjct: 120 TTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACW 179
Query: 206 ESSEG---------RYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIK 256
+++ L + + +TA ++ I+
Sbjct: 180 FPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIEGTRMSIQ 239
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 9/158 (5%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLE---SHDKDEFMVWNKIETTSTTYEVTKLTTK--HE 111
+ L W PP+ VT Y ++ K T +++ T+ H+
Sbjct: 21 NMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQ 79
Query: 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
Y RV A+ + + R+ V + S+ +T
Sbjct: 80 YYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSI---SVVLTAPEKWKRN 136
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209
P + N++ N + T C +
Sbjct: 137 PEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHT 174
Score = 32.1 bits (72), Expect = 0.53
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 53 VGRSDSSVTLHWRPPQDDGHSP--VTGYVLESHDKDEFMV---------WNKIETTSTTY 101
+ + S+++ P+ +P + + + + ++ V T+ T
Sbjct: 116 LTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTL 175
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGP 126
+T L Y V +
Sbjct: 176 VLTWLEPNTLYCVHVESFVPGPPRR 200
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 42.8 bits (100), Expect = 1e-04
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHS 73
YT+ + +++LG + L + P P V + + + W P ++
Sbjct: 81 GYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENN 140
Query: 74 PVTGYVLE---SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + S + ++ ++ + S + + Y +V G G S
Sbjct: 141 --LQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
Score = 32.7 bits (74), Expect = 0.32
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 599 LGYIIQ-QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
L + I+ +++ D + ++ + Y QV + GLG
Sbjct: 141 LQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGY 194
Score = 28.1 bits (62), Expect = 8.9
Identities = 9/103 (8%), Positives = 21/103 (20%), Gaps = 16/103 (15%)
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK-------------IETTSTTYEVT 104
+ +T W + L H +
Sbjct: 16 TKMTCRWSTSTI-QSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQ 74
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI 147
+ Y + +++G+ V+ + V P
Sbjct: 75 PIFLLSGYTMWIRINHSLGS--LDSPPTCVLPDSVVKPLPPSS 115
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 40.4 bits (94), Expect = 2e-04
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
S V S +S+TL W+ ++ S T + + + D + +
Sbjct: 6 SGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSS----NLNVSEPRA 61
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRY 133
+ L + Y V V G +
Sbjct: 62 VIPGLRSSTFYNITVCPVLGDIEGTPGFLQVH 93
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 43.8 bits (102), Expect = 2e-04
Identities = 28/224 (12%), Positives = 54/224 (24%), Gaps = 14/224 (6%)
Query: 22 TISLSNALGQASATTKVTLLSAPGAPDTPEI--VGRSDSSVTLHWRPPQDDGHS-PVTGY 78
S + T L+ P P + L W S ++
Sbjct: 84 VDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPG 143
Query: 79 VLE-----SHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
LE +D + + T+ T L Y+ RV A G+ + +
Sbjct: 144 DLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPS 203
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW---YKDDSLIKGR 188
++ Q + + ++ V + + YK
Sbjct: 204 KWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSA 263
Query: 189 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ E + R+ C+ + VQ
Sbjct: 264 VLLREEECSPVLREGLGSLHT-RHHCQIPVPDPATHGQYIVSVQ 306
Score = 42.7 bits (99), Expect = 4e-04
Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 11/116 (9%)
Query: 22 TISLSNALGQASATTKVTLLSAPGAPDTPEIV---------GRSDSSVTLHWRPPQDDGH 72
I + + V A + + + S +L W +
Sbjct: 289 QIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYE 348
Query: 73 SPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
+ ++ +K ET + + + L Y RV +
Sbjct: 349 HIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 42.1 bits (99), Expect = 2e-04
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+SVT+ C + + + + K++S +N N ARF++ + +E GRY C
Sbjct: 20 NSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYR 78
Query: 218 NEAGTAETSCTLLV 231
+ G ++ S L +
Sbjct: 79 SPVGWSQPSDPLEL 92
Score = 32.1 bits (73), Expect = 0.45
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNV----ARFTVVNCSESSEGRYTCK 215
SVTL C S P K+ + + E+ A F + + G Y C
Sbjct: 115 KSVTLLCQ-SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173
Query: 216 ATNEAGTAETSC-----TLLVQG 233
+++ S L+V G
Sbjct: 174 SSHGFSHYLLSHPSDPLELIVSG 196
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 42.5 bits (99), Expect = 2e-04
Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 13/127 (10%)
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169
Y FRV S+ + ++ E P I L C +
Sbjct: 95 GSYFFRVERG---RDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG---RPTRLSCSLP 148
Query: 170 GV----PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
G P W + T + + T+ E TC+ + T
Sbjct: 149 GSCEAGPPLTFSWTGNALSPLDPETTRSSEL---TLTPRPEDHGTNLTCQMKRQGAQVTT 205
Query: 226 SCTLLVQ 232
T+ +
Sbjct: 206 ERTVQLN 212
Score = 37.9 bits (87), Expect = 0.006
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 488 FSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGA 547
+SY+ NL++ + ++P I ++ + + + P SW N
Sbjct: 109 YSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCS--LPGSCEAGPPLTFSWTGNAL 166
Query: 548 EITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
D + R +S + + + T + + ++Q+
Sbjct: 167 SPLDPETTR------SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 42.1 bits (98), Expect = 2e-04
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLE---SHDKDEFMVWNKIETTSTTYEVTKLTTK--HE 111
+ L W+P + + Y ++ + + T + ++T T+
Sbjct: 20 NFHNILQWQPGRALT-GNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEP 78
Query: 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
Y RV A +A S R+ + + S+
Sbjct: 79 YYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSL 122
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 42.0 bits (98), Expect = 3e-04
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRV 116
+ L W P + + F ++TT T + + L+ ++ RV
Sbjct: 14 NFKNILQWESPAFAKGQ--LTFTAQYLSYRIF-QDKCMQTTLTECDFSSLSKYGDHTLRV 70
Query: 117 AAVNAIGTGPASHNT 131
A A T
Sbjct: 71 RAEFADEHSDWVQIT 85
Score = 32.8 bits (74), Expect = 0.24
