Query psy2777
Match_columns 108
No_of_seqs 163 out of 1128
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:37:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 99.8 6.4E-21 1.4E-25 151.0 5.0 106 1-108 31-153 (574)
2 KOG0242|consensus 99.7 9E-19 2E-23 141.8 1.3 87 20-108 52-152 (675)
3 cd01368 KISc_KIF23_like Kinesi 99.7 3.9E-18 8.4E-23 129.1 3.6 103 4-108 29-149 (345)
4 cd01371 KISc_KIF3 Kinesin moto 99.7 6.7E-18 1.5E-22 127.1 2.6 106 1-108 27-150 (333)
5 cd01370 KISc_KIP3_like Kinesin 99.7 6.4E-18 1.4E-22 127.5 1.5 88 19-108 52-154 (338)
6 cd01367 KISc_KIF2_like Kinesin 99.7 3.4E-17 7.3E-22 122.9 4.0 101 6-108 31-149 (322)
7 KOG0243|consensus 99.7 4.9E-17 1.1E-21 134.7 5.1 102 5-108 79-201 (1041)
8 KOG0245|consensus 99.7 6.4E-17 1.4E-21 133.4 5.1 102 4-108 31-157 (1221)
9 cd01365 KISc_KIF1A_KIF1B Kines 99.6 6.6E-17 1.4E-21 122.7 3.5 101 6-108 30-156 (356)
10 cd01376 KISc_KID_like Kinesin 99.6 7.8E-17 1.7E-21 120.7 3.2 100 6-108 33-145 (319)
11 cd01373 KISc_KLP2_like Kinesin 99.6 2.1E-16 4.5E-21 119.3 5.1 88 19-108 39-153 (337)
12 cd01375 KISc_KIF9_like Kinesin 99.6 1.3E-16 2.9E-21 120.2 3.6 104 2-108 22-149 (334)
13 cd01364 KISc_BimC_Eg5 Kinesin 99.6 2.2E-16 4.7E-21 119.6 2.9 102 5-108 32-157 (352)
14 cd01374 KISc_CENP_E Kinesin mo 99.6 2.5E-16 5.5E-21 117.9 2.5 89 18-108 37-139 (321)
15 cd01369 KISc_KHC_KIF5 Kinesin 99.6 8.2E-16 1.8E-20 115.3 3.6 97 6-108 32-146 (325)
16 KOG0241|consensus 99.6 3.1E-15 6.6E-20 123.3 6.1 103 4-108 31-161 (1714)
17 cd01372 KISc_KIF4 Kinesin moto 99.6 8.9E-16 1.9E-20 115.7 1.5 87 20-108 39-146 (341)
18 KOG0239|consensus 99.6 3.9E-15 8.5E-20 120.6 5.3 100 6-108 344-460 (670)
19 KOG0240|consensus 99.5 3E-15 6.4E-20 117.9 3.4 86 21-108 49-152 (607)
20 cd00106 KISc Kinesin motor dom 99.5 5.9E-15 1.3E-19 110.4 3.7 101 6-108 29-146 (328)
21 PLN03188 kinesin-12 family pro 99.5 2.6E-15 5.7E-20 126.1 2.0 87 20-108 131-247 (1320)
22 cd01366 KISc_C_terminal Kinesi 99.5 1.7E-14 3.7E-19 108.3 3.6 97 6-108 33-145 (329)
23 smart00129 KISc Kinesin motor, 99.5 1.7E-14 3.7E-19 108.4 3.5 100 6-108 32-146 (335)
24 PF00225 Kinesin: Kinesin moto 99.4 4E-15 8.7E-20 111.6 -2.7 89 18-108 38-145 (335)
25 COG5059 KIP1 Kinesin-like prot 99.4 1.1E-13 2.3E-18 110.9 4.9 87 20-108 55-156 (568)
26 KOG0246|consensus 99.4 5.9E-14 1.3E-18 110.8 2.7 104 3-108 235-365 (676)
27 KOG0247|consensus 99.2 1.5E-11 3.4E-16 99.4 6.7 58 18-77 78-137 (809)
28 KOG0244|consensus 98.9 1.6E-09 3.4E-14 89.7 3.4 88 19-108 30-135 (913)
29 KOG0243|consensus 98.5 4.7E-08 1E-12 82.1 1.8 74 34-108 49-122 (1041)
30 cd01364 KISc_BimC_Eg5 Kinesin 98.5 7.2E-08 1.6E-12 73.2 2.1 67 42-108 9-75 (352)
31 KOG4280|consensus 98.4 1.2E-07 2.7E-12 75.9 1.3 68 41-108 11-79 (574)
32 cd01371 KISc_KIF3 Kinesin moto 98.3 4.1E-07 8.8E-12 68.7 3.1 67 42-108 8-75 (333)
33 cd01370 KISc_KIP3_like Kinesin 98.3 5.5E-07 1.2E-11 68.2 2.9 66 42-108 7-81 (338)
34 cd01367 KISc_KIF2_like Kinesin 98.3 5.9E-07 1.3E-11 67.6 2.8 67 41-108 7-78 (322)
35 cd01365 KISc_KIF1A_KIF1B Kines 98.3 5.7E-07 1.2E-11 68.5 2.7 66 41-108 7-82 (356)
36 cd01372 KISc_KIF4 Kinesin moto 98.2 7.1E-07 1.5E-11 67.4 2.0 60 42-108 8-67 (341)
37 cd01373 KISc_KLP2_like Kinesin 98.2 7.5E-07 1.6E-11 67.4 1.9 61 42-108 8-68 (337)
38 cd01369 KISc_KHC_KIF5 Kinesin 98.1 1.5E-06 3.3E-11 65.3 2.4 62 42-108 9-70 (325)
39 cd01368 KISc_KIF23_like Kinesi 98.1 1.6E-06 3.5E-11 65.8 2.4 67 41-108 7-82 (345)
40 cd01376 KISc_KID_like Kinesin 98.0 2E-06 4.4E-11 64.6 1.7 64 42-108 7-74 (319)
41 PF00225 Kinesin: Kinesin moto 98.0 1.2E-06 2.7E-11 65.7 0.2 67 42-108 1-68 (335)
42 cd01374 KISc_CENP_E Kinesin mo 97.9 4.1E-06 8.8E-11 62.9 1.8 60 42-108 7-67 (321)
43 smart00129 KISc Kinesin motor, 97.8 1.3E-05 2.8E-10 60.3 2.6 66 42-108 7-73 (335)
44 KOG0245|consensus 97.7 2.3E-05 5.1E-10 66.3 2.7 64 42-108 11-81 (1221)
45 cd01375 KISc_KIF9_like Kinesin 97.6 3.2E-05 7E-10 58.5 2.0 61 42-108 7-74 (334)
46 KOG0240|consensus 97.6 1.7E-05 3.6E-10 63.5 0.1 63 41-108 13-76 (607)
47 cd00106 KISc Kinesin motor dom 97.6 3.5E-05 7.5E-10 57.7 1.7 64 42-108 7-72 (328)
48 KOG0242|consensus 97.4 6.3E-05 1.4E-09 61.9 1.7 29 80-108 52-80 (675)
49 cd01363 Motor_domain Myosin an 97.3 0.00033 7.1E-09 48.8 3.9 37 38-77 8-46 (186)
50 cd01366 KISc_C_terminal Kinesi 97.3 0.00015 3.2E-09 54.6 2.0 62 42-108 9-71 (329)
51 KOG0239|consensus 97.3 8.5E-05 1.8E-09 61.1 0.7 64 41-107 320-385 (670)
52 PLN03188 kinesin-12 family pro 97.2 0.00013 2.9E-09 62.9 1.3 59 37-108 101-159 (1320)
53 KOG0244|consensus 97.1 0.00013 2.8E-09 61.2 0.1 59 43-108 1-59 (913)
54 KOG0241|consensus 96.5 0.0014 3E-08 55.9 1.9 66 42-107 11-86 (1714)
55 KOG0246|consensus 96.1 0.0029 6.3E-08 51.2 1.7 27 82-108 259-285 (676)
56 COG5059 KIP1 Kinesin-like prot 95.1 0.0084 1.8E-07 48.7 0.8 29 80-108 55-83 (568)
57 KOG0247|consensus 90.7 0.1 2.2E-06 43.6 0.9 28 80-107 80-107 (809)
58 COG3956 Protein containing tet 71.4 0.84 1.8E-05 35.5 -1.0 26 83-108 53-78 (488)
59 PF04722 Ssu72: Ssu72-like pro 48.6 25 0.00055 25.1 3.2 37 59-103 29-65 (195)
60 KOG3222|consensus 43.5 25 0.00054 24.9 2.5 48 56-104 112-167 (195)
61 COG3956 Protein containing tet 41.1 12 0.00027 29.3 0.8 29 24-52 54-82 (488)
62 PF00308 Bac_DnaA: Bacterial d 23.9 33 0.00072 24.3 0.6 47 22-72 4-51 (219)
63 PF08073 CHDNT: CHDNT (NUC034) 21.9 65 0.0014 18.3 1.4 17 34-50 14-30 (55)
No 1
>KOG4280|consensus
Probab=99.82 E-value=6.4e-21 Score=150.97 Aligned_cols=106 Identities=25% Similarity=0.393 Sum_probs=88.3
Q ss_pred CCCCCCEEEEEcCCC-CCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCCCC-
Q psy2777 1 MDSEKCTCSIVNASD-PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNASDP- 76 (108)
Q Consensus 1 vd~~~~~~~~~~~~~-~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~~~- 76 (108)
+|+..+++.|.+|.. ....+|.|+||+||++.++|++||..+++||++.+++ +|+|| |||| +|+|||+||.|..
