RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2777
(108 letters)
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil,
microtubule, motor protein; HET: ADP; 1.80A {Homo
sapiens} PDB: 3b6v_A*
Length = 372
Score = 57.6 bits (140), Expect = 2e-11
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 1 MDSEKCTCSIVNASDPSA-PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+D + S+ N + PK FTFD VYD + ++Y+E PL+++
Sbjct: 47 VDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVL 98
Score = 53.7 bits (130), Expect = 5e-10
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 61 VYSEKCTCSIVNASDPSA-PPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
V + S+ N + PK FTFD VYD + ++Y+E PL++
Sbjct: 47 VDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVD 95
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 53.3 bits (129), Expect = 8e-10
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 1 MDSEKCTCSIVNASDPSA-PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
D + S+ K +TFD V+ A + +Y + P+++
Sbjct: 34 CDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVI 85
Score = 50.3 bits (121), Expect = 8e-09
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 61 VYSEKCTCSIVNASDPSA-PPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ S+ K +TFD V+ A + +Y + P+++
Sbjct: 34 CDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILD 82
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 52.2 bits (126), Expect = 2e-09
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 61 VYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
V + + S K FTFD + +S +Y+ + PLIE
Sbjct: 47 VDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIE 94
Score = 52.2 bits (126), Expect = 2e-09
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 7 TCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
+ + S K FTFD + +S +Y+ + PLIE
Sbjct: 53 REVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIE 94
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 51.0 bits (123), Expect = 5e-09
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 1 MDSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
++ V+ K F FD V+ TT+ +Y EIA P+I+++
Sbjct: 30 WKTDNNVIYQVD------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAI 74
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 76 PSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
K F FD V+ TT+ +Y EIA P+I+
Sbjct: 39 QVDGSKSFNFDRVFHGNETTKNVYEEIAAPIID 71
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 50.7 bits (122), Expect = 6e-09
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 4 EKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
+ C+ I N + + FD Y +ST + IY P++
Sbjct: 49 DSCSLEIANWRNHQ-ETLKYQFDAFYGERSTQQDIYAGSVQPILR 92
Score = 50.7 bits (122), Expect = 6e-09
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 64 EKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ C+ I N + + FD Y +ST + IY P++
Sbjct: 49 DSCSLEIANWRNHQ-ETLKYQFDAFYGERSTQQDIYAGSVQPILR 92
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 50.3 bits (121), Expect = 8e-09
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 1 MDSEKCTCSIVNASDPSAP------PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
MD + + P+ FTFD VYD S I+ PLI+
Sbjct: 30 MDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVL 86
Score = 47.6 bits (114), Expect = 8e-08
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 72 NASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+A+ P+ FTFD VYD S I+ PLI+
Sbjct: 47 SATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLID 83
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP;
2.3A {Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 49.9 bits (120), Expect = 1e-08
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 15 DPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
D FTFD V+D I++ P ++
Sbjct: 41 DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77
Score = 49.5 bits (119), Expect = 1e-08
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 75 DPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
D FTFD V+D I++ P ++
Sbjct: 41 DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVD 74
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 49.9 bits (120), Expect = 1e-08
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 1 MDSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
++ ++ + F F V + E +Y PL+E F
Sbjct: 37 VEPGLGRVTLGR-------DRHFGFHVVLAEDAGQEAVYQACVQPLLEAFF 80
Score = 49.1 bits (118), Expect = 2e-08
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 79 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ F F V + E +Y PL+E
Sbjct: 48 RDRHFGFHVVLAEDAGQEAVYQACVQPLLE 77
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 49.5 bits (119), Expect = 1e-08
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 1 MDSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+ I K + FD V+ ++ E++YNE A ++
Sbjct: 37 FPNNVEENCISI------AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVL 81
Score = 49.5 bits (119), Expect = 2e-08
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 77 SAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
