Query psy2778
Match_columns 409
No_of_seqs 266 out of 2649
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 16:38:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1224 TIP49 DNA helicase TIP 100.0 6.3E-80 1.4E-84 572.3 22.9 393 1-408 57-450 (450)
2 KOG1942|consensus 100.0 3.7E-79 7.9E-84 553.6 26.9 401 1-408 56-456 (456)
3 PF06068 TIP49: TIP49 C-termin 100.0 7.6E-74 1.6E-78 541.1 9.9 356 1-368 42-397 (398)
4 KOG2680|consensus 100.0 1.5E-72 3.2E-77 511.8 17.9 389 1-409 58-448 (454)
5 KOG0733|consensus 100.0 1.6E-34 3.4E-39 284.7 22.6 313 3-351 217-712 (802)
6 COG1222 RPT1 ATP-dependent 26S 100.0 7E-35 1.5E-39 272.8 16.9 203 3-232 179-396 (406)
7 KOG0730|consensus 100.0 5.2E-33 1.1E-37 277.6 12.4 181 2-212 461-651 (693)
8 KOG0733|consensus 100.0 2.3E-32 5E-37 269.5 14.3 176 4-209 540-729 (802)
9 KOG0730|consensus 100.0 9E-30 2E-34 254.5 23.6 339 4-388 213-672 (693)
10 COG2256 MGS1 ATPase related to 100.0 1.5E-30 3.2E-35 247.5 15.6 138 243-407 106-250 (436)
11 KOG0736|consensus 100.0 5.4E-30 1.2E-34 258.5 16.1 184 4-214 700-896 (953)
12 KOG0734|consensus 100.0 5.5E-30 1.2E-34 249.2 12.3 174 5-209 334-517 (752)
13 KOG0735|consensus 99.9 1.8E-27 3.9E-32 238.3 15.7 175 6-210 698-882 (952)
14 KOG0738|consensus 99.9 7.4E-28 1.6E-32 227.0 11.1 178 5-210 241-429 (491)
15 KOG0727|consensus 99.9 2.1E-27 4.6E-32 212.5 13.2 177 5-210 185-373 (408)
16 KOG0728|consensus 99.9 8.3E-27 1.8E-31 208.5 15.3 203 4-233 176-393 (404)
17 KOG0739|consensus 99.9 1.8E-27 4E-32 217.4 9.4 178 5-213 162-350 (439)
18 KOG0726|consensus 99.9 1.5E-26 3.3E-31 210.8 12.7 197 4-227 214-425 (440)
19 PLN00020 ribulose bisphosphate 99.9 4.6E-26 9.9E-31 217.0 15.2 183 5-204 144-337 (413)
20 KOG2028|consensus 99.9 5.9E-26 1.3E-30 212.6 15.4 136 244-407 225-380 (554)
21 COG0464 SpoVK ATPases of the A 99.9 6.9E-26 1.5E-30 232.7 14.8 180 5-214 272-463 (494)
22 KOG0729|consensus 99.9 1E-25 2.2E-30 203.2 13.9 205 2-234 204-424 (435)
23 CHL00195 ycf46 Ycf46; Provisio 99.9 1.7E-25 3.7E-30 225.9 14.8 177 4-212 254-443 (489)
24 KOG0731|consensus 99.9 1.2E-25 2.5E-30 231.4 13.3 177 3-209 338-529 (774)
25 TIGR01243 CDC48 AAA family ATP 99.9 6E-24 1.3E-28 227.5 26.4 339 4-388 207-708 (733)
26 KOG0989|consensus 99.9 5.9E-25 1.3E-29 202.4 14.8 105 243-368 131-236 (346)
27 PF05496 RuvB_N: Holliday junc 99.9 2E-25 4.3E-30 200.0 8.9 119 243-372 103-231 (233)
28 COG1223 Predicted ATPase (AAA+ 99.9 9.7E-25 2.1E-29 196.3 12.4 170 5-206 147-327 (368)
29 TIGR01243 CDC48 AAA family ATP 99.9 1.7E-24 3.6E-29 231.7 15.5 179 5-213 483-672 (733)
30 KOG0652|consensus 99.9 8.8E-25 1.9E-29 196.6 10.5 178 3-207 199-386 (424)
31 PTZ00454 26S protease regulato 99.9 6.4E-24 1.4E-28 210.2 16.7 180 4-211 174-364 (398)
32 PRK14956 DNA polymerase III su 99.9 2.7E-23 5.9E-28 206.9 19.7 122 243-389 123-245 (484)
33 COG2812 DnaX DNA polymerase II 99.9 3.8E-24 8.2E-29 214.5 13.5 123 243-390 121-244 (515)
34 CHL00206 ycf2 Ycf2; Provisiona 99.9 9.2E-24 2E-28 231.3 17.2 197 3-232 1624-1881(2281)
35 COG2255 RuvB Holliday junction 99.9 2.6E-23 5.7E-28 189.7 17.4 137 243-390 105-251 (332)
36 KOG0737|consensus 99.9 3.6E-24 7.9E-29 202.0 11.1 177 7-213 125-311 (386)
37 COG0465 HflB ATP-dependent Zn 99.9 9.9E-24 2.1E-28 213.7 12.8 196 5-230 179-392 (596)
38 PRK03992 proteasome-activating 99.9 2.2E-23 4.8E-28 207.1 14.7 179 5-210 161-349 (389)
39 PRK07003 DNA polymerase III su 99.9 1.4E-22 3E-27 208.8 19.9 123 243-390 121-244 (830)
40 PTZ00361 26 proteosome regulat 99.9 6.1E-23 1.3E-27 204.5 15.4 177 5-209 213-400 (438)
41 KOG0740|consensus 99.9 2E-23 4.3E-28 203.7 10.5 183 6-218 183-376 (428)
42 KOG0741|consensus 99.9 2.6E-23 5.6E-28 202.7 10.2 179 9-213 256-455 (744)
43 PRK14960 DNA polymerase III su 99.9 7.9E-22 1.7E-26 201.4 21.1 123 243-390 120-243 (702)
44 PRK14958 DNA polymerase III su 99.9 3.1E-22 6.8E-27 204.1 18.1 124 243-391 121-245 (509)
45 PRK12323 DNA polymerase III su 99.9 4.9E-22 1.1E-26 202.4 18.9 124 243-391 126-250 (700)
46 TIGR01241 FtsH_fam ATP-depende 99.9 1.6E-22 3.5E-27 207.5 15.2 176 5-210 84-272 (495)
47 PRK07994 DNA polymerase III su 99.9 1.3E-21 2.7E-26 202.4 21.0 122 243-389 121-243 (647)
48 PRK14949 DNA polymerase III su 99.9 1.2E-21 2.7E-26 205.4 20.8 122 243-389 121-243 (944)
49 KOG0651|consensus 99.9 7.2E-23 1.6E-27 188.5 8.5 178 5-209 162-349 (388)
50 PRK14964 DNA polymerase III su 99.9 2.3E-21 4.9E-26 195.2 19.0 123 243-390 118-241 (491)
51 PRK06645 DNA polymerase III su 99.9 2E-21 4.3E-26 197.0 18.5 128 243-392 130-258 (507)
52 KOG0732|consensus 99.9 2.3E-22 5E-27 212.2 11.5 177 5-209 295-485 (1080)
53 PLN03025 replication factor C 99.9 3.3E-21 7.1E-26 187.2 18.3 119 243-387 101-220 (319)
54 TIGR03689 pup_AAA proteasome A 99.9 6.5E-22 1.4E-26 199.8 13.7 184 4-212 211-409 (512)
55 CHL00176 ftsH cell division pr 99.9 2.1E-21 4.7E-26 202.0 15.2 196 5-230 212-425 (638)
56 PRK14952 DNA polymerase III su 99.9 8.2E-21 1.8E-25 195.4 19.1 123 243-389 120-243 (584)
57 PRK14951 DNA polymerase III su 99.9 8.2E-21 1.8E-25 196.0 19.0 122 243-389 126-248 (618)
58 TIGR01242 26Sp45 26S proteasom 99.9 4.1E-21 8.8E-26 189.9 16.2 179 5-210 152-340 (364)
59 PRK14957 DNA polymerase III su 99.9 2E-20 4.4E-25 190.8 21.5 122 243-389 121-243 (546)
60 PRK08691 DNA polymerase III su 99.9 1.4E-20 2.9E-25 194.0 19.3 123 243-390 121-244 (709)
61 PRK13341 recombination factor 99.9 8.1E-21 1.8E-25 200.1 15.5 140 243-407 111-259 (725)
62 PRK14962 DNA polymerase III su 99.9 1.1E-20 2.3E-25 191.0 15.7 125 243-392 119-244 (472)
63 KOG0991|consensus 99.8 3.3E-21 7.1E-26 171.0 10.2 104 243-367 115-219 (333)
64 PRK14969 DNA polymerase III su 99.8 4E-20 8.6E-25 189.8 19.7 122 243-389 121-243 (527)
65 PRK14961 DNA polymerase III su 99.8 4.4E-20 9.5E-25 182.2 19.1 121 243-388 121-242 (363)
66 PRK08451 DNA polymerase III su 99.8 5.9E-20 1.3E-24 186.5 17.5 121 243-388 119-240 (535)
67 PRK10733 hflB ATP-dependent me 99.8 2.5E-20 5.5E-25 195.9 15.2 175 7-211 183-370 (644)
68 PRK05563 DNA polymerase III su 99.8 9.1E-20 2E-24 188.4 19.1 121 243-388 121-242 (559)
69 PRK14959 DNA polymerase III su 99.8 1.1E-19 2.3E-24 186.6 19.0 121 243-388 121-242 (624)
70 PRK14965 DNA polymerase III su 99.8 8.1E-20 1.8E-24 189.6 18.3 121 243-388 121-242 (576)
71 PRK07133 DNA polymerase III su 99.8 1.3E-19 2.9E-24 188.4 19.2 122 243-389 120-242 (725)
72 PRK05896 DNA polymerase III su 99.8 1.7E-19 3.8E-24 184.2 19.6 121 243-388 121-242 (605)
73 TIGR02881 spore_V_K stage V sp 99.8 8.6E-20 1.9E-24 172.3 14.7 100 264-371 129-239 (261)
74 PRK13342 recombination factor 99.8 1.8E-19 3.9E-24 180.9 17.2 121 243-388 94-217 (413)
75 PRK07764 DNA polymerase III su 99.8 2E-19 4.3E-24 191.8 18.2 123 243-389 122-245 (824)
76 PRK09111 DNA polymerase III su 99.8 3.1E-19 6.7E-24 184.7 19.0 122 243-389 134-256 (598)
77 PRK00080 ruvB Holliday junctio 99.8 4.9E-19 1.1E-23 172.7 19.2 89 301-390 161-250 (328)
78 PRK14953 DNA polymerase III su 99.8 1.3E-18 2.8E-23 176.6 22.1 121 243-388 121-242 (486)
79 PRK14963 DNA polymerase III su 99.8 1.4E-18 3E-23 177.0 20.1 120 243-388 118-238 (504)
80 PRK14955 DNA polymerase III su 99.8 6.4E-19 1.4E-23 175.8 16.5 124 243-387 129-254 (397)
81 PRK04195 replication factor C 99.8 2E-18 4.4E-23 176.6 20.2 104 264-387 118-222 (482)
82 PRK14954 DNA polymerase III su 99.8 1.1E-18 2.4E-23 180.8 17.6 124 243-387 129-254 (620)
83 PRK06647 DNA polymerase III su 99.8 1.9E-18 4E-23 178.1 17.7 121 243-388 121-242 (563)
84 TIGR00635 ruvB Holliday juncti 99.8 6.1E-18 1.3E-22 163.3 18.7 88 301-389 140-228 (305)
85 PRK04132 replication factor C 99.8 2.5E-18 5.5E-23 182.2 16.8 121 243-389 632-753 (846)
86 PRK06305 DNA polymerase III su 99.8 1.3E-17 2.8E-22 168.3 19.9 121 243-388 123-244 (451)
87 PRK14971 DNA polymerase III su 99.8 1.2E-17 2.6E-22 174.0 18.8 120 243-387 123-243 (614)
88 CHL00181 cbbX CbbX; Provisiona 99.8 8E-18 1.7E-22 160.4 15.9 98 264-369 147-253 (287)
89 KOG2035|consensus 99.8 5.5E-18 1.2E-22 154.2 13.1 106 243-369 129-235 (351)
90 TIGR02902 spore_lonB ATP-depen 99.8 1E-17 2.2E-22 172.6 16.5 125 243-388 177-330 (531)
91 PRK14948 DNA polymerase III su 99.8 1.4E-17 2.9E-22 173.6 17.5 119 243-387 123-242 (620)
92 PRK12402 replication factor C 99.8 4.8E-17 1E-21 159.2 18.7 121 242-388 126-247 (337)
93 PRK08084 DNA replication initi 99.7 6.8E-17 1.5E-21 150.0 17.6 132 244-388 100-234 (235)
94 PRK14970 DNA polymerase III su 99.7 5.9E-17 1.3E-21 160.5 18.1 121 243-388 110-231 (367)
95 PRK06893 DNA replication initi 99.7 7.4E-17 1.6E-21 149.3 17.6 84 303-388 142-228 (229)
96 PF00004 AAA: ATPase family as 99.7 5.3E-18 1.1E-22 142.6 9.0 126 12-162 1-127 (132)
97 PRK14950 DNA polymerase III su 99.7 4.1E-17 8.8E-22 170.2 17.5 122 243-389 122-244 (585)
98 TIGR02880 cbbX_cfxQ probable R 99.7 2.3E-17 5E-22 157.2 14.2 99 264-370 146-253 (284)
99 KOG0735|consensus 99.7 5.7E-16 1.2E-20 156.3 24.4 327 7-370 429-885 (952)
100 PRK00440 rfc replication facto 99.7 1.6E-16 3.5E-21 154.1 19.6 121 243-389 104-225 (319)
101 TIGR02397 dnaX_nterm DNA polym 99.7 9.6E-17 2.1E-21 158.2 17.6 121 243-388 119-240 (355)
102 KOG0742|consensus 99.7 2.9E-17 6.3E-22 156.4 12.6 172 3-208 378-587 (630)
103 TIGR02639 ClpA ATP-dependent C 99.7 1.2E-16 2.7E-21 170.9 17.3 203 9-390 203-429 (731)
104 COG0464 SpoVK ATPases of the A 99.7 3.5E-15 7.6E-20 153.5 27.4 341 4-389 13-482 (494)
105 PRK08727 hypothetical protein; 99.7 5.2E-16 1.1E-20 144.0 18.2 86 301-388 141-229 (233)
106 PRK11034 clpA ATP-dependent Cl 99.7 1.4E-15 3.1E-20 161.2 23.3 139 9-183 207-360 (758)
107 PRK06620 hypothetical protein; 99.7 6.7E-16 1.4E-20 141.1 16.8 123 244-387 88-213 (214)
108 PTZ00112 origin recognition co 99.7 9.5E-16 2.1E-20 159.3 19.4 125 244-388 872-1004(1164)
109 CHL00095 clpC Clp protease ATP 99.7 6.3E-15 1.4E-19 159.6 23.2 138 7-181 198-350 (821)
110 PRK14700 recombination factor 99.7 2E-16 4.3E-21 147.8 9.3 116 285-407 6-127 (300)
111 KOG0744|consensus 99.7 2.1E-16 4.5E-21 146.8 9.3 149 9-184 177-339 (423)
112 PRK00149 dnaA chromosomal repl 99.7 2.8E-15 6E-20 152.3 17.1 86 303-390 261-349 (450)
113 PRK05642 DNA replication initi 99.7 5.9E-15 1.3E-19 136.9 17.5 85 302-388 146-233 (234)
114 PRK09112 DNA polymerase III su 99.6 3.4E-15 7.4E-20 145.9 15.8 101 243-366 143-244 (351)
115 PRK00411 cdc6 cell division co 99.6 8.2E-15 1.8E-19 146.6 18.5 135 243-390 140-282 (394)
116 TIGR02928 orc1/cdc6 family rep 99.6 6.5E-15 1.4E-19 145.8 17.6 133 243-389 131-273 (365)
117 PRK08903 DnaA regulatory inact 99.6 2.6E-14 5.7E-19 132.1 19.5 84 303-388 138-224 (227)
118 TIGR03345 VI_ClpV1 type VI sec 99.6 7.9E-15 1.7E-19 158.4 18.1 197 9-384 208-425 (852)
119 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.7E-14 3.6E-19 133.2 17.6 81 305-387 142-225 (226)
120 PHA02544 44 clamp loader, smal 99.6 2E-14 4.3E-19 139.6 19.0 116 243-385 102-226 (316)
121 PRK07399 DNA polymerase III su 99.6 3.9E-15 8.5E-20 143.5 13.8 101 243-367 126-226 (314)
122 TIGR00362 DnaA chromosomal rep 99.6 1.2E-14 2.6E-19 145.8 17.9 85 303-389 249-336 (405)
123 TIGR00390 hslU ATP-dependent p 99.6 8.6E-15 1.9E-19 143.2 16.1 326 7-388 45-428 (441)
124 COG0466 Lon ATP-dependent Lon 99.6 8.4E-15 1.8E-19 149.0 16.4 77 5-87 346-432 (782)
125 TIGR02903 spore_lon_C ATP-depe 99.6 1.6E-14 3.5E-19 151.1 18.9 127 242-389 266-429 (615)
126 PRK07940 DNA polymerase III su 99.6 8E-15 1.7E-19 145.2 15.0 96 243-364 119-215 (394)
127 TIGR00763 lon ATP-dependent pr 99.6 1.5E-14 3.2E-19 155.8 18.2 75 7-87 345-429 (775)
128 PRK12422 chromosomal replicati 99.6 2.8E-14 6.1E-19 143.7 18.2 87 301-389 250-342 (445)
129 TIGR00678 holB DNA polymerase 99.6 9.7E-15 2.1E-19 131.0 12.5 90 243-359 98-188 (188)
130 PRK05707 DNA polymerase III su 99.6 4.5E-14 9.7E-19 136.9 16.4 97 243-364 108-205 (328)
131 KOG0743|consensus 99.6 8.1E-15 1.8E-19 142.6 10.8 139 3-172 229-374 (457)
132 COG1219 ClpX ATP-dependent pro 99.6 1.1E-14 2.5E-19 135.1 10.9 81 8-90 96-180 (408)
133 PRK09087 hypothetical protein; 99.6 1.1E-13 2.5E-18 127.5 17.6 84 304-389 135-221 (226)
134 PRK05342 clpX ATP-dependent pr 99.6 8E-14 1.7E-18 138.7 17.6 79 8-88 107-189 (412)
135 PRK14087 dnaA chromosomal repl 99.6 1.1E-13 2.5E-18 139.7 18.8 87 302-389 255-347 (450)
136 PRK14088 dnaA chromosomal repl 99.6 9.8E-14 2.1E-18 140.0 16.7 86 303-390 244-332 (440)
137 TIGR02640 gas_vesic_GvpN gas v 99.6 1.6E-13 3.5E-18 129.5 16.9 123 243-388 107-255 (262)
138 PRK14086 dnaA chromosomal repl 99.5 2.9E-13 6.2E-18 139.0 18.1 87 302-390 426-515 (617)
139 PRK13407 bchI magnesium chelat 99.5 2.6E-13 5.7E-18 131.3 16.7 129 243-389 130-305 (334)
140 COG0470 HolB ATPase involved i 99.5 4.1E-14 8.8E-19 137.6 11.0 95 243-369 111-206 (325)
141 KOG0990|consensus 99.5 3.8E-14 8.2E-19 132.0 10.1 106 243-369 133-239 (360)
142 PRK07993 DNA polymerase III su 99.5 3.1E-13 6.7E-18 131.4 15.9 96 243-364 110-206 (334)
143 COG1474 CDC6 Cdc6-related prot 99.5 2.6E-13 5.7E-18 133.2 15.5 131 243-387 125-262 (366)
144 TIGR00602 rad24 checkpoint pro 99.5 1.5E-13 3.2E-18 142.8 14.2 83 303-386 256-351 (637)
145 PRK06871 DNA polymerase III su 99.5 7.7E-13 1.7E-17 127.5 17.3 96 243-364 109-205 (325)
146 PRK05201 hslU ATP-dependent pr 99.5 1.2E-13 2.6E-18 135.2 11.6 147 241-388 249-430 (443)
147 PRK10787 DNA-binding ATP-depen 99.5 8.9E-13 1.9E-17 141.1 18.9 88 301-388 475-580 (784)
148 PRK07471 DNA polymerase III su 99.5 4.7E-13 1E-17 131.5 15.6 99 242-365 142-241 (365)
149 KOG1969|consensus 99.5 9.6E-13 2.1E-17 133.9 17.7 82 277-372 439-520 (877)
150 KOG2004|consensus 99.5 5.5E-13 1.2E-17 135.3 15.2 78 5-86 434-519 (906)
151 TIGR00382 clpX endopeptidase C 99.5 1.1E-12 2.4E-17 130.0 16.9 79 9-89 116-198 (413)
152 CHL00081 chlI Mg-protoporyphyr 99.5 1.5E-12 3.3E-17 126.4 17.0 131 242-390 145-322 (350)
153 TIGR02030 BchI-ChlI magnesium 99.5 1.2E-12 2.6E-17 127.0 16.0 130 243-390 133-309 (337)
154 PRK13531 regulatory ATPase Rav 99.5 1.9E-12 4.2E-17 129.2 17.6 129 243-388 109-282 (498)
155 KOG0745|consensus 99.5 1.7E-12 3.8E-17 125.1 15.6 78 8-87 225-306 (564)
156 TIGR03346 chaperone_ClpB ATP-d 99.5 1.4E-12 3E-17 141.9 17.0 79 8-88 193-282 (852)
157 PF00308 Bac_DnaA: Bacterial d 99.5 3.4E-12 7.3E-17 117.2 16.9 70 301-371 145-217 (219)
158 PRK05564 DNA polymerase III su 99.5 4.9E-12 1.1E-16 122.6 18.8 97 243-364 95-192 (313)
159 PRK08058 DNA polymerase III su 99.4 1.1E-12 2.4E-17 127.8 14.2 94 243-364 112-206 (329)
160 PRK10865 protein disaggregatio 99.4 2E-12 4.4E-17 140.1 15.7 79 9-89 199-288 (857)
161 PRK06964 DNA polymerase III su 99.4 8.1E-13 1.8E-17 128.2 10.7 93 243-364 134-227 (342)
162 PRK08769 DNA polymerase III su 99.4 4.3E-12 9.3E-17 122.1 14.6 95 243-364 115-210 (319)
163 KOG0736|consensus 99.4 7.5E-11 1.6E-15 120.9 22.9 165 10-206 432-606 (953)
164 TIGR02031 BchD-ChlD magnesium 99.4 1.7E-11 3.7E-16 127.9 18.7 133 243-391 86-259 (589)
165 TIGR01650 PD_CobS cobaltochela 99.4 2.1E-12 4.5E-17 123.6 10.8 41 5-47 60-100 (327)
166 TIGR03015 pepcterm_ATPase puta 99.4 5E-11 1.1E-15 112.9 20.1 133 243-389 125-265 (269)
167 PRK06090 DNA polymerase III su 99.4 1E-11 2.3E-16 119.4 14.6 93 243-364 110-203 (319)
168 COG0593 DnaA ATPase involved i 99.4 6.5E-11 1.4E-15 116.3 19.9 88 303-392 225-315 (408)
169 TIGR02442 Cob-chelat-sub cobal 99.3 4.8E-11 1E-15 125.8 18.0 131 243-391 128-305 (633)
170 COG0714 MoxR-like ATPases [Gen 99.3 7.3E-11 1.6E-15 115.2 16.7 138 243-394 114-300 (329)
171 TIGR03345 VI_ClpV1 type VI sec 99.3 4.3E-11 9.4E-16 129.6 15.5 66 302-368 750-828 (852)
172 PRK05818 DNA polymerase III su 99.2 4.8E-10 1E-14 103.9 16.4 115 243-394 90-215 (261)
173 PRK05917 DNA polymerase III su 99.2 4.4E-10 9.6E-15 106.2 16.3 78 243-356 97-175 (290)
174 TIGR02639 ClpA ATP-dependent C 99.2 2.1E-10 4.6E-15 123.1 15.1 117 243-366 555-707 (731)
175 PF13177 DNA_pol3_delta2: DNA 99.2 3.2E-11 6.9E-16 105.5 7.1 58 243-320 104-162 (162)
176 PRK13406 bchD magnesium chelat 99.2 1E-09 2.2E-14 113.8 17.6 133 243-391 95-251 (584)
177 smart00350 MCM minichromosome 99.2 1.8E-09 3.8E-14 111.3 19.1 142 243-391 302-505 (509)
178 PF03215 Rad17: Rad17 cell cyc 99.2 5.4E-10 1.2E-14 114.3 14.9 66 302-368 194-269 (519)
179 PRK08699 DNA polymerase III su 99.1 2.2E-09 4.7E-14 104.1 15.4 68 243-330 115-183 (325)
180 PF05673 DUF815: Protein of un 99.1 4.1E-09 8.9E-14 96.4 15.4 59 307-366 181-245 (249)
181 TIGR00764 lon_rel lon-related 99.1 1.2E-09 2.7E-14 114.2 13.4 130 242-389 218-390 (608)
182 PF07726 AAA_3: ATPase family 99.1 2E-10 4.4E-15 94.6 5.7 56 243-312 64-130 (131)
183 COG0542 clpA ATP-binding subun 99.1 3.4E-09 7.4E-14 111.3 15.9 106 9-143 191-307 (786)
184 KOG1514|consensus 99.1 2.7E-09 5.8E-14 108.9 14.4 80 312-392 569-657 (767)
185 COG0542 clpA ATP-binding subun 99.0 1.7E-09 3.7E-14 113.5 12.7 75 6-86 518-607 (786)
186 TIGR01817 nifA Nif-specific re 99.0 3.6E-09 7.7E-14 110.1 14.8 126 243-384 292-439 (534)
187 PRK07276 DNA polymerase III su 99.0 8.8E-09 1.9E-13 97.8 15.3 93 243-364 106-199 (290)
188 TIGR00368 Mg chelatase-related 99.0 5.6E-09 1.2E-13 106.6 14.7 139 243-388 297-497 (499)
189 PRK07132 DNA polymerase III su 99.0 6.1E-09 1.3E-13 99.6 13.9 94 243-364 92-186 (299)
190 PRK08485 DNA polymerase III su 99.0 1.5E-09 3.2E-14 96.0 8.6 105 243-369 56-174 (206)
191 TIGR02974 phageshock_pspF psp 99.0 4.5E-09 9.7E-14 102.4 12.9 115 243-370 95-233 (329)
192 COG1239 ChlI Mg-chelatase subu 99.0 1.5E-08 3.3E-13 98.7 16.2 130 242-390 145-322 (423)
193 TIGR03346 chaperone_ClpB ATP-d 99.0 7.7E-09 1.7E-13 112.8 15.8 119 243-368 669-823 (852)
194 PRK10865 protein disaggregatio 99.0 7.2E-09 1.6E-13 112.8 14.9 118 243-367 672-825 (857)
195 PHA02244 ATPase-like protein 99.0 6.7E-09 1.4E-13 100.7 12.0 34 9-44 119-152 (383)
196 PF07724 AAA_2: AAA domain (Cd 98.9 1.8E-09 3.8E-14 95.2 6.0 79 8-87 2-83 (171)
197 smart00763 AAA_PrkA PrkA AAA d 98.9 4.1E-09 8.8E-14 102.2 8.8 98 241-351 236-349 (361)
198 COG1220 HslU ATP-dependent pro 98.9 3.4E-08 7.3E-13 93.2 13.7 140 242-388 251-431 (444)
199 TIGR02329 propionate_PrpR prop 98.9 3.7E-08 8E-13 101.4 15.3 130 243-385 309-465 (526)
200 smart00382 AAA ATPases associa 98.9 6.7E-09 1.5E-13 86.9 7.8 76 9-87 2-93 (148)
201 PRK13765 ATP-dependent proteas 98.9 1.2E-07 2.5E-12 99.4 18.4 128 242-387 227-397 (637)
202 PRK09862 putative ATP-dependen 98.9 6.5E-08 1.4E-12 98.5 15.9 135 243-389 296-491 (506)
203 KOG0741|consensus 98.9 2.7E-08 5.8E-13 98.7 12.4 118 5-148 534-653 (744)
204 PRK11388 DNA-binding transcrip 98.9 1.5E-08 3.3E-13 107.6 11.7 127 243-385 418-566 (638)
205 PRK15424 propionate catabolism 98.8 4.3E-08 9.4E-13 100.9 14.3 128 243-383 324-478 (538)
206 PRK05022 anaerobic nitric oxid 98.8 6.6E-08 1.4E-12 99.9 15.4 116 243-371 283-421 (509)
207 KOG1970|consensus 98.8 8.8E-08 1.9E-12 95.6 15.2 86 276-367 227-320 (634)
208 COG1221 PspF Transcriptional r 98.8 3.3E-08 7.1E-13 97.1 11.9 111 243-371 175-310 (403)
209 COG3604 FhlA Transcriptional r 98.8 2.9E-08 6.2E-13 98.2 10.2 115 243-370 319-456 (550)
210 COG2204 AtoC Response regulato 98.8 4E-08 8.7E-13 98.2 11.2 116 243-371 237-375 (464)
211 PRK11608 pspF phage shock prot 98.8 1.3E-07 2.8E-12 92.1 14.2 115 243-370 102-240 (326)
212 PRK10820 DNA-binding transcrip 98.8 7.4E-08 1.6E-12 99.6 12.9 125 243-383 300-447 (520)
213 cd00009 AAA The AAA+ (ATPases 98.7 4.8E-08 1E-12 82.4 7.7 73 8-84 18-96 (151)
214 PRK11034 clpA ATP-dependent Cl 98.7 2.7E-08 5.9E-13 106.2 7.5 65 302-366 635-711 (758)
215 COG3829 RocR Transcriptional r 98.7 8.4E-08 1.8E-12 96.1 10.2 127 243-384 342-491 (560)
216 KOG1968|consensus 98.6 9.6E-08 2.1E-12 102.5 9.7 91 264-368 447-537 (871)
217 PRK15429 formate hydrogenlyase 98.6 3.4E-07 7.4E-12 98.1 13.5 115 243-370 472-609 (686)
218 PRK11331 5-methylcytosine-spec 98.6 1.1E-07 2.3E-12 94.8 7.8 79 8-87 193-287 (459)
219 PTZ00111 DNA replication licen 98.6 2E-06 4.4E-11 92.1 17.8 144 243-393 559-807 (915)
220 PRK15115 response regulator Gl 98.6 1E-06 2.2E-11 89.6 15.1 127 243-385 230-379 (444)
221 COG0606 Predicted ATPase with 98.6 6.5E-07 1.4E-11 88.7 13.0 139 243-389 285-484 (490)
222 PRK08181 transposase; Validate 98.6 1.1E-07 2.5E-12 89.6 7.2 74 8-86 105-181 (269)
223 PF05621 TniB: Bacterial TniB 98.6 3.4E-06 7.4E-11 79.8 16.6 135 241-386 145-285 (302)
224 PF07728 AAA_5: AAA domain (dy 98.5 1.4E-08 3.1E-13 86.2 0.3 71 11-85 1-78 (139)
225 COG3267 ExeA Type II secretory 98.5 5.7E-06 1.2E-10 75.8 16.5 125 243-384 133-267 (269)
226 TIGR02915 PEP_resp_reg putativ 98.5 1.6E-06 3.4E-11 88.3 14.5 125 243-383 235-382 (445)
227 PF01637 Arch_ATPase: Archaeal 98.5 1.7E-06 3.7E-11 79.4 13.2 107 243-360 120-232 (234)
228 PRK10923 glnG nitrogen regulat 98.5 2.5E-06 5.4E-11 87.5 15.6 126 243-384 234-382 (469)
229 KOG2227|consensus 98.5 3.9E-06 8.4E-11 82.7 15.2 116 243-375 258-384 (529)
230 COG2607 Predicted ATPase (AAA+ 98.5 5.2E-06 1.1E-10 75.2 14.8 59 307-366 213-277 (287)
231 TIGR01818 ntrC nitrogen regula 98.5 3.2E-06 6.9E-11 86.5 15.3 127 243-385 230-379 (463)
232 PRK11361 acetoacetate metaboli 98.5 2.1E-06 4.5E-11 87.6 14.0 126 243-384 239-387 (457)
233 PF00158 Sigma54_activat: Sigm 98.5 4.5E-07 9.8E-12 79.7 7.6 41 8-48 21-62 (168)
234 PRK06526 transposase; Provisio 98.5 2.3E-07 5E-12 87.0 5.8 70 9-85 98-172 (254)
235 PF01695 IstB_IS21: IstB-like 98.4 2.3E-07 5E-12 82.4 5.2 71 9-84 47-120 (178)
236 PRK12377 putative replication 98.4 5.2E-07 1.1E-11 84.1 7.4 70 10-84 102-175 (248)
237 PRK10365 transcriptional regul 98.4 5.6E-06 1.2E-10 84.1 14.9 127 243-385 235-384 (441)
238 CHL00095 clpC Clp protease ATP 98.4 5.3E-07 1.1E-11 98.3 7.8 49 303-351 702-760 (821)
239 PRK07952 DNA replication prote 98.4 6.6E-07 1.4E-11 83.2 6.9 70 10-84 100-174 (244)
240 PRK08116 hypothetical protein; 98.4 7.6E-07 1.7E-11 84.3 7.1 70 9-83 114-189 (268)
241 PRK06921 hypothetical protein; 98.4 8.4E-07 1.8E-11 83.8 7.4 70 9-83 117-188 (266)
242 PRK08939 primosomal protein Dn 98.4 8.6E-07 1.9E-11 85.4 7.5 71 9-84 156-229 (306)
243 PRK09183 transposase/IS protei 98.4 9.8E-07 2.1E-11 83.1 7.6 74 8-85 101-177 (259)
244 COG1484 DnaC DNA replication p 98.4 8.5E-07 1.8E-11 83.2 7.1 73 8-84 104-179 (254)
245 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.6E-11 73.4 7.3 71 10-84 3-73 (128)
246 PRK06835 DNA replication prote 98.3 1.9E-06 4.1E-11 83.7 7.1 71 9-84 183-258 (329)
247 PF13401 AAA_22: AAA domain; P 98.1 2E-06 4.3E-11 71.9 3.9 75 9-85 4-100 (131)
248 COG5271 MDN1 AAA ATPase contai 98.1 2E-05 4.3E-10 87.2 12.2 72 279-361 1000-1071(4600)
249 PF00493 MCM: MCM2/3/5 family 98.1 1.4E-06 3E-11 85.0 3.4 142 243-391 123-327 (331)
250 PHA00729 NTP-binding motif con 98.0 6.5E-06 1.4E-10 75.2 5.2 25 10-34 18-42 (226)
251 PF13207 AAA_17: AAA domain; P 98.0 4.9E-06 1.1E-10 68.6 4.0 31 12-44 2-32 (121)
252 COG1223 Predicted ATPase (AAA+ 98.0 6E-05 1.3E-09 69.2 10.3 137 238-388 207-353 (368)
253 PRK00131 aroK shikimate kinase 98.0 9E-06 1.9E-10 71.4 4.8 34 8-43 3-36 (175)
254 PRK08118 topology modulation p 97.9 1.9E-05 4.1E-10 69.4 6.3 33 10-44 2-34 (167)
255 TIGR01128 holA DNA polymerase 97.9 8.9E-05 1.9E-09 71.3 11.4 127 243-388 48-176 (302)
256 COG5271 MDN1 AAA ATPase contai 97.9 4.3E-05 9.3E-10 84.7 9.8 98 300-402 1671-1790(4600)
257 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 2.5E-05 5.4E-10 69.4 6.1 38 12-53 2-39 (183)
258 PRK14532 adenylate kinase; Pro 97.9 2.8E-05 6.1E-10 69.5 6.3 38 11-52 2-39 (188)
259 COG0563 Adk Adenylate kinase a 97.9 2E-05 4.3E-10 69.9 5.0 44 11-58 2-45 (178)
260 PF13671 AAA_33: AAA domain; P 97.8 4.2E-05 9.1E-10 64.9 6.8 23 12-34 2-24 (143)
261 PRK14531 adenylate kinase; Pro 97.8 2.8E-05 6.1E-10 69.3 6.0 39 10-52 3-41 (183)
262 KOG1051|consensus 97.8 3.9E-05 8.5E-10 82.3 7.7 72 8-85 590-673 (898)
263 PRK07261 topology modulation p 97.8 4.1E-05 8.8E-10 67.5 6.6 40 11-52 2-41 (171)
264 TIGR01618 phage_P_loop phage n 97.8 2.2E-05 4.8E-10 71.7 5.1 23 9-31 12-34 (220)
265 PRK13947 shikimate kinase; Pro 97.8 2.2E-05 4.7E-10 69.0 4.5 31 11-43 3-33 (171)
266 cd00227 CPT Chloramphenicol (C 97.8 5.1E-05 1.1E-09 67.1 6.7 34 9-44 2-35 (175)
267 PRK00625 shikimate kinase; Pro 97.8 2.4E-05 5.2E-10 69.1 4.4 32 11-44 2-33 (173)
268 PF03969 AFG1_ATPase: AFG1-lik 97.8 0.00041 8.9E-09 68.4 13.3 29 6-34 59-87 (362)
269 PRK15455 PrkA family serine pr 97.8 0.00017 3.8E-09 73.9 10.7 36 8-44 102-137 (644)
270 KOG3347|consensus 97.8 2.5E-05 5.3E-10 65.8 3.8 34 9-44 7-40 (176)
271 cd01120 RecA-like_NTPases RecA 97.8 8.5E-05 1.8E-09 63.9 7.4 34 11-44 1-35 (165)
272 PRK03839 putative kinase; Prov 97.8 2.8E-05 6.1E-10 69.0 4.3 31 11-43 2-32 (180)
273 PRK03992 proteasome-activating 97.7 0.00024 5.2E-09 71.0 11.3 137 240-390 223-372 (389)
274 cd00464 SK Shikimate kinase (S 97.7 3.2E-05 6.9E-10 66.5 4.2 31 11-43 1-31 (154)
275 PRK06581 DNA polymerase III su 97.7 0.00021 4.6E-09 65.4 9.6 99 243-365 91-190 (263)
276 PF14532 Sigma54_activ_2: Sigm 97.7 1.8E-05 3.9E-10 67.2 2.5 63 9-87 21-84 (138)
277 COG1618 Predicted nucleotide k 97.7 7.8E-05 1.7E-09 63.8 6.0 26 9-34 5-30 (179)
278 PRK13949 shikimate kinase; Pro 97.7 3.7E-05 8E-10 67.7 4.3 32 10-43 2-33 (169)
279 PF00406 ADK: Adenylate kinase 97.7 4.8E-05 1E-09 65.5 4.8 48 14-65 1-48 (151)
280 COG1241 MCM2 Predicted ATPase 97.7 0.00058 1.3E-08 71.8 13.6 152 243-401 385-603 (682)
281 cd02020 CMPK Cytidine monophos 97.7 0.0001 2.2E-09 62.7 6.8 30 12-43 2-31 (147)
282 PRK09376 rho transcription ter 97.7 5.2E-05 1.1E-09 74.4 5.5 79 9-87 169-271 (416)
283 cd01128 rho_factor Transcripti 97.7 0.00011 2.4E-09 68.6 7.5 28 8-35 15-42 (249)
284 PTZ00088 adenylate kinase 1; P 97.7 7E-05 1.5E-09 69.1 6.1 40 10-53 7-46 (229)
285 TIGR03574 selen_PSTK L-seryl-t 97.7 0.00013 2.8E-09 68.4 7.9 36 12-47 2-38 (249)
286 PRK14529 adenylate kinase; Pro 97.7 7.9E-05 1.7E-09 68.4 6.2 39 11-53 2-40 (223)
287 PLN02674 adenylate kinase 97.7 7.1E-05 1.5E-09 69.5 5.9 52 9-64 31-82 (244)
288 COG0703 AroK Shikimate kinase 97.7 3.9E-05 8.5E-10 66.9 3.8 34 9-44 2-35 (172)
289 PRK06762 hypothetical protein; 97.7 0.0001 2.2E-09 64.5 6.4 38 9-48 2-39 (166)
290 PLN02200 adenylate kinase fami 97.7 9.8E-05 2.1E-09 68.5 6.6 41 9-53 43-83 (234)
291 cd01428 ADK Adenylate kinase ( 97.7 8.7E-05 1.9E-09 66.4 6.1 37 12-52 2-38 (194)
292 PTZ00454 26S protease regulato 97.7 0.0004 8.7E-09 69.4 11.4 136 240-389 237-385 (398)
293 TIGR01241 FtsH_fam ATP-depende 97.7 0.00046 9.9E-09 71.3 12.2 136 241-390 147-295 (495)
294 cd01131 PilT Pilus retraction 97.7 8.7E-05 1.9E-09 67.0 6.1 69 10-81 2-83 (198)
295 PRK13948 shikimate kinase; Pro 97.6 6.3E-05 1.4E-09 66.9 4.9 34 8-43 9-42 (182)
296 CHL00176 ftsH cell division pr 97.6 0.00063 1.4E-08 71.9 13.1 137 240-390 274-423 (638)
297 TIGR01242 26Sp45 26S proteasom 97.6 0.00053 1.1E-08 68.0 11.6 134 241-388 215-361 (364)
298 PRK14530 adenylate kinase; Pro 97.6 6.8E-05 1.5E-09 68.6 4.8 37 9-49 3-39 (215)