Identities = 10/101 (9%), Positives = 21/101 (20%), Gaps = 9/101 (8%)
Query: 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHD--------KDEFMVWNKIETTSTTYEVT 104
V + + + P+ + + K +I +
Sbjct: 101 VEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLR 160
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
L Y +V + V + D P
Sbjct: 161 NLEPWTTYCVQVRGFLPDRNKA-GEWSEPVCEQTTHDETVP 200
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 41.2 bits (96), Expect = 4e-04
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 12/110 (10%)
Query: 26 SNALGQASATTKVTLLSAPGAPDTPEIV-------GRSDSSVTLHWRPP----QDDGHSP 74
+N +G + + ++ PD P + + + W PP G
Sbjct: 82 TNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFT 141
Query: 75 VTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGT 124
+ Y + + T +++ L +Y+ +V G
Sbjct: 142 LL-YEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGY 190
Score = 37.4 bits (86), Expect = 0.010
Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK-----DEFMVWNKIETTS 98
PG P+ + + + T WRP D G T Y L H + E + S
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLP--TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
+ + Y+ V A N +G+ + V D + E +
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 159 QSSVT 163
+
Sbjct: 122 YLWIK 126
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 41.0 bits (96), Expect = 5e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI--KGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+SVT+ C + + + + K+ S +N N ARF++ + +E GRY C
Sbjct: 20 NSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYY 78
Query: 218 NEAGTAETSCTLLVQ 232
+ AG +E S L +
Sbjct: 79 SPAGWSEPSDPLELV 93
Score = 28.7 bits (64), Expect = 5.9
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNV-----ARFTVVNCSESSEGRYTC 214
+VTL+C S + ++ + + A F V + S C
Sbjct: 115 ENVTLQCG-SRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 41.0 bits (96), Expect = 5e-04
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
VT+ C + + + + + SL + N +F + + + G+Y+C
Sbjct: 19 KQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYR 77
Query: 218 NEAGTAETSCTL 229
+E S L
Sbjct: 78 VGELWSEPSNLL 89
Score = 31.7 bits (72), Expect = 0.62
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
VT C T K+ + + A F + + + G Y C +
Sbjct: 114 EKVTFYCR-LDTATSMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 170
Score = 28.2 bits (63), Expect = 8.4
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 397 GGWWFESKYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
G ++ + + SL + N +F + + + G+Y+C +E
Sbjct: 30 GAVEYQL-HFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE---- 84
Query: 455 WPGLPLSIVV 464
P L +VV
Sbjct: 85 -PSNLLDLVV 93
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 39.1 bits (90), Expect = 7e-04
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 19/107 (17%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE----------F 88
+ S PGAP T I ++ + L W PP + Y + F
Sbjct: 3 SGSSGPGAPSTVRIS-KNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVF 60
Query: 89 MVWNKIETTSTTYEVTKLTTKH-------EYMFRVAAVNAIGTGPAS 128
M TS T +L H +FR++A N G GPA+
Sbjct: 61 MRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPAT 107
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 40.9 bits (95), Expect = 7e-04
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIV-GRSDSSVTLHWRPPQDDGHSPVTGYV 79
+++ +++ GQ S LL+ P P V + WR +D +
Sbjct: 75 FSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQYQISWRSDYEDPAFYMLKGK 134
Query: 80 LE--------SHDKDEFMVWNKIETTSTTYEVT--KLTTKHEYMFRVAAVNAIGTG 125
L+ I S + + + Y +V A G+
Sbjct: 135 LQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSS 190
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 41.3 bits (95), Expect = 8e-04
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 17/116 (14%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHSPVT 76
+ + L T+ + PD P+ + ++ V + W P +P +
Sbjct: 188 VMVDAVHKLKYEQYTSSFFIRDII-KPDPPKNLQLKPLKNSRQVEVSWEYPDT-WSTPHS 245
Query: 77 GYVLE------SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
+ L K E + TS T + + V A + +
Sbjct: 246 YFSLTFCVQVQGKSKREKKDRVFTDKTSAT-----VICRKNASISVRAQDRYYSSS 296
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 37.7 bits (87), Expect = 0.001
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES 207
K S++G +SV L C + ++KW K+ + ++ + + + SE
Sbjct: 5 NIEYKVSISG--TSVELTCPLD--SDENLKWEKNGQELPQKHDKH------LVLQDFSEV 54
Query: 208 SE-GRYTCKATNE 219
+ G Y C
Sbjct: 55 EDSGYYVCYTPAS 67
Score = 26.9 bits (59), Expect = 6.5
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ W KNG E+ + + + + D+ Y + +T L L
Sbjct: 25 SDENLKWEKNGQELPQKHDKHLVLQDFSEV--------EDSGYYVCYTPASNKNTYLYLK 76
Query: 596 LQVLGY 601
+V Y
Sbjct: 77 ARVSEY 82
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 40.7 bits (95), Expect = 0.001
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
VT+ C + + + + + SL + N +F + + + G+Y+C
Sbjct: 22 KQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYR 80
Query: 218 NEAGTAETSCTLLVQ 232
+E S L +
Sbjct: 81 VGELWSEPSNLLDLV 95
Score = 33.3 bits (76), Expect = 0.24
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
VT C T K+ + + A F + + + G Y C +
Sbjct: 117 EKVTFYCR-LDTATSMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 173
Score = 29.1 bits (65), Expect = 5.7
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 397 GGWWFESKYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
G ++ + + SL + N +F + + + G+Y+C +E
Sbjct: 33 GAVEYQL-HFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE---- 87
Query: 455 WPGLPLSIVV 464
P L +VV
Sbjct: 88 -PSNLLDLVV 96
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 40.0 bits (93), Expect = 0.001
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 9/116 (7%)
Query: 21 YTISLSNALGQASATTKVTLLSA--PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG- 77
YT+ L A Q P AP + ++ L W P +
Sbjct: 74 YTLDL-WAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHL 132
Query: 78 -YVLE---SHDKDEFMVWN-KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
Y + +D +F ++N S + L + Y RV A S
Sbjct: 133 TYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWS 188
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 39.9 bits (93), Expect = 0.001
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 160 SSVTLECVVS-GVPTPDIKWYKDDSLIK-GRNITYEN-NVARFTVVNCSESSEGRYTCKA 216
SV ++C + K+ + + GR + + N F + + + GRY C+
Sbjct: 24 GSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY 83