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtv--FaYGQTGsGKTyTM~G~~~ 108 (574)
T KOG4280|consen 31 VDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTV--FAYGQTGSGKTYTMIGPDP 108 (574)
T ss_pred cccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceE--EEeccCCCCCceEeeCCCh
Confidence 578899999999875 4567899999999999999999999999999999999 59999 9999 9999999998872
Q ss_pred CCCCc-eeeeccc------------cCccccHHHHHhhhCcCcCC
Q psy2777 77 SAPPK-GFTFDGV------------YDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 77 ~~~~k-~FtFD~v------------f~~~~sq~eIY~e~~~~Lle 108 (108)
...|- ...|.++ |...+|++|||||.++|||+
T Consensus 109 ~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~ 153 (574)
T KOG4280|consen 109 ELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLS 153 (574)
T ss_pred hhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhC
Confidence 11111 2334443 44668999999999999985
No 2
>KOG0242|consensus
Probab=99.72 E-value=9e-19 Score=141.82 Aligned_cols=87 Identities=20% Similarity=0.377 Sum_probs=75.9
Q ss_pred CceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCCCCce-eeecc---------
Q psy2777 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSAPPKG-FTFDG--------- 87 (108)
Q Consensus 20 ~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~~~k~-FtFD~--------- 87 (108)
+..|.||+||++.++|++||+..++|++.+++.| |++| |||| ||+|||+||.|....+|-- +++..
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TV--FAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~ 129 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATV--FAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG 129 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccce--eeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC
Confidence 4679999999999999999999999999999995 9999 9999 9999999999987666542 44333
Q ss_pred --ccCccccHHHHHhhhCcCcCC
Q psy2777 88 --VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 88 --vf~~~~sq~eIY~e~~~~Lle 108 (108)
-|....|++|||||.++|||+
T Consensus 130 ~r~f~v~vSYlEIYNE~I~DLL~ 152 (675)
T KOG0242|consen 130 EREFSVRVSYLEIYNERIRDLLN 152 (675)
T ss_pred CceeEEEEEEEEEeccccccccC
Confidence 355778999999999999985
No 3
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.71 E-value=3.9e-18 Score=129.07 Aligned_cols=103 Identities=18% Similarity=0.320 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCC---------CCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEec
Q psy2777 4 EKCTCSIVNASD---------PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVN 72 (108)
Q Consensus 4 ~~~~~~~~~~~~---------~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~ 72 (108)
+.+++.+..|.. ....++.|.||+||+++++|++||+..++|+++..++| |+++ +||| +|+|||++|
T Consensus 29 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti--~aYGqtGSGKTyTm 106 (345)
T cd01368 29 NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLL--FTYGVTNSGKTYTM 106 (345)
T ss_pred CCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEE--EEeCCCCCCCeEEe
Confidence 456788887754 12356899999999999999999999999999999995 9988 9999 999999999
Q ss_pred CCCCCCCCc-eeeecc------ccCccccHHHHHhhhCcCcCC
Q psy2777 73 ASDPSAPPK-GFTFDG------VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 73 ~~~~~~~~k-~FtFD~------vf~~~~sq~eIY~e~~~~Lle 108 (108)
.|.....|- ...++. .|....|+.|||+|.++|||.
T Consensus 107 ~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~ 149 (345)
T cd01368 107 QGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLE 149 (345)
T ss_pred cCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCC
Confidence 987655543 112222 256889999999999999984
No 4
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.69 E-value=6.7e-18 Score=127.08 Aligned_cols=106 Identities=28% Similarity=0.428 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCCC-CCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCC
Q psy2777 1 MDSEKCTCSIVNASD-PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPS 77 (108)
Q Consensus 1 vd~~~~~~~~~~~~~-~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~ 77 (108)
+|++++++.+.+|.. ....++.|.||+||+++++|++||+..++|+++..++| |+++ ++|| +|+|||++|.|...
T Consensus 27 ~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i--~ayG~tgSGKTyTm~G~~~ 104 (333)
T cd01371 27 VDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTI--FAYGQTGTGKTFTMEGVRE 104 (333)
T ss_pred EcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeE--EecCCCCCCCcEeecCCCC
Confidence 468889999999864 23467899999999999999999999999999999995 8888 9999 99999999988654
Q ss_pred ---CCCc-eeeec-----------cccCccccHHHHHhhhCcCcCC
Q psy2777 78 ---APPK-GFTFD-----------GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 78 ---~~~k-~FtFD-----------~vf~~~~sq~eIY~e~~~~Lle 108 (108)
..|- ...++ ..|....|+.|||+|.++|||.
T Consensus 105 ~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~ 150 (333)
T cd01371 105 PPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLG 150 (333)
T ss_pred cccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCC
Confidence 2222 12222 2345778999999999999984
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.68 E-value=6.4e-18 Score=127.53 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=73.5
Q ss_pred CCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCCCCc-e----eeec-----
Q psy2777 19 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSAPPK-G----FTFD----- 86 (108)
Q Consensus 19 ~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~~~k-~----FtFD----- 86 (108)
.++.|.||+||++.++|++||+..++||++..++| |+++ +||| +|+|||++|.|....+|- . .-|+
T Consensus 52 ~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i--~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~ 129 (338)
T cd01370 52 KELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATV--FAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEER 129 (338)
T ss_pred CceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceE--EeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhc
Confidence 46899999999999999999999999999999995 9988 9999 999999999887654432 1 1122
Q ss_pred ---cccCccccHHHHHhhhCcCcCC
Q psy2777 87 ---GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 87 ---~vf~~~~sq~eIY~e~~~~Lle 108 (108)
..|....|+.|||+|.++|||.
T Consensus 130 ~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 130 KDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred ccCceEEEEEEEEEEECCEEEECCC
Confidence 2345678999999999999984
No 6
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.67 E-value=3.4e-17 Score=122.88 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=81.1
Q ss_pred CEEEEEcCCCCC-----CCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCC
Q psy2777 6 CTCSIVNASDPS-----APPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSA 78 (108)
Q Consensus 6 ~~~~~~~~~~~~-----~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~ 78 (108)
+++.+.+|+... ...+.|.||+||++.++|++||+..++|+++..++| |+++ ++|| +|+|||++|.|....
T Consensus 31 ~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i--~ayGqtGSGKTyTm~G~~~~ 108 (322)
T cd01367 31 PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATC--FAYGQTGSGKTYTMLGDENQ 108 (322)
T ss_pred CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEE--EeccCCCCCCceEecCcCCc
Confidence 578888775421 125789999999999999999999999999999995 9988 9999 999999999887654
Q ss_pred CCc-e----eeecc------ccCccccHHHHHhhhCcCcCC
Q psy2777 79 PPK-G----FTFDG------VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 79 ~~k-~----FtFD~------vf~~~~sq~eIY~e~~~~Lle 108 (108)
+|- . .-|+. -|....|+.|||+|.++|||.
T Consensus 109 ~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 149 (322)
T cd01367 109 EGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLN 149 (322)
T ss_pred CccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhcc
Confidence 433 1 11221 345778999999999999984
No 7
>KOG0243|consensus
Probab=99.67 E-value=4.9e-17 Score=134.72 Aligned_cols=102 Identities=22% Similarity=0.339 Sum_probs=79.9
Q ss_pred CCEEEEEcCCCCCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCCCCCC----
Q psy2777 5 KCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNASDPSA---- 78 (108)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~~~~~---- 78 (108)
+..|.|+.--..+.-.|.|+||.||+|.+.|++||+..+.|++..++. +|+|| |||| ||+|||+||.|+.+.
T Consensus 79 ~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTI--FAYGQTGTGKTyTMeG~~~~~~g~ 156 (1041)
T KOG0243|consen 79 RKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTI--FAYGQTGTGKTYTMEGGERKKNGE 156 (1041)
T ss_pred cceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceE--EEecCCCCCceeeeecCcccccCC
Confidence 344665554112224689999999999999999999999999999999 59999 9999 999999999985321
Q ss_pred -------CCce--eeecc------ccCccccHHHHHhhhCcCcCC
Q psy2777 79 -------PPKG--FTFDG------VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 79 -------~~k~--FtFD~------vf~~~~sq~eIY~e~~~~Lle 108 (108)
.||. --||. .|.+.+|++|+|||-++|||.