299 TIGR01351 adk adenylate kinase 97.6 8.6E-05 1.9E-09 67.7 5.4 38 12-53 2-39 (210)
300 PLN02459 probable adenylate ki 97.6 0.00014 2.9E-09 68.1 6.5 53 10-66 30-82 (261)
301 COG1222 RPT1 ATP-dependent 26S 97.6 0.00048 1E-08 66.2 10.2 148 228-388 232-390 (406)
302 TIGR02237 recomb_radB DNA repa 97.6 0.00026 5.6E-09 64.3 8.2 43 4-46 7-50 (209)
303 PRK14527 adenylate kinase; Pro 97.6 0.00012 2.5E-09 65.7 5.6 40 9-52 6-45 (191)
304 PRK06217 hypothetical protein; 97.6 8.3E-05 1.8E-09 66.3 4.5 33 10-44 2-34 (183)
305 PRK13808 adenylate kinase; Pro 97.6 0.00016 3.5E-09 70.0 6.7 39 11-53 2-40 (333)
306 PRK00279 adk adenylate kinase; 97.6 0.00014 3.1E-09 66.5 6.2 39 11-53 2-40 (215)
307 PF01078 Mg_chelatase: Magnesi 97.6 4.5E-05 9.8E-10 68.6 2.7 26 9-34 22-47 (206)
308 PRK14526 adenylate kinase; Pro 97.6 0.00012 2.5E-09 66.8 5.4 39 11-53 2-40 (211)
309 PRK14528 adenylate kinase; Pro 97.5 6.2E-05 1.3E-09 67.3 3.4 37 10-50 2-38 (186)
310 cd01124 KaiC KaiC is a circadi 97.5 0.00025 5.4E-09 63.0 7.3 22 12-33 2-23 (187)
311 PF00910 RNA_helicase: RNA hel 97.5 5.6E-05 1.2E-09 61.2 2.8 23 12-34 1-23 (107)
312 cd02021 GntK Gluconate kinase 97.5 8.1E-05 1.8E-09 63.8 4.0 24 12-35 2-25 (150)
313 PF12780 AAA_8: P-loop contain 97.5 0.0068 1.5E-07 57.3 17.2 69 7-81 29-98 (268)
314 TIGR01313 therm_gnt_kin carboh 97.5 8.6E-05 1.9E-09 64.7 3.8 27 12-40 1-27 (163)
315 PRK06067 flagellar accessory p 97.5 0.0004 8.8E-09 64.3 8.4 31 3-33 19-49 (234)
316 COG1936 Predicted nucleotide k 97.5 9.2E-05 2E-09 64.1 3.7 30 11-43 2-31 (180)
317 TIGR01420 pilT_fam pilus retra 97.5 0.00018 3.9E-09 70.7 6.2 72 8-82 121-205 (343)
318 PRK05057 aroK shikimate kinase 97.5 0.00014 3E-09 64.2 4.9 34 9-44 4-37 (172)
319 PRK13946 shikimate kinase; Pro 97.5 0.00011 2.4E-09 65.5 4.3 34 8-43 9-42 (184)
320 PHA02530 pseT polynucleotide k 97.5 0.0003 6.6E-09 67.6 7.5 35 10-47 3-37 (300)
321 PF12774 AAA_6: Hydrolytic ATP 97.5 0.00027 5.9E-09 65.3 6.8 65 10-85 33-97 (231)
322 TIGR00767 rho transcription te 97.5 0.00025 5.4E-09 70.0 6.8 28 8-35 167-194 (415)
323 PRK03731 aroL shikimate kinase 97.5 0.00013 2.9E-09 64.0 4.5 32 10-43 3-34 (171)
324 PTZ00361 26 proteosome regulat 97.5 0.00075 1.6E-08 68.1 10.3 134 241-388 276-422 (438)
325 COG3284 AcoR Transcriptional a 97.5 0.00057 1.2E-08 70.2 9.4 115 243-371 409-541 (606)
326 PRK11823 DNA repair protein Ra 97.5 0.00028 6.2E-09 71.6 7.3 80 5-87 76-171 (446)
327 PHA02624 large T antigen; Prov 97.5 0.00014 3.1E-09 74.8 5.1 66 4-86 426-492 (647)
328 PF13604 AAA_30: AAA domain; P 97.5 0.00028 6E-09 63.7 6.5 76 10-85 19-106 (196)
329 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00017 3.6E-09 64.2 5.0 35 11-49 5-39 (188)
330 COG1373 Predicted ATPase (AAA+ 97.4 0.00058 1.3E-08 68.4 9.2 68 11-84 39-106 (398)
331 PF00931 NB-ARC: NB-ARC domain 97.4 0.0014 3.1E-08 62.3 11.5 51 311-363 149-202 (287)
332 cd01394 radB RadB. The archaea 97.4 0.00063 1.4E-08 62.3 8.6 41 5-45 15-56 (218)
333 COG1102 Cmk Cytidylate kinase 97.4 0.00014 2.9E-09 62.3 3.6 33 12-48 3-35 (179)
334 PF13245 AAA_19: Part of AAA d 97.4 0.00036 7.7E-09 52.7 5.6 24 10-33 11-35 (76)
335 COG4178 ABC-type uncharacteriz 97.4 0.00072 1.6E-08 70.0 9.5 30 6-35 416-445 (604)
336 cd01121 Sms Sms (bacterial rad 97.4 0.00038 8.3E-09 68.9 7.3 80 5-87 78-173 (372)
337 PRK06547 hypothetical protein; 97.4 0.00018 4E-09 63.4 4.5 34 7-42 13-46 (172)
338 cd02027 APSK Adenosine 5'-phos 97.4 0.00061 1.3E-08 58.6 7.6 34 12-47 2-38 (149)
339 PF13238 AAA_18: AAA domain; P 97.4 0.00013 2.7E-09 60.4 3.2 22 12-33 1-22 (129)
340 cd00046 DEXDc DEAD-like helica 97.4 0.00066 1.4E-08 56.1 7.6 37 10-46 1-40 (144)
341 PRK13764 ATPase; Provisional 97.4 0.00025 5.4E-09 73.9 5.9 27 9-35 257-283 (602)
342 PRK13833 conjugal transfer pro 97.4 0.00029 6.2E-09 68.2 6.0 72 9-83 144-226 (323)
343 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.0036 7.8E-08 60.7 13.4 36 8-44 87-122 (358)
344 cd01130 VirB11-like_ATPase Typ 97.4 0.00043 9.2E-09 61.9 6.6 73 8-83 24-111 (186)
345 COG3854 SpoIIIAA ncharacterize 97.4 0.00033 7.1E-09 63.4 5.7 72 11-84 139-230 (308)
346 PRK02496 adk adenylate kinase; 97.4 0.00018 3.8E-09 64.1 4.0 25 11-35 3-27 (184)
347 PRK08533 flagellar accessory p 97.4 0.00087 1.9E-08 62.0 8.8 40 5-44 20-60 (230)
348 PRK04296 thymidine kinase; Pro 97.4 0.00033 7.2E-09 62.8 5.8 24 10-33 3-26 (190)
349 PRK13900 type IV secretion sys 97.4 0.00038 8.3E-09 67.9 6.6 73 8-83 159-246 (332)
350 PRK05574 holA DNA polymerase I 97.3 0.0018 3.9E-08 63.3 11.3 80 306-389 133-212 (340)
351 PRK04040 adenylate kinase; Pro 97.3 0.00023 5E-09 63.8 4.5 26 9-34 2-27 (188)
352 cd02019 NK Nucleoside/nucleoti 97.3 0.00019 4.1E-09 53.1 3.3 22 12-33 2-23 (69)
353 COG4088 Predicted nucleotide k 97.3 0.00017 3.7E-09 64.1 3.5 25 11-35 3-27 (261)
354 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0028 6E-08 65.0 12.8 138 240-390 317-463 (489)
355 PF00437 T2SE: Type II/IV secr 97.3 0.00029 6.4E-09 66.7 5.2 73 9-84 127-209 (270)
356 PRK05800 cobU adenosylcobinami 97.3 0.00097 2.1E-08 58.7 8.0 37 11-49 3-39 (170)
357 PRK09361 radB DNA repair and r 97.3 0.00049 1.1E-08 63.3 6.4 40 4-45 18-60 (225)
358 PF08433 KTI12: Chromatin asso 97.3 0.00077 1.7E-08 63.8 7.4 74 11-84 3-82 (270)
359 PF01745 IPT: Isopentenyl tran 97.3 0.00035 7.6E-09 62.7 4.7 37 11-49 3-39 (233)
360 PF12775 AAA_7: P-loop contain 97.3 4.7E-05 1E-09 72.2 -0.9 27 9-35 33-59 (272)
361 PRK13851 type IV secretion sys 97.3 0.0005 1.1E-08 67.3 6.0 73 8-83 161-247 (344)
362 TIGR02525 plasmid_TraJ plasmid 97.2 0.00062 1.3E-08 67.3 6.6 73 9-84 149-237 (372)
363 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00035 7.5E-09 58.7 4.0 29 7-35 20-48 (133)
364 PF09848 DUF2075: Uncharacteri 97.2 0.00066 1.4E-08 67.0 6.7 24 10-33 2-25 (352)
365 PF14516 AAA_35: AAA-like doma 97.2 0.031 6.8E-07 54.6 18.3 42 311-357 193-234 (331)
366 PF01583 APS_kinase: Adenylyls 97.2 0.0012 2.5E-08 57.0 7.2 70 9-79 2-80 (156)
367 cd00983 recA RecA is a bacter 97.2 0.00093 2E-08 64.6 7.3 79 5-87 51-148 (325)
368 TIGR02012 tigrfam_recA protein 97.2 0.00064 1.4E-08 65.7 6.2 83 5-87 51-148 (321)
369 TIGR02858 spore_III_AA stage I 97.2 0.0004 8.8E-09 65.7 4.7 26 10-35 112-137 (270)
370 cd03283 ABC_MutS-like MutS-lik 97.2 0.001 2.2E-08 60.1 7.1 25 9-33 25-49 (199)
371 PRK13894 conjugal transfer ATP 97.2 0.00064 1.4E-08 65.9 6.1 73 8-83 147-230 (319)
372 TIGR02688 conserved hypothetic 97.2 0.00058 1.3E-08 67.7 5.7 64 9-86 209-274 (449)
373 TIGR02782 TrbB_P P-type conjug 97.2 0.00046 9.9E-09 66.4 4.9 73 8-83 131-215 (299)
374 COG3283 TyrR Transcriptional r 97.2 0.0046 1E-07 59.6 11.4 88 277-370 334-432 (511)
375 PF13086 AAA_11: AAA domain; P 97.2 0.00038 8.2E-09 63.7 3.9 24 10-33 17-41 (236)
376 PRK05541 adenylylsulfate kinas 97.1 0.0004 8.7E-09 61.3 3.8 27 8-34 6-32 (176)
377 PRK01184 hypothetical protein; 97.1 0.00043 9.4E-09 61.5 4.0 33 11-48 3-35 (184)
378 PLN02199 shikimate kinase 97.1 0.00053 1.2E-08 65.0 4.7 36 7-44 100-135 (303)
379 PHA02774 E1; Provisional 97.1 0.00078 1.7E-08 69.2 6.2 31 5-35 430-460 (613)
380 TIGR02788 VirB11 P-type DNA tr 97.1 0.00075 1.6E-08 65.3 5.9 73 8-83 143-229 (308)
381 PF13479 AAA_24: AAA domain 97.1 0.00073 1.6E-08 61.8 5.5 70 9-84 3-80 (213)
382 PRK12608 transcription termina 97.1 0.0012 2.5E-08 64.9 7.2 27 9-35 133-159 (380)
383 PF06309 Torsin: Torsin; Inte 97.1 0.00045 9.8E-09 57.1 3.7 22 12-33 56-77 (127)
384 PF07693 KAP_NTPase: KAP famil 97.1 0.071 1.5E-06 51.7 19.7 87 241-334 172-265 (325)
385 PRK04182 cytidylate kinase; Pr 97.1 0.00049 1.1E-08 60.6 4.0 29 11-41 2-30 (180)
386 PRK08154 anaerobic benzoate ca 97.1 0.00052 1.1E-08 66.4 4.5 35 7-43 131-165 (309)
387 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0014 3E-08 56.7 6.6 74 7-83 23-109 (157)
388 cd03216 ABC_Carb_Monos_I This 97.1 0.0013 2.8E-08 57.4 6.5 28 7-34 24-51 (163)
389 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.00093 2E-08 61.1 5.8 22 10-31 30-51 (213)
390 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.001 2.2E-08 56.8 5.7 28 7-34 24-51 (144)
391 PF13521 AAA_28: AAA domain; P 97.1 0.00047 1E-08 60.1 3.5 30 12-44 2-31 (163)
392 cd01129 PulE-GspE PulE/GspE Th 97.1 0.00099 2.1E-08 63.0 5.9 73 9-84 80-161 (264)
393 PRK08233 hypothetical protein; 97.1 0.00052 1.1E-08 60.6 3.8 33 10-43 4-36 (182)
394 PF13191 AAA_16: AAA ATPase do 97.1 0.0004 8.8E-09 61.3 3.0 39 8-46 23-62 (185)
395 PF03266 NTPase_1: NTPase; In 97.1 0.00049 1.1E-08 60.4 3.4 23 11-33 1-23 (168)
396 COG4619 ABC-type uncharacteriz 97.0 0.0014 3E-08 56.7 5.9 41 6-46 26-66 (223)
397 PRK10078 ribose 1,5-bisphospho 97.0 0.00063 1.4E-08 60.7 4.1 27 9-35 2-28 (186)
398 TIGR02322 phosphon_PhnN phosph 97.0 0.00056 1.2E-08 60.5 3.7 26 10-35 2-27 (179)
399 KOG1051|consensus 97.0 0.0016 3.4E-08 70.3 7.6 131 10-172 209-352 (898)
400 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0016 3.5E-08 60.0 6.7 41 4-44 15-56 (229)
401 COG0529 CysC Adenylylsulfate k 97.0 0.0029 6.2E-08 55.2 7.4 58 9-66 23-89 (197)
402 PRK00889 adenylylsulfate kinas 97.0 0.0007 1.5E-08 59.7 3.8 28 7-34 2-29 (175)
403 TIGR02173 cyt_kin_arch cytidyl 97.0 0.00074 1.6E-08 59.0 4.0 29 11-41 2-30 (171)
404 COG2805 PilT Tfp pilus assembl 97.0 0.0023 5.1E-08 60.3 7.3 72 10-84 126-210 (353)
405 PRK12339 2-phosphoglycerate ki 97.0 0.00094 2E-08 60.2 4.5 27 9-35 3-29 (197)
406 PRK06696 uridine kinase; Valid 97.0 0.00086 1.9E-08 61.7 4.3 41 9-49 22-63 (223)
407 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.001 2.3E-08 61.8 4.8 43 3-45 15-58 (237)
408 PRK12723 flagellar biosynthesi 96.9 0.0024 5.3E-08 63.4 7.6 37 9-45 174-217 (388)
409 TIGR03499 FlhF flagellar biosy 96.9 0.0017 3.8E-08 61.9 6.3 36 9-44 194-234 (282)
410 CHL00206 ycf2 Ycf2; Provisiona 96.9 0.0076 1.7E-07 69.3 12.1 134 240-388 1731-1875(2281)
411 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0029 6.2E-08 61.7 7.9 36 9-46 162-197 (325)
412 PRK09825 idnK D-gluconate kina 96.9 0.00091 2E-08 59.2 4.0 36 8-47 2-37 (176)
413 cd03247 ABCC_cytochrome_bd The 96.9 0.003 6.5E-08 55.9 7.3 28 7-34 26-53 (178)
414 COG1067 LonB Predicted ATP-dep 96.9 0.0047 1E-07 65.0 9.7 134 238-389 222-398 (647)
415 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0024 5.2E-08 56.6 6.5 73 8-83 24-100 (177)
416 PRK13975 thymidylate kinase; P 96.9 0.0015 3.3E-08 58.5 5.4 26 10-35 3-28 (196)
417 COG1119 ModF ABC-type molybden 96.9 0.0075 1.6E-07 55.4 9.6 29 6-34 54-82 (257)
418 PLN02165 adenylate isopentenyl 96.9 0.0012 2.6E-08 63.9 4.6 34 9-44 43-76 (334)
419 PRK00300 gmk guanylate kinase; 96.9 0.001 2.2E-08 60.2 4.0 27 8-34 4-30 (205)
420 KOG0482|consensus 96.9 0.021 4.5E-07 57.4 13.2 95 302-397 507-645 (721)
421 PRK10733 hflB ATP-dependent me 96.9 0.0079 1.7E-07 64.1 11.1 135 240-388 243-390 (644)
422 COG4650 RtcR Sigma54-dependent 96.8 0.0013 2.8E-08 61.6 4.4 78 9-86 208-296 (531)
423 cd03228 ABCC_MRP_Like The MRP 96.8 0.004 8.7E-08 54.7 7.4 28 7-34 26-53 (171)
424 TIGR00416 sms DNA repair prote 96.8 0.0028 6E-08 64.6 7.2 79 5-86 90-184 (454)
425 PRK12338 hypothetical protein; 96.8 0.0011 2.4E-08 63.8 4.0 27 9-35 4-30 (319)
426 PF00448 SRP54: SRP54-type pro 96.8 0.0016 3.6E-08 58.6 4.9 36 9-44 1-39 (196)
427 PF05729 NACHT: NACHT domain 96.8 0.001 2.2E-08 57.4 3.4 24 11-34 2-25 (166)
428 PRK05480 uridine/cytidine kina 96.8 0.0016 3.6E-08 59.1 4.9 26 9-34 6-31 (209)
429 PF01443 Viral_helicase1: Vira 96.8 0.00049 1.1E-08 63.4 1.4 22 12-33 1-22 (234)
430 PF05872 DUF853: Bacterial pro 96.8 0.016 3.5E-07 57.8 11.8 88 243-351 257-353 (502)
431 PF08303 tRNA_lig_kinase: tRNA 96.8 0.0024 5.1E-08 55.1 5.3 56 15-79 5-61 (168)
432 PF00485 PRK: Phosphoribulokin 96.8 0.001 2.3E-08 59.7 3.3 24 12-35 2-25 (194)
433 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0016 3.5E-08 58.8 4.3 42 8-50 14-55 (199)
434 TIGR00041 DTMP_kinase thymidyl 96.7 0.0023 4.9E-08 57.3 5.3 26 9-34 3-28 (195)
435 COG0467 RAD55 RecA-superfamily 96.7 0.002 4.4E-08 60.7 5.1 41 5-45 19-60 (260)
436 TIGR01448 recD_rel helicase, p 96.7 0.0068 1.5E-07 65.4 9.7 76 9-84 338-428 (720)
437 cd03246 ABCC_Protease_Secretio 96.7 0.0051 1.1E-07 54.1 7.4 26 8-33 27-52 (173)
438 PF06745 KaiC: KaiC; InterPro 96.7 0.0016 3.4E-08 60.0 4.2 39 4-44 14-56 (226)
439 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0013 2.8E-08 62.1 3.6 29 5-33 32-60 (259)
440 PRK05973 replicative DNA helic 96.7 0.0021 4.6E-08 59.5 4.9 39 4-44 59-100 (237)
441 TIGR02524 dot_icm_DotB Dot/Icm 96.7 0.0027 6E-08 62.6 6.1 26 8-33 133-158 (358)
442 KOG0478|consensus 96.7 0.063 1.4E-06 55.9 15.8 139 243-389 528-723 (804)
443 PRK07452 DNA polymerase III su 96.7 0.01 2.3E-07 57.7 10.1 128 243-388 63-197 (326)
444 PRK04328 hypothetical protein; 96.7 0.002 4.4E-08 60.3 4.9 43 4-46 18-61 (249)
445 TIGR03263 guanyl_kin guanylate 96.7 0.0011 2.5E-08 58.5 3.0 25 10-34 2-26 (180)
446 COG2804 PulE Type II secretory 96.7 0.0029 6.2E-08 63.9 6.1 74 8-84 257-339 (500)
447 TIGR00455 apsK adenylylsulfate 96.7 0.0074 1.6E-07 53.6 8.2 42 7-48 16-58 (184)
448 KOG0480|consensus 96.7 0.054 1.2E-06 56.0 15.0 138 243-389 444-642 (764)
449 TIGR00235 udk uridine kinase. 96.7 0.0015 3.3E-08 59.3 3.7 26 9-34 6-31 (207)
450 cd02024 NRK1 Nicotinamide ribo 96.7 0.0018 4E-08 57.8 4.0 31 12-43 2-32 (187)
451 PRK10536 hypothetical protein; 96.7 0.0023 5E-08 59.7 4.6 37 10-46 75-113 (262)
452 PRK09354 recA recombinase A; P 96.7 0.0054 1.2E-07 59.9 7.4 80 5-86 56-152 (349)
453 PRK04841 transcriptional regul 96.7 0.06 1.3E-06 59.8 16.7 99 242-363 122-225 (903)
454 PRK00091 miaA tRNA delta(2)-is 96.7 0.0021 4.6E-08 61.9 4.6 35 9-45 4-38 (307)
455 TIGR01663 PNK-3'Pase polynucle 96.6 0.0058 1.3E-07 63.1 7.9 28 8-35 368-395 (526)
456 PRK14738 gmk guanylate kinase; 96.6 0.0017 3.8E-08 58.9 3.7 25 8-32 12-36 (206)
457 PLN02840 tRNA dimethylallyltra 96.6 0.0024 5.1E-08 63.8 4.9 38 9-48 21-58 (421)
458 cd01918 HprK_C HprK/P, the bif 96.6 0.0016 3.4E-08 55.8 3.1 24 9-32 14-37 (149)
459 PRK14737 gmk guanylate kinase; 96.6 0.0017 3.8E-08 58.0 3.5 27 8-34 3-29 (186)
460 PRK04220 2-phosphoglycerate ki 96.6 0.0026 5.6E-08 60.7 4.6 27 9-35 92-118 (301)
461 cd02023 UMPK Uridine monophosp 96.6 0.0017 3.8E-08 58.4 3.3 23 12-34 2-24 (198)
462 cd00071 GMPK Guanosine monopho 96.6 0.0018 3.8E-08 54.9 3.1 24 12-35 2-25 (137)
463 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0019 4.2E-08 52.0 3.1 23 8-30 14-36 (107)
464 PF02367 UPF0079: Uncharacteri 96.6 0.0023 5E-08 52.9 3.6 29 7-35 13-41 (123)
465 cd03243 ABC_MutS_homologs The 96.6 0.0054 1.2E-07 55.5 6.3 21 10-30 30-50 (202)
466 cd02028 UMPK_like Uridine mono 96.5 0.0027 5.9E-08 56.3 4.3 23 12-34 2-24 (179)
467 PRK12724 flagellar biosynthesi 96.5 0.0084 1.8E-07 59.8 8.0 26 8-33 222-247 (432)
468 PRK06761 hypothetical protein; 96.5 0.0029 6.4E-08 60.0 4.6 26 10-35 4-29 (282)
469 PRK11545 gntK gluconate kinase 96.5 0.0019 4.2E-08 56.3 3.2 21 15-35 1-21 (163)
470 TIGR02868 CydC thiol reductant 96.5 0.028 6E-07 58.6 12.2 41 7-47 359-399 (529)
471 PRK14021 bifunctional shikimat 96.5 0.0025 5.4E-08 66.5 4.3 33 10-44 7-39 (542)
472 cd00984 DnaB_C DnaB helicase C 96.5 0.0038 8.2E-08 58.0 5.0 38 5-44 9-50 (242)
473 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.007 1.5E-07 54.6 6.6 21 10-30 29-49 (200)
474 KOG2170|consensus 96.5 0.003 6.4E-08 59.5 4.1 46 303-350 273-318 (344)
475 KOG3354|consensus 96.5 0.0026 5.6E-08 54.1 3.4 30 10-41 13-42 (191)
476 PRK08356 hypothetical protein; 96.5 0.0033 7.2E-08 56.5 4.4 24 10-34 6-29 (195)
477 PRK03846 adenylylsulfate kinas 96.5 0.0041 8.8E-08 56.1 5.0 40 8-47 23-63 (198)
478 PRK10436 hypothetical protein; 96.5 0.0049 1.1E-07 62.7 6.0 74 8-84 217-299 (462)
479 cd01672 TMPK Thymidine monopho 96.5 0.004 8.7E-08 55.6 4.8 22 12-33 3-24 (200)
480 PF00625 Guanylate_kin: Guanyl 96.4 0.0039 8.5E-08 55.4 4.7 27 9-35 2-28 (183)
481 cd02022 DPCK Dephospho-coenzym 96.4 0.0034 7.3E-08 55.7 4.2 27 12-41 2-28 (179)
482 PRK13951 bifunctional shikimat 96.4 0.0031 6.7E-08 64.8 4.4 32 11-44 2-33 (488)
483 PF04665 Pox_A32: Poxvirus A32 96.4 0.0097 2.1E-07 55.1 7.2 35 9-43 13-47 (241)
484 PRK14730 coaE dephospho-CoA ki 96.4 0.0066 1.4E-07 54.6 6.1 35 11-49 3-37 (195)
485 TIGR03819 heli_sec_ATPase heli 96.4 0.0058 1.3E-07 59.8 6.1 72 9-83 178-264 (340)
486 cd03115 SRP The signal recogni 96.4 0.0026 5.6E-08 55.9 3.3 23 11-33 2-24 (173)
487 TIGR00174 miaA tRNA isopenteny 96.4 0.0033 7.2E-08 59.9 4.2 35 12-48 2-36 (287)
488 PRK14722 flhF flagellar biosyn 96.4 0.0027 5.8E-08 62.7 3.6 25 9-33 137-161 (374)
489 cd00544 CobU Adenosylcobinamid 96.4 0.0049 1.1E-07 54.2 4.9 35 12-48 2-36 (169)
490 PF13555 AAA_29: P-loop contai 96.4 0.0039 8.4E-08 44.9 3.5 24 11-34 25-48 (62)
491 KOG2543|consensus 96.4 0.046 1E-06 53.3 11.7 39 9-49 30-68 (438)
492 PTZ00301 uridine kinase; Provi 96.4 0.0027 5.8E-08 57.8 3.2 24 11-34 5-28 (210)
493 TIGR03575 selen_PSTK_euk L-ser 96.4 0.0056 1.2E-07 59.7 5.6 37 12-48 2-40 (340)
494 COG1066 Sms Predicted ATP-depe 96.4 0.014 2.9E-07 57.5 8.1 82 5-89 89-185 (456)
495 COG0324 MiaA tRNA delta(2)-iso 96.4 0.0043 9.4E-08 59.3 4.7 38 9-48 3-40 (308)
496 PF05970 PIF1: PIF1-like helic 96.4 0.0043 9.3E-08 61.5 4.9 29 7-35 20-48 (364)
497 TIGR00017 cmk cytidylate kinas 96.4 0.0041 8.9E-08 57.0 4.4 26 10-35 3-28 (217)
498 TIGR02538 type_IV_pilB type IV 96.4 0.0058 1.3E-07 64.1 6.0 73 9-84 316-397 (564)
499 COG1855 ATPase (PilT family) [ 96.3 0.0026 5.6E-08 62.9 3.1 26 9-34 263-288 (604)
500 PLN02842 nucleotide kinase 96.3 0.0042 9.1E-08 63.4 4.7 35 13-51 1-35 (505)
No 1
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=100.00 E-value=6.3e-80 Score=572.28 Aligned_cols=393 Identities=55% Similarity=0.893 Sum_probs=380.2
Q ss_pred CccccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecc
Q psy2778 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 1 ~i~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
||++|++.+++||+.||||||||++|-+||++||.++||+.+++|+++|.++.++|.|.++|+++.+++.++-.-++..|
T Consensus 57 mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvrikE~reV~EGe 136 (450)
T COG1224 57 MIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGE 136 (450)
T ss_pred HHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHhhceEeeeeeEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccc-cc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAA-EF 159 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~-rf 159 (409)
+.++...+..+..+++.+.+....+.|+|.|+++.+++++++.+++.+.++..||+++|.+.+.++.++||.+.+.+ .|
T Consensus 137 V~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~ 216 (450)
T COG1224 137 VVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSKARAREDF 216 (450)
T ss_pred EEEEEEeeccCCCCCccccccceEEEEEecccceEeecCHHHHHHHHHhCcccCCEEEEEccccEEEEeecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998886 88
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhcccc
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAE 239 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 239 (409)
|.+.+.++|+|++++++++++.+.+++||||..++++.| +..++.....++++++|+.+|+.+++|+++|+++
T Consensus 217 dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G-------~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAE 289 (450)
T COG1224 217 DLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQG-------ILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAE 289 (450)
T ss_pred cccceEEEECCCCceeeeEEEEEEEEehhhhhhhccccc-------hHhhhcCCcccCCHHHHHHHHHHHHHHHhcCcEE
Confidence 888999999999999999999999999999999999997 3335566677899999999999999999999999
Q ss_pred ccCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCC
Q psy2778 240 LVPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY 319 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~ 319 (409)
++||||||||+||||.+ ||+||+|+||+.++|++|+|||++.++++|| ++..|||+|.||+||+++|++.||
T Consensus 290 lVpGVLFIDEvHmLDIE-------~FsFlnrAlEse~aPIii~AtNRG~~kiRGT-d~~sPhGIP~DlLDRllII~t~py 361 (450)
T COG1224 290 LVPGVLFIDEVHMLDIE-------CFSFLNRALESELAPIIILATNRGMTKIRGT-DIESPHGIPLDLLDRLLIISTRPY 361 (450)
T ss_pred eecceEEEechhhhhHH-------HHHHHHHHhhcccCcEEEEEcCCceeeeccc-CCcCCCCCCHhhhhheeEEecCCC
Confidence 99999999999999999 9999999999999999999999999999999 699999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHHH
Q psy2778 320 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARI 399 (409)
Q Consensus 320 ~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~~ 399 (409)
+.+|+++|++.+|+++++.++++|++++++++..+|+|||++||..|...|+.+|+..|..+||+++..+|+|.+||++|
T Consensus 362 ~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~krSv~~ 441 (450)
T COG1224 362 SREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVKRSVEY 441 (450)
T ss_pred CHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhc
Q psy2778 400 LTENKDKFM 408 (409)
Q Consensus 400 ~~~~~~~~~ 408 (409)
.+.+.+.|+
T Consensus 442 v~~~~~~~~ 450 (450)
T COG1224 442 VEKYEGLLL 450 (450)
T ss_pred HHHHHhhcC
Confidence 999988774
No 2
>KOG1942|consensus
Probab=100.00 E-value=3.7e-79 Score=553.59 Aligned_cols=401 Identities=79% Similarity=1.213 Sum_probs=394.9
Q ss_pred CccccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecc
Q psy2778 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 1 ~i~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
||++.+++++.+||.||||||||++|-++++++|.++||..+.+|+++|.++.++|.|.++|+++.+++.++-.-++..|
T Consensus 56 lik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvLmenfRRaIglRikEtKeVYEGE 135 (456)
T KOG1942|consen 56 LIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVLMENFRRAIGLRIKETKEVYEGE 135 (456)
T ss_pred HHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhcce
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+-.+.+....+.+++++++++.+++.|+|.++.+++++.|+++++++++.+..||+++|.+.+..+++.||++..+..||
T Consensus 136 VtEl~p~e~enp~ggygKtIshv~i~LKtaKgtKqLkLdPsiyesi~kerv~~GDViYIEaNsGavKrvGRsda~ateFD 215 (456)
T KOG1942|consen 136 VTELTPVEAENPLGGYGKTISHVVIGLKTAKGTKQLKLDPSIYESIQKERVEVGDVIYIEANSGAVKRVGRSDAYATEFD 215 (456)
T ss_pred eeEeccccccCCCCccCceeeeeEEEEeecCCcceeccChHHHHHHHHhhhccCcEEEEEeccchhhcccccccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhccccc
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAEL 240 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 240 (409)
.+.+.|+|+|.++++++++++|++++||+|..+++++||.|+.+++.++++-+..++++.+|..+|+++++|+++|.+++
T Consensus 216 LEaeeyVPlPKGeVhKkKeivQdVtLhDLD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~eiNkvVn~Yid~GvAEl 295 (456)
T KOG1942|consen 216 LEAEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAEL 295 (456)
T ss_pred cccceeecCCccchhhhHHHhhhcchhhcccccCCCCccchHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 241 VPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
+||||||||+||||.+ ||.||+|++|++.+|++|||+|++.+.++|+++...|||+|+++++|+++|+..+|+
T Consensus 296 vPGVLFIDEVhMLDiE-------cFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIE-------CFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred cCcceEeeehhhhhhH-------HHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 9999999999999999 999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARIL 400 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~~~ 400 (409)
++++.+|++.+++.+++.+++++++.++.++.++++|||++||..+...|+..|++.|..+||.++..+|+|.+||.|.+
T Consensus 369 ~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~s~k~l 448 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKRSAKIL 448 (456)
T ss_pred HHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhc
Q psy2778 401 TENKDKFM 408 (409)
Q Consensus 401 ~~~~~~~~ 408 (409)
++.++.|+
T Consensus 449 ~~~~~k~~ 456 (456)
T KOG1942|consen 449 EESQNKYL 456 (456)
T ss_pred HhhhccCC
Confidence 99999986
No 3
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=100.00 E-value=7.6e-74 Score=541.10 Aligned_cols=356 Identities=63% Similarity=1.033 Sum_probs=289.3
Q ss_pred CccccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecc
Q psy2778 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 1 ~i~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
||++|++.++++||.||||||||++|-++|++||.++||+.+++|+++|.++.++|.|.++||++.+++.++..-++..|
T Consensus 42 mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa~RraIGvrIkE~~eV~EGe 121 (398)
T PF06068_consen 42 MIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQAFRRAIGVRIKEEKEVYEGE 121 (398)
T ss_dssp HHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHHHHCSEEEEEEEEECEEEEE
T ss_pred HHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHHHHHhheEEEEEEEEEEEEE
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+..|.....+...+ +.+......++|+|.++++.|+++++++++++++++..||+++|.+.++.+.++||.+.+...||
T Consensus 122 Vvei~~~~~~~~~~-~~~~~~~~~i~LkT~~~~~~l~l~~~i~~~l~kekV~~GDVI~Id~~tG~V~k~Grs~~~~~~~D 200 (398)
T PF06068_consen 122 VVEIKIEEAENPLN-YGKTIKHGKITLKTTDMEKTLKLGPKIYEQLQKEKVRVGDVIYIDKNTGRVKKVGRSDSYAKDYD 200 (398)
T ss_dssp EEEEEE---E-TTS--SSSS-EEEEEEEETTCEEEEEE-CHHHHHHHHTT--TTCEEEEETTTTEEEEEEEECCCS-TTS
T ss_pred EEEEEEeeccCccc-cCCcceEEEEEEEEcCCceEecCCHHHHHHHHHhCCccCcEEEEECCCCeEEEEecccchhhccc
Confidence 99998876666555 67777888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhccccc
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAEL 240 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 240 (409)
.+.+.++|+|+|++++|+++.+.+|+||||.++++++ ++.+++.+.+.++..|+++++|+.+|+.+++|++++++++
T Consensus 201 ~~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q---~~lslf~~~~~~~~~EI~~elR~eInk~V~~wieegkAel 277 (398)
T PF06068_consen 201 LEATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQ---DFLSLFGQLFKGDTGEITDELREEINKKVNKWIEEGKAEL 277 (398)
T ss_dssp ECCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC------------------------HHHHHHHHHHHHHHHHCTSEEE
T ss_pred cccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccc---cHHHHHHhhcCCCcccchHHHHHHHhHHHHHHHhcCceEE
Confidence 9988999999999999999999999999999999998 6888888888999999999999999999999999999999
Q ss_pred cCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 241 VPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
+||||||||+||||.+ ||+||+|+||.+++|++|+|||++.+.++|| ++..|||+|.+|+|||+++++.||+
T Consensus 278 vpGVLFIDEvHmLDiE-------cFsfLnralEs~~sPiiIlATNRg~~~irGt-~~~sphGiP~DlLDRllII~t~py~ 349 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIE-------CFSFLNRALESELSPIIILATNRGITKIRGT-DIISPHGIPLDLLDRLLIIRTKPYS 349 (398)
T ss_dssp EE-EEEEESGGGSBHH-------HHHHHHHHHTSTT--EEEEEES-SEEE-BTT-S-EEETT--HHHHTTEEEEEE----
T ss_pred ecceEEecchhhccHH-------HHHHHHHHhcCCCCcEEEEecCceeeeccCc-cCcCCCCCCcchHhhcEEEECCCCC
Confidence 9999999999999999 9999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAAL 368 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~ 368 (409)
.+|+.+|++.+|+++++++++++++++++++..+|+|||++||..|..