Query: 217 TNEAGTAETSCTLLVQ 232
S TL +
Sbjct: 84 RIGHYRFRYSDTLELV 99
Score = 34.8 bits (80), Expect = 0.057
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 214
+++L C + +P K+ L ++ + E+ A F++ + G Y C
Sbjct: 121 ENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHP-ANFSLGPVDLNVSGIYRC 174
Score = 31.4 bits (71), Expect = 0.84
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 391 WLDFGSGGWWFESKYKDDSLIK-GRNITYEN-NVARFTVVNCSESSEGRYTCKATNEAGT 448
+ K+ + + GR + + N F + + + GRY C+
Sbjct: 31 QAIREAYLTQLM-IIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR 89
Query: 449 AETRTMWPGLPLSIVV 464
L +VV
Sbjct: 90 FR-----YSDTLELVV 100
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 40.2 bits (93), Expect = 0.001
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQ-DDGHSPV 75
++ +G+ S T K L+ P+ P + + + + + V
Sbjct: 87 GKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKV 146
Query: 76 TGYVLESHDKDEFMVWNKIETTSTTYEVT--KLTTKHEYMFRVAA 118
+ + + + W + +ST + KL Y +V +
Sbjct: 147 LMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRS 191
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.4 bits (93), Expect = 0.002
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
S L C + W +++ + +++ + N + G Y C+A
Sbjct: 514 PNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572
Query: 218 NEAGTAET--SCTLLVQG 233
E LL +
Sbjct: 573 -EGSYFREAQHWQLLPED 589
Score = 36.5 bits (83), Expect = 0.040
Identities = 10/94 (10%), Positives = 22/94 (23%), Gaps = 4/94 (4%)
Query: 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKW 339
+ + + + + L V+L P+ + S W
Sbjct: 475 ISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPN-SRYYLSCPMESRHATYSW 533
Query: 340 LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
K + + L I+ +T
Sbjct: 534 RHKENVEQSCEPGHQSPNCI---LFIENLTAQQY 564
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 36.5 bits (84), Expect = 0.005
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 47 PDTPEIV-----GRSDSSVTLHWRPPQ--DDGHSPVTGYVLESHDKDEFMVWNKIETT-S 98
PD PE V + + + W+ P D S + L W +E +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLIL-DQWQHVELSNG 66
Query: 99 TTYEVTKLTTKHEYMFRVAA 118
T + +T EY+ +VAA
Sbjct: 67 TAHTITDAYAGKEYIIQVAA 86
Score = 27.3 bits (60), Expect = 7.3
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 589 STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQV 641
ST D L + ++ + ++ V + +T+ + EY QV
Sbjct: 34 STWPDPESFPLKFFLRYRPLILDQWQHVELSN--GTAHTITDAYAGKEYIIQV 84
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 37.5 bits (87), Expect = 0.006
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
VTL C + K S + A + S GRY C N
Sbjct: 23 KPVTLRCQGP-PGVDLYRLEKLSSSR-------YQDQAVLFIPAMKRSLAGRYRCSYQNG 74
Query: 220 AGTAETSCTLLVQ 232
+ + S L +
Sbjct: 75 SLWSLPSDQLELV 87
Score = 31.7 bits (72), Expect = 0.52
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 214
VTL+C + YK+ +N A F ++ + + G Y C
Sbjct: 109 GDVTLQCQ-TRYGFDQFALYKEGDPAPYKN-PERWYRASFPIITVTAAHSGTYRC 161
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.006
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 31/60 (51%)
Query: 607 EKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL 666
EK +LK K L ++L +++A++S P ALA AT+
Sbjct: 18 EKQALK--K---LQ-ASL---------------KLYADDS---AP-------ALAIKATM 46
Score = 34.9 bits (79), Expect = 0.034
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 23/52 (44%)
Query: 478 KRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVE 529
K+ L+KL +L++ + PA L++K+ +E
Sbjct: 19 KQALKKL---------QASLKLYADDSAPA------------LAIKAT--ME 47
Score = 29.5 bits (65), Expect = 2.3
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 21/46 (45%)
Query: 152 KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS---L-IKGRNITYE 193
K ++ Q+S +K Y DDS L IK T E
Sbjct: 19 KQALKKLQAS--------------LKLYADDSAPALAIKA---TME 47
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 36.9 bits (85), Expect = 0.007
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 684 VKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL-KEADSETDA 741
+ EKG +R + K S + + N K + PK + D I+E+ E + D
Sbjct: 49 ILEKGQVRFWMQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE 108
Query: 742 GDYKVVATNELGSAT 756
G Y + +
Sbjct: 109 GTYTFQIQDGKATGH 123
Score = 33.4 bits (76), Expect = 0.12
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 172 PTPDIKWYKDDSLIKGR-----NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
+ + ++ I +I + + + EG YT + + G A
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQD--GKATGH 123
Query: 227 CTLLVQGKEIKESAR 241
TL++ G K+ +
Sbjct: 124 STLVLIGDVYKKLQK 138
Score = 28.4 bits (63), Expect = 4.6
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 327 QVELSSPDIQVKWLKKGKEIKESARHIIT---SRGTQRKLVIKRVTQDDE 373
Q E S + +V ++ KEI E ++ + + G + ++++ +DE
Sbjct: 60 QAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIE-MFMEKLQDEDE 108
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 38.6 bits (88), Expect = 0.008
Identities = 13/115 (11%), Positives = 31/115 (26%), Gaps = 9/115 (7%)
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD 181
+ + + + + + L+C + W
Sbjct: 511 LHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQ 569
Query: 182 DSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ ++K + N + N SE G Y C + E +T ++ +
Sbjct: 570 NGVLKAESPKYGLMGRKN---LLIFNLSEGDSGVYQCLSE-ERVKNKTVFQVVAK 620
Score = 37.8 bits (86), Expect = 0.015
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIK-ESARH 352
++ + H G A + S +V W + +K ES ++
Sbjct: 521 LIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKY 580
Query: 353 IITSRGTQRKLVIKRVTQDD 372
+ R L+I +++ D
Sbjct: 581 GLMGRKN---LLIFNLSEGD 597
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 35.4 bits (82), Expect = 0.009
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC--KAT 217
+VTL C ++ + + +L + E + A F+ + G Y C + +
Sbjct: 20 DTVTLRCH-LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS 78
Query: 218 NEAGTAETS--CTLLVQGKEIKESARH 242
T+ S L++ E + H
Sbjct: 79 EPLWTSNQSDPVELVLTI-EGRHHHHH 104
Score = 29.7 bits (67), Expect = 1.2
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 397 GGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWP 456
W + + + +L + E + A F+ + G Y C+ + P
Sbjct: 31 MAAWVQL-WLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRY---------QVSEP 80
Query: 457 GL------PLSIVVS 465
P+ +V++
Sbjct: 81 LWTSNQSDPVELVLT 95
