BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2777
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 16 PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIET 49
P PK FTFD VYDA S +Y+E PLI++
Sbjct: 63 PGELPKTFTFDAVYDASSKQADLYDETVRPLIDS 96
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 76 PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
P PK FTFD VYDA S +Y+E PLI+
Sbjct: 63 PGELPKTFTFDAVYDASSKQADLYDETVRPLID 95
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIET 49
PK FTFD VYD + ++Y+E PL+++
Sbjct: 67 PKTFTFDAVYDWNAKQFELYDETFRPLVDS 96
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 80 PKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
PK FTFD VYD + ++Y+E PL++
Sbjct: 67 PKTFTFDAVYDWNAKQFELYDETFRPLVD 95
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
Length = 349
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
K F FD V+ TT+ +Y EIA P+I+++
Sbjct: 44 KSFNFDRVFHGNETTKNVYEEIAAPIIDSAI 74
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 81 KGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
K F FD V+ TT+ +Y EIA P+I+
Sbjct: 44 KSFNFDRVFHGNETTKNVYEEIAAPIID 71
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
With Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
With Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
With Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
With Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 7 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIETSF 51
T +IVN P PK F+FD Y + ++ E Q+Y +I +++ +F
Sbjct: 34 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 67 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIE 108
T +IVN P PK F+FD Y + ++ E Q+Y +I +++
Sbjct: 34 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 83
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
With Mg-Amppcp
Length = 366
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 7 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIETSF 51
T +IVN P PK F+FD Y + ++ E Q+Y +I +++ +F
Sbjct: 34 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 67 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIE 108
T +IVN P PK F+FD Y + ++ E Q+Y +I +++
Sbjct: 34 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 83
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 7 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIETSF 51
T +IVN P PK F+FD Y + ++ E Q+Y +I +++ +F
Sbjct: 50 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 102
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 67 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIE 108
T +IVN P PK F+FD Y + ++ E Q+Y +I +++
Sbjct: 50 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 99
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
With Mg-Adp
Length = 367
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 7 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIETSF 51
T +IVN P PK F+FD Y + ++ E Q+Y +I +++ +F
Sbjct: 34 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 67 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIE 108
T +IVN P PK F+FD Y + ++ E Q+Y +I +++
Sbjct: 34 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 83
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 23 FTFDGVYDAKSTTEQIYNEIAYPLIETSFYR 53
F FD +D + E +Y A PL+ET F R
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFER 171
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+ F FD +D ++ E +Y A PL++T F
Sbjct: 101 QAFCFDFAFDETASNEVVYRFTARPLVQTIF 131
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+ F FD +D ++ E +Y A PL++T F
Sbjct: 49 QAFCFDFAFDETASNEVVYRFTARPLVQTIF 79
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+ F FD +D ++ E +Y A PL++T F
Sbjct: 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIF 151
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2
Gikin2a Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2
Gikin2a Motor Domain
Length = 350
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 13 ASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
A+ P+ FTFD VYD S I+ PLI+
Sbjct: 48 ATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLID 83
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 16 PSAPPK-GFTFDGVYDAKSTTEQIYNEIA 43
P+ PP+ F+FD V+ S ++++ EIA
Sbjct: 77 PAPPPRHDFSFDRVFPPGSGQDEVFEEIA 105
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 76 PSAPPK-GFTFDGVYDAKSTTEQIYNEIA 103
P+ PP+ F+FD V+ S ++++ EIA
Sbjct: 77 PAPPPRHDFSFDRVFPPGSGQDEVFEEIA 105
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 23 FTFDGVYDAKSTTEQIYNEIAYPLIET 49
F FD V+D ST +++ P++ +
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRS 100
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 9 SIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
++V AS P + FD V+ + ++ EQ+YN+ A +++
Sbjct: 38 TVVIASKP------YAFDRVFQSSTSQEQVYNDCAKKIVK 71
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 69 SIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
++V AS P + FD V+ + ++ EQ+YN+ A +++
Sbjct: 38 TVVIASKP------YAFDRVFQSSTSQEQVYNDCAKKIVK 71
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 9 SIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
++V AS P + FD V+ + ++ EQ+YN+ A +++
Sbjct: 38 TVVIASKP------YAFDRVFQSSTSQEQVYNDCAKKIVK 71