T Consensus 157 l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa 201 (1041)
T KOG0243|consen 157 LPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLA 201 (1041)
T ss_pred CCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcC
Confidence 1331 12322 577889999999999999983
No 8
>KOG0245|consensus
Probab=99.66 E-value=6.4e-17 Score=133.41 Aligned_cols=102 Identities=22% Similarity=0.344 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCCCCCCceeEcceEeCCC-------CChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCC
Q psy2777 4 EKCTCSIVNASDPSAPPKGFTFDGVYDAK-------STTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNAS 74 (108)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~f~fd~v~~~~-------~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~ 74 (108)
.+++++|.+|...++.++ |+||+.||.+ ++|.+||+++.+||+..+++ +|.++ |||| ||+||+++|.|
T Consensus 31 ~gn~ttii~~~~~k~~~~-FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~Cl--FAYGQTGSGKSYTMMG 107 (1221)
T KOG0245|consen 31 QGNTTTIINPKGSKDAPK-FTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCL--FAYGQTGSGKSYTMMG 107 (1221)
T ss_pred cCCceeeecCCCcccCCc-eecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEE--EEeccCCCCcceeeec
Confidence 467888888887666665 9999999988 57999999999999999999 59888 9999 99999999998
Q ss_pred CC--CCCC---cee--eec---------cccCccccHHHHHhhhCcCcCC
Q psy2777 75 DP--SAPP---KGF--TFD---------GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 75 ~~--~~~~---k~F--tFD---------~vf~~~~sq~eIY~e~~~~Lle 108 (108)
-+ .++| +-+ -|- --|..+.|++|||+|.++|||.
T Consensus 108 ~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~ 157 (1221)
T KOG0245|consen 108 FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLN 157 (1221)
T ss_pred cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhh
Confidence 65 3332 211 121 2367889999999999999983
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.65 E-value=6.6e-17 Score=122.66 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=81.6
Q ss_pred CEEEEEcCCC---CCCCCceeEcceEeCCC-------CChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecC
Q psy2777 6 CTCSIVNASD---PSAPPKGFTFDGVYDAK-------STTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNA 73 (108)
Q Consensus 6 ~~~~~~~~~~---~~~~~~~f~fd~v~~~~-------~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~ 73 (108)
+++.|.+|.. .....+.|.||+|||+. ++|++||+.+++|+++..++| |++| ++|| +|+|||++|.
T Consensus 30 ~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i--~ayGqtGSGKT~Tm~ 107 (356)
T cd01365 30 KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCL--FAYGQTGSGKSYTMM 107 (356)
T ss_pred CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEE--EEecCCCCCCeEEec
Confidence 6888888864 12346889999999999 999999999999999999995 8888 9999 9999999998
Q ss_pred CCCCCCCc-ee----ee---------ccccCccccHHHHHhhhCcCcCC
Q psy2777 74 SDPSAPPK-GF----TF---------DGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 74 ~~~~~~~k-~F----tF---------D~vf~~~~sq~eIY~e~~~~Lle 108 (108)
|.....|- .. -| +..|....|+.|||+|.++|||.
T Consensus 108 G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 108 GYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred CCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 87654432 11 12 12355678999999999999984
No 10
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.64 E-value=7.8e-17 Score=120.71 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=81.2
Q ss_pred CEEEEEcCCCCCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCCCCc--
Q psy2777 6 CTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSAPPK-- 81 (108)
Q Consensus 6 ~~~~~~~~~~~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~~~k-- 81 (108)
.++.+.+|.+.. .++.|.||+||++.++|++||+..+.|+++..++| |+++ ++|| +|+|||++|.|.....|-
T Consensus 33 ~~v~~~~~~~~~-~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i--~ayG~tgSGKTyTm~G~~~~~Glip 109 (319)
T cd01376 33 KSVEIENPRNRG-ETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATV--FAYGSTGAGKTHTMLGDPNEPGLIP 109 (319)
T ss_pred eEEEEeCCCCCC-CccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEE--EEECCCCCCCcEEEeCCcCccchHH
Confidence 478888887643 46889999999999999999999999999999995 8888 9999 999999999886554432
Q ss_pred -e--eeec------cccCccccHHHHHhhhCcCcCC
Q psy2777 82 -G--FTFD------GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 82 -~--FtFD------~vf~~~~sq~eIY~e~~~~Lle 108 (108)
. .-|+ ..|....|+.|||+|.++|||.
T Consensus 110 r~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 145 (319)
T cd01376 110 RTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLE 145 (319)
T ss_pred HHHHHHHHHHhhccccceEEEEEEEEECCEeeEccC
Confidence 1 1121 1345678899999999999984
No 11
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.64 E-value=2.1e-16 Score=119.29 Aligned_cols=88 Identities=26% Similarity=0.447 Sum_probs=71.6
Q ss_pred CCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCC--------CC---ce--e
Q psy2777 19 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSA--------PP---KG--F 83 (108)
Q Consensus 19 ~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~--------~~---k~--F 83 (108)
+++.|.||+||++.++|++||+..++|+++..++| |+++ +||| +|+|||++|.|.... .| +. .
T Consensus 39 ~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti--~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~ 116 (337)
T cd01373 39 PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSI--FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEY 116 (337)
T ss_pred CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeE--EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHH
Confidence 46899999999999999999999999999999995 9888 9999 999999999885431 11 11 1
Q ss_pred eec------------cccCccccHHHHHhhhCcCcCC
Q psy2777 84 TFD------------GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 84 tFD------------~vf~~~~sq~eIY~e~~~~Lle 108 (108)
-|. ..|....|+.|||+|.++|||.
T Consensus 117 Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~ 153 (337)
T cd01373 117 LFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLD 153 (337)
T ss_pred HHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCC
Confidence 121 1245677999999999999984
No 12
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.63 E-value=1.3e-16 Score=120.18 Aligned_cols=104 Identities=21% Similarity=0.370 Sum_probs=82.6
Q ss_pred CCCCCEEEEEcCCCC-------CCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEec
Q psy2777 2 DSEKCTCSIVNASDP-------SAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVN 72 (108)
Q Consensus 2 d~~~~~~~~~~~~~~-------~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~ 72 (108)
++++.++++..|+.. ....+.|.||+||++ ++|++||+..++|+++..++| |+++ ++|| +|+|||++|
T Consensus 22 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i--~ayG~tgSGKTyTm 98 (334)
T cd01375 22 GPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTI--FAYGQTGAGKTFTM 98 (334)
T ss_pred cCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccce--eeecCCCCCCeEEc
Confidence 567788888888752 334578999999999 999999999999999999995 8888 9999 999999999
Q ss_pred CCCCC---CCCc-----eeee-------ccccCccccHHHHHhhhCcCcCC
Q psy2777 73 ASDPS---APPK-----GFTF-------DGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 73 ~~~~~---~~~k-----~FtF-------D~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.|... ..|- ...| +..|....|+.|||+|.++|||.
T Consensus 99 ~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~ 149 (334)
T cd01375 99 TGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLG 149 (334)
T ss_pred cCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCC
Confidence 87542 1221 1122 22456788999999999999984
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.61 E-value=2.2e-16 Score=119.57 Aligned_cols=102 Identities=17% Similarity=0.342 Sum_probs=78.2
Q ss_pred CCEEEEEcCCCCCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCC----
Q psy2777 5 KCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSA---- 78 (108)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~---- 78 (108)
+++|.+.++.......+.|.||+||++.++|++||+..++|+++..++| |+++ ++|| +|+|||+++.|....
T Consensus 32 ~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i--~ayG~tgSGKTyTl~G~~~~~~~~ 109 (352)
T cd01364 32 SKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTI--FAYGQTGTGKTYTMEGDRTDNKGS 109 (352)
T ss_pred CcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--EECCCCCCCCcEEecCCCcccccc
Confidence 3455555543333456889999999999999999999999999999995 8887 9999 999999999875432
Q ss_pred -------CC---ce--eee------ccccCccccHHHHHhhhCcCcCC
Q psy2777 79 -------PP---KG--FTF------DGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 79 -------~~---k~--FtF------D~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.| +. .-| +..|....|+.|||+|.++|||.
T Consensus 110 ~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 157 (352)
T cd01364 110 TWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLS 157 (352)
T ss_pred cccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCC
Confidence 11 11 112 12345678999999999999984
No 14
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.60 E-value=2.5e-16 Score=117.93 Aligned_cols=89 Identities=27% Similarity=0.491 Sum_probs=73.3
Q ss_pred CCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCCCCc-eee----e-----
Q psy2777 18 APPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSAPPK-GFT----F----- 85 (108)
Q Consensus 18 ~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~~~k-~Ft----F----- 85 (108)
...+.|.||+||+++++|++||+..++|+++..++| |+++ ++|| +|+|||+++.|....+|- ... |
T Consensus 37 ~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i--~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~ 114 (321)
T cd01374 37 TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTI--FAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQD 114 (321)
T ss_pred CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeE--EeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999995 8888 9999 999999999887544432 111 1
Q ss_pred --ccccCccccHHHHHhhhCcCcCC
Q psy2777 86 --DGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 86 --D~vf~~~~sq~eIY~e~~~~Lle 108 (108)
+..|....++.|||+|.++|||.