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 37.4 bits (86), Expect = 0.010
Identities = 8/81 (9%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 152 KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGR 211
+ + S+ L C + ++ ++ +V+ E E +
Sbjct: 10 RVAFVERGGSLWLNCSTNCPRPERGGL---ETSLRRNGTQRGLRWLARQLVDIREP-ETQ 65
Query: 212 YTCKATNEAGTAETSCTLLVQ 232
C T + +
Sbjct: 66 PVCFFRCARRTLQARGLIRTF 86
Score = 28.1 bits (62), Expect = 9.0
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK-EADSETDAGDYKVVATNELGS 754
+ ++ R + L+ E +L A E ++ A +L
Sbjct: 116 AGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 37.4 bits (86), Expect = 0.010
Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 489 SYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548
Y+ L++ + + + L +S +P+P+I W N E
Sbjct: 107 FYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRST-------GWYPQPQIQWSNNKGE 159
Query: 549 ITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ + D + A + + + T ++ S+ +
Sbjct: 160 NIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 30.8 bits (69), Expect = 1.5
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 26/101 (25%)
Query: 160 SSVTLECVVSGVPTPD---IKWYKDD-------------------SLIKGRNITYENNVA 197
L C + + + +KW + +GR + +
Sbjct: 20 EDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGIT 79
Query: 198 RFTVV----NCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
N + S G+Y C + + L V
Sbjct: 80 AGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL 120
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 37.0 bits (85), Expect = 0.011
Identities = 17/83 (20%), Positives = 21/83 (25%), Gaps = 7/83 (8%)
Query: 57 DSSVTLHWRPPQDDGHSPV--TGYVLESHDKDEFMVWNKIE----TTSTTYEVTKLTTK- 109
+ L W P G + Y E +W T +VT T
Sbjct: 19 NMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITAT 78
Query: 110 HEYMFRVAAVNAIGTGPASHNTR 132
Y RV A T S
Sbjct: 79 VPYNLRVRATLGSQTSAWSILKH 101
Score = 32.0 bits (72), Expect = 0.47
Identities = 5/62 (8%), Positives = 17/62 (27%)
Query: 580 TVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
+T L+ +++ + V + + +E + + Y
Sbjct: 116 EITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCV 175
Query: 640 QV 641
+
Sbjct: 176 KA 177
Score = 32.0 bits (72), Expect = 0.50
Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 5/105 (4%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
S EI + + V + E ++ + + +
Sbjct: 103 FNRQSTILTRPGMEITKDGFH-LVIELEDLGPQFEFLVAYWRREPGAEEHVKM---VRSG 158
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+ + Y + G S ++ V+ +A
Sbjct: 159 GIPVHLETMEPGAAYCVKAQTFVK-AIGRYSAFSQTECVEVQGEA 202
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 36.6 bits (84), Expect = 0.015
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 161 SVTLECVVSGVPTPD---IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+TL C V G + + + +K E TV+ + +++C+
Sbjct: 103 QLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTE 162
Query: 218 NE 219
+
Sbjct: 163 LD 164
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 35.9 bits (82), Expect = 0.017
Identities = 18/121 (14%), Positives = 28/121 (23%), Gaps = 13/121 (10%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD 182
P A ++ Q D +V L+C V ++W
Sbjct: 17 MDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPA 76
Query: 183 SLIKGRNITYENNVARFTVV------------NCSESSEGRYTCKATNEAGTAETSCTLL 230
R +V N + + EG YTC +
Sbjct: 77 QQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAKSLVT 135
Query: 231 V 231
V
Sbjct: 136 V 136
Score = 28.2 bits (62), Expect = 6.2
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD---------G 725
++TV GT+ L +VK S+ W + L +KR + D
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 726 ENIILELKEADSETDAGDYK-VVATNELGSATHGARVTV 763
+ + + D G+Y + T + +A + VTV
Sbjct: 101 HELSISISNVA-LADEGEYTCSIFTMPVRTAK--SLVTV 136
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 36.0 bits (83), Expect = 0.022
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKA- 216
S VTL C T + + Y++ R +F + + + GRY C
Sbjct: 20 SPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYG 78
Query: 217 TNEAGTAETSCTL 229
++ AG +E+S L
Sbjct: 79 SDTAGRSESSDPL 91
Score = 31.3 bits (71), Expect = 0.90
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDD-----SLIKGRNITYENNVARFTVVNCSESSEGRYTC 214
+VTL+C S V K+ + + ++ A F+V S S Y C
Sbjct: 116 GNVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
Query: 215 KATNEAGTAETSC-----TLLVQG 233
A + E S LLV G
Sbjct: 175 YAYDSNSPYEWSLPSDLLELLVLG 198
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 36.8 bits (85), Expect = 0.027
Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 30/179 (16%)
Query: 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT-KLTTKHEYMF 114
D V + W + H+ T E ++T V L +H+
Sbjct: 270 DDPDVQISWFVNNVEVHTAQTQ--------------THREDYNSTLRVVSALPIQHQDWM 315
Query: 115 RVAAVNAIGTGPASHNTRYVVV-KAPVDAEAP--VIQEPLKDSVAGFQSSVTLECVVSGV 171
+ K AP + P ++ + + VTL C+V+
Sbjct: 316 SGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMT--KKQVTLTCMVTDF 373
Query: 172 PTPDIK--WYKDDSLIKGRNITYE--NNVARFTV-----VNCSESSEG-RYTCKATNEA 220
DI W + T ++ + + V E Y+C +E
Sbjct: 374 MPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 432
Score = 30.3 bits (68), Expect = 2.7
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 14/96 (14%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGV--PTPDIK--WYKDDSLIKGR---------NITY 192
I P V S + CVV V PD++ W+ ++ + N T
Sbjct: 242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTL 301
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
V+ + + S + CK N+ A T
Sbjct: 302 R-VVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERT 336
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 36.6 bits (84), Expect = 0.029
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 150 PLKDSVAGFQSSVTLECVVSGV-PTP-DIKWYKDDSLIKGRNITY----ENNVAR----F 199
D F ++ L C+VSG P I W +D ++ T E +A
Sbjct: 15 SSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSEL 74
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCT 228
T+ S+ YTC+ T + T E S
Sbjct: 75 TLSQKHWLSDRTYTCQVTYQGHTFEDSTK 103
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 35.1 bits (80), Expect = 0.048
Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 16/156 (10%)
Query: 44 PGAPDTPEIVGRS--DSSVTLHWRPPQDDGHSPV-TGYVLESHDKDEFMVWNKIETTSTT 100
D + V + L W + V + ++D T +
Sbjct: 2 EDPSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKS 61
Query: 101 YEVTKLTTK--HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