S K + FD V+ ++ E++YNE A ++
Sbjct: 47 SIAGKVYLFDKVFKPNASQEKVYNEAAKSIVT 78
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 49.5 bits (119), Expect = 1e-08
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 4 EKCTCSIVNASDP---SAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
E SD F FD + A + +++Y + PL++
Sbjct: 41 EPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLL 91
Score = 49.1 bits (118), Expect = 2e-08
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 64 EKCTCSIVNASDP---SAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
E SD F FD + A + +++Y + PL++
Sbjct: 41 EPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVD 88
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 49.2 bits (118), Expect = 2e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 19 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+ F FD +D ++ E +Y A PL++T F
Sbjct: 119 ENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 151
Score = 47.2 bits (113), Expect = 1e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 79 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ F FD +D ++ E +Y A PL++
Sbjct: 119 ENQAFCFDFAFDETASNEVVYRFTARPLVQ 148
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K*
1mkj_A* 2kin_A* 3kin_A*
Length = 325
Score = 48.3 bits (116), Expect = 4e-08
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 5 KCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
K K + FD V+ + ++ EQ+YN+ A +++
Sbjct: 28 KYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 74
Score = 48.0 bits (115), Expect = 5e-08
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 65 KCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
K K + FD V+ + ++ EQ+YN+ A +++
Sbjct: 28 KYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVK 71
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 48.4 bits (116), Expect = 5e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 19 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+ F FD +D ++ E +Y A PL++T F
Sbjct: 99 ENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 131
Score = 46.5 bits (111), Expect = 2e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 79 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ F FD +D ++ E +Y A PL++
Sbjct: 99 ENQAFCFDFAFDETASNEVVYRFTARPLVQ 128
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 47.6 bits (114), Expect = 7e-08
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 12 NASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
N F FD V+D ST +++ P++ +
Sbjct: 63 NVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFL 102
Score = 46.9 bits (112), Expect = 1e-07
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 72 NASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
N F FD V+D ST +++ P++
Sbjct: 63 NVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILR 99
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 47.6 bits (114), Expect = 7e-08
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 2 DSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDG 55
+++ +N ++ F FD +++ T ++I+ EI L+++S DG
Sbjct: 34 EAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIR-QLVQSSL--DG 84
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 48 ETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLI 107
E LI++ ++ +N ++ F FD +++ T ++I+ EI L+
Sbjct: 20 EPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIR-QLV 78
Query: 108 E 108
+
Sbjct: 79 Q 79
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor
protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus
musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A*
1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A*
2hxf_C* 1ia0_K* 2hxh_C*
Length = 366
Score = 47.2 bits (113), Expect = 1e-07
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 1 MDSEKCTCSIVNASDPSAPPKGFTFDGVYDAKS--------TTEQIYNEIAYPLIETSF 51
M T IVN P PK F+FD Y + + + +Q+Y +I +++ +F
Sbjct: 30 MSGSTTT--IVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 67 TCSIVNASDPSAPPKGFTFDGVYDAKS--------TTEQIYNEIAYPLIE 108
T +IVN P PK F+FD Y + + + +Q+Y +I +++
Sbjct: 34 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 83
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free,
transport protein; 1.60A {Plasmodium falciparum} SCOP:
c.37.1.9
Length = 360
Score = 47.2 bits (113), Expect = 1e-07
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
F D V+D +Y PLI +
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80
Score = 44.9 bits (107), Expect = 7e-07
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 80 PKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
F D V+D +Y PLI
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLII 77
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 46.1 bits (110), Expect = 3e-07
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 2 DSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
D+ V +A F FD ++D + T ++ E+ L++
Sbjct: 89 DNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQ 134
Score = 44.6 bits (106), Expect = 1e-06
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 63 SEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ V +A F FD ++D + T ++ E+ L++