T Consensus 350 ~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~i 397 (398)
T PF06068_consen 350 EEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPASI 397 (398)
T ss_dssp HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999999998753
No 4
>KOG2680|consensus
Probab=100.00 E-value=1.5e-72 Score=511.85 Aligned_cols=389 Identities=46% Similarity=0.749 Sum_probs=367.6
Q ss_pred CccccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecc
Q psy2778 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 1 ~i~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
||+.|+..++.+|+.||||||||++|-.+|+.+|.+.||..++++++++-++.++|.|.++|+++.+++.++..-++..|
T Consensus 58 mi~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRksiGvrIKEetevIEGE 137 (454)
T KOG2680|consen 58 MIREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRKSIGVRIKEETEVIEGE 137 (454)
T ss_pred HHHcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHHhhceEeeheeeeecce
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+..+.-.|.-+. ....+. .++++|.|+++.|.++.+|++.+.++.+..||++.|..++.++.++|+.+.+.++||
T Consensus 138 VVeiqidRp~tg---~g~k~G--Klt~kTtdMEt~ydlG~Kmi~~l~KeKV~aGDVI~idka~GkitKlGrSf~rsrdyD 212 (454)
T KOG2680|consen 138 VVEIQIDRPATG---MGSKVG--KLTLKTTDMETIYDLGMKMIESLTKEKVQAGDVITIDKASGKITKLGRSFTRSRDYD 212 (454)
T ss_pred EEEEEeeccccC---cCcccc--eeEEeecchhhHHHHHHHHHHHhhHhhccCCceEEEEcccceeehhhccccccccCC
Confidence 999865544332 222222 357899999999999999999999999999999999999999999999999999999
Q ss_pred cc--ceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhccc
Q psy2778 161 LE--AEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIA 238 (409)
Q Consensus 161 ~~--~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 238 (409)
.. -..++++|++++++|++..+.+++|++|.++++++| ..++++++.+++..++|+++|+++.+|.++|++
T Consensus 213 amG~~tkfVqCPeGElqkrkevvhtvsLHeIDViNSrtqG-------~lALFsGdTGEIr~EvRdqin~KV~eWreEGKA 285 (454)
T KOG2680|consen 213 AMGSQTKFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQG-------FLALFSGDTGEIRSEVRDQINTKVAEWREEGKA 285 (454)
T ss_pred ccCCccceecCCchhhhheeeeeEeeeecccccccccccc-------eEEEEeCCcccccHHHHHHHHHHHHHHHhcCCe
Confidence 87 467999999999999999999999999999999998 333778899999999999999999999999999
Q ss_pred cccCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCC
Q psy2778 239 ELVPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTP 318 (409)
Q Consensus 239 ~~~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~ 318 (409)
+++||||||||+||||.+ ||+|||+++|+..+|+++.|||++.+.++|| ++.+|||+|.+|++|+++|...|
T Consensus 286 eivpGVLFIDEvHMLDIE-------cFsFlNrAlE~d~~PiiimaTNrgit~iRGT-n~~SphGiP~D~lDR~lII~t~p 357 (454)
T KOG2680|consen 286 EIVPGVLFIDEVHMLDIE-------CFSFLNRALENDMAPIIIMATNRGITRIRGT-NYRSPHGIPIDLLDRMLIISTQP 357 (454)
T ss_pred eeccceEEEeeehhhhhH-------HHHHHHHHhhhccCcEEEEEcCCceEEeecC-CCCCCCCCcHHHhhhhheeeccc
Confidence 999999999999999999 9999999999999999999999999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHH
Q psy2778 319 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSAR 398 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~ 398 (409)
|+.+|+++||+.+|.++++.+++++++.+++++..+++|||++|+..+...+..+....++.+||++++.+|+|.+||.+
T Consensus 358 y~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs~~ 437 (454)
T KOG2680|consen 358 YTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRSMK 437 (454)
T ss_pred CcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999998777788999999999999999999999
Q ss_pred HHHHhhhhhcC
Q psy2778 399 ILTENKDKFMR 409 (409)
Q Consensus 399 ~~~~~~~~~~~ 409 (409)
|++++++.|+|
T Consensus 438 yl~E~~~~y~~ 448 (454)
T KOG2680|consen 438 YLTEYQSGYLF 448 (454)
T ss_pred HHHHhhhcccc
Confidence 99999999997
No 5
>KOG0733|consensus
Probab=100.00 E-value=1.6e-34 Score=284.74 Aligned_cols=313 Identities=25% Similarity=0.338 Sum_probs=231.2
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEV 81 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEi 81 (409)
..|..||+|+|||||||||||+||+|||.+++ +||+.+++.++.+.+.|++| +++++|++|.+ .+|||+|||||
T Consensus 217 ~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf~~isApeivSGvSGESEkkiRelF~~A~~---~aPcivFiDeI 291 (802)
T KOG0733|consen 217 SLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPFLSISAPEIVSGVSGESEKKIRELFDQAKS---NAPCIVFIDEI 291 (802)
T ss_pred hcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--CceEeecchhhhcccCcccHHHHHHHHHHHhc---cCCeEEEeecc
Confidence 45889999999999999999999999999999 59999999999999999999 99999999974 69999999999
Q ss_pred ccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccc
Q psy2778 82 TELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 82 d~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
|+|.++|..+...-..|.+.+++..|+...... ..|+.|+|+++||+++.++++++|+||||+
T Consensus 292 DAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~-----------------~~g~~VlVIgATnRPDslDpaLRRaGRFdr 354 (802)
T KOG0733|consen 292 DAITPKREEAQREMERRIVAQLLTSMDELSNEK-----------------TKGDPVLVIGATNRPDSLDPALRRAGRFDR 354 (802)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcccccc-----------------cCCCCeEEEecCCCCcccCHHHhccccccc
Confidence 999999987654445578888877776554322 245667777777899999999999999998
Q ss_pred cceeeccCCCccHHHHHHHHhhcCH----h---hHHHhhcCCCC--hHHHHHHHHHHHhhhhhh----------------
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTL----H---DLDMANAKPQG--GQDILSMVGQLIKSKKTE---------------- 216 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~----~---dl~~~a~~~~g--gadi~~l~~~~~~~~~~~---------------- 216 (409)
+|...+|.. -.|.+||+.+.. . |+..+|..|+| |||+.+||..+-......
T Consensus 355 EI~l~vP~e----~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~e 430 (802)
T KOG0733|consen 355 EICLGVPSE----TAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISE 430 (802)
T ss_pred eeeecCCch----HHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccc
Confidence 855555443 347777766533 2 68899999999 999999985432110000
Q ss_pred -------------hh-----------------------------------------------------------------
Q psy2778 217 -------------IT----------------------------------------------------------------- 218 (409)
Q Consensus 217 -------------~~----------------------------------------------------------------- 218 (409)
+.
T Consensus 431 d~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW 510 (802)
T KOG0733|consen 431 DSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTW 510 (802)
T ss_pred cccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCCh
Confidence 00
Q ss_pred ------HHHHHHHHH-------------------------------------------------------HHHHHHhhcc
Q psy2778 219 ------DKLRKEINK-------------------------------------------------------VVNKYIDQGI 237 (409)
Q Consensus 219 ------~~~~~~i~~-------------------------------------------------------~~~~~~~~~~ 237 (409)
+++|.+++. ..+.|+-+-.
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESE 590 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESE 590 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHH
Confidence 001111111 4555554311
Q ss_pred ----------ccccCCccccccccccccc---ccC-chhhhHHHHHHHh---cccCCceEEEecCcceeeecccccCCCC
Q psy2778 238 ----------AELVPGVLFIDEVHMLDLE---TFM-PHLETFTYLHRAL---ESAIAPIVIFATNRGRCLVRGTDDIISP 300 (409)
Q Consensus 238 ----------~~~~~gvl~ide~~~l~~~---~~~-~~~~~~~~L~~~~---e~~~~~~~i~~~~~~~~~~~~~~~~~~~ 300 (409)
-.-.|-|+|+||++.|-+. ..- -..+..+-|+..| |...+..||.|||++ +.+.|
T Consensus 591 rAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP--------DiIDp 662 (802)
T KOG0733|consen 591 RAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP--------DIIDP 662 (802)
T ss_pred HHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC--------cccch
Confidence 1246779999999987652 000 1133466666544 455778899999997 56677
Q ss_pred CCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhc
Q psy2778 301 HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIG 351 (409)
Q Consensus 301 ~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~I~~~s 351 (409)
.-+-+.-+++.+.+. .++.+|-.+||+...+..+.++++++ ++.|++..
T Consensus 663 AiLRPGRlDk~LyV~--lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVG--LPNAEERVAILKTITKNTKPPLSSDVDLDEIARNT 712 (802)
T ss_pred hhcCCCccCceeeec--CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcc
Confidence 778888888877665 46677889999999988778887554 78888775
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-35 Score=272.76 Aligned_cols=203 Identities=24% Similarity=0.338 Sum_probs=164.3
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHH-HHHHHHHHHhhhhcccceEEeccc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEV-LMENFRRAIGLRIKESKEVYEGEV 81 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~-l~~~f~~a~~~~~~~~~ii~iDEi 81 (409)
+-|..||+|||||||||||||.||+|+|+..++ .|+.+.+|++..+|+|+..+ ++++|+.|. .++|||||||||
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A--tFIrvvgSElVqKYiGEGaRlVRelF~lAr---ekaPsIIFiDEI 253 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA--TFIRVVGSELVQKYIGEGARLVRELFELAR---EKAPSIIFIDEI 253 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc--eEEEeccHHHHHHHhccchHHHHHHHHHHh---hcCCeEEEEech
Confidence 347889999999999999999999999999997 99999999999999999995 599999995 689999999999
Q ss_pred ccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccc
Q psy2778 82 TELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 82 d~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
|+|..+|.+...++.....+.++--|.++||.. ..+++-+|+||| +++-++|+..||||||+
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD-----------------~~~nvKVI~ATN-R~D~LDPALLRPGR~DR 315 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD-----------------PRGNVKVIMATN-RPDILDPALLRPGRFDR 315 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCC-----------------CCCCeEEEEecC-CccccChhhcCCCcccc
Confidence 999999998887766555555544444444332 245666666665 99999999999999996
Q ss_pred cceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHH----HHhhhhhhhh-HHHHHHHHH
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQ----LIKSKKTEIT-DKLRKEINK 227 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~----~~~~~~~~~~-~~~~~~i~~ 227 (409)
.|.+|-|+...|.+|++.++.. |++.++..++| |||++++|.. +++.++..++ +.+.+.+.+
T Consensus 316 ----kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 316 ----KIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred ----eeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 5556667888899999987653 68899999999 9999999965 4455554444 467777777
Q ss_pred HHHHH
Q psy2778 228 VVNKY 232 (409)
Q Consensus 228 ~~~~~ 232 (409)
+++..
T Consensus 392 V~~~~ 396 (406)
T COG1222 392 VVKKK 396 (406)
T ss_pred HHhcc
Confidence 66644
No 7
>KOG0730|consensus
Probab=100.00 E-value=5.2e-33 Score=277.60 Aligned_cols=181 Identities=20% Similarity=0.328 Sum_probs=152.8
Q ss_pred ccccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecc
Q psy2778 2 IKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 2 i~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
.+-|..||+|||||||||||||++|+|+|++.+. +|+.+++.+++++|+|++| .++++|++|. ..+|||||+||
T Consensus 461 ~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR---~~aP~IiFfDE 535 (693)
T KOG0730|consen 461 ARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--NFLSVKGPELFSKYVGESERAIREVFRKAR---QVAPCIIFFDE 535 (693)
T ss_pred HHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC--CeeeccCHHHHHHhcCchHHHHHHHHHHHh---hcCCeEEehhh
Confidence 3457788999999999999999999999999996 9999999999999999999 7999999996 56899999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+|++.+.|++...+...|.+++++..|+ |+.....|+|+|+||+++.++++..+|||||
T Consensus 536 iDsi~~~R~g~~~~v~~RVlsqLLtEmD---------------------G~e~~k~V~ViAATNRpd~ID~ALlRPGRlD 594 (693)
T KOG0730|consen 536 IDALAGSRGGSSSGVTDRVLSQLLTEMD---------------------GLEALKNVLVIAATNRPDMIDPALLRPGRLD 594 (693)
T ss_pred HHhHhhccCCCccchHHHHHHHHHHHcc---------------------cccccCcEEEEeccCChhhcCHHHcCCcccc
Confidence 9999999986666666778888766664 4445555666666679999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
+ .+.+|.||...|.+|++..+.. |++.+|..|+| |||+.++|+.+-..
T Consensus 595 ~----iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 595 R----IIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred e----eEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 5 4445555888899999876432 78999999999 99999999876543
No 8
>KOG0733|consensus
Probab=99.98 E-value=2.3e-32 Score=269.47 Aligned_cols=176 Identities=23% Similarity=0.389 Sum_probs=154.3
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
-|..+|.|||||||||||||.+|+|+|++.+. .|+.+.|.+|+++|+|++| .++++|.+|. ..+|||||+||+|
T Consensus 540 lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~--NFisVKGPELlNkYVGESErAVR~vFqRAR---~saPCVIFFDEiD 614 (802)
T KOG0733|consen 540 LGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA--NFISVKGPELLNKYVGESERAVRQVFQRAR---ASAPCVIFFDEID 614 (802)
T ss_pred hCCCCCCceEEeCCCCccHHHHHHHHhhhccC--ceEeecCHHHHHHHhhhHHHHHHHHHHHhh---cCCCeEEEecchh
Confidence 37778999999999999999999999999996 9999999999999999999 8999999995 5799999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
+++++|++...+...|.+++++..|+ |++....|+|+|+||+++.++++..|+||||..
T Consensus 615 aL~p~R~~~~s~~s~RvvNqLLtElD---------------------Gl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~ 673 (802)
T KOG0733|consen 615 ALVPRRSDEGSSVSSRVVNQLLTELD---------------------GLEERRGVYVIAATNRPDIIDPAILRPGRLDKL 673 (802)
T ss_pred hcCcccCCCCchhHHHHHHHHHHHhc---------------------ccccccceEEEeecCCCcccchhhcCCCccCce
Confidence 99999999998888999999988775 445556788888888999999999999999964
Q ss_pred ceeeccCCCccHHHHHHHHhhcCHh---------hHHHhhcCCC--C--hHHHHHHHHHH
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTLH---------DLDMANAKPQ--G--GQDILSMVGQL 209 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~~---------dl~~~a~~~~--g--gadi~~l~~~~ 209 (409)
.||++| +...|..|++.++.. |++.+|..+. | |||+..||+.+
T Consensus 674 --LyV~lP--n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 674 --LYVGLP--NAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREA 729 (802)
T ss_pred --eeecCC--CHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHH
Confidence 566666 556688899888762 6889988776 8 99999999654
No 9
>KOG0730|consensus
Probab=99.97 E-value=9e-30 Score=254.48 Aligned_cols=339 Identities=23% Similarity=0.286 Sum_probs=250.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+++|+|||||||||.+++++|++.++ .++.++++++.+++.|+++ +|+++|+.+... ..|+++||||+|
T Consensus 213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a--~~~~i~~peli~k~~gEte~~LR~~f~~a~k~--~~psii~IdEld 288 (693)
T KOG0730|consen 213 IGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA--FLFLINGPELISKFPGETESNLRKAFAEALKF--QVPSIIFIDELD 288 (693)
T ss_pred cCCCCCCCccccCCCCCChHHHHHHHHHHhCc--eeEecccHHHHHhcccchHHHHHHHHHHHhcc--CCCeeEeHHhHh
Confidence 47788999999999999999999999999996 9999999999999999999 899999999742 239999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
+++|+|..... -..+.+++++..++.+ ....-+++++++++++.++++.+| ||||.+
T Consensus 289 ~l~p~r~~~~~-~e~Rv~sqlltL~dg~---------------------~~~~~vivl~atnrp~sld~alRR-gRfd~e 345 (693)
T KOG0730|consen 289 ALCPKREGADD-VESRVVSQLLTLLDGL---------------------KPDAKVIVLAATNRPDSLDPALRR-GRFDRE 345 (693)
T ss_pred hhCCcccccch-HHHHHHHHHHHHHhhC---------------------cCcCcEEEEEecCCccccChhhhc-CCCcce
Confidence 99999887654 3445555554444333 333445555666799999999999 999998
Q ss_pred ceeeccCCCccHHHHHHHHhhcC-------HhhHHHhhcCCCC--hHHHHHHHHHHHhhhhhh---hh------------
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVT-------LHDLDMANAKPQG--GQDILSMVGQLIKSKKTE---IT------------ 218 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~-------~~dl~~~a~~~~g--gadi~~l~~~~~~~~~~~---~~------------ 218 (409)
+++.+|...+ |.++++.++ ..++..+|..++| |+|+.++|..+......+ ..
T Consensus 346 v~IgiP~~~~----RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~ 421 (693)
T KOG0730|consen 346 VEIGIPGSDG----RLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRPSAL 421 (693)
T ss_pred eeecCCCchh----HHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhh
Confidence 7766666544 666665432 2368899999999 999999996654332222 00
Q ss_pred ------------------HHHHHHHHH-----------------------------------------------------
Q psy2778 219 ------------------DKLRKEINK----------------------------------------------------- 227 (409)
Q Consensus 219 ------------------~~~~~~i~~----------------------------------------------------- 227 (409)
+++...++.
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 112222221
Q ss_pred --HHHHHHhhcc----------ccccCCccccccccccccc--ccCc--hhhhHHHHHHHhc---ccCCceEEEecCcce
Q psy2778 228 --VVNKYIDQGI----------AELVPGVLFIDEVHMLDLE--TFMP--HLETFTYLHRALE---SAIAPIVIFATNRGR 288 (409)
Q Consensus 228 --~~~~~~~~~~----------~~~~~gvl~ide~~~l~~~--~~~~--~~~~~~~L~~~~e---~~~~~~~i~~~~~~~ 288 (409)
...+|.-+.. ....|.++|+||++.+-.+ +-.- +.+..+-|++.|. .....+|+.|||++
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRp- 580 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRP- 580 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCCh-
Confidence 4455554322 2367789999999988664 0000 2344677777554 44567888899984
Q ss_pred eeecccccCCCCCCCchhhhh--hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHhcCCccHHHHHHHHH
Q psy2778 289 CLVRGTDDIISPHGIPLDLLD--RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~--r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~-~l~~I~~~s~~g~~R~al~ll~ 364 (409)
..+.+++++ |+ .+|.+++++.+.-.+|++.++++ .+++++ -++.|++.+.+-|.+.-..+++
T Consensus 581 ------------d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 581 ------------DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred ------------hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 445555666 66 46788899999999999988876 566666 6899999987779999999999
Q ss_pred HHHHHHHHh--CCCCccHHHHHHHHH
Q psy2778 365 PAALTAKTN--GRTAISKQDILEVST 388 (409)
Q Consensus 365 ~~~~~a~~~--~~~~I~~~~v~~~~~ 388 (409)
.|+..|..+ ....|+.+|..+++.
T Consensus 647 ~A~~~a~~e~i~a~~i~~~hf~~al~ 672 (693)
T KOG0730|consen 647 EAALLALRESIEATEITWQHFEEALK 672 (693)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHH
Confidence 999888643 245788999988875
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.5e-30 Score=247.46 Aligned_cols=138 Identities=24% Similarity=0.329 Sum_probs=113.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQK 322 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~ 322 (409)
.++|+||+|++++. -+.+|+..||+ +.+++++.| |+||+|.+.+.++|||.++.++|++.+
T Consensus 106 tiLflDEIHRfnK~-------QQD~lLp~vE~-----------G~iilIGAT-TENPsF~ln~ALlSR~~vf~lk~L~~~ 166 (436)
T COG2256 106 TILFLDEIHRFNKA-------QQDALLPHVEN-----------GTIILIGAT-TENPSFELNPALLSRARVFELKPLSSE 166 (436)
T ss_pred eEEEEehhhhcChh-------hhhhhhhhhcC-----------CeEEEEecc-CCCCCeeecHHHhhhhheeeeecCCHH
Confidence 47777888888775 55566666653 444444445 899999999999999999999999999
Q ss_pred HHHHHHHHHHhh--cCCC-----CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHH
Q psy2778 323 DMEAIIKLRANT--EGHV-----LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKS 395 (409)
Q Consensus 323 e~~~il~~~~~~--~~~~-----i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~ 395 (409)
++.+++++.+.. .+++ ++++++++|++.+ +||+|.|+|+||.+...++... .++.+.++++++ ++
T Consensus 167 di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s-~GD~R~aLN~LE~~~~~~~~~~--~~~~~~l~~~l~-----~~ 238 (436)
T COG2256 167 DIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS-NGDARRALNLLELAALSAEPDE--VLILELLEEILQ-----RR 238 (436)
T ss_pred HHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc-CchHHHHHHHHHHHHHhcCCCc--ccCHHHHHHHHh-----hh
Confidence 999999974433 3454 8999999999999 9999999999999998875432 455999999998 89
Q ss_pred HHHHHHHhhhhh
Q psy2778 396 SARILTENKDKF 407 (409)
Q Consensus 396 ~~~~~~~~~~~~ 407 (409)
+.+|+++||.||
T Consensus 239 ~~~~Dk~gD~hY 250 (436)
T COG2256 239 SARFDKDGDAHY 250 (436)
T ss_pred hhccCCCcchHH
Confidence 999999999999
No 11
>KOG0736|consensus
Probab=99.97 E-value=5.4e-30 Score=258.46 Aligned_cols=184 Identities=23% Similarity=0.282 Sum_probs=151.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
+|..+..|||||||||||||.+|+|+|.++.. .|+.+.|+++..+|+|++| +++++|++|+ ..+|||||+||+|
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL--~FlSVKGPELLNMYVGqSE~NVR~VFerAR---~A~PCVIFFDELD 774 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELLNMYVGQSEENVREVFERAR---SAAPCVIFFDELD 774 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhcee--eEEeecCHHHHHHHhcchHHHHHHHHHHhh---ccCCeEEEecccc
Confidence 46666789999999999999999999999985 9999999999999999999 9999999995 5689999999999
Q ss_pred cccccccCCCCC--CccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 83 ELTPVETENPMG--GYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 83 ~i~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+++|+|+.+..+ -++|.++|++..|+.+... ..+-|+|+++||+++-+|++..||||||
T Consensus 775 SlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~-------------------~s~~VFViGATNRPDLLDpALLRPGRFD 835 (953)
T KOG0736|consen 775 SLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS-------------------SSQDVFVIGATNRPDLLDPALLRPGRFD 835 (953)
T ss_pred ccCccCCCCCCccccHHHHHHHHHHHhhcccCC-------------------CCCceEEEecCCCccccChhhcCCCccc
Confidence 999999877644 3479999998888766531 2355666677779999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC---hHHHHHHHHHHHhhhh
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG---GQDILSMVGQLIKSKK 214 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g---gadi~~l~~~~~~~~~ 214 (409)
.- .|+..+ .+...+..+++.+|.. |+..+|++++- |||++++|..++-...
T Consensus 836 KL--vyvG~~-~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 836 KL--VYVGPN-EDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAI 896 (953)
T ss_pred ee--EEecCC-ccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHH
Confidence 53 233333 3455666788887653 57788998877 9999999988876543
No 12
>KOG0734|consensus
Probab=99.96 E-value=5.5e-30 Score=249.24 Aligned_cols=174 Identities=22% Similarity=0.320 Sum_probs=146.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|+. |+||||+||||||||.||||+|.|.+ +||++.+++++--.++|... +++.+|+.|. ..+||||||||+|+
T Consensus 334 GKL-PKGVLLvGPPGTGKTlLARAvAGEA~--VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk---~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 334 GKL-PKGVLLVGPPGTGKTLLARAVAGEAG--VPFFYASGSEFDEMFVGVGARRVRDLFAAAK---ARAPCIIFIDEIDA 407 (752)
T ss_pred CcC-CCceEEeCCCCCchhHHHHHhhcccC--CCeEeccccchhhhhhcccHHHHHHHHHHHH---hcCCeEEEEechhh
Confidence 445 59999999999999999999999988 69999999999999999987 8999999995 57999999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+.++|..........+++|++..|+.. .....|+|+++||.+..+++++.||||||+
T Consensus 408 vG~kR~~~~~~y~kqTlNQLLvEmDGF---------------------~qNeGiIvigATNfpe~LD~AL~RPGRFD~-- 464 (752)
T KOG0734|consen 408 VGGKRNPSDQHYAKQTLNQLLVEMDGF---------------------KQNEGIIVIGATNFPEALDKALTRPGRFDR-- 464 (752)
T ss_pred hcccCCccHHHHHHHHHHHHHHHhcCc---------------------CcCCceEEEeccCChhhhhHHhcCCCccce--
Confidence 999988776555567888887766543 344455555666699999999999999995
Q ss_pred eeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHH
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQL 209 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~ 209 (409)
.|-+|.||++-|.+|+..+..+ |++.+|..|.| |||+.++++.+
T Consensus 465 --~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 465 --HVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred --eEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 5666677999999998765432 68899999999 99999999654
No 13
>KOG0735|consensus
Probab=99.95 E-value=1.8e-27 Score=238.34 Aligned_cols=175 Identities=25% Similarity=0.328 Sum_probs=154.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
..-+.|||||||||||||.+|.++|..++ +.|+.+.|+++.++|+|.+| +++.+|.+|. ..+|||+|+||+|++
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~~--~~fisvKGPElL~KyIGaSEq~vR~lF~rA~---~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNSN--LRFISVKGPELLSKYIGASEQNVRDLFERAQ---SAKPCILFFDEFDSI 772 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhCC--eeEEEecCHHHHHHHhcccHHHHHHHHHHhh---ccCCeEEEecccccc
Confidence 34468999999999999999999999888 59999999999999999999 9999999996 468999999999999
Q ss_pred cccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccce
Q psy2778 85 TPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAE 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~ 164 (409)
+|+|+....+-..|.+++++.+|+... .-+.|+|.|+|.+++-++++..|+||+|
T Consensus 773 APkRGhDsTGVTDRVVNQlLTelDG~E---------------------gl~GV~i~aaTsRpdliDpALLRpGRlD---- 827 (952)
T KOG0735|consen 773 APKRGHDSTGVTDRVVNQLLTELDGAE---------------------GLDGVYILAATSRPDLIDPALLRPGRLD---- 827 (952)
T ss_pred CcccCCCCCCchHHHHHHHHHhhcccc---------------------ccceEEEEEecCCccccCHhhcCCCccc----
Confidence 999998888888899999988876554 3467888888889999999999999999
Q ss_pred eeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 165 EYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 165 ~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
..+.+|-|+...|.+|++.++. .|++.+|.+|+| |||+..++..+-
T Consensus 828 ~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~ 882 (952)
T KOG0735|consen 828 KLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQ 882 (952)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHH
Confidence 6777888888889999987754 278999999999 999999986554
No 14
>KOG0738|consensus
Probab=99.95 E-value=7.4e-28 Score=227.03 Aligned_cols=178 Identities=22% Similarity=0.336 Sum_probs=144.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHH-HHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEV-LMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~-l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
.+.|-+|||++||||||||+||+|+|.+++. .|+.++++.+.|+|=|++|+ ++-+|..|. ..+|++|||||||+
T Consensus 241 irrPWkgvLm~GPPGTGKTlLAKAvATEc~t--TFFNVSsstltSKwRGeSEKlvRlLFemAR---fyAPStIFiDEIDs 315 (491)
T KOG0738|consen 241 IRRPWKGVLMVGPPGTGKTLLAKAVATECGT--TFFNVSSSTLTSKWRGESEKLVRLLFEMAR---FYAPSTIFIDEIDS 315 (491)
T ss_pred cccccceeeeeCCCCCcHHHHHHHHHHhhcC--eEEEechhhhhhhhccchHHHHHHHHHHHH---HhCCceeehhhHHH
Confidence 3567899999999999999999999999995 99999999999999999995 467788884 67999999999999
Q ss_pred ccccccCCC-CCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 84 LTPVETENP-MGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 84 i~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
|++.|++.. +.++.|..+.++.+|+...+.. +...+|+|+|+||.+|.++.+++| ||...
T Consensus 316 lcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~-----------------e~~k~VmVLAATN~PWdiDEAlrR--RlEKR 376 (491)
T KOG0738|consen 316 LCSQRGGSSEHEASRRVKSELLVQMDGVQGTL-----------------ENSKVVMVLAATNFPWDIDEALRR--RLEKR 376 (491)
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhhcccccc-----------------ccceeEEEEeccCCCcchHHHHHH--HHhhh
Confidence 999988764 5566677888888887776432 335789999999999999988765 66633
Q ss_pred ceeeccCCCccHHHHHHHHhhc----CH---hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDV----TL---HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~----~~---~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
++||+|..+. |..+++.. .. -+++.+++.++| |+||.++|..+.