+T T Y RV AV+A G T + P +
Sbjct: 62 CNLTVETGNLTELYYARVTAVSAGGRSATK-MTDRFSSLQHTTLKPPDVT------CISK 114
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYEN 194
S+ + PTP D + +I ++
Sbjct: 115 VRSIQ----MIVHPTPTPIRAGDGHRLTLEDIFHDL 146
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 35.3 bits (81), Expect = 0.051
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPD----IKWYKDDSLIKGRNITY--------EN 194
I P V G + + CVV + D W+ DD +
Sbjct: 20 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR 79
Query: 195 NVARFTVVNCSESSEGRYTCKATNEA 220
+V+ +V + + CK + A
Sbjct: 80 SVSELPIVERDWLNGKTFKCKVNSGA 105
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 34.9 bits (80), Expect = 0.086
Identities = 34/253 (13%), Positives = 79/253 (31%), Gaps = 44/253 (17%)
Query: 5 SATLTIVKFEDKDLGDYT-----ISLSNALGQASATTKVTLLSAPGAPDTPE-------- 51
+++I D G Y + ++ A T++++ + P AP
Sbjct: 73 DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQ 132
Query: 52 --------IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
G S +TL W ++ T + + + + T +V
Sbjct: 133 HTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVS-YSIHSTAKVVLTREDV 191
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT 163
+ + VA + G T + V V Q+P++ ++ V
Sbjct: 192 HS-----QVICEVA--HVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRA-----ENQVN 239
Query: 164 LECVVSGV-PTP-DIKWYKDDSLIKGRNITYENN--------VARFTVVNCSESSEGRYT 213
+ C V P + W ++ ++ + + ++ V + + + T
Sbjct: 240 VTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLT 299
Query: 214 CKATNEAGTAETS 226
C+ ++ A +
Sbjct: 300 CQVEHDGQPAVSK 312
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 34.6 bits (79), Expect = 0.088
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 159 QSSVTLECVVSGVPTPD---IKWYKDDS---------LIKGRNITYENNVARFTVVNCSE 206
L C+V +P+ + W ++ S L + N TY + + V
Sbjct: 28 SLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTY-SASSAVPVSTQDW 86
Query: 207 SSEGRYTCKATNEA 220
S R+TC +E
Sbjct: 87 LSGERFTCTVQHEE 100
Score = 28.1 bits (62), Expect = 9.1
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 159 QSSVTLECVVSGVPTPDI--KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYT 213
S VTL C+V G DI +W +D + + N + +
Sbjct: 133 LSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFF 189
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 34.9 bits (80), Expect = 0.092
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
VTL C + YK+D + F + + + G YTC+ ++
Sbjct: 39 GHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQ-ESFNMSPVTTAHAGNYTCRGSHP 96
Query: 220 AGTAETS 226
S
Sbjct: 97 HSPTGWS 103
Score = 34.5 bits (79), Expect = 0.12
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDD----SLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
V L+C S + +K+ I + A F++ + G Y C
Sbjct: 134 ERVILQCW-SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCY 192
Query: 216 ATNEAGTAETS 226
+ + S
Sbjct: 193 GSVTHTPYQLS 203
Score = 28.3 bits (63), Expect = 9.8
Identities = 34/214 (15%), Positives = 53/214 (24%), Gaps = 47/214 (21%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367
FLS PS +VP G T + K+ I R Q +
Sbjct: 26 FLSAWPS-AVVPRGGHVTLRCHYRHRFNNFMLYKED----RIHIPIFHGRIFQESFNMSP 80
Query: 368 VTQDD-----------ETDIG------VLALNVKSVSKLKWLDF--------GS------ 396
VT + G + + V + L G
Sbjct: 81 VTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQC 140
Query: 397 ----GGWWFESKYKDD----SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
F +K+ I + A F++ + G Y C +
Sbjct: 141 WSDIMFEHF-FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP 199
Query: 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQ 482
+ P PL IVV+ + +Q
Sbjct: 200 YQLSA--PSDPLDIVVTGPYEKPSLSAQPGPKVQ 231
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.4 bits (76), Expect = 0.094
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 26/104 (25%)
Query: 160 SSVTLECVVS---GVPTPDIKWYKDDS------LIKGRNITYENNVA---RFTVV----- 202
L C +S ++ WY+ G++ E R ++
Sbjct: 22 DEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIG 81
Query: 203 ---------NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
N S EG YTC + + E + L V+
Sbjct: 82 EGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW 125
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 34.5 bits (79), Expect = 0.096
Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 11/81 (13%)
Query: 159 QSSVTLECVVSGVPTPD---IKWYKDDS-------LIKGRNITYENNVARFTVVNCSESS 208
S L C ++G+ W + Y + + +
Sbjct: 19 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY-SVSSVLPGCAEPWNH 77
Query: 209 EGRYTCKATNEAGTAETSCTL 229
+TC A + TL
Sbjct: 78 GKTFTCTAAYPESKTPLTATL 98
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 32.9 bits (75), Expect = 0.10
Identities = 24/118 (20%), Positives = 33/118 (27%), Gaps = 32/118 (27%)
Query: 146 VIQEPLKDSVAGFQ-SSVTLECVVSGVPTPD-----IKWYKDD--------SLIKGRNIT 191
V+Q P V GF SVTL C + + W + +G + +
Sbjct: 3 VVQAP--TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 192 YENNVARFTVVNCSESS--------------EGRYTCK-ATNEAGTAETSCTLLVQGK 234
+ F EG YTC T G+ L V K
Sbjct: 61 ESKRL-EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 34.4 bits (79), Expect = 0.11
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 150 PLKDSVAGFQSSVTLECVVSGV--PTPDIKWYKDDSLIKG---------RNITYENNVAR 198
P +D + + V+L C+V G ++W + + ++ ++
Sbjct: 250 PSRDELTK--NQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL-YSK 306
Query: 199 FTVVNCSESSEGRYTCKATNEA 220
TV ++C +EA
Sbjct: 307 LTVDKSRWQQGNVFSCSVMHEA 328
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 34.2 bits (78), Expect = 0.11
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCK 215
+V L+C V +++ + A F++ + G Y C
Sbjct: 22 ETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY 80
Query: 216 ATNEAGTAETS 226
+ + S
Sbjct: 81 GSVTHSPYQLS 91
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 32.0 bits (73), Expect = 0.17
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 160 SSVTLECVVSGVPTPDI----KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
+ VT+ C S D+ + KD S ++ F + +E+ G Y+C
Sbjct: 24 TFVTVVC--SYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
Query: 216 ATNEAGTAETS 226
+ +E S
Sbjct: 82 YSKGITWSERS 92
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 32.1 bits (72), Expect = 0.19
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 160 SSVTLECVVS-GVPTPDIKWYK----DDSLIKGRNITYENN----VARFTVVNCSESSEG 210
LEC V P + W K ++ R +++ + G
