RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2777
(108 letters)
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 43.0 bits (100), Expect = 1e-06
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 15 DPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
D FTFD V+D I++ P ++
Sbjct: 40 DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 76
Score = 41.5 bits (96), Expect = 4e-06
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 75 DPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
D FTFD V+D I++ P ++
Sbjct: 40 DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVD 73
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 42.6 bits (99), Expect = 2e-06
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 2 DSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
+K K + FD V+ + ++ EQ+YN+ A +++
Sbjct: 23 RGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 72
Score = 41.8 bits (97), Expect = 3e-06
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 63 SEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+K K + FD V+ + ++ EQ+YN+ A +++
Sbjct: 24 GDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVK 69
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 41.8 bits (97), Expect = 3e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR 53
+ F FD +D ++ E +Y A PL++T F
Sbjct: 79 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEG 112
Score = 40.7 bits (94), Expect = 7e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 80 PKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ F FD +D ++ E +Y A PL++
Sbjct: 79 NQAFCFDFAFDETASNEVVYRFTARPLVQ 107
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 38.8 bits (89), Expect = 4e-05
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 11 VNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
V K +D V+D +T + ++ + L++++
Sbjct: 32 VEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTK-YLVQSAV 71
Score = 38.0 bits (87), Expect = 7e-05
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 71 VNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPL 106
V K +D V+D +T + ++ + Y +
Sbjct: 32 VEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLV 67
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 38.4 bits (88), Expect = 5e-05
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 7 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIETSFYR 53
T +IVN P PK F+FD Y + ++ E Q+Y +I +++ +F
Sbjct: 31 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEG 85
Score = 37.3 bits (85), Expect = 1e-04
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 67 TCSIVNASDPSAPPKGFTFDGVYDAKSTTE--------QIYNEIAYPLIE 108
T +IVN P PK F+FD Y + ++ E Q+Y +I +++
Sbjct: 31 TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 80
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),
mitotic kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 37.3 bits (85), Expect = 1e-04
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 1 MDSEKCTCSIVNASDPS-APPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSF 51
D + S+ + K +TFD V+ A + +Y + P+++
Sbjct: 26 CDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVI 77
Score = 35.7 bits (81), Expect = 5e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 77 SAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ K +TFD V+ A + +Y + P+++
Sbjct: 43 KSSRKTYTFDMVFGASTKQIDVYRSVVCPILD 74
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Baker's yeast (Saccharomyces
cerevisiae), Kar [TaxId: 4932]}
Length = 342
Score = 36.5 bits (83), Expect = 2e-04
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 2 DSEKCTCSIVNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYRDGLIDR 59
D+ V +A F FD ++D + T ++ E+ + + + I
Sbjct: 31 DNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFA 88
Score = 36.1 bits (82), Expect = 3e-04
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 71 VNASDPSAPPKGFTFDGVYDAKSTTEQIYNEIAYP 105
V +A F FD ++D + T ++ E+
Sbjct: 40 VTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQL 74
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 36.5 bits (83), Expect = 2e-04
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 20 PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR 53
F D V+D +Y PLI +
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYEN 82
Score = 35.0 bits (79), Expect = 8e-04
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 80 PKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
F D V+D +Y PLI
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLII 77
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 34.9 bits (79), Expect = 8e-04
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1 MDSEKCTCSIVNASDPSAP-PKGFTFDGVYDAKSTTEQIYNEIAYPLIETSFYR 53
D ++A S + F+FD V+ S+ I+ ++ PLI+++
Sbjct: 71 HDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDG 123
Score = 32.6 bits (73), Expect = 0.006
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 79 PPKGFTFDGVYDAKSTTEQIYNEIAYPLIE 108
+ F+FD V+ S+ I+ ++ PLI+
Sbjct: 90 GQQIFSFDQVFHPLSSQSDIFEMVS-PLIQ 118
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 24.1 bits (52), Expect = 3.6
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 48 ETSFYRDGLIDRAVYSEKCTCSIVNASDPSAPPKGFTFDGVY 89
E +R G R V + K AP +G +DG+Y
Sbjct: 123 EAEDWRQGKPVRVVRNMKGGKHS-----KYAPAEGNRYDGIY 159
Score = 23.4 bits (50), Expect = 7.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 16 PSAPPKGFTFDGVY 29
AP +G +DG+Y
Sbjct: 146 KYAPAEGNRYDGIY 159
>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 457
Score = 23.8 bits (51), Expect = 5.9
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 15 DPSAPPKGFTFDGVYDAKSTT-----EQIYNEI 42
+ ++ P G TF YD K+ T Q+Y+
Sbjct: 414 NYASAPAGKTFQECYDVKTVTPTEEYMQVYDGA 446
Score = 23.8 bits (51), Expect = 5.9
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 75 DPSAPPKGFTFDGVYDAKSTT-----EQIYNEI 102
+ ++ P G TF YD K+ T Q+Y+
Sbjct: 414 NYASAPAGKTFQECYDVKTVTPTEEYMQVYDGA 446
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.392
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,619
Number of extensions: 16290
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 26
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)