T Consensus 377 --IyIPLP~~~~--R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 377 --IYIPLPDAEA--RSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREAS 429 (491)
T ss_pred --eeeeCCCHHH--HHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHH
Confidence 6788886554 55554432 22 258899999999 999999996654
No 15
>KOG0727|consensus
Probab=99.95 E-value=2.1e-27 Score=212.49 Aligned_cols=177 Identities=24% Similarity=0.356 Sum_probs=143.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|.-||+|+|+|||||||||+|++|+|+...+ .|+.+.+|++..+|.|+.. -++.+|+-|. .++|+||||||+|+
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~a--~firvvgsefvqkylgegprmvrdvfrlak---enapsiifideida 259 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTA--AFIRVVGSEFVQKYLGEGPRMVRDVFRLAK---ENAPSIIFIDEIDA 259 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccch--heeeeccHHHHHHHhccCcHHHHHHHHHHh---ccCCcEEEeehhhh
Confidence 7789999999999999999999999998876 9999999999999999998 5799999995 68999999999999
Q ss_pred ccccccCCCCCCccchhhhHHHh-hhcccCcccccCChHHHHHHhhhccccC-cEEEEEcccccccccCccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIG-LKTAKGTKQLKLDPTIYESLQKEKVEVG-DVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~l~~~~~~~l~~~~i~~~-~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
|..+|.+...+.. +.+..+++. |.++|| +... .+-+|.|| |+.+-++++..++||+|+
T Consensus 260 iatkrfdaqtgad-revqril~ellnqmdg------------------fdq~~nvkvimat-nradtldpallrpgrldr 319 (408)
T KOG0727|consen 260 IATKRFDAQTGAD-REVQRILIELLNQMDG------------------FDQTTNVKVIMAT-NRADTLDPALLRPGRLDR 319 (408)
T ss_pred Hhhhhcccccccc-HHHHHHHHHHHHhccC------------------cCcccceEEEEec-CcccccCHhhcCCccccc
Confidence 9999988875544 444444433 333443 3333 44555555 588999999999999996
Q ss_pred cceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
. +.+|-+|.+.++.+++.++.. |++.+..+++. ||||.++|+.+-
T Consensus 320 k----iefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeag 373 (408)
T KOG0727|consen 320 K----IEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAG 373 (408)
T ss_pred c----ccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHh
Confidence 4 556666888888888877542 78888888888 999999997653
No 16
>KOG0728|consensus
Probab=99.95 E-value=8.3e-27 Score=208.50 Aligned_cols=203 Identities=18% Similarity=0.282 Sum_probs=161.9
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|...|+|+|||||||||||.+|+++|....+ .|+.++++++..+|+|+.. -+++.|-.|. ..+|+|||+||||
T Consensus 176 LGIaQPKGvlLygppgtGktLlaraVahht~c--~firvsgselvqk~igegsrmvrelfvmar---ehapsiifmdeid 250 (404)
T KOG0728|consen 176 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSELVQKYIGEGSRMVRELFVMAR---EHAPSIIFMDEID 250 (404)
T ss_pred cCCCCCcceEEecCCCCchhHHHHHHHhhcce--EEEEechHHHHHHHhhhhHHHHHHHHHHHH---hcCCceEeeeccc
Confidence 36677899999999999999999999998875 9999999999999999988 5689998884 6899999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
+|.++|.++..++.+...+.++-.|.+.| |++....+-++.+||+++.++++..++||.|+
T Consensus 251 sigs~r~e~~~ggdsevqrtmlellnqld------------------gfeatknikvimatnridild~allrpgridr- 311 (404)
T KOG0728|consen 251 SIGSSRVESGSGGDSEVQRTMLELLNQLD------------------GFEATKNIKVIMATNRIDILDPALLRPGRIDR- 311 (404)
T ss_pred ccccccccCCCCccHHHHHHHHHHHHhcc------------------ccccccceEEEEeccccccccHhhcCCCcccc-
Confidence 99999988877766666666554444444 33433344444445699999999999999995
Q ss_pred ceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHH----HHhhhhhhhhHH-HHHHHHHH
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQ----LIKSKKTEITDK-LRKEINKV 228 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~----~~~~~~~~~~~~-~~~~i~~~ 228 (409)
.+.+|.|+...|.+|++.++.. ++..+|++..| ||+++..|.. ++++++..++++ ++-.+.++
T Consensus 312 ---kiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 312 ---KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred ---cccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 6778888999999999877653 78899999999 9999999954 466776666654 55555655
Q ss_pred HHHHH
Q psy2778 229 VNKYI 233 (409)
Q Consensus 229 ~~~~~ 233 (409)
+++.-
T Consensus 389 m~k~~ 393 (404)
T KOG0728|consen 389 MQKDS 393 (404)
T ss_pred Hhccc
Confidence 55543
No 17
>KOG0739|consensus
Probab=99.94 E-value=1.8e-27 Score=217.37 Aligned_cols=178 Identities=22% Similarity=0.348 Sum_probs=142.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHH-HHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVL-MENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l-~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
++.|-+||||||||||||+.||+|+|.+.+. .|+.++.|++.++|+|++|+| .++|..|+ ...|+||||||||+
T Consensus 162 kR~PwrgiLLyGPPGTGKSYLAKAVATEAnS--TFFSvSSSDLvSKWmGESEkLVknLFemAR---e~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 162 KRKPWRGILLYGPPGTGKSYLAKAVATEANS--TFFSVSSSDLVSKWMGESEKLVKNLFEMAR---ENKPSIIFIDEIDS 236 (439)
T ss_pred CCCcceeEEEeCCCCCcHHHHHHHHHhhcCC--ceEEeehHHHHHHHhccHHHHHHHHHHHHH---hcCCcEEEeehhhh
Confidence 4567799999999999999999999999996 999999999999999999965 78888884 68999999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
++++|+++.+.+..|....++.+|... | ...+.++|+++||.++.++.+.+| ||+..
T Consensus 237 lcg~r~enEseasRRIKTEfLVQMqGV-------------------G-~d~~gvLVLgATNiPw~LDsAIRR--RFekR- 293 (439)
T KOG0739|consen 237 LCGSRSENESEASRRIKTEFLVQMQGV-------------------G-NDNDGVLVLGATNIPWVLDSAIRR--RFEKR- 293 (439)
T ss_pred hccCCCCCchHHHHHHHHHHHHhhhcc-------------------c-cCCCceEEEecCCCchhHHHHHHH--Hhhcc-
Confidence 999999888777777666665554322 2 234566666777799999987765 88843
Q ss_pred eeeccCCCccHHHHHHHHhh--------cCHhhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQD--------VTLHDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~--------~~~~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
+|||+| +...|..+++. ++..|+..++.+|+| |+||.-++..++-+.
T Consensus 294 -IYIPLP--e~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmeP 350 (439)
T KOG0739|consen 294 -IYIPLP--EAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEP 350 (439)
T ss_pred -eeccCC--cHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhh
Confidence 677777 45556666643 455689999999999 999987776666543
No 18
>KOG0726|consensus
Probab=99.94 E-value=1.5e-26 Score=210.79 Aligned_cols=197 Identities=22% Similarity=0.312 Sum_probs=153.8
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHH-HHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEV-LMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~-l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
-|..||+||+|||+||||||.||+|+|+...+ .|+.+.+|++..+|.|+..+ ++++|+.|. ..+|+|+||||||
T Consensus 214 mGikpPKGVIlyG~PGTGKTLLAKAVANqTSA--TFlRvvGseLiQkylGdGpklvRqlF~vA~---e~apSIvFiDEId 288 (440)
T KOG0726|consen 214 MGIKPPKGVILYGEPGTGKTLLAKAVANQTSA--TFLRVVGSELIQKYLGDGPKLVRELFRVAE---EHAPSIVFIDEID 288 (440)
T ss_pred cCCCCCCeeEEeCCCCCchhHHHHHHhcccch--hhhhhhhHHHHHHHhccchHHHHHHHHHHH---hcCCceEEeehhh
Confidence 37789999999999999999999999999986 99999999999999999995 599999985 6799999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
++..+|.++.+++-....+.++-.|++.||.. ..||+-+|.||| ++..++|+.-|+||.|+
T Consensus 289 AiGtKRyds~SggerEiQrtmLELLNQldGFd-----------------srgDvKvimATn-rie~LDPaLiRPGrIDr- 349 (440)
T KOG0726|consen 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------------SRGDVKVIMATN-RIETLDPALIRPGRIDR- 349 (440)
T ss_pred hhccccccCCCccHHHHHHHHHHHHHhccCcc-----------------ccCCeEEEEecc-cccccCHhhcCCCcccc-
Confidence 99999998877666655555555455555432 378999998886 99999999999999995
Q ss_pred ceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHH----HHhhhhhhhh-HHHHHHHHH
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQ----LIKSKKTEIT-DKLRKEINK 227 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~----~~~~~~~~~~-~~~~~~i~~ 227 (409)
.|.+|.||...++.|++.++.. .++.+.-..+. ||||+++|.. ++++++..+. +.+.+...+
T Consensus 350 ---KIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 350 ---KIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEK 425 (440)
T ss_pred ---ccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHH
Confidence 5667777888899898876532 25544443333 9999999954 4455544443 334444443
No 19
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=4.6e-26 Score=216.98 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=131.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhh--hhcccceEEeccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGL--RIKESKEVYEGEV 81 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~--~~~~~~ii~iDEi 81 (409)
|..+|++++||||||||||++|+++|++++. +|+.++++++.++|+|++| .+++.|+.|... ...+||+||||||
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~--~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI--EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC--CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 5677899999999999999999999999996 9999999999999999999 789999999753 2457999999999
Q ss_pred ccccccccCCCCCCccchh-hhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 82 TELTPVETENPMGGYGKTV-SHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 82 d~i~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
|++++.+.+.......+.+ ++++..++... ...++. ++ ........|+|++|+|++..+++++.|+||||
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~---~v~l~G-~w-----~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD 292 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNIADNPT---NVSLGG-DW-----REKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 292 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHhcCCc---cccccc-cc-----cccccCCCceEEEeCCCcccCCHhHcCCCCCC
Confidence 9999988643322223333 34433333210 000000 00 00112334666677789999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCH------hhHHHhhcCCCC-hHHHHH
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTL------HDLDMANAKPQG-GQDILS 204 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~------~dl~~~a~~~~g-gadi~~ 204 (409)
. .+++ |+...|.+|++.+.. .++..++..+.| +-|+..
T Consensus 293 k----~i~l--Pd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~G 337 (413)
T PLN00020 293 K----FYWA--PTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFG 337 (413)
T ss_pred c----eeCC--CCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhh
Confidence 6 3444 467779999886543 367788888887 555544
No 20
>KOG2028|consensus
Probab=99.94 E-value=5.9e-26 Score=212.58 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=111.4
Q ss_pred cccccccccccc---cccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 244 VLFIDEVHMLDL---ETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 244 vl~ide~~~l~~---~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
|+||||+|+.++ ++||||+| ++.+++|+.| ++||+|.+...|+|||.++.+++++
T Consensus 225 ilFiDEiHRFNksQQD~fLP~VE---------------------~G~I~lIGAT-TENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQQDTFLPHVE---------------------NGDITLIGAT-TENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred EEEeHHhhhhhhhhhhcccceec---------------------cCceEEEecc-cCCCccchhHHHHhccceeEeccCC
Confidence 566666665555 46778877 6667777777 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHh------hc-------CCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-hC---CCCccHHHH
Q psy2778 321 QKDMEAIIKLRAN------TE-------GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT-NG---RTAISKQDI 383 (409)
Q Consensus 321 ~~e~~~il~~~~~------~~-------~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~-~~---~~~I~~~~v 383 (409)
.+++..||.+... .. .+.+++.++++|+.++ .||+|.|+|.||++..+.-. .| +..++++||
T Consensus 283 ~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls-dGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDv 361 (554)
T KOG2028|consen 283 VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS-DGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDV 361 (554)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHhhcCCcccceecHHHH
Confidence 9999999996333 11 2468899999999999 99999999999998544432 22 457999999
Q ss_pred HHHHHhccChHHHHHHHHHhhhhh
Q psy2778 384 LEVSTLFLDAKSSARILTENKDKF 407 (409)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~ 407 (409)
++.+. +.++-|+.-|++||
T Consensus 362 ke~lq-----~s~~~YDr~Ge~HY 380 (554)
T KOG2028|consen 362 KEGLQ-----RSHILYDRAGEEHY 380 (554)
T ss_pred HHHHh-----hccceecccchhHH
Confidence 99998 88899999999999
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.9e-26 Score=232.71 Aligned_cols=180 Identities=22% Similarity=0.312 Sum_probs=151.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+++++|||||||||||++|+++|.++++ +|+.++++++.++|+|+++ ++++.|+.|. ..+|||||+||+|+
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~--~fi~v~~~~l~sk~vGesek~ir~~F~~A~---~~~p~iiFiDEiDs 346 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRS--RFISVKGSELLSKWVGESEKNIRELFEKAR---KLAPSIIFIDEIDS 346 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCC--eEEEeeCHHHhccccchHHHHHHHHHHHHH---cCCCcEEEEEchhh
Confidence 6678899999999999999999999999986 9999999999999999999 8999999996 46899999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+.+.|+....+...+.+++++..++ +++...-|+++++||+++.++++..++||||
T Consensus 347 ~~~~r~~~~~~~~~r~~~~lL~~~d---------------------~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd--- 402 (494)
T COG0464 347 LASGRGPSEDGSGRRVVGQLLTELD---------------------GIEKAEGVLVIAATNRPDDLDPALLRPGRFD--- 402 (494)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhc---------------------CCCccCceEEEecCCCccccCHhhcccCccc---
Confidence 9999987765555677777766554 3444455677777789999999999999999
Q ss_pred eeeccCCCccHHHHHHHHhhcCH---------hhHHHhhcCCCC--hHHHHHHHHHHHhhhh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTL---------HDLDMANAKPQG--GQDILSMVGQLIKSKK 214 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~---------~dl~~~a~~~~g--gadi~~l~~~~~~~~~ 214 (409)
..+.+|.|+...|..+++.+.. -++..++..++| |+||..+|..+.....
T Consensus 403 -~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 403 -RLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred -eEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4666666688889998876544 257788999999 9999999987765543
No 22
>KOG0729|consensus
Probab=99.93 E-value=1e-25 Score=203.19 Aligned_cols=205 Identities=19% Similarity=0.293 Sum_probs=156.0
Q ss_pred ccccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecc
Q psy2778 2 IKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 2 i~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
++.|.-||+|+|+|||||||||.+|+|+|+..++ .|+.+-+|++..+|+|+.. -++++|+.|. .+..||||+||
T Consensus 204 v~lgidppkgvllygppgtgktl~aravanrtda--cfirvigselvqkyvgegarmvrelf~mar---tkkaciiffde 278 (435)
T KOG0729|consen 204 VNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--CFIRVIGSELVQKYVGEGARMVRELFEMAR---TKKACIIFFDE 278 (435)
T ss_pred hhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--eEEeehhHHHHHHHhhhhHHHHHHHHHHhc---ccceEEEEeec
Confidence 5678899999999999999999999999999987 9999999999999999998 5799999995 46889999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccc-cCcEEEEEcccccccccCccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVE-VGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~-~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+|++.+.|.+...++.....+.++-.+.+.| |+. .|.+-++.|| |+++.+++++.++||+
T Consensus 279 idaiggarfddg~ggdnevqrtmleli~qld------------------gfdprgnikvlmat-nrpdtldpallrpgrl 339 (435)
T KOG0729|consen 279 IDAIGGARFDDGAGGDNEVQRTMLELINQLD------------------GFDPRGNIKVLMAT-NRPDTLDPALLRPGRL 339 (435)
T ss_pred cccccCccccCCCCCcHHHHHHHHHHHHhcc------------------CCCCCCCeEEEeec-CCCCCcCHhhcCCccc
Confidence 9999999988766655444444433232232 333 4555555555 5999999999999999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCHh-----h--HHHhhcCCCC--hHHHHHHHHHH----Hhhhhhhhh-HHHHHHH
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTLH-----D--LDMANAKPQG--GQDILSMVGQL----IKSKKTEIT-DKLRKEI 225 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~~-----d--l~~~a~~~~g--gadi~~l~~~~----~~~~~~~~~-~~~~~~i 225 (409)
|+.+++.+| |+..|..|++.++.. | .+.+|..+.+ ||+|.++|..+ .+.++...+ ..+-+.+
T Consensus 340 drkvef~lp----dlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 340 DRKVEFGLP----DLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred ccceeccCC----cccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 987555544 445577777655432 3 5567777777 99999999553 344443333 4677888
Q ss_pred HHHHHHHHh
Q psy2778 226 NKVVNKYID 234 (409)
Q Consensus 226 ~~~~~~~~~ 234 (409)
+++++.|.+
T Consensus 416 ~kvvkgy~k 424 (435)
T KOG0729|consen 416 NKVVKGYAK 424 (435)
T ss_pred HHHHHHHHh
Confidence 888887754
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.93 E-value=1.7e-25 Score=225.93 Aligned_cols=177 Identities=15% Similarity=0.177 Sum_probs=136.5
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+|+|||||||||||++|+++|++++. +|+.++++.++++|+|+++ +++++|+.|. ..+||||||||+|
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~~~l~~~~l~~~~vGese~~l~~~f~~A~---~~~P~IL~IDEID 328 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PLLRLDVGKLFGGIVGESESRMRQMIRIAE---ALSPCILWIDEID 328 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEEEEEhHHhcccccChHHHHHHHHHHHHH---hcCCcEEEehhhh
Confidence 36677899999999999999999999999986 9999999999999999998 8999999885 4589999999999
Q ss_pred cccccccCCCCC-CccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccc
Q psy2778 83 ELTPVETENPMG-GYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 83 ~i~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
.+++.+.....+ ...+.++.++..|. .....++|++|+|+++.++++..|+||||.
T Consensus 329 ~~~~~~~~~~d~~~~~rvl~~lL~~l~-----------------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~ 385 (489)
T CHL00195 329 KAFSNSESKGDSGTTNRVLATFITWLS-----------------------EKKSPVFVVATANNIDLLPLEILRKGRFDE 385 (489)
T ss_pred hhhccccCCCCchHHHHHHHHHHHHHh-----------------------cCCCceEEEEecCChhhCCHHHhCCCcCCe
Confidence 998754432212 22223333322221 123456677888899999999999999995
Q ss_pred cceeeccCCCccHHHHHHHHhhcC---------HhhHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVT---------LHDLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~---------~~dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
. +++++| +...|..|++.+. ..+++.++..|+| |+||.++|..+...
T Consensus 386 ~--i~v~lP--~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~ 443 (489)
T CHL00195 386 I--FFLDLP--SLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYI 443 (489)
T ss_pred E--EEeCCc--CHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 3 344444 6777888887542 2368899999999 99999999777643
No 24
>KOG0731|consensus
Probab=99.93 E-value=1.2e-25 Score=231.41 Aligned_cols=177 Identities=19% Similarity=0.281 Sum_probs=143.1
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEV 81 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEi 81 (409)
+.|-..|+|+||+||||||||+||+|+|.|.+ +||+.+++|++.-.++|... +++.+|..|. ..+|||||+||+
T Consensus 338 ~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VPF~svSGSEFvE~~~g~~asrvr~lf~~ar---~~aP~iifidei 412 (774)
T KOG0731|consen 338 ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSVSGSEFVEMFVGVGASRVRDLFPLAR---KNAPSIIFIDEI 412 (774)
T ss_pred HcCCcCcCceEEECCCCCcHHHHHHHHhcccC--CceeeechHHHHHHhcccchHHHHHHHHHhh---ccCCeEEEeccc
Confidence 45777889999999999999999999999998 69999999999999999865 8999999995 579999999999
Q ss_pred ccccccccCC----CCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccc
Q psy2778 82 TELTPVETEN----PMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAA 157 (409)
Q Consensus 82 d~i~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~ 157 (409)
|++...|.+. .....+.+++|++..|+... ..+-|+++++||+++.+++++.|+|
T Consensus 413 da~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~---------------------~~~~vi~~a~tnr~d~ld~allrpG 471 (774)
T KOG0731|consen 413 DAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE---------------------TSKGVIVLAATNRPDILDPALLRPG 471 (774)
T ss_pred ccccccccccccCCCChHHHHHHHHHHHHhcCCc---------------------CCCcEEEEeccCCccccCHHhcCCC
Confidence 9999998531 22233457777776665443 3344555666679999999999999
Q ss_pred cccccceeeccCCCccHHHHHHHHhhcCH--------hhHHHhhcCCCC--hHHHHHHHHHH
Q psy2778 158 EFDLEAEEYVPLPKGDVHKKKEVIQDVTL--------HDLDMANAKPQG--GQDILSMVGQL 209 (409)
Q Consensus 158 rfd~~~~~~i~~p~~~~~~r~~il~~~~~--------~dl~~~a~~~~g--gadi~~l~~~~ 209 (409)
|||+. +.++.|+...|..|++.+.. .++..+|..|+| ||||.++|+.+
T Consensus 472 Rfdr~----i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 472 RFDRQ----IQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEA 529 (774)
T ss_pred ccccc----eeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHH
Confidence 99964 44555578889998876532 246679999999 99999999654
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=6e-24 Score=227.50 Aligned_cols=339 Identities=22% Similarity=0.318 Sum_probs=223.0
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+++++|||||||||||++|+++|++++. +++.++++++.+.+.|+++ .++++|+.+. ...|++|||||+|
T Consensus 207 ~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~---~~~p~il~iDEid 281 (733)
T TIGR01243 207 LGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YFISINGPEIMSKYYGESEERLREIFKEAE---ENAPSIIFIDEID 281 (733)
T ss_pred cCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEecHHHhcccccHHHHHHHHHHHHHH---hcCCcEEEeehhh
Confidence 35567899999999999999999999999986 8999999999999999988 7899999885 3579999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccc-cCcEEEEEcccccccccCccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVE-VGDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~-~~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
.+++++.........+.+++++..++ ++. .+.++ ++++++.+..++++..+++|||.
T Consensus 282 ~l~~~r~~~~~~~~~~~~~~Ll~~ld---------------------~l~~~~~vi-vI~atn~~~~ld~al~r~gRfd~ 339 (733)
T TIGR01243 282 AIAPKREEVTGEVEKRVVAQLLTLMD---------------------GLKGRGRVI-VIGATNRPDALDPALRRPGRFDR 339 (733)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhh---------------------ccccCCCEE-EEeecCChhhcCHHHhCchhccE
Confidence 99987754322211233333332222 222 23444 44555688889999999999996
Q ss_pred cceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhhhhhh-------------h--
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKSKKTE-------------I-- 217 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~~~~~-------------~-- 217 (409)
. +.++.|+...|..+++.... .+++.++..++| |+|+..+|..+....... +
T Consensus 340 ~----i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~ 415 (733)
T TIGR01243 340 E----IVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPA 415 (733)
T ss_pred E----EEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 4 33444466778888875432 258899999999 999999886433211000 0
Q ss_pred ----------------------------------------------hHHHHHHHHH------------------------
Q psy2778 218 ----------------------------------------------TDKLRKEINK------------------------ 227 (409)
Q Consensus 218 ----------------------------------------------~~~~~~~i~~------------------------ 227 (409)
.+.+++.+.-
T Consensus 416 ~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~Gp 495 (733)
T TIGR01243 416 EVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGP 495 (733)
T ss_pred hhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECC
Confidence 0001111100
Q ss_pred ---------------------------HHHHHHhhcc----------ccccCCccccccccccccccc---Cc--hhhhH
Q psy2778 228 ---------------------------VVNKYIDQGI----------AELVPGVLFIDEVHMLDLETF---MP--HLETF 265 (409)
Q Consensus 228 ---------------------------~~~~~~~~~~----------~~~~~gvl~ide~~~l~~~~~---~~--~~~~~ 265 (409)
...+|..+.. ....|.++||||++.+-...- .. ..+..
T Consensus 496 pGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~ 575 (733)
T TIGR01243 496 PGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIV 575 (733)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHH
Confidence 1112221110 123468999999987743200 00 12345
Q ss_pred HHHHHHhcc---cCCceEEEecCcceeeecccccCCCCCCCchhhh--hhh-heeecCCCCHHHHHHHHHHHHhhcCCCC
Q psy2778 266 TYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLL--DRL-LIIRTTPYNQKDMEAIIKLRANTEGHVL 339 (409)
Q Consensus 266 ~~L~~~~e~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~--~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i 339 (409)
+.|...|+. ....+||.+||+ |+.+.++++ +|| ..+.+++++.++..+|++....+. ++
T Consensus 576 ~~lL~~ldg~~~~~~v~vI~aTn~-------------~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~--~~ 640 (733)
T TIGR01243 576 NQLLTEMDGIQELSNVVVIAATNR-------------PDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM--PL 640 (733)
T ss_pred HHHHHHhhcccCCCCEEEEEeCCC-------------hhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC--CC
Confidence 666666653 233556666664 556777777 488 578899999999999998666544 44
Q ss_pred C-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhC------------------CCCccHHHHHHHHH
Q psy2778 340 D-DEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNG------------------RTAISKQDILEVST 388 (409)
Q Consensus 340 ~-~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~------------------~~~I~~~~v~~~~~ 388 (409)
+ +..++.|++.+.+-+....-+++..|...|..+. ...|+.+|+.+++.
T Consensus 641 ~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~ 708 (733)
T TIGR01243 641 AEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALK 708 (733)
T ss_pred CccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHH
Confidence 3 3348889999855577777777777776553310 12588888877775
No 26
>KOG0989|consensus
Probab=99.92 E-value=5.9e-25 Score=202.38 Aligned_cols=105 Identities=23% Similarity=0.304 Sum_probs=97.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-CCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.++++||+|.++.+ ++++|+|+||++ ....||+.||. ...+|..+.|||..++|+++..
T Consensus 131 KiiIlDEcdsmtsd-------aq~aLrr~mE~~s~~trFiLIcny-------------lsrii~pi~SRC~KfrFk~L~d 190 (346)
T KOG0989|consen 131 KIIILDECDSMTSD-------AQAALRRTMEDFSRTTRFILICNY-------------LSRIIRPLVSRCQKFRFKKLKD 190 (346)
T ss_pred eEEEEechhhhhHH-------HHHHHHHHHhccccceEEEEEcCC-------------hhhCChHHHhhHHHhcCCCcch
Confidence 69999999999999 999999999995 44778888874 4577888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAAL 368 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~ 368 (409)
+++.+.|+.+|.+||++|++++++.|++.| +||+|+|+.+|+.+..
T Consensus 191 ~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S-~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 191 EDIVDRLEKIASKEGVDIDDDALKLIAKIS-DGDLRRAITTLQSLSL 236 (346)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHhhc
Confidence 999999999999999999999999999999 9999999999998876
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.92 E-value=2e-25 Score=199.97 Aligned_cols=119 Identities=26% Similarity=0.295 Sum_probs=88.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCc---------ceeeecccccCCCCCCCchhhhhhhhe
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNR---------GRCLVRGTDDIISPHGIPLDLLDRLLI 313 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~r~~~ 313 (409)
.|+||||+|.+++. .+.+|+..||+..-.+++.+... ..++++.| |- ...++..|++|+-+
T Consensus 103 ~ILFIDEIHRlnk~-------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT-Tr--~g~ls~pLrdRFgi 172 (233)
T PF05496_consen 103 DILFIDEIHRLNKA-------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT-TR--AGLLSSPLRDRFGI 172 (233)
T ss_dssp -EEEECTCCC--HH-------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE-SS--GCCTSHCCCTTSSE
T ss_pred cEEEEechhhccHH-------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee-cc--ccccchhHHhhcce
Confidence 48999999999998 89999999998544444443321 13344444 22 24667889999966
Q ss_pred -eecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Q psy2778 314 -IRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT 372 (409)
Q Consensus 314 -i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~ 372 (409)
.++..|+.+|+.+|+++.+...++++++++..+|++.| +|+||.|+++|+++.++|+.
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs-rGtPRiAnrll~rvrD~a~v 231 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRS-RGTPRIANRLLRRVRDFAQV 231 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT-TTSHHHHHHHHHHHCCCCCC
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 99999999999999887754
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.92 E-value=9.7e-25 Score=196.26 Aligned_cols=170 Identities=24% Similarity=0.331 Sum_probs=131.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|.-+|++||||||||||||++|+|+|++.+ +|++.+++.++.+.++|... .+++++.+|. ..+|||+||||+|+
T Consensus 147 g~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~vkat~liGehVGdgar~Ihely~rA~---~~aPcivFiDE~DA 221 (368)
T COG1223 147 GDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKATELIGEHVGDGARRIHELYERAR---KAAPCIVFIDELDA 221 (368)
T ss_pred cccCcceeEEECCCCccHHHHHHHHhcccC--CceEEechHHHHHHHhhhHHHHHHHHHHHHH---hcCCeEEEehhhhh
Confidence 566789999999999999999999999988 59999999999999999987 8999999995 56999999999999
Q ss_pred ccccccCCC-CCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 84 LTPVETENP-MGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 84 i~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
|.-.|.-+. .+..+..++.++..|+ |+..+..|+.+++||++..++++.+ .||..+
T Consensus 222 iaLdRryQelRGDVsEiVNALLTelD---------------------gi~eneGVvtIaaTN~p~~LD~aiR--sRFEeE 278 (368)
T COG1223 222 IALDRRYQELRGDVSEIVNALLTELD---------------------GIKENEGVVTIAATNRPELLDPAIR--SRFEEE 278 (368)
T ss_pred hhhhhhHHHhcccHHHHHHHHHHhcc---------------------CcccCCceEEEeecCChhhcCHHHH--hhhhhe
Confidence 987654433 3344556666655544 4445555555566668888888764 489987
Q ss_pred ceeeccCCCccHHHHHHHHhhc----CH---hhHHHhhcCCCC--hHHHHHHH
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDV----TL---HDLDMANAKPQG--GQDILSMV 206 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~----~~---~dl~~~a~~~~g--gadi~~l~ 206 (409)
+++.+|-. +.|.++++.. .+ .+++.+++++.| |.||..=+
T Consensus 279 IEF~LP~~----eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekv 327 (368)
T COG1223 279 IEFKLPND----EERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKV 327 (368)
T ss_pred eeeeCCCh----HHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHH
Confidence 76665544 4577777643 22 268899999999 99998654
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.7e-24 Score=231.74 Aligned_cols=179 Identities=22% Similarity=0.322 Sum_probs=142.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+|+|+|||||||||||++|+++|++++. +|+.++++++.++|+|+++ .++++|+.|. ...||||||||+|+
T Consensus 483 g~~~~~giLL~GppGtGKT~lakalA~e~~~--~fi~v~~~~l~~~~vGese~~i~~~f~~A~---~~~p~iifiDEid~ 557 (733)
T TIGR01243 483 GIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NFIAVRGPEILSKWVGESEKAIREIFRKAR---QAAPAIIFFDEIDA 557 (733)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CEEEEehHHHhhcccCcHHHHHHHHHHHHH---hcCCEEEEEEChhh
Confidence 6677899999999999999999999999986 9999999999999999999 8999999995 46899999999999
Q ss_pred ccccccCCCCCC-ccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 84 LTPVETENPMGG-YGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 84 i~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
+++.|+.....+ ..+.+++++..|+ ++.....++|++|||+++.++++..+++|||.
T Consensus 558 l~~~r~~~~~~~~~~~~~~~lL~~ld---------------------g~~~~~~v~vI~aTn~~~~ld~allRpgRfd~- 615 (733)
T TIGR01243 558 IAPARGARFDTSVTDRIVNQLLTEMD---------------------GIQELSNVVVIAATNRPDILDPALLRPGRFDR- 615 (733)
T ss_pred hhccCCCCCCccHHHHHHHHHHHHhh---------------------cccCCCCEEEEEeCCChhhCCHhhcCCCccce-
Confidence 999876543322 2344555544433 23333445566666799999999999999995
Q ss_pred ceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.+.+|.|+...|..||+.... .+++.+|..++| |+||.++|+.+....
T Consensus 616 ---~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a 672 (733)
T TIGR01243 616 ---LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAA 672 (733)
T ss_pred ---EEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 455556678889888865432 268899999999 999999997665443
No 30
>KOG0652|consensus
Probab=99.91 E-value=8.8e-25 Score=196.60 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=145.6
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHH-HHHHHHHHHhhhhcccceEEeccc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEV-LMENFRRAIGLRIKESKEVYEGEV 81 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~-l~~~f~~a~~~~~~~~~ii~iDEi 81 (409)
+-|..||+|+|+|||||||||.+|+|.|...+. .|+.+-++.+...++|...+ ++.+|.-|. .++|+||||||+
T Consensus 199 ~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--TFLKLAgPQLVQMfIGdGAkLVRDAFaLAK---EkaP~IIFIDEl 273 (424)
T KOG0652|consen 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQMFIGDGAKLVRDAFALAK---EKAPTIIFIDEL 273 (424)
T ss_pred hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--hHHHhcchHHHhhhhcchHHHHHHHHHHhh---ccCCeEEEEech
Confidence 457889999999999999999999999999987 99999999999999999885 588888774 689999999999
Q ss_pred ccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccc
Q psy2778 82 TELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 82 d~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
|+|..+|.++...+.....+.++-.|.+.| |+.+.+.+-|+|+||+++.++|+..+.||+|+
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQLD------------------GFss~~~vKviAATNRvDiLDPALlRSGRLDR 335 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQLD------------------GFSSDDRVKVIAATNRVDILDPALLRSGRLDR 335 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhc------------------CCCCccceEEEeecccccccCHHHhhcccccc
Confidence 999999998876666655555554444444 44556666666777799999999999999996
Q ss_pred cceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHH
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVG 207 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~ 207 (409)
. |.+|-|....|..|+|.++.. ..+.+|..|++ ||.++++|-
T Consensus 336 K----IEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 336 K----IEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred c----ccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeeh
Confidence 5 445555666688888876542 47899999999 999999883
No 31
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.91 E-value=6.4e-24 Score=210.18 Aligned_cols=180 Identities=22% Similarity=0.339 Sum_probs=135.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+|+|||||||||||++|+++|++++. +|+.+.++++.++|+|+++ .+++.|..|. ..+|+||||||+|
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~---~~~P~ILfIDEID 248 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TFIRVVGSEFVQKYLGEGPRMVRDVFRLAR---ENAPSIIFIDEVD 248 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CEEEEehHHHHHHhcchhHHHHHHHHHHHH---hcCCeEEEEECHh
Confidence 36678999999999999999999999999986 9999999999999999988 7889998885 4689999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhcccc-CcEEEEEcccccccccCccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEV-GDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~-~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
.+++++.+...+. .+.+...+..+ +..+ +++.. ..+++| ++|++++.++++..+++|||.
T Consensus 249 ~i~~~r~~~~~~~-d~~~~r~l~~L---------------L~~l--d~~~~~~~v~VI-~aTN~~d~LDpAllR~GRfd~ 309 (398)
T PTZ00454 249 SIATKRFDAQTGA-DREVQRILLEL---------------LNQM--DGFDQTTNVKVI-MATNRADTLDPALLRPGRLDR 309 (398)
T ss_pred hhccccccccCCc-cHHHHHHHHHH---------------HHHh--hccCCCCCEEEE-EecCCchhCCHHHcCCCcccE
Confidence 9998875443222 22222221111 1111 12222 344555 455689999999999999995
Q ss_pred cceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHHh
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLIK 211 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~~ 211 (409)
.+.+|.|+...|..|++.+... +++.++..++| |+||.++|..+..
T Consensus 310 ----~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 310 ----KIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGM 364 (398)
T ss_pred ----EEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4455555777788888866432 67889999999 9999999977653
No 32
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=2.7e-23 Score=206.92 Aligned_cols=122 Identities=25% Similarity=0.302 Sum_probs=108.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCce-EEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|+++.+ ++++|++.||++...+ +|++|+. ++.+|+.++|||..+.|++++.