Sbjct: 27 DPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNG 86
Query: 211 RYTCKATNEAGTAETSCTLLVQGKEIKESARH 242
Y C A ++ E+ T L H
Sbjct: 87 SYRCSANFQSNLIESHSTTLYVTDVKHHHHHH 118
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 33.3 bits (75), Expect = 0.21
Identities = 15/153 (9%), Positives = 39/153 (25%), Gaps = 17/153 (11%)
Query: 25 LSNALGQAS-ATTKVTLLSAPGAPDTPEIVG---RSDSSVTLHWRPPQDDGHSPVTGYVL 80
+ L +A + V + P+ + + HW G L
Sbjct: 7 TAAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQL 66
Query: 81 ESHDKDEFMVWNKIET---------TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
++ + + S + + + Y ++ + +
Sbjct: 67 FYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVD-EKCFSV 125
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTL 164
+V D + L S+ G + + +
Sbjct: 126 DEIV---QPDPPIALNWTLLNVSLTGIHADIQV 155
Score = 30.9 bits (69), Expect = 1.2
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 53 VGRSDSSVTLHWRPPQD---DGHSPVTGYVLESHDKDEFMVWNKIE-TTSTTYEVTKLTT 108
+ + + + W P++ V Y L+ + +E W ++ +T+ V L
Sbjct: 146 LTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE-TKWKMMDPILTTSVPVYSLKV 204
Query: 109 KHEYMFRVAA 118
EY RV +
Sbjct: 205 DKEYEVRVRS 214
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 31.7 bits (71), Expect = 0.21
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
+ YI++ + KNS+ K AT+ YT++ L+ Y Q+ + G
Sbjct: 34 HISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYG 85
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 33.2 bits (75), Expect = 0.21
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 11/115 (9%)
Query: 21 YTISLSNALGQASATTKVTLLSA-----PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPV 75
T+ + G + AP + ++V + W Q +
Sbjct: 78 VTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFER 137
Query: 76 T-----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125
+ H +E + ++ + LT +Y F+V G
Sbjct: 138 HLEFEARTLSPGHTWEEAPLLT-LKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 32.6 bits (74), Expect = 0.35
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 160 SSVTLECVVSGVPTPDIKWYKD----DSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
+V L+C S V +++ D+L + A F++ ++ G Y C
Sbjct: 23 ETVILQCW-SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY 81
Query: 216 ATNEAGTAETS 226
+ + S
Sbjct: 82 GSVTHSPYQVS 92
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 31.2 bits (71), Expect = 0.37
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 160 SSVTLECVVSGVPTPDI----KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
+ VT+ C S D+ + KD S ++ F + +E+ G Y+C
Sbjct: 24 TFVTVVC--SYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
Query: 216 ATNEAGTAETS 226
+ +E S
Sbjct: 82 YSKGITWSERS 92
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 32.9 bits (75), Expect = 0.40
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
Query: 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV--PTPDIK--WY 179
+ +H + + + P + + CVV V P++K WY
Sbjct: 229 SCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWY 288
Query: 180 KDDSLIKGR---------NITYENNVARFTVVNCSESSEGRYTCKATNEA 220
D + N TY V+ TV++ + Y CK +N+A
Sbjct: 289 VDGVEVHNAKTKPREEQYNSTYR-VVSVLTVLHQDWLNGKEYKCKVSNKA 337
Score = 32.2 bits (73), Expect = 0.73
Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 34/181 (18%)
Query: 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY------EVTKLTTK 109
D V +W + H+ T + E ++TY V
Sbjct: 279 EDPEVKFNWYVDGVEVHNAKTK--------------PREEQYNSTYRVVSVLTVLHQDWL 324
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169
+ ++ N PA K P +D + + V+L C+V
Sbjct: 325 NGKEYKCKVSN--KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTK--NQVSLTCLVK 380
Query: 170 GVPTPDIK--WYKDDSLIKGRNIT--YENNVARFTV-----VNCSESSEG-RYTCKATNE 219
G DI W + T ++ F + V+ S +G ++C +E
Sbjct: 381 GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 440
Query: 220 A 220
A
Sbjct: 441 A 441
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 32.6 bits (74), Expect = 0.48
Identities = 34/175 (19%), Positives = 52/175 (29%), Gaps = 22/175 (12%)
Query: 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFR 115
D V W + H+ T E F V + + + K E+ R
Sbjct: 260 DDPEVQFSWFVDNVEVHTAQT-QPREEQFNSTFRVVSALPIMHQDWLNGK-----EFKCR 313
Query: 116 VAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD 175
V + PA K A P K+ +A V+L C+++ D
Sbjct: 314 VNS----AAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAK--DKVSLTCMITDFFPED 367
Query: 176 IK--WYKDDSLIKGRNITYE--NNVARFTV-----VNCSESSEG-RYTCKATNEA 220
I W D + T + + V V S G +TC +E
Sbjct: 368 ITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG 422
Score = 30.7 bits (69), Expect = 2.4
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 136 VKAPVDAEAPVIQEPLKDS-VAGFQSSVTLECVVSGVPTPD-----IKWYKDDSLIKGR- 188
V + V P K + + CVV + + D W+ D+ +
Sbjct: 221 CICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDI-SKDDPEVQFSWFVDNVEVHTAQ 279
Query: 189 --------NITYENNVARFTVVNCSESSEGRYTCKATNEA 220
N T+ V+ +++ + + C+ + A
Sbjct: 280 TQPREEQFNSTFR-VVSALPIMHQDWLNGKEFKCRVNSAA 318
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 32.0 bits (72), Expect = 0.58
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE----TTSTTYEVTKLTTK---HEY 112
V L W P G+ Y + W ++E T + L + +++
Sbjct: 21 VYLTWLPGL--GNPQDVTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKF 78
Query: 113 MFRVAAVNAIGTGP 126
RV V+ P
Sbjct: 79 KGRVRTVSPSSKSP 92
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.7 bits (69), Expect = 0.63
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 703 SIVWFRNNKPLL------------SSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750
+ WF + S K R D ++ L + + + D Y +
Sbjct: 36 QLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKV-QKEDNSTYIMRVLK 94
Query: 751 ELGSATHGARVTVDV-EKVGRPSIN 774
+ G+ ++ + V + V +P I
Sbjct: 95 KTGN-EQEWKIKLQVLDPVPKPVIK 118
Score = 29.9 bits (67), Expect = 1.4
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 532 YFGFPRPEISWMKNGAEITDSKA-CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590
++ F + + W ++ +SK R+ +D ++ + I V + D STY + G+
Sbjct: 40 FYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNE 99
Query: 591 -SLDLSLQVL 599
+ LQVL
Sbjct: 100 QEWKIKLQVL 109
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 32.4 bits (73), Expect = 0.66
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 161 SVTLECVVSGVPTPD---IKWYKDD-SLIKGRNITYENN--VARFTVVNCSESSEGRYTC 214
C SG P P + K D +++ ++ + ++ VA FT+ G + C