T Consensus 115 ~~~~~~~v~~S~~Eiy~e~v~DLL~ 139 (321)
T cd01374 115 TPDREFLLRVSYLEIYNEKIKDLLS 139 (321)
T ss_pred ccCceEEEEEEEEEEEcCEeEEccC
Confidence 23345678999999999999984
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.58 E-value=8.2e-16 Score=115.27 Aligned_cols=97 Identities=25% Similarity=0.365 Sum_probs=75.8
Q ss_pred CEEEEEcCCCCCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCC---CCC
Q psy2777 6 CTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPS---APP 80 (108)
Q Consensus 6 ~~~~~~~~~~~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~---~~~ 80 (108)
.+|.|.+| ...+.|.||+||++.++|++||+..++|+++..++| |+++ ++|| +|+|||+++.|... ..|
T Consensus 32 ~~v~~~~~----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i--~ayG~tgSGKT~Tm~G~~~~~~~~G 105 (325)
T cd01369 32 DTVSIAGS----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTI--FAYGQTGSGKTYTMEGPPGDPELKG 105 (325)
T ss_pred CEEEecCC----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceE--EEeCCCCCCceEEecCCCCccccCC
Confidence 35555544 235789999999999999999999999999999995 8887 9999 99999999987655 222
Q ss_pred c---e--eeecc--------ccCccccHHHHHhhhCcCcCC
Q psy2777 81 K---G--FTFDG--------VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 81 k---~--FtFD~--------vf~~~~sq~eIY~e~~~~Lle 108 (108)
- . .-|+. .|....+..|||++.++|||.
T Consensus 106 iipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 146 (325)
T cd01369 106 IIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLD 146 (325)
T ss_pred hHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhccc
Confidence 1 1 12221 245677899999999999984
No 16
>KOG0241|consensus
Probab=99.57 E-value=3.1e-15 Score=123.27 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=81.3
Q ss_pred CCCEEEEEcC--CC---CCCCCceeEcceEeCCC-------CChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEE
Q psy2777 4 EKCTCSIVNA--SD---PSAPPKGFTFDGVYDAK-------STTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCS 69 (108)
Q Consensus 4 ~~~~~~~~~~--~~---~~~~~~~f~fd~v~~~~-------~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t 69 (108)
++.++.++.| +. ..+.||+|.||++||+. +.|+.||+++.+-+++..++ +|+|+ ++|| +|+||+
T Consensus 31 d~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCi--faYGQtGsGKs 108 (1714)
T KOG0241|consen 31 DKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACI--FAYGQTGSGKS 108 (1714)
T ss_pred ccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceee--EEecccCCCce
Confidence 3445566555 22 34678999999999986 57999999999999999999 59999 9999 999999
Q ss_pred EecCCCCCCCC---ce----e-------eeccccCccccHHHHHhhhCcCcCC
Q psy2777 70 IVNASDPSAPP---KG----F-------TFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 70 ~~~~~~~~~~~---k~----F-------tFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++|.|.+..++ +- | .-...|..+.|++|||||.++|||+
T Consensus 109 YsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLd 161 (1714)
T KOG0241|consen 109 YSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLD 161 (1714)
T ss_pred eEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhC
Confidence 99998765443 21 1 1122466788999999999999986
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.56 E-value=8.9e-16 Score=115.67 Aligned_cols=87 Identities=24% Similarity=0.377 Sum_probs=70.5
Q ss_pred CceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCC------CCc-e----eeec
Q psy2777 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSA------PPK-G----FTFD 86 (108)
Q Consensus 20 ~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~------~~k-~----FtFD 86 (108)
.+.|.||+||+++++|++||+..++|+++..++| |+++ ++|| +|+|||++|.|.... .|- . .-|.
T Consensus 39 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i--~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~ 116 (341)
T cd01372 39 DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATV--LAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFK 116 (341)
T ss_pred CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccce--eeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHH
Confidence 5789999999999999999999999999999995 8888 9999 999999999765321 111 0 1111
Q ss_pred --------cccCccccHHHHHhhhCcCcCC
Q psy2777 87 --------GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 87 --------~vf~~~~sq~eIY~e~~~~Lle 108 (108)
..|....++.|||+|.++|||.
T Consensus 117 ~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~ 146 (341)
T cd01372 117 KIDEKKDEPDFQLKVSFLELYNEEVRDLLS 146 (341)
T ss_pred HHHhccccceEEEEEEEEEeECCeeecCCC
Confidence 2355778899999999999984
No 18
>KOG0239|consensus
Probab=99.55 E-value=3.9e-15 Score=120.65 Aligned_cols=100 Identities=20% Similarity=0.395 Sum_probs=77.7
Q ss_pred CEEEEEcCCCCCC-CCceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCC-CCCCCC-
Q psy2777 6 CTCSIVNASDPSA-PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNAS-DPSAPP- 80 (108)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~-~~~~~~- 80 (108)
+.+.+..|..... .++.|.||+||++.++|++||+++ .||+.+.++ +|.+| |||| ||+|||+||.| .+..++
T Consensus 344 ~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCI--FAYGQTGSGKTyTM~G~~~~~~Gi 420 (670)
T KOG0239|consen 344 GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCI--FAYGQTGSGKTYTMSGPTPEDPGI 420 (670)
T ss_pred ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHhcCcceeE--EEecccCCCccccccCCCcccCCc
Confidence 4577777766432 234699999999999999999776 999999999 58777 9999 99999999998 333332
Q ss_pred --ce--eee--------ccccCccccHHHHHhhhCcCcCC
Q psy2777 81 --KG--FTF--------DGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 81 --k~--FtF--------D~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++ .-| ...|....+..|||||.++|||.
T Consensus 421 ipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~ 460 (670)
T KOG0239|consen 421 IPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLS 460 (670)
T ss_pred cHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcc
Confidence 21 111 22466788999999999999983
No 19
>KOG0240|consensus
Probab=99.54 E-value=3e-15 Score=117.86 Aligned_cols=86 Identities=24% Similarity=0.449 Sum_probs=72.8
Q ss_pred ceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCCCCCCC------Cc--eeeeccccC
Q psy2777 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNASDPSAP------PK--GFTFDGVYD 90 (108)
Q Consensus 21 ~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~~~~~~------~k--~FtFD~vf~ 90 (108)
+.|.||.||.++++|++||+..+.|++..++. +|+|| ++|| +++|||++|.|....+ ++ .=-||++|.
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTv--faYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys 126 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTV--FAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYS 126 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeE--EEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999 69999 9999 9999999998754322 22 133666554
Q ss_pred --------ccccHHHHHhhhCcCcCC
Q psy2777 91 --------AKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 91 --------~~~sq~eIY~e~~~~Lle 108 (108)
+..++.|||.|.++|||+
T Consensus 127 ~~~n~efhVkVsy~EIYmEKi~DLL~ 152 (607)
T KOG0240|consen 127 MEENLEFHVKVSYFEIYMEKIRDLLD 152 (607)
T ss_pred CcccceEEEEEEeehhhhhHHHHHhC
Confidence 566899999999999985
No 20
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.53 E-value=5.9e-15 Score=110.38 Aligned_cols=101 Identities=31% Similarity=0.475 Sum_probs=81.2
Q ss_pred CEEEEEcCCC-CCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCCCCce
Q psy2777 6 CTCSIVNASD-PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSAPPKG 82 (108)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~~~k~ 82 (108)
+++.+.+|.. .....+.|.||+||+++++|++||+..++|+++..+.| |+++ ++|| +|+|||+++.|.....|-.
T Consensus 29 ~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i--~~yG~tgSGKT~tl~G~~~~~Gli 106 (328)
T cd00106 29 KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTI--FAYGQTGSGKTYTMFGSPKDPGII 106 (328)
T ss_pred CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeE--EEecCCCCCCeEEecCCCCCCchH
Confidence 6788887764 23446899999999999999999999999999999995 8877 9999 9999999998876544321
Q ss_pred -----eee---------ccccCccccHHHHHhhhCcCcCC
Q psy2777 83 -----FTF---------DGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 83 -----FtF---------D~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.-| +..|....+..|||++.++|||.
T Consensus 107 ~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~ 146 (328)
T cd00106 107 PRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLS 146 (328)
T ss_pred HHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCC
Confidence 112 23355678899999999999984
No 21
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.52 E-value=2.6e-15 Score=126.13 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=70.5
Q ss_pred CceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCCCCCC----------CC---ce--
Q psy2777 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNASDPSA----------PP---KG-- 82 (108)
Q Consensus 20 ~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~~~~~----------~~---k~-- 82 (108)
.+.|.||+||++.++|++||+.+++||+...++ +|++| +||| +|+|||+||.|.... .| +.