T Consensus 123 KV~IIDEah~Ls~~-------A~NALLKtLEEPp~~viFILaTte-------------~~kI~~TI~SRCq~~~f~~ls~ 182 (484)
T PRK14956 123 KVYIIDEVHMLTDQ-------SFNALLKTLEEPPAHIVFILATTE-------------FHKIPETILSRCQDFIFKKVPL 182 (484)
T ss_pred EEEEEechhhcCHH-------HHHHHHHHhhcCCCceEEEeecCC-------------hhhccHHHHhhhheeeecCCCH
Confidence 69999999999999 9999999999987655 5667642 6789999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.++.+++++|+.++++++..|++.| +||+|.|+++|+++...+ ...|+.+.|.++++.
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S-~Gd~RdAL~lLeq~i~~~----~~~it~~~V~~~lg~ 245 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKG-DGSVRDMLSFMEQAIVFT----DSKLTGVKIRKMIGY 245 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CChHHHHHHHHHHHHHhC----CCCcCHHHHHHHhCC
Confidence 999999999999999999999999999999 999999999999887543 235899999887764
No 33
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.8e-24 Score=214.47 Aligned_cols=123 Identities=26% Similarity=0.373 Sum_probs=114.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|||+.+ +|++|+|++|+|.+ .+||||| | +++.+|..++|||+.+.|+.++.
T Consensus 121 KVyiIDEvHMLS~~-------afNALLKTLEEPP~hV~FIlAT---------T----e~~Kip~TIlSRcq~f~fkri~~ 180 (515)
T COG2812 121 KVYIIDEVHMLSKQ-------AFNALLKTLEEPPSHVKFILAT---------T----EPQKIPNTILSRCQRFDFKRLDL 180 (515)
T ss_pred eEEEEecHHhhhHH-------HHHHHhcccccCccCeEEEEec---------C----CcCcCchhhhhccccccccCCCH
Confidence 79999999999999 99999999999988 6688888 3 38999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
++|...|+.++.+++++++++++..|++.| +|++|.|+++|+++..++. +.|+.+.|..++++-
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a-~Gs~RDalslLDq~i~~~~----~~It~~~v~~~lG~~ 244 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARAA-EGSLRDALSLLDQAIAFGE----GEITLESVRDMLGLT 244 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHc-CCChhhHHHHHHHHHHccC----CcccHHHHHHHhCCC
Confidence 999999999999999999999999999999 9999999999999987642 579999999888763
No 34
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.91 E-value=9.2e-24 Score=231.35 Aligned_cols=197 Identities=11% Similarity=0.128 Sum_probs=137.5
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhh-------------------------------
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSE------------------------------- 51 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~------------------------------- 51 (409)
+.|..+|+||||+||||||||.+|+|+|.+.+ +||+.++++++.+.+
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~--VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSY--VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcC--CceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 45777899999999999999999999999998 599999999998654
Q ss_pred ----------hhhhH---HHHHHHHHHHhhhhcccceEEecccccccccccCCCCCCccchhhhHHHhhhcccCcccccC
Q psy2778 52 ----------IKKTE---VLMENFRRAIGLRIKESKEVYEGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKL 118 (409)
Q Consensus 52 ----------~~~~e---~l~~~f~~a~~~~~~~~~ii~iDEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 118 (409)
++..+ +++.+|+.|. ..+||||||||||++..+.. ....+++++..|++..+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelAR---k~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~------ 1766 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAK---AMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCE------ 1766 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHH---HCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccc------
Confidence 12222 3788899995 46999999999999976521 11235555554443221
Q ss_pred ChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccceeeccCCCccHHHHHHHHhh------cCH----hh
Q psy2778 119 DPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAEEYVPLPKGDVHKKKEVIQD------VTL----HD 188 (409)
Q Consensus 119 ~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~~~i~~p~~~~~~r~~il~~------~~~----~d 188 (409)
......|+|+|+|++++.+|++..+|||||+.+ .|+.| +...|++++.. +.. .+
T Consensus 1767 ------------~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I--~Ir~P--d~p~R~kiL~ILl~tkg~~L~~~~vd 1830 (2281)
T CHL00206 1767 ------------RCSTRNILVIASTHIPQKVDPALIAPNKLNTCI--KIRRL--LIPQQRKHFFTLSYTRGFHLEKKMFH 1830 (2281)
T ss_pred ------------cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEE--EeCCC--CchhHHHHHHHHHhhcCCCCCccccc
Confidence 011233455555669999999999999999753 33333 44345544432 111 25
Q ss_pred HHHhhcCCCC--hHHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHH
Q psy2778 189 LDMANAKPQG--GQDILSMVGQLIKSKK-----TEITDKLRKEINKVVNKY 232 (409)
Q Consensus 189 l~~~a~~~~g--gadi~~l~~~~~~~~~-----~~~~~~~~~~i~~~~~~~ 232 (409)
++.+|..|.| |||+.++|+.|+.-.. .-..+.++.++.+++...
T Consensus 1831 l~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1831 TNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhh
Confidence 8899999999 9999999977653321 223456788888776443
No 35
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.6e-23 Score=189.69 Aligned_cols=137 Identities=27% Similarity=0.303 Sum_probs=113.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcc---------eeeecccccCCCCCCCchhhhhhh-h
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRG---------RCLVRGTDDIISPHGIPLDLLDRL-L 312 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~r~-~ 312 (409)
.|+||||+|.+++. ....|+.+||+..-.++|..-... .++++.| | -.-.+...|++|+ +
T Consensus 105 DVLFIDEIHrl~~~-------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT-T--r~G~lt~PLrdRFGi 174 (332)
T COG2255 105 DVLFIDEIHRLSPA-------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT-T--RAGMLTNPLRDRFGI 174 (332)
T ss_pred CeEEEehhhhcChh-------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec-c--ccccccchhHHhcCC
Confidence 39999999999998 889999999997666655532211 1223333 1 1123466699999 7
Q ss_pred eeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 313 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 313 ~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
+.+++.|+.+|+.+|+++-+...++++++++...|++.| +|.||.|+.||++...+|+.++...|+.+.+.+++.++
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS-RGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999 99999999999999999999999999999998888654
No 36
>KOG0737|consensus
Probab=99.91 E-value=3.6e-24 Score=202.01 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=135.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHH-HHHHHHHHhhhhcccceEEeccccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVL-MENFRRAIGLRIKESKEVYEGEVTELT 85 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l-~~~f~~a~~~~~~~~~ii~iDEid~i~ 85 (409)
.|++|||||||||||||.+|+|+|++.|+ .|+.++.+.+.++|.|+.+++ ..+|.-|. ..+|+||||||+|++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga--~fInv~~s~lt~KWfgE~eKlv~AvFslAs---Kl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEAGA--NFINVSVSNLTSKWFGEAQKLVKAVFSLAS---KLQPSIIFIDEVDSFL 199 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHcCC--CcceeeccccchhhHHHHHHHHHHHHhhhh---hcCcceeehhhHHHHH
Confidence 47899999999999999999999999997 999999999999999999964 66777775 4599999999999999
Q ss_pred ccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccccee
Q psy2778 86 PVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAEE 165 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~~ 165 (409)
+.|..+.+......-++++..++... + .....|+|.++||++..++.+.. +|+... .
T Consensus 200 ~~R~s~dHEa~a~mK~eFM~~WDGl~---s----------------~~~~rVlVlgATNRP~DlDeAii--RR~p~r--f 256 (386)
T KOG0737|consen 200 GQRRSTDHEATAMMKNEFMALWDGLS---S----------------KDSERVLVLGATNRPFDLDEAII--RRLPRR--F 256 (386)
T ss_pred hhcccchHHHHHHHHHHHHHHhcccc---C----------------CCCceEEEEeCCCCCccHHHHHH--HhCcce--e
Confidence 98866666666666666655433322 1 12234677777778888876552 244432 4
Q ss_pred eccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 166 YVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 166 ~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.|++| +...|..|++.+... |++.+|..|+| |+|++++|..+...+
T Consensus 257 ~V~lP--~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ 311 (386)
T KOG0737|consen 257 HVGLP--DAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRP 311 (386)
T ss_pred eeCCC--chhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhH
Confidence 56666 466788887765321 68899999999 999999997765444
No 37
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.9e-24 Score=213.74 Aligned_cols=196 Identities=19% Similarity=0.340 Sum_probs=151.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|-.-|+|+||+||||||||++|+|+|.+.+ +||+.+|+|++.-.++|... ++++.|.+|. ..+||||||||+|+
T Consensus 179 GakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPFf~iSGS~FVemfVGvGAsRVRdLF~qAk---k~aP~IIFIDEiDA 253 (596)
T COG0465 179 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVEMFVGVGASRVRDLFEQAK---KNAPCIIFIDEIDA 253 (596)
T ss_pred ccccccceeEecCCCCCcHHHHHHHhcccC--CCceeccchhhhhhhcCCCcHHHHHHHHHhh---ccCCCeEEEehhhh
Confidence 444579999999999999999999999988 69999999999999999877 8999999995 57899999999999
Q ss_pred ccccccCCCCCCc---cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 84 LTPVETENPMGGY---GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 84 i~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+...|.....++. +.++++++..++... ..+.|.++++||+++.++++..|++|||
T Consensus 254 vGr~Rg~g~GggnderEQTLNQlLvEmDGF~---------------------~~~gviviaaTNRpdVlD~ALlRpgRFD 312 (596)
T COG0465 254 VGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---------------------GNEGVIVIAATNRPDVLDPALLRPGRFD 312 (596)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhhhccCC---------------------CCCceEEEecCCCcccchHhhcCCCCcc
Confidence 9988865533333 247777776665443 3344555566679999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHH--Hhhh--hhhh-hHHHHHHHH
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQL--IKSK--KTEI-TDKLRKEIN 226 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~--~~~~--~~~~-~~~~~~~i~ 226 (409)
+ .|.++.||.+.|.+|++.+... ++..+|..|.| |||+.++++.+ +..+ ...+ ...+.+.++
T Consensus 313 R----qI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 313 R----QILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred e----eeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHH
Confidence 5 5566666899999999855432 57789999999 99999999432 2222 1122 234556666
Q ss_pred HHHH
Q psy2778 227 KVVN 230 (409)
Q Consensus 227 ~~~~ 230 (409)
+++.
T Consensus 389 rv~~ 392 (596)
T COG0465 389 RVIA 392 (596)
T ss_pred HHhc
Confidence 5444
No 38
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.90 E-value=2.2e-23 Score=207.06 Aligned_cols=179 Identities=22% Similarity=0.296 Sum_probs=134.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+|+++|||||||||||++|+++|++++. +|+.++++++.+.|+|+.+ .++++|..+. ..+|++|||||+|.
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~---~~~p~IlfiDEiD~ 235 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFIRVVGSELVQKFIGEGARLVRELFELAR---EKAPSIIFIDEIDA 235 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHhCC--CEEEeehHHHhHhhccchHHHHHHHHHHHH---hcCCeEEEEechhh
Confidence 5677899999999999999999999999986 8999999999999999988 6788898885 46899999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+++++.+...++.......+...+...+ ++.....+.|++|++.++.++++..+++|||.
T Consensus 236 l~~~r~~~~~~~~~~~~~~l~~lL~~ld------------------~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~-- 295 (389)
T PRK03992 236 IAAKRTDSGTSGDREVQRTLMQLLAEMD------------------GFDPRGNVKIIAATNRIDILDPAILRPGRFDR-- 295 (389)
T ss_pred hhcccccCCCCccHHHHHHHHHHHHhcc------------------ccCCCCCEEEEEecCChhhCCHHHcCCccCce--
Confidence 9988765443322221111111111111 22222234445555688999999999999995
Q ss_pred eeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
.+.+|.|+...|..+++.+.. -+++.++..++| |+|+.++|..+.
T Consensus 296 --~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 296 --IIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred --EEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456666678889998886532 258889999999 999999997654
No 39
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=1.4e-22 Score=208.84 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=109.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+|+.+ +++.|+|+||++.. ..||++|+. ++.++..++|||+.|+|++++.
T Consensus 121 KVIIIDEah~LT~~-------A~NALLKtLEEPP~~v~FILaTtd-------------~~KIp~TIrSRCq~f~Fk~Ls~ 180 (830)
T PRK07003 121 KVYMIDEVHMLTNH-------AFNAMLKTLEEPPPHVKFILATTD-------------PQKIPVTVLSRCLQFNLKQMPA 180 (830)
T ss_pred eEEEEeChhhCCHH-------HHHHHHHHHHhcCCCeEEEEEECC-------------hhhccchhhhheEEEecCCcCH
Confidence 69999999999999 99999999999865 567777753 5678888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
+++.+.|+.++.+++++++++++..|++.+ +||+|.|+++|+++..++ ...|+.++|..+++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A-~GsmRdALsLLdQAia~~----~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA-QGSMRDALSLTDQAIAYS----ANEVTETAVSGMLGAL 244 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCcCHHHHHHHhCCC
Confidence 999999999999999999999999999999 999999999999887653 2458888888887754
No 40
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.90 E-value=6.1e-23 Score=204.55 Aligned_cols=177 Identities=23% Similarity=0.307 Sum_probs=133.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+|+++|||||||||||++|+++|++++. +|+.++++++.++|.|+.+ .+++.|+.|. ...|+||||||+|.
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~---~~~P~ILfIDEID~ 287 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETSA--TFLRVVGSELIQKYLGDGPKLVRELFRVAE---ENAPSIVFIDEIDA 287 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CEEEEecchhhhhhcchHHHHHHHHHHHHH---hCCCcEEeHHHHHH
Confidence 5678899999999999999999999999986 8999999999999999988 6788998885 35899999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccc-cCcEEEEEcccccccccCcccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVE-VGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~-~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
+..++.....++.......++..|...+ ++. .+++.+|++| +++..++++..+++|||+
T Consensus 288 l~~kR~~~~sgg~~e~qr~ll~LL~~Ld------------------g~~~~~~V~VI~AT-Nr~d~LDpaLlRpGRfd~- 347 (438)
T PTZ00361 288 IGTKRYDATSGGEKEIQRTMLELLNQLD------------------GFDSRGDVKVIMAT-NRIESLDPALIRPGRIDR- 347 (438)
T ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHh------------------hhcccCCeEEEEec-CChHHhhHHhccCCeeEE-
Confidence 9987765443332222222211111111 222 3355555554 588999999999999995
Q ss_pred ceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHH
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQL 209 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~ 209 (409)
.|.+|.|+...|..|++.... -+++.++..++| |+||.++|..+
T Consensus 348 ---~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA 400 (438)
T PTZ00361 348 ---KIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEA 400 (438)
T ss_pred ---EEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 455666677788888886532 157889999999 99999999654
No 41
>KOG0740|consensus
Probab=99.89 E-value=2e-23 Score=203.66 Aligned_cols=183 Identities=18% Similarity=0.290 Sum_probs=147.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
+.+.+++||+||||+|||+|++|+|.+.+. .|+.++++.+.++|+|++| .++.+|.-|. ..+|+|+||||+|++
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE~~a--tff~iSassLtsK~~Ge~eK~vralf~vAr---~~qPsvifidEidsl 257 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATESGA--TFFNISASSLTSKYVGESEKLVRALFKVAR---SLQPSVIFIDEIDSL 257 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhhhcc--eEeeccHHHhhhhccChHHHHHHHHHHHHH---hcCCeEEEechhHHH
Confidence 456789999999999999999999999997 9999999999999999999 5788888885 469999999999999
Q ss_pred cccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccce
Q psy2778 85 TPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAE 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~ 164 (409)
+.+|.+.......+...++++++.... ....|.|++.++||.++.++.+..+ ||-
T Consensus 258 ls~Rs~~e~e~srr~ktefLiq~~~~~-------------------s~~~drvlvigaTN~P~e~Dea~~R--rf~---- 312 (428)
T KOG0740|consen 258 LSKRSDNEHESSRRLKTEFLLQFDGKN-------------------SAPDDRVLVIGATNRPWELDEAARR--RFV---- 312 (428)
T ss_pred HhhcCCcccccchhhhhHHHhhhcccc-------------------CCCCCeEEEEecCCCchHHHHHHHH--Hhh----
Confidence 999987777777777666655543322 3455688888888899999887766 776
Q ss_pred eeccCCCccHHHHHHHHhhc--------CHhhHHHhhcCCCC--hHHHHHHHHHHHhhhhhhhh
Q psy2778 165 EYVPLPKGDVHKKKEVIQDV--------TLHDLDMANAKPQG--GQDILSMVGQLIKSKKTEIT 218 (409)
Q Consensus 165 ~~i~~p~~~~~~r~~il~~~--------~~~dl~~~a~~~~g--gadi~~l~~~~~~~~~~~~~ 218 (409)
..+.+|.|+...|..+|... +..+++.++..|+| |+||.++|..+..+...+..
T Consensus 313 kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~ 376 (428)
T KOG0740|consen 313 KRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELG 376 (428)
T ss_pred ceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcc
Confidence 33445555777788877543 23478999999999 99999999998877654433
No 42
>KOG0741|consensus
Probab=99.89 E-value=2.6e-23 Score=202.73 Aligned_cols=179 Identities=20% Similarity=0.223 Sum_probs=138.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhh-hhc----ccceEEecccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGL-RIK----ESKEVYEGEVT 82 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~-~~~----~~~ii~iDEid 82 (409)
-+|+|||||||||||.+||.|.+.|+++ +.-.+|++++.++|+|++| +++++|..|... +.. .-.||++||+|
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNAr-ePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAR-EPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCC-CCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 3799999999999999999999999985 6778999999999999999 999999988632 111 22599999999
Q ss_pred cccccccCCCC-CCc-cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 83 ELTPVETENPM-GGY-GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 83 ~i~~~~~~~~~-~~~-~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+||..|++... .+. ...++|++..++ |++.=.-|++++.||+.+.++.++.|||||.
T Consensus 335 AICKqRGS~~g~TGVhD~VVNQLLsKmD---------------------GVeqLNNILVIGMTNR~DlIDEALLRPGRlE 393 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDTVVNQLLSKMD---------------------GVEQLNNILVIGMTNRKDLIDEALLRPGRLE 393 (744)
T ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhcc---------------------cHHhhhcEEEEeccCchhhHHHHhcCCCceE
Confidence 99998876542 222 345566644433 3443344555555569999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHh-----------hHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLH-----------DLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~-----------dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
..+++.+|...+ |.+|++.+|.. |+..+|..|.+ ||++..++.++.+..
T Consensus 394 VqmEIsLPDE~g----RlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A 455 (744)
T KOG0741|consen 394 VQMEISLPDEKG----RLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFA 455 (744)
T ss_pred EEEEEeCCCccC----ceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 777776666655 77777666532 68899999999 999999998876553
No 43
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=7.9e-22 Score=201.39 Aligned_cols=123 Identities=28% Similarity=0.429 Sum_probs=109.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|+|+.+ ++++|++.||++... .||++|+. ++.+|..++|||.++.|++++.
T Consensus 120 KV~IIDEVh~LS~~-------A~NALLKtLEEPP~~v~FILaTtd-------------~~kIp~TIlSRCq~feFkpLs~ 179 (702)
T PRK14960 120 KVYLIDEVHMLSTH-------SFNALLKTLEEPPEHVKFLFATTD-------------PQKLPITVISRCLQFTLRPLAV 179 (702)
T ss_pred EEEEEechHhcCHH-------HHHHHHHHHhcCCCCcEEEEEECC-------------hHhhhHHHHHhhheeeccCCCH
Confidence 69999999999999 999999999998663 57777642 4677888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
+++.+.++.+++++|+.++++++.+|++.| +||+|.|+++|+.+..+ +.+.|+.++|..+++..
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~S-~GdLRdALnLLDQaIay----g~g~IT~edV~~lLG~~ 243 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAESA-QGSLRDALSLTDQAIAY----GQGAVHHQDVKEMLGLI 243 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHhccC
Confidence 999999999999999999999999999999 99999999999987654 45679999998887743
No 44
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=3.1e-22 Score=204.10 Aligned_cols=124 Identities=24% Similarity=0.307 Sum_probs=110.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ ++++|+|+||++.. ..||++|+. ++.+|..++|||..++|++++.
T Consensus 121 kV~iIDE~~~ls~~-------a~naLLk~LEepp~~~~fIlattd-------------~~kl~~tI~SRc~~~~f~~l~~ 180 (509)
T PRK14958 121 KVYLIDEVHMLSGH-------SFNALLKTLEEPPSHVKFILATTD-------------HHKLPVTVLSRCLQFHLAQLPP 180 (509)
T ss_pred EEEEEEChHhcCHH-------HHHHHHHHHhccCCCeEEEEEECC-------------hHhchHHHHHHhhhhhcCCCCH
Confidence 69999999999999 99999999999866 557777742 5678888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
+++.+.++.+++++|++++++++.+|++.+ +||+|.|+++|+.+..+ +.+.|+.++|..+++...
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~lg~~~ 245 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA-NGSVRDALSLLDQSIAY----GNGKVLIADVKTMLGTIE 245 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCCC
Confidence 999999999999999999999999999999 99999999999988655 346799999999887643
No 45
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=4.9e-22 Score=202.43 Aligned_cols=124 Identities=23% Similarity=0.301 Sum_probs=110.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ +++.|+|+||++.. .+||++|+. ++.++..++|||+.++|++++.
T Consensus 126 KViIIDEah~Ls~~-------AaNALLKTLEEPP~~v~FILaTte-------------p~kLlpTIrSRCq~f~f~~ls~ 185 (700)
T PRK12323 126 KVYMIDEVHMLTNH-------AFNAMLKTLEEPPEHVKFILATTD-------------PQKIPVTVLSRCLQFNLKQMPP 185 (700)
T ss_pred eEEEEEChHhcCHH-------HHHHHHHhhccCCCCceEEEEeCC-------------hHhhhhHHHHHHHhcccCCCCh
Confidence 69999999999999 99999999999865 668888853 5788899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
+++.+.++.++.++++.+++++++.|++.+ +||+|.|+++++.+..+ +...|+.++|..+++...
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~~A-~Gs~RdALsLLdQaia~----~~~~It~~~V~~~LG~~d 250 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQAA-QGSMRDALSLTDQAIAY----SAGNVSEEAVRGMLGAID 250 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----ccCCcCHHHHHHHhCCCC
Confidence 999999999999999999999999999999 99999999999987654 234688888888877655
No 46
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.89 E-value=1.6e-22 Score=207.46 Aligned_cols=176 Identities=19% Similarity=0.299 Sum_probs=136.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+|+|+|||||||||||++|+++|++++. +|+.++++++.+.+++.++ .+++.|+.+. ..+|+||||||+|.
T Consensus 84 g~~~~~giLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~---~~~p~Il~iDEid~ 158 (495)
T TIGR01241 84 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PFFSISGSDFVEMFVGVGASRVRDLFEQAK---KNAPCIIFIDEIDA 158 (495)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--CeeeccHHHHHHHHhcccHHHHHHHHHHHH---hcCCCEEEEechhh
Confidence 5566799999999999999999999999985 9999999999999999887 8999999985 46899999999999
Q ss_pred ccccccCCCCC---CccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 84 LTPVETENPMG---GYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 84 i~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+++++.....+ ...+.+++++..++ ++.....++|++|||++..++++..+++|||
T Consensus 159 l~~~r~~~~~~~~~~~~~~~~~lL~~~d---------------------~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd 217 (495)
T TIGR01241 159 VGRQRGAGLGGGNDEREQTLNQLLVEMD---------------------GFGTNTGVIVIAATNRPDVLDPALLRPGRFD 217 (495)
T ss_pred hhhccccCcCCccHHHHHHHHHHHhhhc---------------------cccCCCCeEEEEecCChhhcCHHHhcCCcce
Confidence 99887653211 11233444433332 2222233555566679999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
. .+.+|.|+...|.++++.+.. .++..++..+.| |+|+.++|+.+.
T Consensus 218 ~----~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 218 R----QVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred E----EEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5 566666678889888876532 257899999999 999999997653
No 47
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=1.3e-21 Score=202.40 Aligned_cols=122 Identities=23% Similarity=0.364 Sum_probs=107.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ +++.|+|+||++... +||++|+. ++.++..++|||+.++|++++.
T Consensus 121 KV~IIDEah~Ls~~-------a~NALLKtLEEPp~~v~FIL~Tt~-------------~~kLl~TI~SRC~~~~f~~Ls~ 180 (647)
T PRK07994 121 KVYLIDEVHMLSRH-------SFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILSRCLQFHLKALDV 180 (647)
T ss_pred EEEEEechHhCCHH-------HHHHHHHHHHcCCCCeEEEEecCC-------------ccccchHHHhhheEeeCCCCCH
Confidence 69999999999999 999999999998775 47777642 5688899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.|+.++.++++.++++++..|++.| +||+|.|+++++.+..+ +...|+.++|..+++.
T Consensus 181 ~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s-~Gs~R~Al~lldqaia~----~~~~it~~~v~~~lg~ 243 (647)
T PRK07994 181 EQIRQQLEHILQAEQIPFEPRALQLLARAA-DGSMRDALSLTDQAIAS----GNGQVTTDDVSAMLGT 243 (647)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 999999999999999999999999999999 99999999999987654 3345888888877763
No 48
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=1.2e-21 Score=205.36 Aligned_cols=122 Identities=24% Similarity=0.357 Sum_probs=106.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCce-EEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ +++.|+|+||++...+ ||++|+. ++.++..++|||.+++|++++.
T Consensus 121 KViIIDEAh~LT~e-------AqNALLKtLEEPP~~vrFILaTTe-------------~~kLl~TIlSRCq~f~fkpLs~ 180 (944)
T PRK14949 121 KVYLIDEVHMLSRS-------SFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTVLSRCLQFNLKSLTQ 180 (944)
T ss_pred EEEEEechHhcCHH-------HHHHHHHHHhccCCCeEEEEECCC-------------chhchHHHHHhheEEeCCCCCH
Confidence 69999999999999 9999999999987754 6666632 4568889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.|+.++.++++.++++++..|++.| +|++|.|+++|+.+..+ +...|+.+.|.++++.
T Consensus 181 eEI~~~L~~il~~EgI~~edeAL~lIA~~S-~Gd~R~ALnLLdQala~----~~~~It~~~V~~llG~ 243 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPFEAEALTLLAKAA-NGSMRDALSLTDQAIAF----GGGQVMLTQVQTMLGS 243 (944)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCcccHHHHHHHhCC
Confidence 999999999999999999999999999999 99999999999987743 3345777777766654
No 49
>KOG0651|consensus
Probab=99.88 E-value=7.2e-23 Score=188.47 Aligned_cols=178 Identities=19% Similarity=0.223 Sum_probs=139.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..||.+++||||||||||.+|+++|..++. .|+.++++.+.++|.|++. -+++.|+.|. ...||+||+||+|+
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~--nfl~v~ss~lv~kyiGEsaRlIRemf~yA~---~~~pciifmdeiDA 236 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGV--NFLKVVSSALVDKYIGESARLIRDMFRYAR---EVIPCIIFMDEIDA 236 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCC--ceEEeeHhhhhhhhcccHHHHHHHHHHHHh---hhCceEEeehhhhh
Confidence 7788999999999999999999999999995 9999999999999999999 5699999995 56899999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+.+.+............++++..++++++.. ..+.+-+|.|| |++.-+++++.|+||.|+
T Consensus 237 igGRr~se~Ts~dreiqrTLMeLlnqmdgfd-----------------~l~rVk~Imat-NrpdtLdpaLlRpGRldr-- 296 (388)
T KOG0651|consen 237 IGGRRFSEGTSSDREIQRTLMELLNQMDGFD-----------------TLHRVKTIMAT-NRPDTLDPALLRPGRLDR-- 296 (388)
T ss_pred hccEEeccccchhHHHHHHHHHHHHhhccch-----------------hcccccEEEec-CCccccchhhcCCccccc--
Confidence 9998865544444445555555555555432 13445555555 599999999999999995
Q ss_pred eeeccCCCccHHHHHHHHhhcCH----h---hHHHhhcCCCC--hHHHHHHHHHH
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTL----H---DLDMANAKPQG--GQDILSMVGQL 209 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~----~---dl~~~a~~~~g--gadi~~l~~~~ 209 (409)
.+..|-+....|..+++.... + +-+.+.+-.+| |+|+.+.|..+
T Consensus 297 --k~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEa 349 (388)
T KOG0651|consen 297 --KVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEA 349 (388)
T ss_pred --eeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccc
Confidence 555666688888888875543 2 45566666777 99988888554
No 50
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=2.3e-21 Score=195.18 Aligned_cols=123 Identities=25% Similarity=0.321 Sum_probs=109.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|+++.+ ++++|+|.+|++.. .++|++|+. ++.++..++|||..+.|++++.
T Consensus 118 KVvIIDEah~Ls~~-------A~NaLLK~LEePp~~v~fIlatte-------------~~Kl~~tI~SRc~~~~f~~l~~ 177 (491)
T PRK14964 118 KVYIIDEVHMLSNS-------AFNALLKTLEEPAPHVKFILATTE-------------VKKIPVTIISRCQRFDLQKIPT 177 (491)
T ss_pred eEEEEeChHhCCHH-------HHHHHHHHHhCCCCCeEEEEEeCC-------------hHHHHHHHHHhheeeecccccH
Confidence 69999999999999 99999999999866 457777742 4568889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
+++.+.+..+++++|+.++++++++|++.+ +||+|.|+++|+.+..++. +.||.++|+.+++.-
T Consensus 178 ~el~~~L~~ia~~Egi~i~~eAL~lIa~~s-~GslR~alslLdqli~y~~----~~It~e~V~~llg~~ 241 (491)
T PRK14964 178 DKLVEHLVDIAKKENIEHDEESLKLIAENS-SGSMRNALFLLEQAAIYSN----NKISEKSVRDLLGCV 241 (491)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHccC
Confidence 999999999999999999999999999999 9999999999999887642 479999999887643
No 51
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=2e-21 Score=197.02 Aligned_cols=128 Identities=27% Similarity=0.306 Sum_probs=111.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|+++.+ +++.|++.+|++... ++|++|+. ++.++..++|||..+.|.+++.
T Consensus 130 KVvIIDEa~~Ls~~-------a~naLLk~LEepp~~~vfI~aTte-------------~~kI~~tI~SRc~~~ef~~ls~ 189 (507)
T PRK06645 130 KIFIIDEVHMLSKG-------AFNALLKTLEEPPPHIIFIFATTE-------------VQKIPATIISRCQRYDLRRLSF 189 (507)
T ss_pred EEEEEEChhhcCHH-------HHHHHHHHHhhcCCCEEEEEEeCC-------------hHHhhHHHHhcceEEEccCCCH
Confidence 69999999999999 999999999998664 56777742 3568889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccC
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLD 392 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~ 392 (409)
+++.+.++.+++++|+.++++++++|++.+ +||+|.|+++|+.+..++..+ ...||.++|..+++.-.+
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~s-~GslR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~~~~ 258 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYKS-EGSARDAVSILDQAASMSAKS-DNIISPQVINQMLGLVDS 258 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCCCCH
Confidence 999999999999999999999999999999 999999999999998776422 246999999998876433
No 52
>KOG0732|consensus
Probab=99.87 E-value=2.3e-22 Score=212.20 Aligned_cols=177 Identities=25% Similarity=0.348 Sum_probs=143.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
+..||+|+|||||||||||+.|+++|..+ +.++.|..-++.+..++|+|+.| .++-.|+.|. ..+|+|||+||
T Consensus 295 ~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~---k~qPSIIffde 371 (1080)
T KOG0732|consen 295 NITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQ---KTQPSIIFFDE 371 (1080)
T ss_pred ccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHh---ccCceEEeccc
Confidence 56789999999999999999999999998 33578889999999999999999 7999999996 46999999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
||.+.+.|+..........++.++-.|+..+ ..|.+++|+|| |++..++++.+|+||||
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmdGld--------------------sRgqVvvigAT-nRpda~dpaLRRPgrfd 430 (1080)
T KOG0732|consen 372 IDGLAPVRSSKQEQIHASIVSTLLALMDGLD--------------------SRGQVVVIGAT-NRPDAIDPALRRPGRFD 430 (1080)
T ss_pred cccccccccchHHHhhhhHHHHHHHhccCCC--------------------CCCceEEEccc-CCccccchhhcCCcccc
Confidence 9999999976654455556666655555444 24566666555 59999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHh--------hHHHhhcCCCC--hHHHHHHHHHH
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLH--------DLDMANAKPQG--GQDILSMVGQL 209 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~--------dl~~~a~~~~g--gadi~~l~~~~ 209 (409)
++ .++|+| +...|..|+...+.+ -++.+|+.+.| |||++++|..+
T Consensus 431 re--f~f~lp--~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 431 RE--FYFPLP--DVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEA 485 (1080)
T ss_pred ee--EeeeCC--chHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHH
Confidence 76 677777 455577777665543 47899999999 99999999543
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=99.87 E-value=3.3e-21 Score=187.16 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=101.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.. ++++|++.||.+.. ..+++++|. ++.++++++|||.+++|++++.
T Consensus 101 kviiiDE~d~lt~~-------aq~aL~~~lE~~~~~t~~il~~n~-------------~~~i~~~L~SRc~~i~f~~l~~ 160 (319)
T PLN03025 101 KIVILDEADSMTSG-------AQQALRRTMEIYSNTTRFALACNT-------------SSKIIEPIQSRCAIVRFSRLSD 160 (319)
T ss_pred EEEEEechhhcCHH-------HHHHHHHHHhcccCCceEEEEeCC-------------ccccchhHHHhhhcccCCCCCH
Confidence 58999999999998 99999999998644 557777753 3456778999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
+++.+.++.+++++|+.++++++++|++.+ +||+|.|++.|+.+.. +...|+.++|.++.
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~-~gDlR~aln~Lq~~~~-----~~~~i~~~~v~~~~ 220 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA-DGDMRQALNNLQATHS-----GFGFVNQENVFKVC 220 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHc
Confidence 999999999999999999999999999999 9999999999995442 23468877777654
No 54
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.87 E-value=6.5e-22 Score=199.77 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=131.7
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCC--------ccEEEecCchhhhhhhhhhH-HHHHHHHHHHhh-hhccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNK--------VPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGL-RIKES 73 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~--------~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~-~~~~~ 73 (409)
.|..+|+|+|||||||||||++|+++|++++.. ..|+.++++++.++|+|+++ .++.+|..+... ....|
T Consensus 211 ~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p 290 (512)
T TIGR03689 211 YDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRP 290 (512)
T ss_pred ccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCC
Confidence 366788999999999999999999999998642 35778899999999999999 788999888643 23469
Q ss_pred ceEEecccccccccccCCCCCCcc-chhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcc
Q psy2778 74 KEVYEGEVTELTPVETENPMGGYG-KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRS 152 (409)
Q Consensus 74 ~ii~iDEid~i~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~ 152 (409)
+||||||+|.++++|.....+... ..+++++..|+ ++.....++|++|||++..++++
T Consensus 291 ~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD---------------------gl~~~~~ViVI~ATN~~d~LDpA 349 (512)
T TIGR03689 291 VIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD---------------------GVESLDNVIVIGASNREDMIDPA 349 (512)
T ss_pred ceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc---------------------ccccCCceEEEeccCChhhCCHh
Confidence 999999999999887543222222 22333333222 33332334455556799999999
Q ss_pred ccccccccccceeeccCCCccHHHHHHHHhhcCHh--hHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 153 DTFAAEFDLEAEEYVPLPKGDVHKKKEVIQDVTLH--DLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 153 ~~~~~rfd~~~~~~i~~p~~~~~~r~~il~~~~~~--dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
..|++|||. .|.+|.|+...|+.|++..... .++.......| ++++..+|+.+...
T Consensus 350 LlRpGRfD~----~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 350 ILRPGRLDV----KIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDH 409 (512)
T ss_pred hcCccccce----EEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999994 4566666778899988765332 12222333456 88999888776544
No 55
>CHL00176 ftsH cell division protein; Validated
Probab=99.86 E-value=2.1e-21 Score=202.03 Aligned_cols=196 Identities=18% Similarity=0.299 Sum_probs=140.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|...|+|+||+||||||||++|+++|++++. ||+.++++++...+++... .++..|+.+. ...||||||||+|.