Sbjct: 343 KFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVC 402
Query: 215 KATNEAGTAETSCTLLVQ 232
AG E + V+
Sbjct: 403 SVNTVAGMVEKPFNISVK 420
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 29.2 bits (66), Expect = 1.3
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 535 FPRP-EISWMKNGAEITD 551
P I +KNG I D
Sbjct: 31 HPPDISIELLKNGEVIAD 48
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 30.5 bits (68), Expect = 1.8
Identities = 25/157 (15%), Positives = 43/157 (27%), Gaps = 14/157 (8%)
Query: 59 SVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE--TTSTTYEVTKLTT----KHEY 112
LHW P S Y + WN I + + +Y++T +T + Y
Sbjct: 19 HHILHWTPIPQQSESTC--YEVALLRYGI-ESWNSISQCSQTLSYDLTAVTLDLYHSNGY 75
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
RV AV+ + V V E + ++ +
Sbjct: 76 RARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFI-----LGKIQLPRPKMA 130
Query: 173 TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209
+ S + I +FT + E
Sbjct: 131 PAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHE 167
Score = 28.6 bits (63), Expect = 6.4
Identities = 4/77 (5%), Positives = 16/77 (20%), Gaps = 10/77 (12%)
Query: 53 VGRSDSSVTLHWRPPQDDGHSP----------VTGYVLESHDKDEFMVWNKIETTSTTYE 102
+ + + + P+ Y + + + +
Sbjct: 111 LEIHNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFS 170
Query: 103 VTKLTTKHEYMFRVAAV 119
+ E+ +V
Sbjct: 171 LLTSGEVGEFCVQVKPS 187
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 31.1 bits (70), Expect = 1.8
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPD---IKWYKDDSLIKGRNITYENNVARFTVVN 203
+ P + + S L C ++G+ W + + ++V +
Sbjct: 251 LHRPALEDLL-LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS 309
Query: 204 ----CSESSEG--RYTCKATNEAGTAETSCT 228
C+E +TC A + T
Sbjct: 310 VLPGCAEPWNHGKTFTCTAAYPESKTPLTAT 340
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 30.6 bits (70), Expect = 2.1
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQ 327
+ + P L LP+ + PH+G A
Sbjct: 255 TDPEPLPPGHPLYALPNAVITPHIGSAGRT 284
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 30.2 bits (69), Expect = 2.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 309 LSKLPSVTLVPHLGDATFQ 327
L L + ++PH+G AT +
Sbjct: 284 LLTLKNCVILPHIGSATHR 302
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 30.4 bits (68), Expect = 2.4
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 11/74 (14%)
Query: 158 FQSSVTLECVVSGVPTPD--IKWYKDDSLIKGRNITYEN---------NVARFTVVNCSE 206
+ T C V G D + W + G +R T+
Sbjct: 311 LRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLW 370
Query: 207 SSEGRYTCKATNEA 220
++ TC + +
Sbjct: 371 NAGTSVTCTLNHPS 384
Score = 28.8 bits (64), Expect = 7.4
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIF--IDEETSTIAIYSVVRADTS------TYT 580
EV F P + W+++ E+ S ++T +SV+R TYT
Sbjct: 424 EVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYT 483
Query: 581 VTATNAAGSTSLDLSLQV 598
++ T L+ S +
Sbjct: 484 CVVSHEDSRTLLNASRSL 501
Score = 28.8 bits (64), Expect = 9.1
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 16/134 (11%)
Query: 52 IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT-KLTTKH 110
+VG L W G P G ++ ++ + +LT
Sbjct: 321 VVGSDLKDAHLTWEV---AGKVPTGGVEEGLLERH----------SNGSQSQHSRLTLPR 367
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
+V P+ R + ++ P + L S +++ L C VSG
Sbjct: 368 SLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSG 427
Query: 171 VPTPDI--KWYKDD 182
P+I W +D
Sbjct: 428 FSPPNILLMWLEDQ 441
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 30.3 bits (69), Expect = 2.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 309 LSKLPSVTLVPHLGDATFQ 327
L ++ L PH+G AT +
Sbjct: 300 YRSLDNIFLTPHIGSATHE 318
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 29.7 bits (67), Expect = 3.1
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 13/80 (16%)
Query: 159 QSSVTLECVVSGV--PTPDIKWYKDDSLIKG----------RNITYENNVARFTVVNCSE 206
+ TL C++S + W D S +K N Y + ++
Sbjct: 126 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKY-AASSYLSLTPEQW 184
Query: 207 SSEGRYTCKATNEAGTAETS 226
S Y+C+ T+E T E +
Sbjct: 185 KSHRSYSCQVTHEGSTVEKT 204
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 29.8 bits (68), Expect = 3.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 309 LSKLPSVTLVPHLGDATF 326
LP+ L PH+G A
Sbjct: 275 YYDLPNTFLFPHIGSAAT 292
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 29.9 bits (68), Expect = 3.6
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 309 LSKLPSVTLVPHLGDATF 326
L ++ VTL H+G
Sbjct: 293 LIEMKHVTLTTHIGGVAI 310
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 29.6 bits (66), Expect = 3.8
Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 28/120 (23%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK-----WY---------------- 179
D + ++ + +VT+ C + +I W+
Sbjct: 2 DLKVEMMAGG--TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFF 59
Query: 180 --KDDSLIKGRNITYE---NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
++ G ++ + A + G Y C+ A+ + L V
Sbjct: 60 GDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119
Score = 28.9 bits (64), Expect = 5.8
Identities = 9/57 (15%), Positives = 27/57 (47%)
Query: 6 ATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
A+L + + ++ G+Y + +A T ++ ++++P + + VG ++
Sbjct: 82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKY 138
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 29.2 bits (65), Expect = 4.2
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 13/81 (16%)
Query: 159 QSSVTLECVVSG--VPTPDIKWYKDDSLIKGRNITYENNVA----------RFTVVNCS- 205
+ TL C+ G ++ W+ + + T R V
Sbjct: 137 KQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFW 196
Query: 206 ESSEGRYTCKATNEAGTAETS 226
+ + C+ + E
Sbjct: 197 HNPRNHFRCQVQFHGLSEEDK 217
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome,
unknown function; 1.72A {Clostridium thermocellum} PDB:
3pdg_A
Length = 190
Score = 29.2 bits (65), Expect = 4.3
Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 21/135 (15%)
Query: 19 GDYTISL--SNALGQASATTKVTLLSAPGAPDTPEI-------VGRSDSSVTLHWRPPQD 69
G Y + + G+ + +L T ++ V + + +
Sbjct: 61 GAYNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVKLTAPKSNVVAYGNEFLKITATASDS 120
Query: 70 DGHSPVTGYVLESHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPA 127
DG ++ +F+V ++ YE + + V A +
Sbjct: 121 DG--KISRV--------DFLVDGEVIGSDREAPYEYEWKAVEGNHEISVIAYDDDDAAST 170
Query: 128 SHNTRYVVVKAPVDA 142
+ + V +A ++