Sbjct: 90 NSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQ 134
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 45.7 bits (109), Expect = 4e-07
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 48 ETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLI 107
R G R++ + F DGV ++ + +Y +A ++
Sbjct: 38 AHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHD-ASQDLVYETVAKDVV 96
Query: 108 E 108
Sbjct: 97 S 97
Score = 44.6 bits (106), Expect = 9e-07
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 9 SIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+ F DGV ++ + +Y +A ++ +
Sbjct: 59 IRRGVVNNQQTDWSFKLDGVLHD-ASQDLVYETVAKDVVSQAL 100
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor
protein, microtubinding proteinbule, contractIle
protein; HET: ADP; 1.30A {Saccharomyces cerevisiae}
SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 45.7 bits (109), Expect = 4e-07
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 2 DSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
D+ V +A F FD ++D + T ++ E+ L++
Sbjct: 33 DNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQ 78
Score = 44.1 bits (105), Expect = 1e-06
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 63 SEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ V +A F FD ++D + T ++ E+ L++
Sbjct: 34 NSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQ 78
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 45.3 bits (108), Expect = 4e-07
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1 MDSEKCTCSIVNASDPS-APPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
D ++A S + F+FD V+ S+ I+ ++ PLI+
Sbjct: 85 HDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQ 132
Score = 43.0 bits (102), Expect = 3e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 45 PLIETSFYRDGLIDRAVYSEKCTCSIVNASDPS-APPKGFTFDGVYDAKSTTEQIYNEIA 103
P +E+ R ++A S + F+FD V+ S+ I+ ++
Sbjct: 69 PPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS 128
Query: 104 YPLIE 108
PLI+
Sbjct: 129 -PLIQ 132
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 45.0 bits (107), Expect = 6e-07
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 60 AVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
++ ++ + P F+FD V+ S ++++ EIA L++
Sbjct: 62 SLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEEIA-MLVQ 109
Score = 45.0 bits (107), Expect = 6e-07
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 1 MDSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDG 55
+ ++ + P F+FD V+ S ++++ EIA L++++ DG
Sbjct: 63 LSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEEIA-MLVQSAL--DG 114
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum}
SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 43.8 bits (104), Expect = 2e-06
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 11 VNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDG 55
V K +D V+D +T + ++ + L++++ DG
Sbjct: 37 VEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTK-YLVQSAV--DG 78
Score = 43.8 bits (104), Expect = 2e-06
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 71 VNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
V K +D V+D +T + ++ + L++
Sbjct: 37 VEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTK-YLVQ 73
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 43.3 bits (103), Expect = 2e-06
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 1 MDSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 48
D++ + + P F D V+ +++ + ++ E+ L+
Sbjct: 31 FDADDDSIIHLLHKGK---PVSFELDKVFSPQASQQDVFQEVQ-ALVT 74
Score = 42.5 bits (101), Expect = 4e-06
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 70 IVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ P F D V+ +++ + ++ E+ L+
Sbjct: 37 SIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQ-ALVT 74
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 42.2 bits (100), Expect = 6e-06
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 1 MDSEKCTCSIVNAS----DPSAPPKGFTFDGVY--------DAKSTTEQIYNEIAYPLIE 48
+D+ K + VN + D PK F +D + + + + ++ + +++
Sbjct: 27 VDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQ 86
Query: 49 TSF 51
+F
Sbjct: 87 NAF 89
Score = 38.7 bits (91), Expect = 1e-04
Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 74 SDPSAPPKGFTFDGVY--------DAKSTTEQIYNEIAYPLIE 108
D PK F +D + + + + ++ + +++
Sbjct: 44 GDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQ 86
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 40.8 bits (96), Expect = 2e-05
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 19/70 (27%)
Query: 1 MDSEKCTCSIVNASDPSA------------PPKGFTFDGVY-------DAKSTTEQIYNE 41
MD S++ + K FTFD + + +T E +Y+
Sbjct: 64 MDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDS 123
Query: 42 IAYPLIETSF 51
+ ++ +F
Sbjct: 124 LGEEFLDHNF 133
Score = 38.9 bits (91), Expect = 8e-05
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 72 NASDPSAPPKGFTFDGVY-------DAKSTTEQIYNEIAYPLIE 108
S K FTFD + + +T E +Y+ + ++
Sbjct: 87 ARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLD 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.038