T Consensus 212 g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p~i~is~s~f~~~~~g~~~~~vr~lF~~A~---~~~P~ILfIDEID~ 286 (638)
T CHL00176 212 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--PFFSISGSEFVEMFVGVGAARVRDLFKKAK---ENSPCIVFIDEIDA 286 (638)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CeeeccHHHHHHHhhhhhHHHHHHHHHHHh---cCCCcEEEEecchh
Confidence 4456789999999999999999999999985 9999999999988888766 7889999885 46899999999999
Q ss_pred ccccccCCCCCCcc---chhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 84 LTPVETENPMGGYG---KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 84 i~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+...|.....+... ..+++++..++ +......++++++++++..++++..+++|||
T Consensus 287 l~~~r~~~~~~~~~e~~~~L~~LL~~~d---------------------g~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd 345 (638)
T CHL00176 287 VGRQRGAGIGGGNDEREQTLNQLLTEMD---------------------GFKGNKGVIVIAATNRVDILDAALLRPGRFD 345 (638)
T ss_pred hhhcccCCCCCCcHHHHHHHHHHHhhhc---------------------cccCCCCeeEEEecCchHhhhhhhhccccCc
Confidence 98776543222211 22333322221 2222333445555568888999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhh--h--hh-hhhHHHHHHHH
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKS--K--KT-EITDKLRKEIN 226 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~--~--~~-~~~~~~~~~i~ 226 (409)
+ .+.++.|+...|..+++.+.. .++..+|..+.| |+|+.++|+.+... + .. -..+.+.+.++
T Consensus 346 ~----~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 346 R----QITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred e----EEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 6 444555577888888876532 257789999999 99999999765321 1 11 12345566665
Q ss_pred HHHH
Q psy2778 227 KVVN 230 (409)
Q Consensus 227 ~~~~ 230 (409)
+++.
T Consensus 422 rv~~ 425 (638)
T CHL00176 422 RVIA 425 (638)
T ss_pred HHHh
Confidence 5544
No 56
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=8.2e-21 Score=195.37 Aligned_cols=123 Identities=24% Similarity=0.292 Sum_probs=109.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|+++.+ +++.|+|.||++.. .++|++|+. ++.+++.++|||+.++|.+++.
T Consensus 120 KVvIIDEah~Lt~~-------A~NALLK~LEEpp~~~~fIL~tte-------------~~kll~TI~SRc~~~~F~~l~~ 179 (584)
T PRK14952 120 RIFIVDEAHMVTTA-------GFNALLKIVEEPPEHLIFIFATTE-------------PEKVLPTIRSRTHHYPFRLLPP 179 (584)
T ss_pred eEEEEECCCcCCHH-------HHHHHHHHHhcCCCCeEEEEEeCC-------------hHhhHHHHHHhceEEEeeCCCH
Confidence 69999999999999 99999999999876 557777742 4688899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.+..+++++|+.++++++.+|++.+ +||+|.|+++|+.+..++ +...|+.++|..+++.
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~~s-~GdlR~aln~Ldql~~~~---~~~~It~~~v~~llg~ 243 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIRAG-GGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLLGA 243 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHHCC
Confidence 999999999999999999999999999999 999999999999887653 2457888888887664
No 57
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=8.2e-21 Score=196.03 Aligned_cols=122 Identities=23% Similarity=0.334 Sum_probs=109.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ +++.|+|+||++.. .+||++|+. ++.++..++|||+.++|++++.
T Consensus 126 KV~IIDEvh~Ls~~-------a~NaLLKtLEEPP~~~~fIL~Ttd-------------~~kil~TIlSRc~~~~f~~Ls~ 185 (618)
T PRK14951 126 KVFMIDEVHMLTNT-------AFNAMLKTLEEPPEYLKFVLATTD-------------PQKVPVTVLSRCLQFNLRPMAP 185 (618)
T ss_pred eEEEEEChhhCCHH-------HHHHHHHhcccCCCCeEEEEEECC-------------chhhhHHHHHhceeeecCCCCH
Confidence 69999999999999 99999999999866 467777742 5678888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.++.+++++|+.++++++.+|++.+ +||+|.|+++|+.+..+ +...|+.++|+.+++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~Lg~ 248 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARAA-RGSMRDALSLTDQAIAF----GSGQLQEAAVRQMLGS 248 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcC
Confidence 999999999999999999999999999999 99999999999887765 3457999999888765
No 58
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.86 E-value=4.1e-21 Score=189.87 Aligned_cols=179 Identities=22% Similarity=0.298 Sum_probs=131.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+|+|+|||||||||||++|+++|++++. +|+.+.++++...++++.. .+++.|+.+. ...|++||+||+|.
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~---~~~p~il~iDEiD~ 226 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFIRVVGSELVRKYIGEGARLVREIFELAK---EKAPSIIFIDEIDA 226 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CEEecchHHHHHHhhhHHHHHHHHHHHHHH---hcCCcEEEhhhhhh
Confidence 5567899999999999999999999999986 8999999999999999887 6788888774 45899999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+...+.+...++.......+...+... .+......+.|++|++.+..+++...+++|||.
T Consensus 227 l~~~~~~~~~~~~~~~~~~l~~ll~~l------------------d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~-- 286 (364)
T TIGR01242 227 IAAKRTDSGTSGDREVQRTLMQLLAEL------------------DGFDPRGNVKVIAATNRPDILDPALLRPGRFDR-- 286 (364)
T ss_pred hccccccCCCCccHHHHHHHHHHHHHh------------------hCCCCCCCEEEEEecCChhhCChhhcCcccCce--
Confidence 988766543332222211121111111 122222234445555688889999999999996
Q ss_pred eeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
.+.+|.|+...|..+++.... -+++.++..++| |+|+.++|..+.
T Consensus 287 --~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 287 --IIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred --EEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455555677888888876532 157889999999 999999997654
No 59
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=2e-20 Score=190.80 Aligned_cols=122 Identities=26% Similarity=0.368 Sum_probs=108.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|.++.+ ++++|++.||++.. .++|++|+. ++.++..++|||.+++|++++.
T Consensus 121 kViIIDEa~~ls~~-------a~naLLK~LEepp~~v~fIL~Ttd-------------~~kil~tI~SRc~~~~f~~Ls~ 180 (546)
T PRK14957 121 KVYLIDEVHMLSKQ-------SFNALLKTLEEPPEYVKFILATTD-------------YHKIPVTILSRCIQLHLKHISQ 180 (546)
T ss_pred EEEEEechhhccHH-------HHHHHHHHHhcCCCCceEEEEECC-------------hhhhhhhHHHheeeEEeCCCCH
Confidence 69999999999999 99999999999865 557777742 5778888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.++.+++++|++++++++.+|++.+ +||+|.|+++|+.+..++. ..|+.++|+++++.
T Consensus 181 ~eI~~~L~~il~~egi~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~~----~~It~~~V~~~l~~ 243 (546)
T PRK14957 181 ADIKDQLKIILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQAISFCG----GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc----CCCCHHHHHHHHcc
Confidence 999999999999999999999999999999 9999999999998876632 46888888887655
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=1.4e-20 Score=194.03 Aligned_cols=123 Identities=24% Similarity=0.358 Sum_probs=109.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.. +++.|+|.||++.+ ..+|++|+. ++.++..++|||+.|.|++++.
T Consensus 121 KVIIIDEad~Ls~~-------A~NALLKtLEEPp~~v~fILaTtd-------------~~kL~~TIrSRC~~f~f~~Ls~ 180 (709)
T PRK08691 121 KVYIIDEVHMLSKS-------AFNAMLKTLEEPPEHVKFILATTD-------------PHKVPVTVLSRCLQFVLRNMTA 180 (709)
T ss_pred EEEEEECccccCHH-------HHHHHHHHHHhCCCCcEEEEEeCC-------------ccccchHHHHHHhhhhcCCCCH
Confidence 69999999999998 99999999999765 457777742 5678888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
+++.+.|+.+++++|+.++++++..|++.+ +||+|+|+++|+.+..+ +...|+.++|..+++.-
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A-~GslRdAlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA-AGSMRDALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 999999999999999999999999999999 99999999999988765 34579999999988764
No 61
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.85 E-value=8.1e-21 Score=200.07 Aligned_cols=140 Identities=20% Similarity=0.194 Sum_probs=115.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQK 322 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~ 322 (409)
+++||||+|.++.. .++.|++.+|+. ..++|.+| +.++.+.+++.++|||.+++++|++.+
T Consensus 111 ~IL~IDEIh~Ln~~-------qQdaLL~~lE~g-~IiLI~aT-----------Tenp~~~l~~aL~SR~~v~~l~pLs~e 171 (725)
T PRK13341 111 TILFIDEVHRFNKA-------QQDALLPWVENG-TITLIGAT-----------TENPYFEVNKALVSRSRLFRLKSLSDE 171 (725)
T ss_pred eEEEEeChhhCCHH-------HHHHHHHHhcCc-eEEEEEec-----------CCChHhhhhhHhhccccceecCCCCHH
Confidence 58999999999988 889999999862 23344444 456778889999999999999999999
Q ss_pred HHHHHHHHHHh-------hcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhC--CCCccHHHHHHHHHhccCh
Q psy2778 323 DMEAIIKLRAN-------TEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNG--RTAISKQDILEVSTLFLDA 393 (409)
Q Consensus 323 e~~~il~~~~~-------~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~--~~~I~~~~v~~~~~~~~~~ 393 (409)
++..+++..+. .+++.++++++++|++.+ .||+|.++++|+.+...+...+ ...|+.++++++..
T Consensus 172 di~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s-~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~----- 245 (725)
T PRK13341 172 DLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA-NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ----- 245 (725)
T ss_pred HHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH-----
Confidence 99999998887 567899999999999999 9999999999999875443222 22488888988886
Q ss_pred HHHHHHHHHhhhhh
Q psy2778 394 KSSARILTENKDKF 407 (409)
Q Consensus 394 ~~~~~~~~~~~~~~ 407 (409)
+++..|++.|+.||
T Consensus 246 ~~~~~ydk~gd~hy 259 (725)
T PRK13341 246 QRAVLYDKEGDAHF 259 (725)
T ss_pred HhhhhcccCCCCCH
Confidence 67778888888887
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=1.1e-20 Score=191.04 Aligned_cols=125 Identities=25% Similarity=0.306 Sum_probs=108.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|.++.+ .++.|++.+|++.+ .++|++|+. +..+++.++|||.++.|++++.
T Consensus 119 kVvIIDE~h~Lt~~-------a~~~LLk~LE~p~~~vv~Ilattn-------------~~kl~~~L~SR~~vv~f~~l~~ 178 (472)
T PRK14962 119 KVYIIDEVHMLTKE-------AFNALLKTLEEPPSHVVFVLATTN-------------LEKVPPTIISRCQVIEFRNISD 178 (472)
T ss_pred EEEEEEChHHhHHH-------HHHHHHHHHHhCCCcEEEEEEeCC-------------hHhhhHHHhcCcEEEEECCccH
Confidence 69999999999988 99999999999766 445666642 3467889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccC
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLD 392 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~ 392 (409)
+++..+++.+++.+++.++++++++|++.+ +||+|.|+++|+.+..++ + ..||.++|.++++...+
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~~~~ 244 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKRA-SGGLRDALTMLEQVWKFS---E-GKITLETVHEALGLIPI 244 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcCCCH
Confidence 999999999999999999999999999999 999999999999876653 2 24999999998876543
No 63
>KOG0991|consensus
Probab=99.85 E-value=3.3e-21 Score=171.03 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=92.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++.+.||+++.+.- ++.+|+|+||-+.+ ..|.+++|- +..+.+.+-|||-++++..+++
T Consensus 115 KIiILDEADSMT~g-------AQQAlRRtMEiyS~ttRFalaCN~-------------s~KIiEPIQSRCAiLRysklsd 174 (333)
T KOG0991|consen 115 KIIILDEADSMTAG-------AQQALRRTMEIYSNTTRFALACNQ-------------SEKIIEPIQSRCAILRYSKLSD 174 (333)
T ss_pred eEEEeeccchhhhH-------HHHHHHHHHHHHcccchhhhhhcc-------------hhhhhhhHHhhhHhhhhcccCH
Confidence 57888888888888 99999999998865 679999984 3455556999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 367 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~ 367 (409)
..+..-|..+++.+++++++++++.|.-.| .||+|.|+|.|+...
T Consensus 175 ~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta-~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 175 QQILKRLLEVAKAEKVNYTDDGLEAIIFTA-QGDMRQALNNLQSTV 219 (333)
T ss_pred HHHHHHHHHHHHHhCCCCCcchHHHhhhhc-cchHHHHHHHHHHHh
Confidence 999999999999999999999999999999 999999999998654
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=4e-20 Score=189.83 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=108.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ +++.|+|.+|++.. .++|++|+. ++.++..++|||+.++|++++.
T Consensus 121 kVvIIDEad~ls~~-------a~naLLK~LEepp~~~~fIL~t~d-------------~~kil~tI~SRc~~~~f~~l~~ 180 (527)
T PRK14969 121 KVYIIDEVHMLSKS-------AFNAMLKTLEEPPEHVKFILATTD-------------PQKIPVTVLSRCLQFNLKQMPP 180 (527)
T ss_pred eEEEEcCcccCCHH-------HHHHHHHHHhCCCCCEEEEEEeCC-------------hhhCchhHHHHHHHHhcCCCCH
Confidence 69999999999999 99999999999866 457777642 4567778999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.+..+++++|+.++++++..|++.+ +||+|.|+++++.+..+ +...|+.++|..+.+.
T Consensus 181 ~~i~~~L~~il~~egi~~~~~al~~la~~s-~Gslr~al~lldqai~~----~~~~I~~~~v~~~~~~ 243 (527)
T PRK14969 181 PLIVSHLQHILEQENIPFDATALQLLARAA-AGSMRDALSLLDQAIAY----GGGTVNESEVRAMLGA 243 (527)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHCC
Confidence 999999999999999999999999999999 99999999999988765 3457999999888763
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=4.4e-20 Score=182.18 Aligned_cols=121 Identities=26% Similarity=0.324 Sum_probs=107.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|++.+|++... .+|++|+. +..+++.++|||..++|+|++.
T Consensus 121 kviIIDEa~~l~~~-------a~naLLk~lEe~~~~~~fIl~t~~-------------~~~l~~tI~SRc~~~~~~~l~~ 180 (363)
T PRK14961 121 KVYLIDEVHMLSRH-------SFNALLKTLEEPPQHIKFILATTD-------------VEKIPKTILSRCLQFKLKIISE 180 (363)
T ss_pred eEEEEEChhhcCHH-------HHHHHHHHHhcCCCCeEEEEEcCC-------------hHhhhHHHHhhceEEeCCCCCH
Confidence 69999999999998 999999999998664 46666642 3457888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.++.+++++|+.++++++++|++.+ +||+|.|+++|+.+..+ +...|+.++|.++++
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~s-~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYHA-HGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 999999999999999999999999999999 99999999999988754 456799999988775
No 66
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=5.9e-20 Score=186.51 Aligned_cols=121 Identities=30% Similarity=0.422 Sum_probs=107.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|+++.+ ++++|++.||++.. ..+|++|+. ++.+++.++|||.+++|.+++.
T Consensus 119 KVvIIDEad~Lt~~-------A~NALLK~LEEpp~~t~FIL~ttd-------------~~kL~~tI~SRc~~~~F~~Ls~ 178 (535)
T PRK08451 119 KIFIIDEVHMLTKE-------AFNALLKTLEEPPSYVKFILATTD-------------PLKLPATILSRTQHFRFKQIPQ 178 (535)
T ss_pred EEEEEECcccCCHH-------HHHHHHHHHhhcCCceEEEEEECC-------------hhhCchHHHhhceeEEcCCCCH
Confidence 69999999999999 99999999999866 446776632 4788899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.+..+++++|++++++++.+|++.+ +||+|.|+++|+.+..++ ...||.++|..+++
T Consensus 179 ~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s-~GdlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 179 NSIISHLKTILEKEGVSYEPEALEILARSG-NGSLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 999999999999999999999999999999 999999999999988775 24578887776654
No 67
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.84 E-value=2.5e-20 Score=195.89 Aligned_cols=175 Identities=21% Similarity=0.291 Sum_probs=134.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELT 85 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~ 85 (409)
..|+|+||+||||||||++++++|++++. +|+.++++++...+++... .+++.|..+. ...||||||||+|.+.
T Consensus 183 ~~~~gill~G~~G~GKt~~~~~~a~~~~~--~f~~is~~~~~~~~~g~~~~~~~~~f~~a~---~~~P~IifIDEiD~l~ 257 (644)
T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDFVEMFVGVGASRVRDMFEQAK---KAAPCIIFIDEIDAVG 257 (644)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCC--CEEEEehHHhHHhhhcccHHHHHHHHHHHH---hcCCcEEEehhHhhhh
Confidence 34689999999999999999999999985 9999999999999999877 7889998885 4589999999999998
Q ss_pred ccccCCCCCCc---cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 86 PVETENPMGGY---GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 86 ~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
..|.....++. .+.+++++..|+ ++...+.+++++++|++..++++..+++|||+
T Consensus 258 ~~r~~~~~g~~~~~~~~ln~lL~~md---------------------g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr- 315 (644)
T PRK10733 258 RQRGAGLGGGHDEREQTLNQMLVEMD---------------------GFEGNEGIIVIAATNRPDVLDPALLRPGRFDR- 315 (644)
T ss_pred hccCCCCCCCchHHHHHHHHHHHhhh---------------------cccCCCCeeEEEecCChhhcCHHHhCCcccce-
Confidence 87765332222 234444433332 23333445555666799999999999999996
Q ss_pred ceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHh
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIK 211 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~ 211 (409)
.+++|.|+...|..|++.+.. .++..++..+.| |+|+.++|+.+..
T Consensus 316 ---~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 316 ---QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred ---EEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 444555577788888876532 257789999999 9999999976653
No 68
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=9.1e-20 Score=188.40 Aligned_cols=121 Identities=31% Similarity=0.420 Sum_probs=107.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|+++.+ +++.|.+++|++.. .++|++|+ .++.+|+.++|||..+.|.+++.
T Consensus 121 kViIIDE~~~Lt~~-------a~naLLKtLEepp~~~ifIlatt-------------~~~ki~~tI~SRc~~~~f~~~~~ 180 (559)
T PRK05563 121 KVYIIDEVHMLSTG-------AFNALLKTLEEPPAHVIFILATT-------------EPHKIPATILSRCQRFDFKRISV 180 (559)
T ss_pred EEEEEECcccCCHH-------HHHHHHHHhcCCCCCeEEEEEeC-------------ChhhCcHHHHhHheEEecCCCCH
Confidence 69999999999999 99999999999865 46777763 25788999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
.++.+.++.+++++|++++++++..|++.+ +||+|.|+++|+.+..++ ...|+.++|..+++
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~s-~G~~R~al~~Ldq~~~~~----~~~It~~~V~~vlg 242 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARAA-EGGMRDALSILDQAISFG----DGKVTYEDALEVTG 242 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHhC
Confidence 999999999999999999999999999999 999999999999887663 34688888877654
No 69
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=1.1e-19 Score=186.61 Aligned_cols=121 Identities=26% Similarity=0.350 Sum_probs=105.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|++.||++.. .++|++|+. ++.++..++|||.+++|++++.
T Consensus 121 kVIIIDEad~Lt~~-------a~naLLk~LEEP~~~~ifILaTt~-------------~~kll~TI~SRcq~i~F~pLs~ 180 (624)
T PRK14959 121 KVFIIDEAHMLTRE-------AFNALLKTLEEPPARVTFVLATTE-------------PHKFPVTIVSRCQHFTFTRLSE 180 (624)
T ss_pred eEEEEEChHhCCHH-------HHHHHHHHhhccCCCEEEEEecCC-------------hhhhhHHHHhhhhccccCCCCH
Confidence 69999999999999 99999999998755 557777752 4567778999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.|+.+++++++.+++++++.|++.+ +||+|+|+++|+.+. + .+...|+.++|+.+.+
T Consensus 181 ~eL~~~L~~il~~egi~id~eal~lIA~~s-~GdlR~Al~lLeqll--~--~g~~~It~d~V~~~lg 242 (624)
T PRK14959 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRA-AGSVRDSMSLLGQVL--A--LGESRLTIDGARGVLG 242 (624)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH--H--hcCCCcCHHHHHHHhC
Confidence 999999999999999999999999999999 999999999999763 2 2455799998877664
No 70
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=8.1e-20 Score=189.60 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=108.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ ++++|+|+||++.. .+||++|+. ++.+|..++|||..+.|++++.
T Consensus 121 KVvIIdev~~Lt~~-------a~naLLk~LEepp~~~~fIl~t~~-------------~~kl~~tI~SRc~~~~f~~l~~ 180 (576)
T PRK14965 121 KIFIIDEVHMLSTN-------AFNALLKTLEEPPPHVKFIFATTE-------------PHKVPITILSRCQRFDFRRIPL 180 (576)
T ss_pred eEEEEEChhhCCHH-------HHHHHHHHHHcCCCCeEEEEEeCC-------------hhhhhHHHHHhhhhhhcCCCCH
Confidence 69999999999999 99999999999866 567777742 5788999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.+..+++++|+.++++++.+|++.+ +||+|.|+++|+.+..++. ..|+.++|..+++
T Consensus 181 ~~i~~~L~~i~~~egi~i~~~al~~la~~a-~G~lr~al~~Ldqliay~g----~~It~edV~~llG 242 (576)
T PRK14965 181 QKIVDRLRYIADQEGISISDAALALVARKG-DGSMRDSLSTLDQVLAFCG----DAVGDDDVAELLG 242 (576)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc----CCCCHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999998876642 3588898887754
No 71
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.3e-19 Score=188.40 Aligned_cols=122 Identities=24% Similarity=0.385 Sum_probs=107.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ ++++|++.||++... ++|++|+. ++.+++.++|||.+++|.+++.
T Consensus 120 KV~IIDEa~~LT~~-------A~NALLKtLEEPP~~tifILaTte-------------~~KLl~TI~SRcq~ieF~~L~~ 179 (725)
T PRK07133 120 KIYIIDEVHMLSKS-------AFNALLKTLEEPPKHVIFILATTE-------------VHKIPLTILSRVQRFNFRRISE 179 (725)
T ss_pred EEEEEEChhhCCHH-------HHHHHHHHhhcCCCceEEEEEcCC-------------hhhhhHHHHhhceeEEccCCCH
Confidence 69999999999999 999999999998764 56777642 5688899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.|..+++++|+.++++++..|++.+ +||+|.|+++|+.+..++ ...|+.++|..+++.
T Consensus 180 eeI~~~L~~il~kegI~id~eAl~~LA~lS-~GslR~AlslLekl~~y~----~~~It~e~V~ellg~ 242 (725)
T PRK07133 180 DEIVSRLEFILEKENISYEKNALKLIAKLS-SGSLRDALSIAEQVSIFG----NNKITLKNVEELFGL 242 (725)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999 999999999999887653 234888888876553
No 72
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.7e-19 Score=184.20 Aligned_cols=121 Identities=25% Similarity=0.370 Sum_probs=106.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|+++.+ +++.|++.||++.. .++|++|+. ++.+++.++|||.+++|.+++.
T Consensus 121 KVIIIDEad~Lt~~-------A~NaLLKtLEEPp~~tvfIL~Tt~-------------~~KLl~TI~SRcq~ieF~~Ls~ 180 (605)
T PRK05896 121 KVYIIDEAHMLSTS-------AWNALLKTLEEPPKHVVFIFATTE-------------FQKIPLTIISRCQRYNFKKLNN 180 (605)
T ss_pred EEEEEechHhCCHH-------HHHHHHHHHHhCCCcEEEEEECCC-------------hHhhhHHHHhhhhhcccCCCCH
Confidence 79999999999998 99999999999865 667777742 5788899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++...+..+++++|+.++++++..|+++| +||+|.|+++|+.+..++ + ..|+.++|..+.+
T Consensus 181 ~eL~~~L~~il~kegi~Is~eal~~La~lS-~GdlR~AlnlLekL~~y~---~-~~It~e~V~ellg 242 (605)
T PRK05896 181 SELQELLKSIAKKEKIKIEDNAIDKIADLA-DGSLRDGLSILDQLSTFK---N-SEIDIEDINKTFG 242 (605)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhc
Confidence 999999999999999999999999999999 999999999999876654 2 2388888877654
No 73
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=8.6e-20 Score=172.31 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=75.8
Q ss_pred hHHHHHHHhcccCCceE-EEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCH
Q psy2778 264 TFTYLHRALESAIAPIV-IFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDD 341 (409)
Q Consensus 264 ~~~~L~~~~e~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~ 341 (409)
.+..|.+.||.....++ |++... . ...+...+++.+++|+ ..+.|++|+.+++.++++..+...++.+++
T Consensus 129 ~i~~Ll~~~e~~~~~~~vila~~~-------~-~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~ 200 (261)
T TIGR02881 129 AIDTLVKGMEDNRNEFVLILAGYS-------D-EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTE 200 (261)
T ss_pred HHHHHHHHHhccCCCEEEEecCCc-------c-hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCH
Confidence 45566777777655544 444321 1 1234456778899999 679999999999999999999999999999
Q ss_pred HHHHHHHHh---------cCCccHHHHHHHHHHHHHHHH
Q psy2778 342 EALVTLSEI---------GTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 342 ~~l~~I~~~---------s~~g~~R~al~ll~~~~~~a~ 371 (409)
+++++|.+. ...||+|.+.++++.|.....
T Consensus 201 ~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 201 EAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 999998543 125899999999999886543
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.82 E-value=1.8e-19 Score=180.86 Aligned_cols=121 Identities=28% Similarity=0.357 Sum_probs=100.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQK 322 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~ 322 (409)
.++||||+|.++.. .++.|++.+|+. ..+++.+| +.++.+.+++.++|||.++.+++++.+
T Consensus 94 ~vL~IDEi~~l~~~-------~q~~LL~~le~~-~iilI~at-----------t~n~~~~l~~aL~SR~~~~~~~~ls~e 154 (413)
T PRK13342 94 TILFIDEIHRFNKA-------QQDALLPHVEDG-TITLIGAT-----------TENPSFEVNPALLSRAQVFELKPLSEE 154 (413)
T ss_pred eEEEEechhhhCHH-------HHHHHHHHhhcC-cEEEEEeC-----------CCChhhhccHHHhccceeeEeCCCCHH
Confidence 58899999988888 888999999872 23344444 456677889999999999999999999
Q ss_pred HHHHHHHHHHhhc--CC-CCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 323 DMEAIIKLRANTE--GH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 323 e~~~il~~~~~~~--~~-~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
++..+++..+... ++ ++++++++.|++.+ +||+|.++++|+.+... ...|+.++++.+.+
T Consensus 155 ~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s-~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~ 217 (413)
T PRK13342 155 DIEQLLKRALEDKERGLVELDDEALDALARLA-NGDARRALNLLELAALG-----VDSITLELLEEALQ 217 (413)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHh
Confidence 9999999876652 55 89999999999999 99999999999988654 34699999988876
No 75
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=2e-19 Score=191.76 Aligned_cols=123 Identities=19% Similarity=0.241 Sum_probs=106.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ .++.|+|.||++... +|||+|+. ++.++..|+|||.++.|.+++.
T Consensus 122 KV~IIDEad~lt~~-------a~NaLLK~LEEpP~~~~fIl~tt~-------------~~kLl~TIrSRc~~v~F~~l~~ 181 (824)
T PRK07764 122 KIFIIDEAHMVTPQ-------GFNALLKIVEEPPEHLKFIFATTE-------------PDKVIGTIRSRTHHYPFRLVPP 181 (824)
T ss_pred eEEEEechhhcCHH-------HHHHHHHHHhCCCCCeEEEEEeCC-------------hhhhhHHHHhheeEEEeeCCCH
Confidence 79999999999999 999999999998664 56666642 3457888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.|..+++++|+.++++++.+|++.+ +||+|.++++|+.+..++ +...||.++|..+++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s-gGdlR~Al~eLEKLia~~---~~~~IT~e~V~allg~ 245 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG-GGSVRDSLSVLDQLLAGA---GPEGVTYERAVALLGV 245 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc---CCCCCCHHHHHHHhcC
Confidence 999999999999999999999999999999 999999999999887543 3446888888776543
No 76
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=3.1e-19 Score=184.70 Aligned_cols=122 Identities=26% Similarity=0.352 Sum_probs=108.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|+++.+ +++.|+|.||++.. .+||++|+. +..++..++|||..+.|.+++.
T Consensus 134 KVvIIDEad~Ls~~-------a~naLLKtLEePp~~~~fIl~tte-------------~~kll~tI~SRcq~~~f~~l~~ 193 (598)
T PRK09111 134 KVYIIDEVHMLSTA-------AFNALLKTLEEPPPHVKFIFATTE-------------IRKVPVTVLSRCQRFDLRRIEA 193 (598)
T ss_pred EEEEEEChHhCCHH-------HHHHHHHHHHhCCCCeEEEEEeCC-------------hhhhhHHHHhheeEEEecCCCH
Confidence 69999999999999 99999999999865 557777742 2457778999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++...++.+++++++.++++++++|++.+ +||+|.++++|+.+..++ .+.|+.++|..+++.
T Consensus 194 ~el~~~L~~i~~kegi~i~~eAl~lIa~~a-~Gdlr~al~~Ldkli~~g----~g~It~e~V~~llg~ 256 (598)
T PRK09111 194 DVLAAHLSRIAAKEGVEVEDEALALIARAA-EGSVRDGLSLLDQAIAHG----AGEVTAEAVRDMLGL 256 (598)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc----CCCcCHHHHHHHhCC
Confidence 999999999999999999999999999999 999999999999876553 357999999998864
No 77
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=4.9e-19 Score=172.68 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=81.2
Q ss_pred CCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 301 HGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 301 ~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
..++..++||| +++++.+++.+++.++++..+...++.++++++++|++.+ +|++|.|.++|+.+..+|..++...|+
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~-~G~pR~a~~~l~~~~~~a~~~~~~~I~ 239 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGVIT 239 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCCCCC
Confidence 45778899998 6799999999999999999999999999999999999999 999999999999998888766667899
Q ss_pred HHHHHHHHHhc
Q psy2778 380 KQDILEVSTLF 390 (409)
Q Consensus 380 ~~~v~~~~~~~ 390 (409)
.++++.++..+
T Consensus 240 ~~~v~~~l~~~ 250 (328)
T PRK00080 240 KEIADKALDML 250 (328)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 78
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=1.3e-18 Score=176.64 Aligned_cols=121 Identities=25% Similarity=0.300 Sum_probs=107.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-CceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|+++.+ +++.|++.+|++. ..++|++|+. ++.++..+++||..+.|.+++.
T Consensus 121 KVvIIDEad~Lt~~-------a~naLLk~LEepp~~~v~Il~tt~-------------~~kl~~tI~SRc~~i~f~~ls~ 180 (486)
T PRK14953 121 KVYIIDEAHMLTKE-------AFNALLKTLEEPPPRTIFILCTTE-------------YDKIPPTILSRCQRFIFSKPTK 180 (486)
T ss_pred eEEEEEChhhcCHH-------HHHHHHHHHhcCCCCeEEEEEECC-------------HHHHHHHHHHhceEEEcCCCCH
Confidence 79999999999999 9999999999985 4778887742 4567888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++...+..+++.+|++++++++.+|+..+ +||+|.|+++|+.+..++ ...||.++|..+.+
T Consensus 181 ~el~~~L~~i~k~egi~id~~al~~La~~s-~G~lr~al~~Ldkl~~~~----~~~It~~~V~~~lg 242 (486)
T PRK14953 181 EQIKEYLKRICNEEKIEYEEKALDLLAQAS-EGGMRDAASLLDQASTYG----EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----CCCcCHHHHHHHhC
Confidence 999999999999999999999999999999 999999999999887653 34689999988654
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.4e-18 Score=177.05 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=105.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|.+.+|++.. .++|++++. +..+++.++|||..++|.+++.
T Consensus 118 kVVIIDEad~ls~~-------a~naLLk~LEep~~~t~~Il~t~~-------------~~kl~~~I~SRc~~~~f~~ls~ 177 (504)
T PRK14963 118 KVYILDEAHMMSKS-------AFNALLKTLEEPPEHVIFILATTE-------------PEKMPPTILSRTQHFRFRRLTE 177 (504)
T ss_pred eEEEEECccccCHH-------HHHHHHHHHHhCCCCEEEEEEcCC-------------hhhCChHHhcceEEEEecCCCH
Confidence 69999999999998 99999999999855 466677642 4577888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.++.+++++|++++++++.+|++.+ +||+|.|+++|+.+..+ ...||.++|..+++
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s-~GdlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA-DGAMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 999999999999999999999999999999 99999999999987543 23689888888755
No 80
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=6.4e-19 Score=175.83 Aligned_cols=124 Identities=24% Similarity=0.362 Sum_probs=108.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|.+.+|++.. .++|+.++. +..+++.+.+||.+++|++++.
T Consensus 129 kvvIIdea~~l~~~-------~~~~LLk~LEep~~~t~~Il~t~~-------------~~kl~~tl~sR~~~v~f~~l~~ 188 (397)
T PRK14955 129 RVYIIDEVHMLSIA-------AFNAFLKTLEEPPPHAIFIFATTE-------------LHKIPATIASRCQRFNFKRIPL 188 (397)
T ss_pred EEEEEeChhhCCHH-------HHHHHHHHHhcCCCCeEEEEEeCC-------------hHHhHHHHHHHHHHhhcCCCCH
Confidence 69999999999998 99999999999855 556676642 3577788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT-NGRTAISKQDILEVS 387 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~-~~~~~I~~~~v~~~~ 387 (409)
+++.+.+..+++++++.++++++++|+..+ +||+|.|++.|+.+..++.. .+...|+.++|..+.
T Consensus 189 ~ei~~~l~~~~~~~g~~i~~~al~~l~~~s-~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 189 EEIQQQLQGICEAEGISVDADALQLIGRKA-QGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 999999999999999999999999999999 99999999999998887642 234579999998765
No 81
>PRK04195 replication factor C large subunit; Provisional
Probab=99.80 E-value=2e-18 Score=176.56 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=82.8
Q ss_pred hHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCch-hhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHH
Q psy2778 264 TFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPL-DLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDE 342 (409)
Q Consensus 264 ~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~ 342 (409)
.+..|.+.++....|+|+++.+ +..++. .+++||..+.|++++..++..+++.+++.+++.++++
T Consensus 118 ~~~aL~~~l~~~~~~iIli~n~--------------~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e 183 (482)
T PRK04195 118 GARAILELIKKAKQPIILTAND--------------PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDE 183 (482)
T ss_pred HHHHHHHHHHcCCCCEEEeccC--------------ccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 4566677777666676665542 233343 7999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 343 ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 343 ~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
++++|++.+ +||+|.|++.|+.+ + .+...|+.+++..+.
T Consensus 184 aL~~Ia~~s-~GDlR~ain~Lq~~---a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 184 ALKEIAERS-GGDLRSAINDLQAI---A--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHH---h--cCCCCCcHHHHHHhh
Confidence 999999999 99999999999872 2 244567777776543
No 82
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.1e-18 Score=180.83 Aligned_cols=124 Identities=24% Similarity=0.363 Sum_probs=108.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|++.||++.. .++|++|+. ++.+++.++|||.+++|.+++.