Sbjct: 171 PDSVKIFVKQARLEH 185
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 29.5 bits (67), Expect = 4.4
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 304 PAV-EFLSKLPSVTLVPHLGDATFQ 327
PA+ P+ L+PH G AT +
Sbjct: 289 PAIRSEFHTTPNTVLMPHQGSATVE 313
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 29.5 bits (67), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 309 LSKLPSVTLVPHLGDATF 326
L KL +V L PH+G A+F
Sbjct: 277 LFKLDNVVLTPHIGSASF 294
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural
genomics, PSI, protein struc initiative; 1.80A
{Agrobacterium tumefaciens str} SCOP: c.47.1.19
Length = 270
Score = 29.3 bits (65), Expect = 4.5
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI 176
A +N + E + P+ AG + + + +G +
Sbjct: 118 AILNGRDHVKGADVRGIYDRLDAFKREGQGLNVPVSSKFAGDEVEIDIG-AGNGKADVVV 176
Query: 177 KWYKDDSLIK-------GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
++ + + G+ ++Y ++V V + S A+ A + C +
Sbjct: 177 AYFTREQTVDVQKGENQGKKMSYWHSVYDVQTVGMWDGSPMTVKLPASVVAKVKKGGCAV 236
Query: 230 LVQGKEIKESARHIITA 246
L+Q I+ A
Sbjct: 237 LLQTANASGDPAAIVGA 253
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 27.7 bits (62), Expect = 4.7
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI-----KGRNITYENNVARFTVVNCSESSEGRYTC 214
S VT C V + ++ + + ARF + + SE + G Y C
Sbjct: 24 SHVTFVCRGP-VGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRC 82
Query: 215 KATNEAGTAETSCT--LLVQG 233
+E S LLV+
Sbjct: 83 IYYKPPKWSEQSDYLELLVKE 103
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 27.9 bits (62), Expect = 5.6
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 31/106 (29%)
Query: 160 SSVTLECVVSGVPTP----DIKWYKDDS---------LIKGRNITYENNVARF------- 199
+ L C + P DI+W + ++ + Y++
Sbjct: 21 ETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT 80
Query: 200 -----------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
V N S G Y CK G A L+V K
Sbjct: 81 SNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 27.9 bits (61), Expect = 5.8
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 12/83 (14%)
Query: 160 SSVTLECVVS-GVPTPDIKWYK---------DDSLIKGRNITYENNVARF--TVVNCSES 207
+EC V V P++ W K + + +V F S
Sbjct: 30 ELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLS 89
Query: 208 SEGRYTCKATNEAGTAETSCTLL 230
G Y+C + + +
Sbjct: 90 DNGSYSCSTNFNSQVINSHSVTI 112
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 29.1 bits (66), Expect = 6.1
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 309 LSKLPSVTLVPHLGDATFQV 328
L P+ PH+G A V
Sbjct: 281 LLAHPNTLFTPHIGSAVRAV 300
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 28.7 bits (65), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 304 PAV-EFLSKLPSVTLVPHLGDATFQ 327
P V E L L +V L+PH+G T +
Sbjct: 282 PEVPEKLFGLENVVLLPHVGSGTVE 306
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 29.2 bits (66), Expect = 7.3
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 698 ASPAPSIVWFRN 709
A+ +++WFR+
Sbjct: 1 ATRGANVIWFRH 12
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 28.8 bits (64), Expect = 7.3
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 20/118 (16%)
Query: 128 SHNTRYVVVKAPVDAEAP--VIQEPLKDSVAGFQSSVTLECVVSG--VPTPDIKWYKDDS 183
TR +V++ + P + EP ++ TL C+ +G ++ W+ +
Sbjct: 132 GPGTRLLVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGK 190
Query: 184 LIKGRNITYENNVARFTVVNCS---------------ESSEGRYTCKATNEAGTAETS 226
+ T + +N S ++ + C+ +
Sbjct: 191 EVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDE 248
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 28.5 bits (64), Expect = 7.6
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 159 QSSVTLECVVSGVPTPD--IKWYKDDSLIKGRNITYENNV----------ARFTVVNCSE 206
++ C ++ D +KW D S + + + + T+
Sbjct: 165 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY 224
Query: 207 SSEGRYTCKATNEAGTAETSCTL 229
YTC+AT++ T+ +
Sbjct: 225 ERHNSYTCEATHKTSTSPIVKSF 247
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 28.6 bits (64), Expect = 7.8
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPD--IKWYKDDSLIKGRNITYENNVA---- 197
AP + S ++ C ++ D +KW D S + + +
Sbjct: 154 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS 213
Query: 198 ------RFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
T+ YTC+AT++ T+ +
Sbjct: 214 TYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 251
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 28.4 bits (63), Expect = 7.9
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP-DIKWYK 180
GT V V P E + TL C+ G P ++ W+
Sbjct: 106 GTRLTVLEDLRQVTPPKVSLFEPSKAEIAN------KQKATLVCLARGFFPDHVELSWWV 159
Query: 181 DDSLIKGRNITY-----ENN-----VARFTV-VNCSESSEGRYTCKATNEAGTAETS 226
+ + T E+N +R V + + C+ + E
Sbjct: 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDK 216
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD;
1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Length = 482
Score = 28.9 bits (65), Expect = 8.4
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 690 IRLMAKVKASPAPSIVWFRN 709
IR + K P + W
Sbjct: 26 IRALKSGKQGDGPVVYWMSR 45
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 26.9 bits (60), Expect = 9.4
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 535 FPRP-EISWMKNGAEITD 551
P EI +KNG +I
Sbjct: 31 HPPHIEIQMLKNGKKIPK 48
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 28.1 bits (63), Expect = 9.4
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 159 QSSVTLECVVSGV--PTPDIKWYKDDSLIK---------GRNITYENNVARFTVVNCSES 207
+ TL C+++G + W D + I + Y + T+ +
Sbjct: 129 TNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKY-MATSYLTMTADAWK 187
Query: 208 SEGRYTCKATNEAGTAETS 226
S + CK T+ T E S
Sbjct: 188 SRNTFICKVTHGGNTVEKS 206
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 27.4 bits (61), Expect = 9.6
Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 535 FPRP-EISWMKNGAEITD 551
P I+ MK+G +
Sbjct: 51 HPPKISITLMKDGVPMEG 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.369
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,591,067
Number of extensions: 688167
Number of successful extensions: 4609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3297
Number of HSP's successfully gapped: 1919
Length of query: 803
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 702
Effective length of database: 3,881,772
Effective search space: 2725003944
Effective search space used: 2725003944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.2 bits)