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 69 SIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
++V AS P + FD V+ + ++ EQ+YN+ A +++
Sbjct: 38 TVVIASKP------YAFDRVFQSSTSQEQVYNDCAKKIVK 71
>pdb|3IJD|A Chain A, Uncharacterized Protein Cthe_2304 From Clostridium
Thermocellum Binds Two Copies Of 5-Methyl-5,6,7,8-
Tetrahydrofolic Acid
pdb|3IJD|B Chain B, Uncharacterized Protein Cthe_2304 From Clostridium
Thermocellum Binds Two Copies Of 5-Methyl-5,6,7,8-
Tetrahydrofolic Acid
Length = 315
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 22 GFTFDG--VYDAKSTTEQIYNEIAYPLIETSFYRDGLIDRAVYSE 64
G DG +YD + E++ E +P IET ID +YSE
Sbjct: 45 GLDIDGLVIYDLQDEKERVSEERPFPFIET-------IDPQIYSE 82
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
K + FD V+ + ++ EQ+YN+ A +++
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVK 71
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 81 KGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
K + FD V+ + ++ EQ+YN+ A +++
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVK 71
>pdb|1S5L|A Chain A, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|AA Chain a, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|2AXT|A Chain A, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|AA Chain a, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
pdb|3KZI|A Chain A, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|A Chain A, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|A Chain A, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|G Chain G, Fs X-Ray Diffraction Of Photosystem Ii
Length = 344
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNE 101
IA P ++ R+ + +Y I A PS+ G F +++A S E +YN
Sbjct: 53 IAAPPVDIDGIREPVSGSLLYGNNI---ITGAVVPSSNAIGLHFYPIWEAASLDEWLYNG 109
Query: 102 IAYPLI 107
Y LI
Sbjct: 110 GPYQLI 115
>pdb|1IZL|A Chain A, Crystal Structure Of Photosystem Ii
pdb|1IZL|J Chain J, Crystal Structure Of Photosystem Ii
Length = 360
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNE 101
IA P ++ R+ + +Y I A PS+ G F +++A S E +YN
Sbjct: 53 IAAPPVDIDGIREPVSGSLLYGNNI---ITGAVVPSSNAIGLHFYPIWEAASLDEWLYNG 109
Query: 102 IAYPLI 107
Y LI
Sbjct: 110 GPYQLI 115
>pdb|3ARC|A Chain A, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
pdb|3ARC|AA Chain a, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
Length = 344
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNE 101
IA P ++ R+ + +Y I A PS+ G F +++A S E +YN
Sbjct: 53 IAAPPVDIDGIREPVSGSLLYGNNI---ITGAVVPSSNAIGLHFYPIWEAASLDEWLYNG 109
Query: 102 IAYPLI 107
Y LI
Sbjct: 110 GPYQLI 115
>pdb|3A0B|A Chain A, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|AA Chain a, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|A Chain A, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|AA Chain a, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 344
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNE 101
IA P ++ R+ + +Y I A PS+ G F +++A S E +YN
Sbjct: 53 IAAPPVDIDGIREPVSGSLLYGNNI---ITGAVVPSSNAIGLHFYPIWEAASLDEWLYNG 109
Query: 102 IAYPLI 107
Y LI
Sbjct: 110 GPYQLI 115
>pdb|1W5C|A Chain A, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|G Chain G, Photosystem Ii From Thermosynechococcus Elongatus
pdb|4IXQ|A Chain A, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|AA Chain a, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|A Chain A, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|AA Chain a, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 360
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNE 101
IA P ++ R+ + +Y I A PS+ G F +++A S E +YN
Sbjct: 53 IAAPPVDIDGIREPVSGSLLYGNNI---ITGAVVPSSNAIGLHFYPIWEAASLDEWLYNG 109
Query: 102 IAYPLI 107
Y LI
Sbjct: 110 GPYQLI 115
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 61 VYSEKCTCSIVNASDPSAPPKGFTFDGVYDA 91
++SE C + P PK F+F+ Y A
Sbjct: 245 IFSENLMCPVCGIGFPEITPKLFSFNSPYGA 275
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 16 PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
P + KG F G YDA+ E+ +E+ ++E
Sbjct: 297 PGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVE 329
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 76 PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
P + KG F G YDA+ E+ +E+ ++E
Sbjct: 297 PGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVE 329
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 16 PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
P + KG F G YDA+ E+ +E+ ++E
Sbjct: 297 PGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVE 329
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 76 PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
P + KG F G YDA+ E+ +E+ ++E
Sbjct: 297 PGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVE 329
>pdb|3E81|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
Length = 164
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 23 FTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDP 76
+ F GV D S E++ NE+ L + ++ D L D A ++ + V AS P
Sbjct: 72 YLFQGVVDKLSAAEELCNELGINLEQVAYIGDDLND-AKLLKRVGIAGVPASAP 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,437,766
Number of Sequences: 62578
Number of extensions: 128462
Number of successful extensions: 264
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 53
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)