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 23 FTFDGVYDAKSTTEQIYNEIAYPLIETSFYRD-GLIDR 59
F+ + D K TE+I+ EI +F + GL+
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Score = 26.2 bits (57), Expect = 2.9
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 46 LIETSFYRDGLIDRA--VYSEKCTCSIVN--ASDPSA------PPKG---------FTFD 86
L +TS + +RA + + SI++ ++P KG F+
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 87 GVYDAKSTTEQIYNEI 102
+ D K TE+I+ EI
Sbjct: 1695 TIVDGKLKTEKIFKEI 1710
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 27.5 bits (61), Expect = 0.68
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 5/42 (11%)
Query: 57 IDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQI 98
+ V + ++P P + K EQ
Sbjct: 125 VKHIVV-----VGSMGGTNPDHPLNKLGNGNILVWKRKAEQY 161
Score = 26.4 bits (58), Expect = 1.9
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 8 CSIVNASDPSAPPKGFTFDGVYDAKSTTEQI 38
+ ++P P + K EQ
Sbjct: 131 VGSMGGTNPDHPLNKLGNGNILVWKRKAEQY 161
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 25.7 bits (57), Expect = 2.5
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDR 59
F +D K T ++Y P TSF LIDR
Sbjct: 83 VPAEFTVAFDPKGQTPRLYGVKGMP---TSF----LIDR 114
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding,
nucleus, phosphorylation transcription, transcription
regulation; 2.30A {Homo sapiens}
Length = 231
Score = 25.9 bits (56), Expect = 3.4
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 52 YRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQI 98
+R G R + S K AP +G +DG+Y +I
Sbjct: 139 WRAGKPVRVIRSFKG-----RKISKYAPEEGNRYDGIYKVVKYWPEI 180
Score = 25.5 bits (55), Expect = 4.0
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 16 PSAPPKGFTFDGVYDAKSTTEQI 38
AP +G +DG+Y +I
Sbjct: 158 KYAPEEGNRYDGIYKVVKYWPEI 180
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A
{Homo sapiens} SCOP: b.122.1.12
Length = 239
Score = 25.6 bits (55), Expect = 3.9
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 52 YRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQI 98
+R G R V + K + AP +G +DG+Y +
Sbjct: 123 WRSGKPVRVVRNVKG-----GKNSKYAPAEGNRYDGIYKVVKYWPEK 164
Score = 25.2 bits (54), Expect = 5.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 16 PSAPPKGFTFDGVYDAKSTTEQI 38
AP +G +DG+Y +
Sbjct: 142 KYAPAEGNRYDGIYKVVKYWPEK 164
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding
protein, HTH-type transcription regulators, structural
genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus
subtilis} SCOP: a.4.5.69
Length = 107
Score = 24.8 bits (55), Expect = 4.7
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 13/29 (44%)
Query: 53 RDGLIDRAVYSEKCTCSIVNASDPSAPPK 81
DG+I+R VY++ PPK
Sbjct: 54 ADGVINRIVYNQV-------------PPK 69
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix,
winged-helix-turn-HE structural genomics, PSI, protein
structure initiative; HET: MSE; 2.16A {Porphyromonas
gingivalis} SCOP: a.4.5.69
Length = 107
Score = 24.5 bits (54), Expect = 5.1
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 53 RDGLIDRAVYSE 64
GLI + Y E
Sbjct: 65 GKGLIKKKQYPE 76
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA
binding, MARR-like; 1.81A {Bacillus subtilis} PDB:
4a5m_A
Length = 131
Score = 24.6 bits (54), Expect = 5.9
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 13/29 (44%)
Query: 53 RDGLIDRAVYSEKCTCSIVNASDPSAPPK 81
DG++ R VY + PPK
Sbjct: 66 ADGIVHREVYHQV-------------PPK 81
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 24.5 bits (54), Expect = 6.1
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 22 GFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDR 59
G F V D Y+ P T+F LI+
Sbjct: 82 GVNFPVVLDTDRQVLDAYDVSPLP---TTF----LINP 112
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR,
structural genomics, PSI, Pro structure initiative;
2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Length = 112
Score = 24.5 bits (54), Expect = 6.6
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 53 RDGLIDRAVYSE 64
+DGL+ R ++E
Sbjct: 62 KDGLVHRESFNE 73
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 24.6 bits (54), Expect = 6.9
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDR 59
GFT + DA ++Y P +F +IDR
Sbjct: 84 TGFTLPVLLDADKRVGKLYGTTGVP---ETF----VIDR 115
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 24.6 bits (54), Expect = 7.7
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 22 GFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDR 59
TF V D+K + Y+ I P TSF L++
Sbjct: 93 KLTFPIVLDSKGELMKEYHIITIP---TSF----LLNE 123
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 24.2 bits (53), Expect = 9.2
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 21 KGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDR 59
G F +YDA Q + YP TS LI +
Sbjct: 84 YGLPFTVMYDADKAVGQAFGTQVYP---TSV----LIGK 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.392
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,652,834
Number of extensions: 82541
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 77
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)