T Consensus 131 ~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTI--FAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRale 208 (1320)
T PLN03188 131 GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSV--FAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFE 208 (1320)
T ss_pred CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCccee--ecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHH
Confidence 468999999999999999999999999999999 59998 9999 999999999885321 11 11
Q ss_pred eeecc-------------ccCccccHHHHHhhhCcCcCC
Q psy2777 83 FTFDG-------------VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 83 FtFD~-------------vf~~~~sq~eIY~e~~~~Lle 108 (108)
.-|+. -|....|+.|||||.++|||.
T Consensus 209 dLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 209 RLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred HHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 11221 244668899999999999984
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.49 E-value=1.7e-14 Score=108.28 Aligned_cols=97 Identities=23% Similarity=0.384 Sum_probs=75.3
Q ss_pred CEEEEEcCCCCCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCCCCce-
Q psy2777 6 CTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSAPPKG- 82 (108)
Q Consensus 6 ~~~~~~~~~~~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~~~k~- 82 (108)
+++.+.++ ....+.|.||+||+++++|++||+. +.|++...++| |+++ ++|| +|+|||+++.|....+|-.
T Consensus 33 ~~i~~~~~---~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i--~ayG~tgSGKT~tl~G~~~~~Gli~ 106 (329)
T cd01366 33 GTIELSKG---TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCI--FAYGQTGSGKTYTMEGPPENPGIIP 106 (329)
T ss_pred eEEEEeCC---CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEE--EEeCCCCCCCcEEecCCCCCCCcHH
Confidence 44444443 2346789999999999999999997 69999999995 8887 9999 9999999998875444321
Q ss_pred ----eee---------ccccCccccHHHHHhhhCcCcCC
Q psy2777 83 ----FTF---------DGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 83 ----FtF---------D~vf~~~~sq~eIY~e~~~~Lle 108 (108)
..| +..|....++.|||++.++|||.
T Consensus 107 r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 145 (329)
T cd01366 107 RALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLA 145 (329)
T ss_pred HHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCC
Confidence 112 23455778999999999999984
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.49 E-value=1.7e-14 Score=108.35 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=79.7
Q ss_pred CEEEEEcCCCCCCCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCCCCCce-
Q psy2777 6 CTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPSAPPKG- 82 (108)
Q Consensus 6 ~~~~~~~~~~~~~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~~~~k~- 82 (108)
.+|.+.++... ..++.|.||+||+++++|++||+..++|+++..+.| ++++ ++|| +|+|||+++.|.....+-.
T Consensus 32 ~~v~~~~~~~~-~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i--~~yG~tgSGKT~tl~G~~~~~Gli~ 108 (335)
T smart00129 32 KTLNVNSPKNR-KEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATI--FAYGQTGSGKTYTMSGTPDSPGIIP 108 (335)
T ss_pred CEEEEeCCCCC-CCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeE--EEeCCCCCCCceEecCCCCCCCHHH
Confidence 47777776554 346889999999999999999999999999999995 8766 9999 9999999998765544431
Q ss_pred ----eeec--------cccCccccHHHHHhhhCcCcCC
Q psy2777 83 ----FTFD--------GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 83 ----FtFD--------~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.-|+ ..|....|..|||++.++|||.
T Consensus 109 ~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~ 146 (335)
T smart00129 109 RALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLN 146 (335)
T ss_pred HHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcC
Confidence 1122 2345677899999999999984
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.44 E-value=4e-15 Score=111.57 Aligned_cols=89 Identities=27% Similarity=0.452 Sum_probs=73.1
Q ss_pred CCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCC--CCCCCc-e----eeec--
Q psy2777 18 APPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASD--PSAPPK-G----FTFD-- 86 (108)
Q Consensus 18 ~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~--~~~~~k-~----FtFD-- 86 (108)
...+.|.||+||++.++|++||+..++|+++..++| |+++ ++|| +|+|||+++.|. ...+|- . .-|.
T Consensus 38 ~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i--~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~ 115 (335)
T PF00225_consen 38 QKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI--FAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQI 115 (335)
T ss_dssp TEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE--EEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHH
T ss_pred CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE--EeeccccccccccccccccccccchhhhHHHHHhhhh
Confidence 446899999999999999999999999999999995 8877 9999 999999999887 443332 1 1121
Q ss_pred --------cccCccccHHHHHhhhCcCcCC
Q psy2777 87 --------GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 87 --------~vf~~~~sq~eIY~e~~~~Lle 108 (108)
..|....|+.|||++.++|||.
T Consensus 116 ~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~ 145 (335)
T PF00225_consen 116 EERKEKSGYEFSVSVSYLEIYNEKVYDLLS 145 (335)
T ss_dssp HHHTTTSTEEEEEEEEEEEEETTEEEETTS
T ss_pred ccccccccccccccccchhhhhhhhhhhcC
Confidence 2356778999999999999984
No 25
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.44 E-value=1.1e-13 Score=110.88 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=75.5
Q ss_pred CceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCCCCCCCCce-----eeec------
Q psy2777 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNASDPSAPPKG-----FTFD------ 86 (108)
Q Consensus 20 ~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~~~~~~~k~-----FtFD------ 86 (108)
...|.||.||++.++|++||+.+++|+++..+. +|+|+ +||| +|+++|++|.|....++.. --|+
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv--fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~ 132 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV--FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLS 132 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE--EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcc
Confidence 456999999999999999999999999999999 59999 9999 9999999999877555432 2233
Q ss_pred --cccCccccHHHHHhhhCcCcCC
Q psy2777 87 --GVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 87 --~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.-|....++.|||+|..+||++
T Consensus 133 ~~~~~~v~is~lEiYnEk~~DLl~ 156 (568)
T COG5059 133 MTKDFAVSISYLEIYNEKIYDLLS 156 (568)
T ss_pred cCcceeeEeehhHHHhhHHHhhcc
Confidence 5678889999999999999984
No 26
>KOG0246|consensus
Probab=99.43 E-value=5.9e-14 Score=110.82 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCCCC-----CceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCCC
Q psy2777 3 SEKCTCSIVNASDPSAP-----PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNASD 75 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-----~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~~ 75 (108)
|+++.+.++.|+-..+- -..|.||++||+.++++.||..+++||++..++ |-+|+ |||| ||+|||+||.|+
T Consensus 235 ps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATC--FAYGQTGSGKT~TMggd 312 (676)
T KOG0246|consen 235 PSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATC--FAYGQTGSGKTYTMGGD 312 (676)
T ss_pred cccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceee--eeeccCCCCceeecccc
Confidence 67778888888753222 147999999999999999999999999999999 57888 9999 999999999765
Q ss_pred CCCCCc-----e--------eeecc-------ccCccccHHHHHhhhCcCcCC
Q psy2777 76 PSAPPK-----G--------FTFDG-------VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 76 ~~~~~k-----~--------FtFD~-------vf~~~~sq~eIY~e~~~~Lle 108 (108)
=.+..+ . |.+-+ -+...+++-|||.-.++|||.
T Consensus 313 fsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~ 365 (676)
T KOG0246|consen 313 FSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLN 365 (676)
T ss_pred cCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhc
Confidence 322211 1 11111 123557889999999999984
No 27
>KOG0247|consensus
Probab=99.24 E-value=1.5e-11 Score=99.41 Aligned_cols=58 Identities=17% Similarity=0.364 Sum_probs=52.3
Q ss_pred CCCceeEcceEeCCCCChHHHHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCC
Q psy2777 18 APPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPS 77 (108)
Q Consensus 18 ~~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~ 77 (108)
...+.|+|..||+++.+|.+||+.+|.||+..++.| |..+ |.|| +|+|||+||.|...
T Consensus 78 q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~Ll--FTyGVTgSGKTYTm~G~~~ 137 (809)
T KOG0247|consen 78 QMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLL--FTYGVTGSGKTYTMTGTPD 137 (809)
T ss_pred ceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeE--EEeeccCCCceEEeecCCC
Confidence 345789999999999999999999999999999996 8677 9999 99999999988644
No 28
>KOG0244|consensus
Probab=98.86 E-value=1.6e-09 Score=89.67 Aligned_cols=88 Identities=19% Similarity=0.362 Sum_probs=70.3
Q ss_pred CCceeEcceEeCCCCChHHHHHHhchhhHHHHhh-cCcEEEEeeee-ccceEEEecCCC----C---CCCCc--eeeecc
Q psy2777 19 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFY-RDGLIDRAVYS-EKCTCSIVNASD----P---SAPPK--GFTFDG 87 (108)
Q Consensus 19 ~~~~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~-~n~~i~~~a~g-~~~~~t~~~~~~----~---~~~~k--~FtFD~ 87 (108)
..+.|+||+||+...+|.++|+.+++||++..+. +|+++ .||| +|+++|++|.+. . ...++ ...|-+
T Consensus 30 ~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatv--laygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~ 107 (913)
T KOG0244|consen 30 KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATV--LAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTR 107 (913)
T ss_pred CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhccee--eeecccCCCceeecccccccccccCCcCcchHHHHHHH
Confidence 4578999999999999999999999999999999 69999 9999 999999999754 1 11222 222322
Q ss_pred -------ccCccccHHHHHhhhCcCcCC
Q psy2777 88 -------VYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 88 -------vf~~~~sq~eIY~e~~~~Lle 108 (108)
+|-...++.|||++-+.||+.