T Consensus 129 KVvIIdEad~Lt~~-------a~naLLK~LEePp~~tv~IL~t~~-------------~~kLl~TI~SRc~~vef~~l~~ 188 (620)
T PRK14954 129 RVYIIDEVHMLSTA-------AFNAFLKTLEEPPPHAIFIFATTE-------------LHKIPATIASRCQRFNFKRIPL 188 (620)
T ss_pred EEEEEeChhhcCHH-------HHHHHHHHHhCCCCCeEEEEEeCC-------------hhhhhHHHHhhceEEecCCCCH
Confidence 69999999999998 99999999999866 556777642 3678888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT-NGRTAISKQDILEVS 387 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~-~~~~~I~~~~v~~~~ 387 (409)
+++...+..+++++|+.++++++++|++.+ +||+|.|++.|+.+..++.. .....|+.++|.+++
T Consensus 189 ~ei~~~L~~i~~~egi~I~~eal~~La~~s-~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 189 DEIQSQLQMICRAEGIQIDADALQLIARKA-QGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 999999999999999999999999999999 99999999999988877621 224579988887765
No 83
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=1.9e-18 Score=178.13 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=106.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|+++.+ +++.|++.+|++.. .++|++|+. ++.+++.++|||..++|.+++.
T Consensus 121 KVvIIDEa~~Ls~~-------a~naLLK~LEepp~~~vfI~~tte-------------~~kL~~tI~SRc~~~~f~~l~~ 180 (563)
T PRK06647 121 RVYIIDEVHMLSNS-------AFNALLKTIEEPPPYIVFIFATTE-------------VHKLPATIKSRCQHFNFRLLSL 180 (563)
T ss_pred EEEEEEChhhcCHH-------HHHHHHHhhccCCCCEEEEEecCC-------------hHHhHHHHHHhceEEEecCCCH
Confidence 69999999999999 99999999999766 456666631 4678889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.++.+++++|++++++++.+|++.+ +||+|.|+++|+.+..++ ...|+.++|..+++
T Consensus 181 ~el~~~L~~i~~~egi~id~eAl~lLa~~s-~GdlR~alslLdklis~~----~~~It~e~V~~llg 242 (563)
T PRK06647 181 EKIYNMLKKVCLEDQIKYEDEALKWIAYKS-TGSVRDAYTLFDQVVSFS----DSDITLEQIRSKMG 242 (563)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 999999999999999999999999999999 999999999999887653 24689998888764
No 84
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=6.1e-18 Score=163.34 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=79.0
Q ss_pred CCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 301 HGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 301 ~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
..+++.++||| .++++.+|+.+++.++++..+...++.++++++++|++.+ +|++|.++++++.+..+|...+...|+
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-~G~pR~~~~ll~~~~~~a~~~~~~~it 218 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRS-RGTPRIANRLLRRVRDFAQVRGQKIIN 218 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHcCCCCcC
Confidence 45677899999 5689999999999999999999999999999999999999 999999999999988887665667799
Q ss_pred HHHHHHHHHh
Q psy2778 380 KQDILEVSTL 389 (409)
Q Consensus 380 ~~~v~~~~~~ 389 (409)
.++|+.+...
T Consensus 219 ~~~v~~~l~~ 228 (305)
T TIGR00635 219 RDIALKALEM 228 (305)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 85
>PRK04132 replication factor C small subunit; Provisional
Probab=99.78 E-value=2.5e-18 Score=182.16 Aligned_cols=121 Identities=23% Similarity=0.352 Sum_probs=104.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ ++++|+++||.+.+ ..||++||. ++.+++.++|||++++|++++.
T Consensus 632 KVvIIDEaD~Lt~~-------AQnALLk~lEep~~~~~FILi~N~-------------~~kIi~tIrSRC~~i~F~~ls~ 691 (846)
T PRK04132 632 KIIFLDEADALTQD-------AQQALRRTMEMFSSNVRFILSCNY-------------SSKIIEPIQSRCAIFRFRPLRD 691 (846)
T ss_pred EEEEEECcccCCHH-------HHHHHHHHhhCCCCCeEEEEEeCC-------------hhhCchHHhhhceEEeCCCCCH
Confidence 58999999999999 99999999999765 457777653 5778888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.+.|+.+|++++++++++++..|++.| +||+|.|+++|+.+.... ..|+.++|..+.+.
T Consensus 692 ~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s-~GDlR~AIn~Lq~~~~~~-----~~It~~~V~~~~~~ 753 (846)
T PRK04132 692 EDIAKRLRYIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAALD-----DKITDENVFLVASR 753 (846)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-----CCCCHHHHHHHhCC
Confidence 999999999999999999999999999999 999999999999876432 35777777665543
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.3e-17 Score=168.35 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=104.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|.+.+|++.. .++|++++. ++.+.+.++|||.+++|.+++.
T Consensus 123 kvvIIdead~lt~~-------~~n~LLk~lEep~~~~~~Il~t~~-------------~~kl~~tI~sRc~~v~f~~l~~ 182 (451)
T PRK06305 123 KIYIIDEVHMLTKE-------AFNSLLKTLEEPPQHVKFFLATTE-------------IHKIPGTILSRCQKMHLKRIPE 182 (451)
T ss_pred EEEEEecHHhhCHH-------HHHHHHHHhhcCCCCceEEEEeCC-------------hHhcchHHHHhceEEeCCCCCH
Confidence 69999999999998 99999999999865 456666642 3567788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.+..+++++|+++++++++.|++.+ +||+|.|+++|+.+..+. + ..|+.++|..+.+
T Consensus 183 ~el~~~L~~~~~~eg~~i~~~al~~L~~~s-~gdlr~a~~~Lekl~~~~---~-~~It~~~V~~l~~ 244 (451)
T PRK06305 183 ETIIDKLALIAKQEGIETSREALLPIARAA-QGSLRDAESLYDYVVGLF---P-KSLDPDSVAKALG 244 (451)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCcCHHHHHHHHC
Confidence 999999999999999999999999999999 999999999999876552 2 3488888876553
No 87
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.2e-17 Score=173.97 Aligned_cols=120 Identities=25% Similarity=0.361 Sum_probs=104.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ ++++|++.||++.. .++|++|+. ++.+.+.++|||.+++|++++.
T Consensus 123 KVvIIdea~~Ls~~-------a~naLLK~LEepp~~tifIL~tt~-------------~~kIl~tI~SRc~iv~f~~ls~ 182 (614)
T PRK14971 123 KIYIIDEVHMLSQA-------AFNAFLKTLEEPPSYAIFILATTE-------------KHKILPTILSRCQIFDFNRIQV 182 (614)
T ss_pred EEEEEECcccCCHH-------HHHHHHHHHhCCCCCeEEEEEeCC-------------chhchHHHHhhhheeecCCCCH
Confidence 69999999999999 99999999999865 566777642 4678888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
+++...+..+++++|++++++++++|+..+ +||+|+|+++|+.+..++ |.. |+.++|.+.+
T Consensus 183 ~ei~~~L~~ia~~egi~i~~~al~~La~~s-~gdlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 183 ADIVNHLQYVASKEGITAEPEALNVIAQKA-DGGMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 999999999999999999999999999999 999999999999887664 222 7776665554
No 88
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=8e-18 Score=160.36 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=71.9
Q ss_pred hHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhh-eeecCCCCHHHHHHHHHHHHhhcCCCCCH
Q psy2778 264 TFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTTPYNQKDMEAIIKLRANTEGHVLDD 341 (409)
Q Consensus 264 ~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~ 341 (409)
.+..|.+.||+... .+||++++.. ........++.+++||- .+.|++|+.+|+.+|+...+++.+..+++
T Consensus 147 ~~~~L~~~me~~~~~~~vI~ag~~~--------~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~ 218 (287)
T CHL00181 147 AIEILLQVMENQRDDLVVIFAGYKD--------RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTP 218 (287)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcH--------HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCCh
Confidence 55666666766544 4555655421 11112344578999994 79999999999999999999999999999
Q ss_pred HHHHHHHHh-------cCCccHHHHHHHHHHHHHH
Q psy2778 342 EALVTLSEI-------GTRSTLRYVVQLLTPAALT 369 (409)
Q Consensus 342 ~~l~~I~~~-------s~~g~~R~al~ll~~~~~~ 369 (409)
++...+.+. ..-|++|..-++++.+...
T Consensus 219 ~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 219 EAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred hHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 988776664 2237799999999988754
No 89
>KOG2035|consensus
Probab=99.76 E-value=5.5e-18 Score=154.17 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=96.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCce-EEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+++.|.|++.|+++ ++++|+|+||.|.+.+ +|+.+|. + ..+.+.++|||+.++++.+++
T Consensus 129 Kvvvi~ead~LT~d-------AQ~aLRRTMEkYs~~~RlIl~cns-------~------SriIepIrSRCl~iRvpaps~ 188 (351)
T KOG2035|consen 129 KVVVINEADELTRD-------AQHALRRTMEKYSSNCRLILVCNS-------T------SRIIEPIRSRCLFIRVPAPSD 188 (351)
T ss_pred EEEEEechHhhhHH-------HHHHHHHHHHHHhcCceEEEEecC-------c------ccchhHHhhheeEEeCCCCCH
Confidence 69999999999999 9999999999998854 7788874 3 345555999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT 369 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~ 369 (409)
+|+..++..+++++|+..+.+.+..|++.| +|++|+|+.+||.++..
T Consensus 189 eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS-~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 189 EEITSVLSKVLKKEGLQLPKELLKRIAEKS-NRNLRRALLMLEAVRVN 235 (351)
T ss_pred HHHHHHHHHHHHHhcccCcHHHHHHHHHHh-cccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 99999999999998865
No 90
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=1e-17 Score=172.58 Aligned_cols=125 Identities=31% Similarity=0.315 Sum_probs=109.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-----------------------------CceEEEecCcceeeecc
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-----------------------------APIVIFATNRGRCLVRG 293 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-----------------------------~~~~i~~~~~~~~~~~~ 293 (409)
|++||||++.|+++ .++.|++.||+.. ...+|.+|+
T Consensus 177 G~L~IdEI~~L~~~-------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt-------- 241 (531)
T TIGR02902 177 GVLFIDEIGELHPV-------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATT-------- 241 (531)
T ss_pred cEEEEechhhCCHH-------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEec--------
Confidence 89999999999999 9999999998631 113444543
Q ss_pred cccCCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Q psy2778 294 TDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTN 373 (409)
Q Consensus 294 ~~~~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~ 373 (409)
+.|..+|+++++||..+.|++|+.+|+.++++..+++.++.+++++++.|.+++ . +.|.+.++++.|..+|..+
T Consensus 242 ----~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~-~-n~Rel~nll~~Aa~~A~~~ 315 (531)
T TIGR02902 242 ----RNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA-S-NGREAVNIVQLAAGIALGE 315 (531)
T ss_pred ----CCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh-h-hHHHHHHHHHHHHHHHhhC
Confidence 346789999999999999999999999999999999999999999999999987 3 7899999999999888777
Q ss_pred CCCCccHHHHHHHHH
Q psy2778 374 GRTAISKQDILEVST 388 (409)
Q Consensus 374 ~~~~I~~~~v~~~~~ 388 (409)
++..|+.+|+.+++.
T Consensus 316 ~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 316 GRKRILAEDIEWVAE 330 (531)
T ss_pred CCcEEcHHHHHHHhC
Confidence 778899999999986
No 91
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.4e-17 Score=173.60 Aligned_cols=119 Identities=23% Similarity=0.303 Sum_probs=102.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|.++.+ +++.|++.||++... ++|++|+. +..+++.++|||..++|.+++.
T Consensus 123 KViIIDEad~Lt~~-------a~naLLK~LEePp~~tvfIL~t~~-------------~~~llpTIrSRc~~~~f~~l~~ 182 (620)
T PRK14948 123 KVYVIDECHMLSTA-------AFNALLKTLEEPPPRVVFVLATTD-------------PQRVLPTIISRCQRFDFRRIPL 182 (620)
T ss_pred eEEEEECccccCHH-------HHHHHHHHHhcCCcCeEEEEEeCC-------------hhhhhHHHHhheeEEEecCCCH
Confidence 69999999999999 999999999998664 46666642 4567788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
+++...+..++.++++.++++++..|++.+ +||+|+|+++|+....+. ..|+.++|..+.
T Consensus 183 ~ei~~~L~~ia~kegi~is~~al~~La~~s-~G~lr~A~~lLeklsL~~-----~~It~e~V~~lv 242 (620)
T PRK14948 183 EAMVQHLSEIAEKESIEIEPEALTLVAQRS-QGGLRDAESLLDQLSLLP-----GPITPEAVWDLL 242 (620)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc-----CCCCHHHHHHHh
Confidence 999999999999999999999999999999 999999999999876542 247777766543
No 92
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.75 E-value=4.8e-17 Score=159.16 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=101.4
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
.+++++||++.++.+ .++.|.+.+|.+.. ..+|++++. +..+++.+.+||..+.+.|++
T Consensus 126 ~~vlilDe~~~l~~~-------~~~~L~~~le~~~~~~~~Il~~~~-------------~~~~~~~L~sr~~~v~~~~~~ 185 (337)
T PRK12402 126 YKTILLDNAEALRED-------AQQALRRIMEQYSRTCRFIIATRQ-------------PSKLIPPIRSRCLPLFFRAPT 185 (337)
T ss_pred CcEEEEeCcccCCHH-------HHHHHHHHHHhccCCCeEEEEeCC-------------hhhCchhhcCCceEEEecCCC
Confidence 369999999999888 88999999997644 456666642 224556799999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
.+++.+++..++++++++++++++++|++.+ .||+|.+++.|+.+. .+...||.++|..+++
T Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-~gdlr~l~~~l~~~~-----~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 186 DDELVDVLESIAEAEGVDYDDDGLELIAYYA-GGDLRKAILTLQTAA-----LAAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH-----HcCCCCCHHHHHHHhC
Confidence 9999999999999999999999999999999 999999999998654 1234699999887665
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.74 E-value=6.8e-17 Score=150.03 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=94.7
Q ss_pred cccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhh---heeecCCCC
Q psy2778 244 VLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPYN 320 (409)
Q Consensus 244 vl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~---~~i~~~~~~ 320 (409)
+++|||+|.+.... -.+.+.|+.+++.+|+.... ++++++.. ......+.++++||| +++++++++
T Consensus 100 lliiDdi~~~~~~~-~~~~~lf~l~n~~~e~g~~~-li~ts~~~---------p~~l~~~~~~L~SRl~~g~~~~l~~~~ 168 (235)
T PRK08084 100 LVCIDNIECIAGDE-LWEMAIFDLYNRILESGRTR-LLITGDRP---------PRQLNLGLPDLASRLDWGQIYKLQPLS 168 (235)
T ss_pred EEEEeChhhhcCCH-HHHHHHHHHHHHHHHcCCCe-EEEeCCCC---------hHHcCcccHHHHHHHhCCceeeecCCC
Confidence 55566666554320 00112366666777753333 44444321 111223678999999 899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
.+++.++++.++...++.++++++++|++.+ .||.|.++++|+.....+..++ ..||.+.++++++
T Consensus 169 ~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~l~~~-~~it~~~~k~~l~ 234 (235)
T PRK08084 169 DEEKLQALQLRARLRGFELPEDVGRFLLKRL-DREMRTLFMTLDQLDRASITAQ-RKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 9999999998899999999999999999999 9999999999999754443333 5599999998875
No 94
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.9e-17 Score=160.55 Aligned_cols=121 Identities=27% Similarity=0.366 Sum_probs=104.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||++.++.. +++.|.+.+|++.. .++|++++. +..+++.+.+||.++++++++.
T Consensus 110 kiviIDE~~~l~~~-------~~~~ll~~le~~~~~~~~Il~~~~-------------~~kl~~~l~sr~~~v~~~~~~~ 169 (367)
T PRK14970 110 KIYIIDEVHMLSSA-------AFNAFLKTLEEPPAHAIFILATTE-------------KHKIIPTILSRCQIFDFKRITI 169 (367)
T ss_pred EEEEEeChhhcCHH-------HHHHHHHHHhCCCCceEEEEEeCC-------------cccCCHHHHhcceeEecCCccH
Confidence 69999999999888 89999999998755 456666642 3567788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++...+...++++|++++++++++|+..+ +||+|.+++.|+.+..++. .. ||.++|+.+.+
T Consensus 170 ~~l~~~l~~~~~~~g~~i~~~al~~l~~~~-~gdlr~~~~~lekl~~y~~---~~-it~~~v~~~~~ 231 (367)
T PRK14970 170 KDIKEHLAGIAVKEGIKFEDDALHIIAQKA-DGALRDALSIFDRVVTFCG---KN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC---CC-CCHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999998887752 23 88888887765
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=99.74 E-value=7.4e-17 Score=149.25 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=73.1
Q ss_pred Cchhhhhhhh---eeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 303 IPLDLLDRLL---IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 303 ~~~~l~~r~~---~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
..++++||+. ++++++++.++..++++..+...+++++++++++|++.+ .||+|.++++|+.....+..++ ..||
T Consensus 142 ~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~~~~~-~~it 219 (229)
T PRK06893 142 KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRL-DRDMHTLFDALDLLDKASLQAQ-RKLT 219 (229)
T ss_pred cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcC-CCCC
Confidence 3478999996 899999999999999999999999999999999999999 9999999999998854333334 4699
Q ss_pred HHHHHHHHH
Q psy2778 380 KQDILEVST 388 (409)
Q Consensus 380 ~~~v~~~~~ 388 (409)
...|+++++
T Consensus 220 ~~~v~~~L~ 228 (229)
T PRK06893 220 IPFVKEILG 228 (229)
T ss_pred HHHHHHHhc
Confidence 999998865
No 96
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.74 E-value=5.3e-18 Score=142.60 Aligned_cols=126 Identities=26% Similarity=0.375 Sum_probs=91.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccccccccccC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELTPVETE 90 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~~~~~~ 90 (409)
|||+||||||||++|+++|+.++. +++.++++++.+.+.++.+ .+.+.|+++... ..|++|||||+|.+.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~--~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~vl~iDe~d~l~~~~~~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF--PFIEIDGSELISSYAGDSEQKIRDFFKKAKKS--AKPCVLFIDEIDKLFPKSQP 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS--EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT--STSEEEEEETGGGTSHHCST
T ss_pred CEEECcCCCCeeHHHHHHHhhccc--cccccccccccccccccccccccccccccccc--ccceeeeeccchhccccccc
Confidence 699999999999999999999985 9999999999988888887 889999998642 14999999999999887722
Q ss_pred CCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 91 NPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 91 ~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
.........+..++..+.... -....+++|++| +.++.+++...+ +||+..
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~-------------------~~~~~~~vI~tt-n~~~~i~~~l~~-~rf~~~ 127 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPS-------------------SKNSRVIVIATT-NSPDKIDPALLR-SRFDRR 127 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTT-------------------TTSSSEEEEEEE-SSGGGSCHHHHS-TTSEEE
T ss_pred ccccccccccceeeecccccc-------------------cccccceeEEee-CChhhCCHhHHh-CCCcEE
Confidence 211122223333333222221 112335555555 568899988888 999965
No 97
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=4.1e-17 Score=170.20 Aligned_cols=122 Identities=30% Similarity=0.356 Sum_probs=105.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||+|.++.+ +++.|++.+|++.. .+||+.++. .+.++..++|||..+.|++++.
T Consensus 122 kVvIIDEa~~L~~~-------a~naLLk~LEepp~~tv~Il~t~~-------------~~kll~tI~SR~~~i~f~~l~~ 181 (585)
T PRK14950 122 KVYIIDEVHMLSTA-------AFNALLKTLEEPPPHAIFILATTE-------------VHKVPATILSRCQRFDFHRHSV 181 (585)
T ss_pred EEEEEeChHhCCHH-------HHHHHHHHHhcCCCCeEEEEEeCC-------------hhhhhHHHHhccceeeCCCCCH
Confidence 69999999999998 99999999999754 556666532 3567778999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
.++.+.+..++.++|+.++++++.+|++.+ +||+|.|++.|+....+ +...|+.++|+.+++.
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s-~Gdlr~al~~LekL~~y----~~~~It~e~V~~ll~~ 244 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAA-TGSMRDAENLLQQLATT----YGGEISLSQVQSLLGI 244 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHhcC
Confidence 999999999999999999999999999999 99999999999987654 2356999998876553
No 98
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=2.3e-17 Score=157.23 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=75.2
Q ss_pred hHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCH
Q psy2778 264 TFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDD 341 (409)
Q Consensus 264 ~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~ 341 (409)
.++.|++.||+... .++|++++.. .....+.+.+.+++|+ ..+.|++|+.+|+.+|++..+++.+..+++
T Consensus 146 ~~~~Ll~~le~~~~~~~vI~a~~~~--------~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~ 217 (284)
T TIGR02880 146 AIEILLQVMENQRDDLVVILAGYKD--------RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSA 217 (284)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcH--------HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCH
Confidence 55666777776544 4555555321 1112234567899999 579999999999999999999999999999
Q ss_pred HHHHHHHHh-------cCCccHHHHHHHHHHHHHHH
Q psy2778 342 EALVTLSEI-------GTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 342 ~~l~~I~~~-------s~~g~~R~al~ll~~~~~~a 370 (409)
+++..+.++ ..-|++|..-++++.+....
T Consensus 218 ~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 218 EAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 999998877 44689999999999998653
No 99
>KOG0735|consensus
Probab=99.74 E-value=5.7e-16 Score=156.35 Aligned_cols=327 Identities=22% Similarity=0.269 Sum_probs=226.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC--CccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN--KVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~--~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+.+.+|||+||+|||||.|++++++++.. ..++..++++.+.+....... .+..+|..+. ..+|+||++|++|.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~---~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL---WYAPSIIVLDDLDC 505 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHH---hhCCcEEEEcchhh
Confidence 45689999999999999999999999853 257888999999888776666 5677777775 57999999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
|.+.... ..+..+ ...+.+ ..++.++.+.-.+.+..+.+++|.+....+.+....+++|+
T Consensus 506 l~~~s~~-e~~q~~-~~~~rl---------------a~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq--- 565 (952)
T KOG0735|consen 506 LASASSN-ENGQDG-VVSERL---------------AAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQ--- 565 (952)
T ss_pred hhccCcc-cCCcch-HHHHHH---------------HHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceE---
Confidence 9872221 111111 111111 12455666666777888899999999999999999999999
Q ss_pred eeeccCCCccHHHHHHHHhhc--------CHhhHHHhhcCCCC--hHHHHHHHHHHHhhhhhhhh---------HH----
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDV--------TLHDLDMANAKPQG--GQDILSMVGQLIKSKKTEIT---------DK---- 220 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~--------~~~dl~~~a~~~~g--gadi~~l~~~~~~~~~~~~~---------~~---- 220 (409)
..+.+|.|+...|.+||..+ +..||+-++..|+| ..|+.-++.+++.+...+-- +.
T Consensus 566 -~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ks 644 (952)
T KOG0735|consen 566 -IVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKS 644 (952)
T ss_pred -EEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 68889999999999988754 33478889999999 99999888776654431100 00
Q ss_pred ------------------------------HHHHHHH-------------------------------------------
Q psy2778 221 ------------------------------LRKEINK------------------------------------------- 227 (409)
Q Consensus 221 ------------------------------~~~~i~~------------------------------------------- 227 (409)
..+.+.+
T Consensus 645 L~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~ 724 (952)
T KOG0735|consen 645 LKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN 724 (952)
T ss_pred HHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh
Confidence 1111111
Q ss_pred ------------HHHHHHhh----------ccccccCCcccccccccccccccCch------hhhHHHHHHHhccc---C
Q psy2778 228 ------------VVNKYIDQ----------GIAELVPGVLFIDEVHMLDLETFMPH------LETFTYLHRALESA---I 276 (409)
Q Consensus 228 ------------~~~~~~~~----------~~~~~~~gvl~ide~~~l~~~~~~~~------~~~~~~L~~~~e~~---~ 276 (409)
...+|+-. .-....|-+||+||.+.+-+. +-| .+..+-|+.+|..- .
T Consensus 725 ~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPk--RGhDsTGVTDRVVNQlLTelDG~Egl~ 802 (952)
T KOG0735|consen 725 SNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPK--RGHDSTGVTDRVVNQLLTELDGAEGLD 802 (952)
T ss_pred CCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcc--cCCCCCCchHHHHHHHHHhhccccccc
Confidence 44444421 112357789999999988763 111 34578888777643 4
Q ss_pred CceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccH
Q psy2778 277 APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTL 356 (409)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~ 356 (409)
+..|+.||.|+ +.+.|.-+-+..++|+. .+..+++.|-.+|++..+..... =++.-++.++....+-+.
T Consensus 803 GV~i~aaTsRp--------dliDpALLRpGRlD~~v--~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 803 GVYILAATSRP--------DLIDPALLRPGRLDKLV--YCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTG 871 (952)
T ss_pred eEEEEEecCCc--------cccCHhhcCCCccceee--eCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCch
Confidence 46677777664 44556666666666654 56678888999999866654433 224457888888845566
Q ss_pred HHHHHHHHHHHHHH
Q psy2778 357 RYVVQLLTPAALTA 370 (409)
Q Consensus 357 R~al~ll~~~~~~a 370 (409)
-.-..+|..|...|
T Consensus 872 ADlq~ll~~A~l~a 885 (952)
T KOG0735|consen 872 ADLQSLLYNAQLAA 885 (952)
T ss_pred hhHHHHHHHHHHHH
Confidence 67777777777655
No 100
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.74 E-value=1.6e-16 Score=154.14 Aligned_cols=121 Identities=20% Similarity=0.328 Sum_probs=101.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|.++.+ .++.|.+.++.+.. ..+|+.++. +..+...+.+||.++++++++.
T Consensus 104 ~vviiDe~~~l~~~-------~~~~L~~~le~~~~~~~lIl~~~~-------------~~~l~~~l~sr~~~~~~~~l~~ 163 (319)
T PRK00440 104 KIIFLDEADNLTSD-------AQQALRRTMEMYSQNTRFILSCNY-------------SSKIIDPIQSRCAVFRFSPLKK 163 (319)
T ss_pred eEEEEeCcccCCHH-------HHHHHHHHHhcCCCCCeEEEEeCC-------------ccccchhHHHHhheeeeCCCCH
Confidence 58999999999887 88899999997544 456666542 2345667999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++...+..+++++|+.++++++++|++.+ +||+|.|++.|+.+... ...||.++|..+.+.
T Consensus 164 ~ei~~~l~~~~~~~~~~i~~~al~~l~~~~-~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~~ 225 (319)
T PRK00440 164 EAVAERLRYIAENEGIEITDDALEAIYYVS-EGDMRKAINALQAAAAT-----GKEVTEEAVYKITGT 225 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhCC
Confidence 999999999999999999999999999999 99999999999976653 256888888877643
No 101
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.73 E-value=9.6e-17 Score=158.23 Aligned_cols=121 Identities=30% Similarity=0.395 Sum_probs=104.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||++.++.. .++.|.+.+|++.. .++|++++. +..+++.+++||..+.+++++.
T Consensus 119 ~vviidea~~l~~~-------~~~~Ll~~le~~~~~~~lIl~~~~-------------~~~l~~~l~sr~~~~~~~~~~~ 178 (355)
T TIGR02397 119 KVYIIDEVHMLSKS-------AFNALLKTLEEPPEHVVFILATTE-------------PHKIPATILSRCQRFDFKRIPL 178 (355)
T ss_pred eEEEEeChhhcCHH-------HHHHHHHHHhCCccceeEEEEeCC-------------HHHHHHHHHhheeEEEcCCCCH
Confidence 59999999999988 99999999998755 445666642 3466778999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+++..++++.|++++++++.+|++.+ +||+|.|++.|+.+..++. ..|+.++|+++.+
T Consensus 179 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~-~g~~~~a~~~lekl~~~~~----~~it~~~v~~~~~ 240 (355)
T TIGR02397 179 EDIVERLKKILDKEGIKIEDEALELIARAA-DGSLRDALSLLDQLISFGN----GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCChHHHHHHHHHHHhhcC----CCCCHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999998877642 3599998887664
No 102
>KOG0742|consensus
Probab=99.73 E-value=2.9e-17 Score=156.42 Aligned_cols=172 Identities=22% Similarity=0.351 Sum_probs=122.6
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
++++.|-++||||||||||||++|+-||...|. .+-.+++.|+..-.-....+++++|..+.. .+..-++||||+|
T Consensus 378 K~h~apfRNilfyGPPGTGKTm~ArelAr~SGl--DYA~mTGGDVAPlG~qaVTkiH~lFDWakk--S~rGLllFIDEAD 453 (630)
T KOG0742|consen 378 KKHQAPFRNILFYGPPGTGKTMFARELARHSGL--DYAIMTGGDVAPLGAQAVTKIHKLFDWAKK--SRRGLLLFIDEAD 453 (630)
T ss_pred ccccchhhheeeeCCCCCCchHHHHHHHhhcCC--ceehhcCCCccccchHHHHHHHHHHHHHhh--cccceEEEehhhH
Confidence 345666799999999999999999999999995 888999999877666667789999999973 4567789999999
Q ss_pred cccccccCCCCCCccc-hhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccc-ccccccc
Q psy2778 83 ELTPVETENPMGGYGK-TVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSD-TFAAEFD 160 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~-~~~~rfd 160 (409)
++.+.|....++...+ .++.++ ++| |-...++++++||| ++|.++ ....|+|
T Consensus 454 AFLceRnktymSEaqRsaLNAlL--fRT--------------------GdqSrdivLvlAtN----rpgdlDsAV~DRid 507 (630)
T KOG0742|consen 454 AFLCERNKTYMSEAQRSALNALL--FRT--------------------GDQSRDIVLVLATN----RPGDLDSAVNDRID 507 (630)
T ss_pred HHHHHhchhhhcHHHHHHHHHHH--HHh--------------------cccccceEEEeccC----CccchhHHHHhhhh
Confidence 9999998777655444 222221 222 34567899999997 344444 2346788
Q ss_pred ccceeeccCCCccHHHHHHHHhh-----c-----------------------CH------hhHHHhhcCCCC--hHHHHH
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQD-----V-----------------------TL------HDLDMANAKPQG--GQDILS 204 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~-----~-----------------------~~------~dl~~~a~~~~g--gadi~~ 204 (409)
.. +.+|+|..+ .|..++.. + .+ .-+...|.+|+| |.+|..
T Consensus 508 e~--veFpLPGeE--ERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiak 583 (630)
T KOG0742|consen 508 EV--VEFPLPGEE--ERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAK 583 (630)
T ss_pred he--eecCCCChH--HHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHH
Confidence 53 344555444 45443321 1 00 125688999999 999999
Q ss_pred HHHH
Q psy2778 205 MVGQ 208 (409)
Q Consensus 205 l~~~ 208 (409)
|+..
T Consensus 584 Lva~ 587 (630)
T KOG0742|consen 584 LVAS 587 (630)
T ss_pred HHHH
Confidence 9743
No 103
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=1.2e-16 Score=170.88 Aligned_cols=203 Identities=17% Similarity=0.181 Sum_probs=146.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~ 77 (409)
+.++||+||||||||++++++|+.+-. +..++.++.+.+. .+|.|+.+ +++++|+.+.. ..++|||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~---~~~~ILf 279 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK---EPNAILF 279 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc---cCCeEEE
Confidence 469999999999999999999998710 2478898988877 47888888 89999998753 3689999
Q ss_pred ecccccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccc
Q psy2778 78 EGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAA 157 (409)
Q Consensus 78 iDEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~ 157 (409)
|||+|.+++.+.... + ... ...+++..+..|.+.+|++||.
T Consensus 280 iDEih~l~~~g~~~~--~-~~~-----------------------~~~~L~~~l~~g~i~~IgaTt~------------- 320 (731)
T TIGR02639 280 IDEIHTIVGAGATSG--G-SMD-----------------------ASNLLKPALSSGKLRCIGSTTY------------- 320 (731)
T ss_pred EecHHHHhccCCCCC--c-cHH-----------------------HHHHHHHHHhCCCeEEEEecCH-------------
Confidence 999999977543211 0 000 1112223344566666666651
Q ss_pred cccccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhcc
Q psy2778 158 EFDLEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGI 237 (409)
Q Consensus 158 rfd~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 237 (409)
T Consensus 321 -------------------------------------------------------------------------------- 320 (731)
T TIGR02639 321 -------------------------------------------------------------------------------- 320 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecC
Q psy2778 238 AELVPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTT 317 (409)
Q Consensus 238 ~~~~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~ 317 (409)
. .+++++...+.+.+||..+.++
T Consensus 321 -------------------------------------------------~--------e~~~~~~~d~al~rRf~~i~v~ 343 (731)
T TIGR02639 321 -------------------------------------------------E--------EYKNHFEKDRALSRRFQKIDVG 343 (731)
T ss_pred -------------------------------------------------H--------HHHHHhhhhHHHHHhCceEEeC
Confidence 0 1222334455699999999999
Q ss_pred CCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHh----CCCCccHHHHH
Q psy2778 318 PYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRS-----TLRYVVQLLTPAALTAKTN----GRTAISKQDIL 384 (409)
Q Consensus 318 ~~~~~e~~~il~~~~~~----~~~~i~~~~l~~I~~~s~~g-----~~R~al~ll~~~~~~a~~~----~~~~I~~~~v~ 384 (409)
+++.++..+|++..... .++.++++++.+++++|.+- -|+.|+.+|+.++...... ....|+.++|.
T Consensus 344 ~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~ 423 (731)
T TIGR02639 344 EPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIE 423 (731)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHH
Confidence 99999999999966543 47899999999999998321 3899999999887654332 13459999998
Q ss_pred HHHHhc
Q psy2778 385 EVSTLF 390 (409)
Q Consensus 385 ~~~~~~ 390 (409)
.+...+
T Consensus 424 ~~i~~~ 429 (731)
T TIGR02639 424 NVVAKM 429 (731)
T ss_pred HHHHHH
Confidence 887655
No 104
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.5e-15 Score=153.52 Aligned_cols=341 Identities=23% Similarity=0.327 Sum_probs=238.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.+..++++++++||||||||++++++|.+ +. .+..+++++..+++.+.++ .+...|..+.. .+|+++++||+|
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~ 86 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GA--EFLSINGPEILSKYVGESELRLRELFEEAEK---LAPSIIFIDEID 86 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cC--cccccCcchhhhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhh
Confidence 46678899999999999999999999999 54 4599999999999999998 89999999863 578999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
.+.+.+.........+.++++...++ ++..+. +.+.+.++.+..++++..++++|+.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~l~~~~d---------------------~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (494)
T COG0464 87 ALAPKRSSDQGEVERRVVAQLLALMD---------------------GLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDRE 144 (494)
T ss_pred hcccCccccccchhhHHHHHHHHhcc---------------------cccCCc-eEEEeecCCccccChhHhCcccccee
Confidence 99998877222233334444433222 222455 55555777999999999999999965
Q ss_pred ceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH-hhhhhh----------------
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI-KSKKTE---------------- 216 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~-~~~~~~---------------- 216 (409)
+..+.++...+.++++..+. .+++.++..+.| ++++..+|..+. ......
T Consensus 145 ----~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 220 (494)
T COG0464 145 ----IEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFE 220 (494)
T ss_pred ----eecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHH
Confidence 33333355556666655432 257788888888 999998884321 111110
Q ss_pred -----------------------------hhHHHHHHHHH----------------------------------------
Q psy2778 217 -----------------------------ITDKLRKEINK---------------------------------------- 227 (409)
Q Consensus 217 -----------------------------~~~~~~~~i~~---------------------------------------- 227 (409)
..+.+.+.+..