T Consensus 108 i~~~~~~~f~i~vs~vely~e~v~dl~~ 135 (913)
T KOG0244|consen 108 IGKTESFVFRITVSFVELYNEEVLDLLK 135 (913)
T ss_pred HHhhhccceeeeeeeeeccchhhhhhcC
Confidence 345666899999999998863
No 29
>KOG0243|consensus
Probab=98.49 E-value=4.7e-08 Score=82.14 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=58.9
Q ss_pred ChHHHHHHhchhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 34 TTEQIYNEIAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 34 ~~~~v~~~~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
..-+|+ -+|||++.+|..-+..++|.+++.+.++.+...-......|+|+||+||++.+.|++||+..+-|+|+
T Consensus 49 ~NIqVi-vRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~ 122 (1041)
T KOG0243|consen 49 VNIQVI-VRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIK 122 (1041)
T ss_pred CceEEE-EEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHH
Confidence 345677 78999999999977777788988777776655412222478999999999999999999999998863
No 30
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=98.47 E-value=7.2e-08 Score=73.18 Aligned_cols=67 Identities=13% Similarity=0.259 Sum_probs=52.0
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+...|...++..++.+.+.+.++.+..........+.|+||+||+.+++|++||++++.|||+
T Consensus 9 RvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~ 75 (352)
T cd01364 9 RCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILD 75 (352)
T ss_pred EcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHH
Confidence 6899999887766666567766666666665433333467899999999999999999999999874
No 31
>KOG4280|consensus
Probab=98.37 E-value=1.2e-07 Score=75.95 Aligned_cols=68 Identities=29% Similarity=0.357 Sum_probs=50.7
Q ss_pred HhchhhHHHHhhcCcEEEEeeeeccceEEEecCCC-CCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 41 EIAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASD-PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 41 ~~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~-~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.++|||...+...+....+.++.....+.+..+.. ..+.+++||||+||+.+++|++||+++++|||+
T Consensus 11 vr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~ 79 (574)
T KOG4280|consen 11 VRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVE 79 (574)
T ss_pred EeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHH
Confidence 35788888776633333336677666667666543 445578999999999999999999999999985
No 32
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=98.32 E-value=4.1e-07 Score=68.69 Aligned_cols=67 Identities=34% Similarity=0.497 Sum_probs=49.5
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCC-CCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASD-PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~-~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+...+...+...++..+.....+++..+.. ....++.|.||+||+.+++|++||++++.|||+
T Consensus 8 RvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~ 75 (333)
T cd01371 8 RCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVD 75 (333)
T ss_pred EcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHH
Confidence 6899999888733222235666666666665532 223478999999999999999999999999873
No 33
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=98.27 E-value=5.5e-07 Score=68.18 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=44.9
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCC---------CCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASD---------PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~---------~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
+|||+.+.|.+.+...++.+.+. ..+.+..... .....+.|+||+||++.++|++||+++++|||+
T Consensus 7 RvRP~~~~E~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~ 81 (338)
T cd01370 7 RVRPFNEKEKQEGTRRVVKVVDD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLVD 81 (338)
T ss_pred EcCCCChhhhhcCCceEEEEcCC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHHH
Confidence 68999999977433333355433 2223322211 122357899999999999999999999999873
No 34
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=98.26 E-value=5.9e-07 Score=67.59 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=45.9
Q ss_pred HhchhhHHHHhhcCcEEEEeeeeccceEEEecCCCC-----CCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 41 EIAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDP-----SAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 41 ~~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~-----~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.+|||+++.|...+....+.+.+. .++++..+... ....+.|+||+||+..++|++||+++++|||+
T Consensus 7 vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~ 78 (322)
T cd01367 7 VRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIP 78 (322)
T ss_pred EEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHH
Confidence 368999999987332222345443 34555433211 11257899999999999999999999999874
No 35
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=98.26 E-value=5.7e-07 Score=68.45 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=47.8
Q ss_pred HhchhhHHHHhhcCcEEEEeeeeccceEEEecCCCC---CCCCceeeeccccCcc-------ccHHHHHhhhCcCcCC
Q psy2777 41 EIAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDP---SAPPKGFTFDGVYDAK-------STTEQIYNEIAYPLIE 108 (108)
Q Consensus 41 ~~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~---~~~~k~FtFD~vf~~~-------~sq~eIY~e~~~~Lle 108 (108)
.++||+...|...+...++.+.+ ..+++..+... ....+.|+||+||++. ++|++||++++.|||+
T Consensus 7 vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~ 82 (356)
T cd01365 7 VRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLD 82 (356)
T ss_pred EEeCcCChhhhccCCceEEEECC--CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 36899999998844433334444 56666665421 2236789999999988 9999999999998863
No 36
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=98.19 E-value=7.1e-07 Score=67.38 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=45.3
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+.+.|...+...++.+.+....+++.. .+.|+||+||+.+++|++||++++.|||+
T Consensus 8 RvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-------~~~f~FD~vf~~~~~q~~vy~~~~~plv~ 67 (341)
T cd01372 8 RVRPLLPKELLEGCQVCVSVVPGEPQVTVGT-------DKSFTFDYVFDPSTSQEEVYNTCVAPLVD 67 (341)
T ss_pred ECCCCCchhcccCCCeEEEEeCCCCEEEecC-------CcEEeccccCCCCCCHHHHHHHHHHHHHH
Confidence 6899999887754444445555444444322 57899999999999999999999999873
No 37
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=98.18 E-value=7.5e-07 Score=67.43 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=42.6
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+...|...+...++..........+. .+++.|.||+||+++++|++||++++.|||+
T Consensus 8 RvRP~~~~e~~~~~~~~v~~~~~~~~~~~~------~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~ 68 (337)
T cd01373 8 RIRPPNEIEADGGQGQCLKKLSSDTLVWHS------HPPRMFTFDHVADSNTNQEDVFQSVGKPLVE 68 (337)
T ss_pred EcCcCChhhcccCCCeEEEEcCCCcEEeeC------CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHH
Confidence 689999988764333333443322222211 1257899999999999999999999999863
No 38
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=98.12 E-value=1.5e-06 Score=65.28 Aligned_cols=62 Identities=31% Similarity=0.388 Sum_probs=44.1
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+.+.|...+...+|...+. ..+++..+ ...+.|.||+||+++++|++||++++.|||+
T Consensus 9 RvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~ 70 (325)
T cd01369 9 RFRPLNEKEELRGSKSIVKFPGE-DTVSIAGS----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVD 70 (325)
T ss_pred EcCcCChhhhccCCceEEEEcCC-CEEEecCC----CCceEEEcCeEECCCCCHHHHHHHHHHHHHH
Confidence 68999998866333332344333 34444432 2357899999999999999999999988874
No 39
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=98.10 E-value=1.6e-06 Score=65.82 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=45.5
Q ss_pred HhchhhHHHHhhcCcEEEEeeeeccceEEEecCCC---------CCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 41 EIAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASD---------PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 41 ~~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~---------~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.++||+...|.+.+...++.+-+ ...+.+..+.. .....+.|.||+||+++++|++||++++.|||+
T Consensus 7 vRvRP~~~~E~~~~~~~~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~ 82 (345)
T cd01368 7 LRVRPLSKDELESEDEGCIEVIN-STTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLVQ 82 (345)
T ss_pred EEeCcCCchhhccCCCceEEEcC-CCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHHH
Confidence 36899999988733322224332 33455444422 112356899999999999999999999998863
No 40
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=98.04 E-value=2e-06 Score=64.57 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=44.1
Q ss_pred hchhhHHHHhhcCcEEEEee-ee-cc--ceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAV-YS-EK--CTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a-~g-~~--~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+.+.|.....++ .+ ++ .+ ..+.+..+.. ...++.|.||+||+.+++|++||++++.|||+
T Consensus 7 RvRP~~~~e~~~~~~v--~~~~~~~~~~~~v~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~ 74 (319)
T cd01376 7 RVRPFLDCEEDSSSCV--RGIDSDQGQAKSVEIENPRN-RGETKKYQFDAFYGTECTQEDIFSREVKPIVP 74 (319)
T ss_pred EeCcCCccccCCCceE--EEeCCCCCcceEEEEeCCCC-CCCccEEecCeEECCCCCHHHHHHHHHHHHHH
Confidence 6899988885433333 33 22 21 2344444432 22367899999999999999999999988863
No 41
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=98.01 E-value=1.2e-06 Score=65.73 Aligned_cols=67 Identities=25% Similarity=0.378 Sum_probs=41.8
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCC-CCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNAS-DPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~-~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+++.|.+.+....+............... ......+.|.||+||+.+++|++||++++.|||+
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~ 68 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVD 68 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHH
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHH
Confidence 589999999885443322332211111111111 1112256899999999999999999999998863
No 42
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=97.94 E-value=4.1e-06 Score=62.90 Aligned_cols=60 Identities=27% Similarity=0.439 Sum_probs=42.6
Q ss_pred hchhhHHHHhhc-CcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYR-DGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~-n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+.+.|..+ ...+ .+... ..+++..+ ...+.|.||+||+.+++|++||++++.|||+
T Consensus 7 RvRP~~~~e~~~~~~~~--~~~~~-~~v~~~~~----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~ 67 (321)
T cd01374 7 RVRPLNPRESDNEQVAW--SIDND-NTISLEES----TPGQSFTFDRVFGGESTNREVYERIAKPVVR 67 (321)
T ss_pred EcCcCCcccccCCcceE--EECCC-CEEEEcCC----CCCeEEecCeEECCCCCHHHHHHHHHHHHHH
Confidence 689999888753 2222 33332 33443332 3468999999999999999999999999874
No 43
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=97.81 E-value=1.3e-05 Score=60.30 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=45.8
Q ss_pred hchhhHHHHhhcCcEEEEeeee-ccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYS-EKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g-~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+...+...+...++.+.+ .+..+++..+... ...+.|+||+||+.+++|.+||++++.|||+
T Consensus 7 RvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~ 73 (335)
T smart00129 7 RVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNR-KEEKKFTFDKVFGATASQEDVFEETAAPLVD 73 (335)
T ss_pred EcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCC-CCCeEEecCEEECCCCChHHHHHHHHHHHHH
Confidence 5799988887632222224443 4445555443222 2357899999999999999999999998863
No 44
>KOG0245|consensus
Probab=97.70 E-value=2.3e-05 Score=66.26 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=47.2
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccC-------ccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYD-------AKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~-------~~~sq~eIY~e~~~~Lle 108 (108)
++||++++|...++..+|++.|...+ +..+......+ .|+||+.|. ..++|.+||++++++||+
T Consensus 11 RVRPfn~rE~s~~~k~Vvqm~gn~tt--ii~~~~~k~~~-~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 11 RVRPFNAREKSRDAKCVVQMQGNTTT--IINPKGSKDAP-KFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred EeccchhhhhhcccceEEEecCCcee--eecCCCcccCC-ceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 58999999998777676677664443 43444333333 499999986 347999999999999874
No 45
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=97.60 E-value=3.2e-05 Score=58.46 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=41.1
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCCC-------CCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDP-------SAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~-------~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+...+ +..+ .....+..+++..|... ....+.|+||+||+. ++|++||++++.|||+
T Consensus 7 RvRP~~~~~---~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 7 RVRPTPTKQ---GSSI--KLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred ECCCCCCCC---CccE--EEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 578886633 2222 34445566666555432 122457999999999 9999999999998863
No 46
>KOG0240|consensus
Probab=97.57 E-value=1.7e-05 Score=63.54 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=41.9
Q ss_pred HhchhhHHHHhh-cCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 41 EIAYPLIETSFY-RDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 41 ~~~RPl~~~e~~-~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
+++||++..|.. +.--+ -.+..+ ..++...++. ..++|.||.||.++++|++||+.+|.|+|+
T Consensus 13 cR~rP~n~~E~~~~~~~i--~~~~~~-~~~v~~~~~~--~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~ 76 (607)
T KOG0240|consen 13 CRFRPLNGLENNLGSKFI--DCFENG-ENTVVLETTK--ETKTYVFDRVFSPNATQEDVYEFAAKPIVD 76 (607)
T ss_pred EEeecCCchhhhcCCcCc--cCCCCC-cceEEEeccc--ccccceeeeecCCCccHHHHHHHHHHHHHH
Confidence 467999998877 43222 111111 2333232221 238999999999999999999999998874
No 47
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=97.56 E-value=3.5e-05 Score=57.74 Aligned_cols=64 Identities=36% Similarity=0.514 Sum_probs=43.0
Q ss_pred hchhhHHHHhhc-CcEEEEeeeeccceEEEecCCC-CCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYR-DGLIDRAVYSEKCTCSIVNASD-PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~-n~~i~~~a~g~~~~~t~~~~~~-~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+...+... ..++ .+.+. ..+++..+.. .....+.|.||+||+.+++|++||++++.|||+
T Consensus 7 RvrP~~~~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~ 72 (328)
T cd00106 7 RIRPLNGRESKSEESCI--TVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVE 72 (328)
T ss_pred EcCCCCcccccCCCcEE--EECCC-CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHH
Confidence 578887766332 3333 44333 4455544332 122357899999999999999999999988874
No 48
>KOG0242|consensus
Probab=97.42 E-value=6.3e-05 Score=61.89 Aligned_cols=29 Identities=34% Similarity=0.737 Sum_probs=26.7
Q ss_pred CceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 80 PKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 80 ~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
...|.||+||+.+++|.+||+..++|||+
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~ 80 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLL 80 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHH
Confidence 47899999999999999999999999873
No 49
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=97.30 E-value=0.00033 Score=48.75 Aligned_cols=37 Identities=11% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHhchhhHHHHhhc-CcEEEEeeee-ccceEEEecCCCCC
Q psy2777 38 IYNEIAYPLIETSFYR-DGLIDRAVYS-EKCTCSIVNASDPS 77 (108)
Q Consensus 38 v~~~~~RPl~~~e~~~-n~~i~~~a~g-~~~~~t~~~~~~~~ 77 (108)
||+.++ |++...++| |++| ++|| +|+|||++|.|...
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i--~~yG~tGsGKT~Tm~G~~~ 46 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCI--FAYGQTGSGKTYTMEGKRE 46 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeE--EEECCCCCcceEecCCCCC
Confidence 999999 999999994 8888 9999 99999999987543
No 50
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=97.27 E-value=0.00015 Score=54.59 Aligned_cols=62 Identities=21% Similarity=0.438 Sum_probs=40.0
Q ss_pred hchhhHHHHhhcCcEEEEeeee-ccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYS-EKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g-~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
++||+...+......+ +...+ .+..+.+... ....+.|.||+||+.+++|++||+++ .|+|+
T Consensus 9 RirP~~~~e~~~~~~~-~~~~~~~~~~i~~~~~---~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~ 71 (329)
T cd01366 9 RVRPLLPSESTEYSSV-ISFPDEDGGTIELSKG---TGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQ 71 (329)
T ss_pred EcCcCCccccCCCccE-EEEcCCCceEEEEeCC---CCCceEEecCEEECCCCCHHHHHHHH-HHHHH
Confidence 5788877765322222 23333 2244444332 12367899999999999999999985 78763
No 51
>KOG0239|consensus
Probab=97.27 E-value=8.5e-05 Score=61.10 Aligned_cols=64 Identities=19% Similarity=0.395 Sum_probs=44.1
Q ss_pred HhchhhHHHHhhc-CcEEEEeeeeccceEEEecCCCCCCC-CceeeeccccCccccHHHHHhhhCcCcC
Q psy2777 41 EIAYPLIETSFYR-DGLIDRAVYSEKCTCSIVNASDPSAP-PKGFTFDGVYDAKSTTEQIYNEIAYPLI 107 (108)
Q Consensus 41 ~~~RPl~~~e~~~-n~~i~~~a~g~~~~~t~~~~~~~~~~-~k~FtFD~vf~~~~sq~eIY~e~~~~Ll 107 (108)
+++||+...+... .+.+ ..++....+.+..+...... ++.|.||+||++.++|.+||+++ .|||
T Consensus 320 CRvRP~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv 385 (670)
T KOG0239|consen 320 CRVRPLLPSEKQRLQSKV--IDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLV 385 (670)
T ss_pred EEecCCCccccccccccc--cccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHH
Confidence 6788988888773 4444 33443344566665443322 34699999999999999999996 5665
No 52
>PLN03188 kinesin-12 family protein; Provisional
Probab=97.21 E-value=0.00013 Score=62.90 Aligned_cols=59 Identities=27% Similarity=0.442 Sum_probs=40.4
Q ss_pred HHHHHhchhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 37 QIYNEIAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 37 ~v~~~~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.|| .++||++..+ .+..+++.+ .+..+++ .++.|+||+||++.++|.+||+.++.|||+
T Consensus 101 kV~-VRVRPl~~~E--~g~~iV~~~--s~dsl~I--------~~qtFtFD~VFdp~aTQedVFe~vv~PLV~ 159 (1320)
T PLN03188 101 KVI-VRMKPLNKGE--EGEMIVQKM--SNDSLTI--------NGQTFTFDSIADPESTQEDIFQLVGAPLVE 159 (1320)
T ss_pred EEE-EEcCCCCCcc--CCCeeEEEc--CCCeEEE--------eCcEEeCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 455 5788988774 223332222 2222222 147899999999999999999999999874
No 53
>KOG0244|consensus
Probab=97.09 E-value=0.00013 Score=61.19 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=44.0
Q ss_pred chhhHHHHhhcCcEEEEeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 43 AYPLIETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 43 ~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
+|||...|....+..|+.+.+...++++. ..++|+||+||+...+|.++|+.+++||++
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig-------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~ 59 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG-------KDASFTYDKVFLDLESQKEVYESCVRPLRE 59 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec-------CCcceeeeeeccCchHHHHHHHHHHHHHHH
Confidence 69999999884444434554444444432 246899999999999999999999999864
No 54
>KOG0241|consensus
Probab=96.51 E-value=0.0014 Score=55.92 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=46.8
Q ss_pred hchhhHHHHhhcCcEEEEeeeeccceEEEecCCC---CCCCCceeeeccccCc-------cccHHHHHhhhCcCcC
Q psy2777 42 IAYPLIETSFYRDGLIDRAVYSEKCTCSIVNASD---PSAPPKGFTFDGVYDA-------KSTTEQIYNEIAYPLI 107 (108)
Q Consensus 42 ~~RPl~~~e~~~n~~i~~~a~g~~~~~t~~~~~~---~~~~~k~FtFD~vf~~-------~~sq~eIY~e~~~~Ll 107 (108)
++||++.+|++-+...+|.+++..+..++..+.. ....+|+|+||+.|.+ -++|+.||..++.-||
T Consensus 11 RVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il 86 (1714)
T KOG0241|consen 11 RVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGIL 86 (1714)
T ss_pred EecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHH
Confidence 5899999999954444457777666666554432 1234789999999963 2689999998876655
No 55
>KOG0246|consensus
Probab=96.11 E-value=0.0029 Score=51.22 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=25.6
Q ss_pred eeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 82 GFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 82 ~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
.|.||++|+..++.+.||..+++|||+
T Consensus 259 ~F~FDyaFDe~~sNe~VYrfTa~PlV~ 285 (676)
T KOG0246|consen 259 KFRFDYAFDESASNELVYRFTAKPLVK 285 (676)
T ss_pred eEEEeeecccccchHHHHHHhhhHHHH
Confidence 699999999999999999999999974
No 56
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=95.06 E-value=0.0084 Score=48.67 Aligned_cols=29 Identities=34% Similarity=0.700 Sum_probs=26.1
Q ss_pred CceeeeccccCccccHHHHHhhhCcCcCC
Q psy2777 80 PKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 80 ~k~FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
..+|+||+||++.++|++||++.+.||++
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~ 83 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLID 83 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHH
Confidence 34699999999999999999999998864
No 57
>KOG0247|consensus
Probab=90.74 E-value=0.1 Score=43.59 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=26.0
Q ss_pred CceeeeccccCccccHHHHHhhhCcCcC
Q psy2777 80 PKGFTFDGVYDAKSTTEQIYNEIAYPLI 107 (108)
Q Consensus 80 ~k~FtFD~vf~~~~sq~eIY~e~~~~Ll 107 (108)
.+.|+|-+||++.++|.+||+.++.|||
T Consensus 80 e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 80 EKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred eeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 4579999999999999999999999986
No 58
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=71.45 E-value=0.84 Score=35.51 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=23.2
Q ss_pred eeeccccCccccHHHHHhhhCcCcCC
Q psy2777 83 FTFDGVYDAKSTTEQIYNEIAYPLIE 108 (108)
Q Consensus 83 FtFD~vf~~~~sq~eIY~e~~~~Lle 108 (108)
-+||.+|....++++||+.++.+||+
T Consensus 53 ~~fD~iYE~heqFe~VYd~I~~~Lve 78 (488)
T COG3956 53 SFFDDIYETHEQFEAVYDFIAADLVE 78 (488)
T ss_pred eehhHHHhhhhhHHHHHHHHHHHHHH
Confidence 35899999999999999999998874
No 59
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=48.62 E-value=25 Score=25.06 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=21.8
Q ss_pred EeeeeccceEEEecCCCCCCCCceeeeccccCccccHHHHHhhhC
Q psy2777 59 RAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIA 103 (108)
Q Consensus 59 ~~a~g~~~~~t~~~~~~~~~~~k~FtFD~vf~~~~sq~eIY~e~~ 103 (108)
|..||+|+.+-+-.+ ....|..|.| ..++.+||++..
T Consensus 29 V~SfGTGs~VkLPGp--s~d~PnvY~F------gT~Y~~iy~dL~ 65 (195)
T PF04722_consen 29 VRSFGTGSHVKLPGP--SIDKPNVYDF------GTPYDDIYNDLL 65 (195)
T ss_dssp EEEEE-SSSEEEEES--STTCEEEE-T------TS-HHHHHHHHH
T ss_pred eEeecCCCcccCCCC--CCCCCcccCC------CCcHHHHHHHHH
Confidence 388999988776444 2223454554 377889998753
No 60
>KOG3222|consensus
Probab=43.46 E-value=25 Score=24.91 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=30.3
Q ss_pred EEEEeeeeccce--EEEecCCCCCCC------CceeeeccccCccccHHHHHhhhCc
Q psy2777 56 LIDRAVYSEKCT--CSIVNASDPSAP------PKGFTFDGVYDAKSTTEQIYNEIAY 104 (108)
Q Consensus 56 ~i~~~a~g~~~~--~t~~~~~~~~~~------~k~FtFD~vf~~~~sq~eIY~e~~~ 104 (108)
..|++++..+.+ .++++.|.-.+. ++.|-||.+|.+ ...++-|.|+-+
T Consensus 112 A~c~f~~~~g~g~~p~~~F~G~~~G~IVp~rG~~~fGwd~iFqP-~g~~~tyaEMpk 167 (195)
T KOG3222|consen 112 ALCTFGYADGRGAKPVHTFAGETEGSIVPPRGPTDFGWDPIFQP-DGYEQTYAEMPK 167 (195)
T ss_pred EEEEEEEEcCCCCceeEEEecccCceEcCCCCCCCCCCCcccCC-CccccchhhCCh
Confidence 455577664444 566676643221 457999999977 666666766543
No 61
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=41.08 E-value=12 Score=29.26 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=26.0
Q ss_pred EcceEeCCCCChHHHHHHhchhhHHHHhh
Q psy2777 24 TFDGVYDAKSTTEQIYNEIAYPLIETSFY 52 (108)
Q Consensus 24 ~fd~v~~~~~~~~~v~~~~~RPl~~~e~~ 52 (108)
.||.+|..+.+-++||+.+++-|++.+.+
T Consensus 54 ~fD~iYE~heqFe~VYd~I~~~LveaAke 82 (488)
T COG3956 54 FFDDIYETHEQFEAVYDFIAADLVEAAKE 82 (488)
T ss_pred ehhHHHhhhhhHHHHHHHHHHHHHHhhcc
Confidence 46999999999999999999999987755
No 62
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=23.94 E-value=33 Score=24.26 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=25.7
Q ss_pred eeEcceEeCCCCChHHHHHHhchhhHHHHhhcCcEEEEeeee-ccceEEEec
Q psy2777 22 GFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDRAVYS-EKCTCSIVN 72 (108)
Q Consensus 22 ~f~fd~v~~~~~~~~~v~~~~~RPl~~~e~~~n~~i~~~a~g-~~~~~t~~~ 72 (108)
.|+||.-.- ..+++..+... +-+.+..-.....+ +.|| .|.||||..
T Consensus 4 ~~tFdnfv~-g~~N~~a~~~~-~~ia~~~~~~~~~l--~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 4 KYTFDNFVV-GESNELAYAAA-KAIAENPGERYNPL--FLYGPSGLGKTHLL 51 (219)
T ss_dssp T-SCCCS---TTTTHHHHHHH-HHHHHSTTTSSSEE--EEEESTTSSHHHHH
T ss_pred CCccccCCc-CCcHHHHHHHH-HHHHhcCCCCCCce--EEECCCCCCHHHHH
Confidence 488886553 34566676433 43433321112235 8888 999999843
No 63
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.91 E-value=65 Score=18.26 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=13.5
Q ss_pred ChHHHHHHhchhhHHHH
Q psy2777 34 TTEQIYNEIAYPLIETS 50 (108)
Q Consensus 34 ~~~~v~~~~~RPl~~~e 50 (108)
+....|...+||++..+
T Consensus 14 t~yK~Fsq~vRP~l~~~ 30 (55)
T PF08073_consen 14 TNYKAFSQHVRPLLAKA 30 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678899999998765
Done!