T Consensus 221 ~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~ 300 (494)
T COG0464 221 EALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES 300 (494)
T ss_pred HHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC
Confidence 00011111110
Q ss_pred -----------HHHHHHhhcc---------c-cccCCccccccccccccccc-Cch---hhhHHHHHHHh---cccCCce
Q psy2778 228 -----------VVNKYIDQGI---------A-ELVPGVLFIDEVHMLDLETF-MPH---LETFTYLHRAL---ESAIAPI 279 (409)
Q Consensus 228 -----------~~~~~~~~~~---------~-~~~~gvl~ide~~~l~~~~~-~~~---~~~~~~L~~~~---e~~~~~~ 279 (409)
.+.+|+-+.. + ...|.++|+||++.+-...- -.. .+..+-|+..| |.....+
T Consensus 301 ~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 301 RSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred CCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 3334432211 1 36789999999997755310 011 25666677766 4434455
Q ss_pred EEEecCcceeeecccccCCCCCCCchhhhh--hh-heeecCCCCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHhcCCcc
Q psy2778 280 VIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL-LIIRTTPYNQKDMEAIIKLRANTEGHV-LDDEALVTLSEIGTRST 355 (409)
Q Consensus 280 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--r~-~~i~~~~~~~~e~~~il~~~~~~~~~~-i~~~~l~~I~~~s~~g~ 355 (409)
+|.+||+ |+.++++++. |+ .++.+++++.++-.++++......+.. .++-.++.+++.+.+.+
T Consensus 381 vi~aTN~-------------p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~s 447 (494)
T COG0464 381 VIAATNR-------------PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYS 447 (494)
T ss_pred EEecCCC-------------ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCC
Confidence 6667764 5677777777 88 478899999999999999888866664 45677888898886678
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCccHHHHHHHHHh
Q psy2778 356 LRYVVQLLTPAALTAKTNG-RTAISKQDILEVSTL 389 (409)
Q Consensus 356 ~R~al~ll~~~~~~a~~~~-~~~I~~~~v~~~~~~ 389 (409)
....-.+++.|...+..+. ...|+.+|+..+..-
T Consensus 448 gadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 448 GADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 8999999999998887665 667999999888763
No 105
>PRK08727 hypothetical protein; Validated
Probab=99.71 E-value=5.2e-16 Score=143.96 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCCchhhhhh---hheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCC
Q psy2778 301 HGIPLDLLDR---LLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTA 377 (409)
Q Consensus 301 ~~~~~~l~~r---~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~ 377 (409)
..+.++++|| ++++.+++++.+++.++++.+++..++.++++++++|++.+ +||+|.++++|+.+...+...+ ..
T Consensus 141 ~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~-~rd~r~~l~~L~~l~~~~~~~~-~~ 218 (233)
T PRK08727 141 ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHG-ERELAGLVALLDRLDRESLAAK-RR 218 (233)
T ss_pred hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 3457889999 88999999999999999999999999999999999999999 8999999999998876555444 47
Q ss_pred ccHHHHHHHHH
Q psy2778 378 ISKQDILEVST 388 (409)
Q Consensus 378 I~~~~v~~~~~ 388 (409)
||.+.+++++.
T Consensus 219 it~~~~~~~l~ 229 (233)
T PRK08727 219 VTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHh
Confidence 99999998875
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=1.4e-15 Score=161.23 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=93.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-CC-------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL-GN-------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l-~~-------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~ 77 (409)
+.++||+||||||||++|+++|+.+ .. +..++.++.+.+. .+|.|+.+ ++.++|..+. ...++|||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~---~~~~~ILf 283 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE---QDTNSILF 283 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHH---hcCCCEEE
Confidence 4689999999999999999999875 11 1355666665555 35677777 7888888764 24688999
Q ss_pred ecccccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccc----cccCccc
Q psy2778 78 EGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAV----KRQGRSD 153 (409)
Q Consensus 78 iDEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~----~~~~~~~ 153 (409)
|||+|.+.+.+.... + .... .++++.-+..|.+.+|++||... ...++++
T Consensus 284 IDEIh~L~g~g~~~~--g-~~d~-----------------------~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 284 IDEIHTIIGAGAASG--G-QVDA-----------------------ANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred eccHHHHhccCCCCC--c-HHHH-----------------------HHHHHHHHhCCCeEEEecCChHHHHHHhhccHHH
Confidence 999999987653211 1 1111 11223334578899999998532 3445555
Q ss_pred cccccccccceeeccCCCccHHHHHHHHhh
Q psy2778 154 TFAAEFDLEAEEYVPLPKGDVHKKKEVIQD 183 (409)
Q Consensus 154 ~~~~rfd~~~~~~i~~p~~~~~~r~~il~~ 183 (409)
. +||+ .|++++|+...+..|++.
T Consensus 338 ~--rRFq-----~I~v~ePs~~~~~~IL~~ 360 (758)
T PRK11034 338 A--RRFQ-----KIDITEPSIEETVQIING 360 (758)
T ss_pred H--hhCc-----EEEeCCCCHHHHHHHHHH
Confidence 4 4886 366666677777777753
No 107
>PRK06620 hypothetical protein; Validated
Probab=99.70 E-value=6.7e-16 Score=141.08 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=92.5
Q ss_pred cccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhh---eeecCCCC
Q psy2778 244 VLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL---IIRTTPYN 320 (409)
Q Consensus 244 vl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~---~i~~~~~~ 320 (409)
+++|||+|.+..+ +.|+.++...|+. .++++.++ +..+...+ ++++||+. ++.+++++
T Consensus 88 ~lliDdi~~~~~~------~lf~l~N~~~e~g-~~ilits~-----------~~p~~l~l-~~L~SRl~~gl~~~l~~pd 148 (214)
T PRK06620 88 AFIIEDIENWQEP------ALLHIFNIINEKQ-KYLLLTSS-----------DKSRNFTL-PDLSSRIKSVLSILLNSPD 148 (214)
T ss_pred EEEEeccccchHH------HHHHHHHHHHhcC-CEEEEEcC-----------CCccccch-HHHHHHHhCCceEeeCCCC
Confidence 5566666644322 1444444455553 35555554 23334456 78999998 99999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
.+++..+++..++..++.++++++++|++.+ .||+|.++++|+.....+...+ ..||.+.+++++
T Consensus 149 ~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 149 DELIKILIFKHFSISSVTISRQIIDFLLVNL-PREYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 9999999999998889999999999999999 9999999999999766555444 569999988764
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.69 E-value=9.5e-16 Score=159.34 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=90.5
Q ss_pred cccccccccccccccCchhhhHHHHHHHhc---ccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhhe--eecC
Q psy2778 244 VLFIDEVHMLDLETFMPHLETFTYLHRALE---SAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI--IRTT 317 (409)
Q Consensus 244 vl~ide~~~l~~~~~~~~~~~~~~L~~~~e---~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~--i~~~ 317 (409)
++++||+|.|... ....|+..++ ...+. ++|+.+|. ...+..+.+.+.|||.. +.|+
T Consensus 872 IIILDEID~L~kK-------~QDVLYnLFR~~~~s~SKLiLIGISNd----------lDLperLdPRLRSRLg~eeIvF~ 934 (1164)
T PTZ00112 872 ILIIDEIDYLITK-------TQKVLFTLFDWPTKINSKLVLIAISNT----------MDLPERLIPRCRSRLAFGRLVFS 934 (1164)
T ss_pred EEEeehHhhhCcc-------HHHHHHHHHHHhhccCCeEEEEEecCc----------hhcchhhhhhhhhccccccccCC
Confidence 7788888887654 3333443333 22333 34455542 22344555678888854 8899
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 318 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 318 ~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s--~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
||+.+++.+||+.++......++++++++|++.+ ..||+|.||.+|+.|...+ +...|+++||.++..
T Consensus 935 PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik---egskVT~eHVrkAle 1004 (1164)
T PTZ00112 935 PYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK---RGQKIVPRDITEATN 1004 (1164)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHH
Confidence 9999999999999998655569999999999843 2699999999999998753 345899999998884
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=6.3e-15 Score=159.59 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=95.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccce
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKE 75 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~i 75 (409)
..+.++||+||||||||++|+++|+.+.. ..+++.++.+.+. .+|.|+.+ ++.++|+.+.. ..++|
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~---~~~~I 274 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE---NNNII 274 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh---cCCeE
Confidence 34579999999999999999999998731 2489999998876 46788877 88999988853 46889
Q ss_pred EEecccccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEccccccc----ccCc
Q psy2778 76 VYEGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVK----RQGR 151 (409)
Q Consensus 76 i~iDEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~----~~~~ 151 (409)
|||||+|.+.+.+.... + .. ...+++..+..|.+.+|++||.... ..++
T Consensus 275 LfiDEih~l~~~g~~~g--~--~~-----------------------~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 275 LVIDEVHTLIGAGAAEG--A--ID-----------------------AANILKPALARGELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred EEEecHHHHhcCCCCCC--c--cc-----------------------HHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCH
Confidence 99999999987643211 1 01 1233445567889999999994432 2344
Q ss_pred cccccccccccceeeccCCCccHHHHHHHH
Q psy2778 152 SDTFAAEFDLEAEEYVPLPKGDVHKKKEVI 181 (409)
Q Consensus 152 ~~~~~~rfd~~~~~~i~~p~~~~~~r~~il 181 (409)
++ .+||. .+++++++......++
T Consensus 328 aL--~rRf~-----~I~v~ep~~~e~~aIL 350 (821)
T CHL00095 328 AL--ERRFQ-----PVYVGEPSVEETIEIL 350 (821)
T ss_pred HH--Hhcce-----EEecCCCCHHHHHHHH
Confidence 43 33665 2344545544444444
No 110
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.66 E-value=2e-16 Score=147.75 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=100.1
Q ss_pred CcceeeecccccCCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHhcCCccHHH
Q psy2778 285 NRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTE------GHVLDDEALVTLSEIGTRSTLRY 358 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~------~~~i~~~~l~~I~~~s~~g~~R~ 358 (409)
++.+++++.| |+||.|.+.+.|+|||.++.+++++.+++..++++....+ ++.++++++++|++.| +||+|.
T Consensus 6 ~G~i~LIGAT-TENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a-~GDaR~ 83 (300)
T PRK14700 6 SGKIILIGAT-TENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN-EGDCRK 83 (300)
T ss_pred CCcEEEEeec-CCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc-CCHHHH
Confidence 5555666667 9999999999999999999999999999999999777642 4789999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy2778 359 VVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARILTENKDKF 407 (409)
Q Consensus 359 al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 407 (409)
|+|+||.+...+...+...||.++++++.+ ++.++|++.||.||
T Consensus 84 aLN~LE~a~~~~~~~~~~~it~~~~~~~~~-----~~~~~yDk~gd~HY 127 (300)
T PRK14700 84 ILNLLERMFLISTRGDEIYLNKELFDQAVG-----ETSRDFHREGKEFY 127 (300)
T ss_pred HHHHHHHHHhhccccCCCccCHHHHHHHHh-----HHHhcccCCcchhH
Confidence 999999987543222223599999999998 89999999999999
No 111
>KOG0744|consensus
Probab=99.66 E-value=2.1e-16 Score=146.79 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=107.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC-------CCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccce--EEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG-------NKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKE--VYE 78 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~-------~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~i--i~i 78 (409)
++-+|+|||||||||+|++|+|+.+. ....++++|+..++++|.+++. .+.++|++...+-.-..+. ++|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 57799999999999999999999983 2347899999999999999998 5688999887654444444 579
Q ss_pred cccccccccccCCCC----CCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccc
Q psy2778 79 GEVTELTPVETENPM----GGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDT 154 (409)
Q Consensus 79 DEid~i~~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~ 154 (409)
||++++...|....+ +..-|.++.++.+++ .++..+-++|++|+|-...++.++.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD---------------------rlK~~~NvliL~TSNl~~siD~AfV 315 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLD---------------------RLKRYPNVLILATSNLTDSIDVAFV 315 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH---------------------HhccCCCEEEEeccchHHHHHHHhh
Confidence 999999988744332 222366666666554 3456678899999988877776552
Q ss_pred ccccccccceeeccCCCccHHHHHHHHhhc
Q psy2778 155 FAAEFDLEAEEYVPLPKGDVHKKKEVIQDV 184 (409)
Q Consensus 155 ~~~rfd~~~~~~i~~p~~~~~~r~~il~~~ 184 (409)
. |-| +..+|..|. ...+.+|++.+
T Consensus 316 D--RAD--i~~yVG~Pt--~~ai~~Ilksc 339 (423)
T KOG0744|consen 316 D--RAD--IVFYVGPPT--AEAIYEILKSC 339 (423)
T ss_pred h--Hhh--heeecCCcc--HHHHHHHHHHH
Confidence 2 333 335666664 44456666544
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.65 E-value=2.8e-15 Score=152.33 Aligned_cols=86 Identities=24% Similarity=0.217 Sum_probs=76.3
Q ss_pred Cchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 303 IPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 303 ~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+.+.++||+ +++.+++++.++..++++.+++..++.++++++++|++.+ .||+|.....|..+..++...+ ..||
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~R~l~~~l~~l~~~~~~~~-~~it 338 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNI-TSNVRELEGALNRLIAYASLTG-KPIT 338 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc-CCCHHHHHHHHHHHHHHHHhhC-CCCC
Confidence 556789999 6899999999999999999999999999999999999999 9999999999999988876654 4589
Q ss_pred HHHHHHHHHhc
Q psy2778 380 KQDILEVSTLF 390 (409)
Q Consensus 380 ~~~v~~~~~~~ 390 (409)
.+.+++++.-+
T Consensus 339 ~~~~~~~l~~~ 349 (450)
T PRK00149 339 LELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHh
Confidence 99998888743
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=99.65 E-value=5.9e-15 Score=136.90 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=74.1
Q ss_pred CCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCc
Q psy2778 302 GIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378 (409)
Q Consensus 302 ~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I 378 (409)
...++++||+ +++.+++++.++...+++.++...++.++++++++|++.+ .+|+|.+.++|+.....+...+ ..|
T Consensus 146 ~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~l~~~-~~i 223 (234)
T PRK05642 146 IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRG-TRSMSALFDLLERLDQASLQAQ-RKL 223 (234)
T ss_pred ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcC-CcC
Confidence 3467799999 8999999999999999998898889999999999999999 9999999999999875443333 569
Q ss_pred cHHHHHHHHH
Q psy2778 379 SKQDILEVST 388 (409)
Q Consensus 379 ~~~~v~~~~~ 388 (409)
|...+++++.
T Consensus 224 t~~~~~~~L~ 233 (234)
T PRK05642 224 TIPFLKETLG 233 (234)
T ss_pred CHHHHHHHhc
Confidence 9999988764
No 114
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=3.4e-15 Score=145.88 Aligned_cols=101 Identities=16% Similarity=0.263 Sum_probs=87.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|.++.. +.+.|+|.+|.+.+ .++++.++. +..+++.++|||..+++.|++.
T Consensus 143 rVviIDeAd~l~~~-------aanaLLk~LEEpp~~~~fiLit~~-------------~~~llptIrSRc~~i~l~pl~~ 202 (351)
T PRK09112 143 RIVIIDPADDMNRN-------AANAILKTLEEPPARALFILISHS-------------SGRLLPTIRSRCQPISLKPLDD 202 (351)
T ss_pred eEEEEEchhhcCHH-------HHHHHHHHHhcCCCCceEEEEECC-------------hhhccHHHHhhccEEEecCCCH
Confidence 69999999999999 99999999999755 556666642 4566788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPA 366 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~ 366 (409)
+++.++|...+...+ ++++++..|++.| +|++|.|+++++..
T Consensus 203 ~~~~~~L~~~~~~~~--~~~~~~~~i~~~s-~G~pr~Al~ll~~~ 244 (351)
T PRK09112 203 DELKKALSHLGSSQG--SDGEITEALLQRS-KGSVRKALLLLNYG 244 (351)
T ss_pred HHHHHHHHHhhcccC--CCHHHHHHHHHHc-CCCHHHHHHHHhcC
Confidence 999999997654444 8899999999999 99999999999654
No 115
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=8.2e-15 Score=146.59 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=98.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ce-EEEecCcceeeecccccCCCCCCCchhhhhhh--heeecCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PI-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTP 318 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~--~~i~~~~ 318 (409)
-+++|||+|.+... ...+.+..|.+.++.... ++ +|+.+|.. .....+.+.+.+|+ ..+.|+|
T Consensus 140 ~viviDE~d~l~~~---~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~----------~~~~~l~~~~~s~~~~~~i~f~p 206 (394)
T PRK00411 140 LIVALDDINYLFEK---EGNDVLYSLLRAHEEYPGARIGVIGISSDL----------TFLYILDPRVKSVFRPEEIYFPP 206 (394)
T ss_pred EEEEECCHhHhhcc---CCchHHHHHHHhhhccCCCeEEEEEEECCc----------chhhhcCHHHHhcCCcceeecCC
Confidence 48999999988610 011256666666654332 33 55555531 12233455567776 4689999
Q ss_pred CCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 319 YNQKDMEAIIKLRANTE--GHVLDDEALVTLSEIGT--RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~~--~~~i~~~~l~~I~~~s~--~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
|+.+++.++++.+++.. ...++++++++|++.+. .|++|+|+++|..|...|..++...|+.+||.++....
T Consensus 207 y~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 207 YTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999999888643 34689999999988863 47899999999999999988888899999999888654
No 116
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.64 E-value=6.5e-15 Score=145.80 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=95.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHh--ccc-CCc-eEEEecCcceeeecccccCCCCCCCchhhhhhh--heeec
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRAL--ESA-IAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRT 316 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~--e~~-~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~--~~i~~ 316 (409)
.+++|||+|.+... ..+.+..|.+.. ++. .++ .+|+.+|.. .....+.+.+.+|+ ..+.|
T Consensus 131 ~vlvIDE~d~L~~~----~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~----------~~~~~l~~~~~s~~~~~~i~f 196 (365)
T TIGR02928 131 LIIVLDEIDYLVGD----DDDLLYQLSRARSNGDLDNAKVGVIGISNDL----------KFRENLDPRVKSSLCEEEIIF 196 (365)
T ss_pred EEEEECchhhhccC----CcHHHHhHhccccccCCCCCeEEEEEEECCc----------chHhhcCHHHhccCCcceeee
Confidence 58999999999421 011345555552 222 234 356666532 11224556677887 36899
Q ss_pred CCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 317 TPYNQKDMEAIIKLRANT--EGHVLDDEALVTLSEIGT--RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 317 ~~~~~~e~~~il~~~~~~--~~~~i~~~~l~~I~~~s~--~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+||+.+++.++++.+++. .+..+++++++++++++. .|++|+|+++|+.|...|..++...|+.+||..+...
T Consensus 197 ~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 197 PPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999999999998863 334589999998877652 5999999999999999898888889999999988754
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.63 E-value=2.6e-14 Score=132.09 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=73.9
Q ss_pred Cchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 303 IPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 303 ~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+..+++||+ ..++++|+++++...+++..+...++.++++++++|++.+ .||+|.+.++|+....+|...+ ..||
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~~~~~-~~i~ 215 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYSLEQK-RPVT 215 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 457789896 7899999999999999998888999999999999999977 9999999999999877775544 6799
Q ss_pred HHHHHHHHH
Q psy2778 380 KQDILEVST 388 (409)
Q Consensus 380 ~~~v~~~~~ 388 (409)
...++++++
T Consensus 216 ~~~~~~~l~ 224 (227)
T PRK08903 216 LPLLREMLA 224 (227)
T ss_pred HHHHHHHHh
Confidence 999998874
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.63 E-value=7.9e-15 Score=158.36 Aligned_cols=197 Identities=18% Similarity=0.189 Sum_probs=138.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~ 77 (409)
..+++|+||||||||++++.+|+.+.. ..+++.++.+.+. .++.|+.+ +++++|..+.. ...++|||
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~--~~~~~ILf 285 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA--SPQPIILF 285 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh--cCCCeEEE
Confidence 359999999999999999999998731 1246777776665 36778887 89999998853 24688999
Q ss_pred ecccccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccc
Q psy2778 78 EGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAA 157 (409)
Q Consensus 78 iDEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~ 157 (409)
|||++.+.+.+.... + .. . ..+++..+..|++.+|++||..
T Consensus 286 IDEih~l~~~g~~~~--~-~d-~-----------------------~n~Lkp~l~~G~l~~IgaTT~~------------ 326 (852)
T TIGR03345 286 IDEAHTLIGAGGQAG--Q-GD-A-----------------------ANLLKPALARGELRTIAATTWA------------ 326 (852)
T ss_pred EeChHHhccCCCccc--c-cc-H-----------------------HHHhhHHhhCCCeEEEEecCHH------------
Confidence 999999987643211 0 00 0 1122233456667777666610
Q ss_pred cccccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhcc
Q psy2778 158 EFDLEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGI 237 (409)
Q Consensus 158 rfd~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 237 (409)
T Consensus 327 -------------------------------------------------------------------------------- 326 (852)
T TIGR03345 327 -------------------------------------------------------------------------------- 326 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecC
Q psy2778 238 AELVPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTT 317 (409)
Q Consensus 238 ~~~~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~ 317 (409)
.+++.+...+.|++||.+|.++
T Consensus 327 ----------------------------------------------------------e~~~~~~~d~AL~rRf~~i~v~ 348 (852)
T TIGR03345 327 ----------------------------------------------------------EYKKYFEKDPALTRRFQVVKVE 348 (852)
T ss_pred ----------------------------------------------------------HHhhhhhccHHHHHhCeEEEeC
Confidence 1233445566799999999999
Q ss_pred CCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHh-CCCCccHHHHH
Q psy2778 318 PYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRS-----TLRYVVQLLTPAALTAKTN-GRTAISKQDIL 384 (409)
Q Consensus 318 ~~~~~e~~~il~~~~~~----~~~~i~~~~l~~I~~~s~~g-----~~R~al~ll~~~~~~a~~~-~~~~I~~~~v~ 384 (409)
+++.++..+||+..... .++.++|+++..++++|.+- =|-.|+.+|+.|+...... ....+..+++.
T Consensus 349 eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~ 425 (852)
T TIGR03345 349 EPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLR 425 (852)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence 99999999997654432 57999999999999998322 4889999999988655432 23344444443
No 119
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.63 E-value=1.7e-14 Score=133.16 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=71.4
Q ss_pred hhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHH
Q psy2778 305 LDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 381 (409)
Q Consensus 305 ~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~ 381 (409)
+++.+|+ ..++++|++.++...+++..+.+.+++++++++.+|++.. .|++|.+.++++.+..++...+ +.|+.+
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~~~-~~i~~~ 219 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLAAK-RKITIP 219 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhC-CCCCHH
Confidence 6788887 4799999999999999998888889999999999999986 9999999999999887665544 579999
Q ss_pred HHHHHH
Q psy2778 382 DILEVS 387 (409)
Q Consensus 382 ~v~~~~ 387 (409)
.|++++
T Consensus 220 ~~~~~~ 225 (226)
T TIGR03420 220 FVKEVL 225 (226)
T ss_pred HHHHHh
Confidence 998764
No 120
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.63 E-value=2e-14 Score=139.55 Aligned_cols=116 Identities=22% Similarity=0.175 Sum_probs=85.1
Q ss_pred Ccccccccccc-cccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 243 GVLFIDEVHML-DLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 243 gvl~ide~~~l-~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
++++|||+|.+ +.+ ....|.+.+|.+.+ ..+|+++|. +..+++.+++||..+.+++++
T Consensus 102 ~vliiDe~d~l~~~~-------~~~~L~~~le~~~~~~~~Ilt~n~-------------~~~l~~~l~sR~~~i~~~~p~ 161 (316)
T PHA02544 102 KVIIIDEFDRLGLAD-------AQRHLRSFMEAYSKNCSFIITANN-------------KNGIIEPLRSRCRVIDFGVPT 161 (316)
T ss_pred eEEEEECcccccCHH-------HHHHHHHHHHhcCCCceEEEEcCC-------------hhhchHHHHhhceEEEeCCCC
Confidence 46677777766 444 56667777777544 446666642 356788899999999999999
Q ss_pred HHHHHHHHH-------HHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q psy2778 321 QKDMEAIIK-------LRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 385 (409)
Q Consensus 321 ~~e~~~il~-------~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~ 385 (409)
.++..++++ .++.+++++++++++.++++.+ .||.|.+++.|+.... ...|+.+++..
T Consensus 162 ~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~-~~d~r~~l~~l~~~~~------~~~i~~~~l~~ 226 (316)
T PHA02544 162 KEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKN-FPDFRRTINELQRYAS------TGKIDAGILSE 226 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHc------cCCCCHHHHHH
Confidence 888776644 3455689999999999999999 8999999999985532 13466655544
No 121
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=3.9e-15 Score=143.50 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=85.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQK 322 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~ 322 (409)
.|++||+++.++.. +.++|+|+||+|...++|+.++. +..+++.++|||++++|.+++.+
T Consensus 126 kVvII~~ae~m~~~-------aaNaLLK~LEEPp~~~fILi~~~-------------~~~Ll~TI~SRcq~i~f~~l~~~ 185 (314)
T PRK07399 126 KVVVIEDAETMNEA-------AANALLKTLEEPGNGTLILIAPS-------------PESLLPTIVSRCQIIPFYRLSDE 185 (314)
T ss_pred eEEEEEchhhcCHH-------HHHHHHHHHhCCCCCeEEEEECC-------------hHhCcHHHHhhceEEecCCCCHH
Confidence 69999999999999 99999999999986677777752 46888899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHH
Q psy2778 323 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 367 (409)
Q Consensus 323 e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~ 367 (409)
++.+.|+..+..++.+ ..+..++.+| +||+|.|+++++...
T Consensus 186 ~~~~~L~~~~~~~~~~---~~~~~l~~~a-~Gs~~~al~~l~~~~ 226 (314)
T PRK07399 186 QLEQVLKRLGDEEILN---INFPELLALA-QGSPGAAIANIEQLQ 226 (314)
T ss_pred HHHHHHHHhhccccch---hHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 9999999776544332 2357888999 999999999997654
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.62 E-value=1.2e-14 Score=145.81 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=74.0
Q ss_pred Cchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 303 IPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 303 ~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+.+.++||+ +++.+++++.++..+|++.+++..++.++++++++|++.. .+|+|.....|.....+|...+ ..||
T Consensus 249 l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~r~l~~~l~~l~~~a~~~~-~~it 326 (405)
T TIGR00362 249 LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNI-RSNVRELEGALNRLLAYASLTG-KPIT 326 (405)
T ss_pred hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 445688888 5799999999999999999999999999999999999999 9999999988888888776544 5589
Q ss_pred HHHHHHHHHh
Q psy2778 380 KQDILEVSTL 389 (409)
Q Consensus 380 ~~~v~~~~~~ 389 (409)
.+.+++++.-
T Consensus 327 ~~~~~~~L~~ 336 (405)
T TIGR00362 327 LELAKEALKD 336 (405)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 123
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.62 E-value=8.6e-15 Score=143.17 Aligned_cols=326 Identities=18% Similarity=0.207 Sum_probs=172.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh-hhhhh-hhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF-SSEIK-KTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~-~~~~~-~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
.+|+++||+||||||||++|++||+.++. +|+.++++.+. ..|+| ..+ .++..|..|... + ++|.
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~--~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~---------i-~~d~ 112 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKL---------V-KEEA 112 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEeecceeecCCcccCCHHHHHHHHHHHHHHH---------H-HHHH
Confidence 45799999999999999999999999986 99999999887 47988 455 778888888631 2 4688
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCccc----ccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQ----LKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+++.+.........+.+.+++-......+... ..-...-+.+. .+.|.+
T Consensus 113 i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~---------------------------l~~g~l 165 (441)
T TIGR00390 113 IEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKK---------------------------LREGEL 165 (441)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHH---------------------------HhcCCc
Confidence 88777544333333333333211000000000 00000000111 112222
Q ss_pred c-ccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCC-hHHHHHHHHHHHhhh----h---hh-----hhHHHHHHH
Q psy2778 160 D-LEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQG-GQDILSMVGQLIKSK----K---TE-----ITDKLRKEI 225 (409)
Q Consensus 160 d-~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~g-gadi~~l~~~~~~~~----~---~~-----~~~~~~~~i 225 (409)
| +++++.++.+.+.. +..... ....+ +.++..++..++..+ . .+ ..++.+.++
T Consensus 166 dd~~iei~v~~~~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~li 232 (441)
T TIGR00390 166 DDKEIEIDVSAKMPSG------IEIMAP-------PGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLV 232 (441)
T ss_pred cCcEEEEeecCCCCCc------cccCCC-------cchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhcc
Confidence 2 23333332211000 000000 00000 111222222221000 0 00 011222222
Q ss_pred HH--HHHHHHhhccccccCCccccccccccccccc-----CchhhhHHHHHHHhcccCC--ceEEEecCcceeeecc-cc
Q psy2778 226 NK--VVNKYIDQGIAELVPGVLFIDEVHMLDLETF-----MPHLETFTYLHRALESAIA--PIVIFATNRGRCLVRG-TD 295 (409)
Q Consensus 226 ~~--~~~~~~~~~~~~~~~gvl~ide~~~l~~~~~-----~~~~~~~~~L~~~~e~~~~--~~~i~~~~~~~~~~~~-~~ 295 (409)
|. +..+-++. .=..|+.||||++-+-...- --..-.+..|++.+|...- +-..+.|.....+-.| .
T Consensus 233 d~~~v~~~a~~~---~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF- 308 (441)
T TIGR00390 233 DPEEIKQEAIDA---VEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAF- 308 (441)
T ss_pred ChHHHHHHHHHH---HHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCc-
Confidence 21 11111111 01348999999997765320 0012248899999997421 1122222222211111 2
Q ss_pred cCCCCCCCchhhhhhh-heeecCCCCHHHHHHHHHHH-----------Hhhc--CCCCCHHHHHHHHHhc-------CCc
Q psy2778 296 DIISPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLR-----------ANTE--GHVLDDEALVTLSEIG-------TRS 354 (409)
Q Consensus 296 ~~~~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~-----------~~~~--~~~i~~~~l~~I~~~s-------~~g 354 (409)
....|..+.++|..|+ .++.+++++.+++..||..- .+.+ .+.+++++++.|++.| .+.
T Consensus 309 ~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~i 388 (441)
T TIGR00390 309 QLAKPSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENI 388 (441)
T ss_pred CCCChhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhccccccc
Confidence 2234667899999999 56889999999999999421 1223 4688999999999997 366
Q ss_pred cHHHHHHHHHHHHHHHHHhC------CCCccHHHHHHHHH
Q psy2778 355 TLRYVVQLLTPAALTAKTNG------RTAISKQDILEVST 388 (409)
Q Consensus 355 ~~R~al~ll~~~~~~a~~~~------~~~I~~~~v~~~~~ 388 (409)
++|+--.+++....-+.-+. .-.|+.+.|...++
T Consensus 389 GAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 389 GARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHH
Confidence 89999999998775443221 12578888865554
No 124
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8.4e-15 Score=148.99 Aligned_cols=77 Identities=22% Similarity=0.430 Sum_probs=62.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc------hhhh---hhhhhhH-HHHHHHHHHHhhhhcccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS------EVFS---SEIKKTE-VLMENFRRAIGLRIKESK 74 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~------~l~~---~~~~~~e-~l~~~f~~a~~~~~~~~~ 74 (409)
+...+.-++|+||||+|||++++.||+.+|. .|+.++-. ++.+ .|+|... ++.+.+++|. ....
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~R--kfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~----~~NP 419 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGR--KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG----VKNP 419 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCC--CEEEEecCccccHHHhccccccccccCChHHHHHHHHhC----CcCC
Confidence 3445568899999999999999999999998 78877753 3333 6888877 8888888885 3567
Q ss_pred eEEeccccccccc
Q psy2778 75 EVYEGEVTELTPV 87 (409)
Q Consensus 75 ii~iDEid~i~~~ 87 (409)
++++||||.+..+
T Consensus 420 v~LLDEIDKm~ss 432 (782)
T COG0466 420 VFLLDEIDKMGSS 432 (782)
T ss_pred eEEeechhhccCC
Confidence 8999999999765
No 125
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.62 E-value=1.6e-14 Score=151.12 Aligned_cols=127 Identities=26% Similarity=0.252 Sum_probs=102.3
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccCC----------------------------c-eEEEecCcceeeec
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA----------------------------P-IVIFATNRGRCLVR 292 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~----------------------------~-~~i~~~~~~~~~~~ 292 (409)
.|++|+||++.||.+ .+..|.+.++...- . +++.+|+
T Consensus 266 gGvL~LDEi~~Ld~~-------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt------- 331 (615)
T TIGR02903 266 GGVLFIDEIGELDPL-------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT------- 331 (615)
T ss_pred CCeEEEeccccCCHH-------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc-------
Confidence 389999999999999 89999999986420 1 2222332
Q ss_pred ccccCCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Q psy2778 293 GTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT 372 (409)
Q Consensus 293 ~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~ 372 (409)
..+..+++.+++||..+.+.|++.+++.++++..+.+.++.+++++++.|++.+. +.|+|+++|+.+..++..
T Consensus 332 -----~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~ 404 (615)
T TIGR02903 332 -----RDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALY 404 (615)
T ss_pred -----ccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHH
Confidence 2345778889999999999999999999999999998899999999999999984 569999999988766421
Q ss_pred --------hCCCCccHHHHHHHHHh
Q psy2778 373 --------NGRTAISKQDILEVSTL 389 (409)
Q Consensus 373 --------~~~~~I~~~~v~~~~~~ 389 (409)
.+...|+.++|+++++.
T Consensus 405 ~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 405 RAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHhccCCCCeeECHHHHHHHhCC
Confidence 12347999999999864
No 126
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=8e-15 Score=145.19 Aligned_cols=96 Identities=11% Similarity=0.166 Sum_probs=81.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|.++.+ +.+.|+|+||++.. .++|+.|+. +..+++.++|||..++|++++.
T Consensus 119 kViiIDead~m~~~-------aanaLLk~LEep~~~~~fIL~a~~-------------~~~llpTIrSRc~~i~f~~~~~ 178 (394)
T PRK07940 119 RIVVIEDADRLTER-------AANALLKAVEEPPPRTVWLLCAPS-------------PEDVLPTIRSRCRHVALRTPSV 178 (394)
T ss_pred EEEEEechhhcCHH-------HHHHHHHHhhcCCCCCeEEEEECC-------------hHHChHHHHhhCeEEECCCCCH
Confidence 69999999999999 99999999999755 556666642 5788899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.+.. +. .++++.+..++..| +|+++.|+.+++
T Consensus 179 ~~i~~~L~~---~~--~~~~~~a~~la~~s-~G~~~~A~~l~~ 215 (394)
T PRK07940 179 EAVAEVLVR---RD--GVDPETARRAARAS-QGHIGRARRLAT 215 (394)
T ss_pred HHHHHHHHH---hc--CCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 999888872 22 36788899999999 999999987753
No 127
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.61 E-value=1.5e-14 Score=155.78 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=56.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh---------hhhhhhhH-HHHHHHHHHHhhhhcccceE
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF---------SSEIKKTE-VLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~---------~~~~~~~e-~l~~~f~~a~~~~~~~~~ii 76 (409)
..+.++||+||||||||++|++||+.++. +|+.++.+.+. ..|+|... .+.+.|..+. ..+.++
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~l~~--~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~----~~~~vi 418 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKALNR--KFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAK----TKNPLF 418 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcC--CeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhC----cCCCEE
Confidence 34458999999999999999999999986 78877654332 24566555 6667777663 234589
Q ss_pred Eeccccccccc
Q psy2778 77 YEGEVTELTPV 87 (409)
Q Consensus 77 ~iDEid~i~~~ 87 (409)
|+||+|.+.+.
T Consensus 419 llDEidk~~~~ 429 (775)
T TIGR00763 419 LLDEIDKIGSS 429 (775)
T ss_pred EEechhhcCCc
Confidence 99999999653
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=2.8e-14 Score=143.71 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHH---HHHHHhC
Q psy2778 301 HGIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA---LTAKTNG 374 (409)
Q Consensus 301 ~~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~---~~a~~~~ 374 (409)
..+.+.++||+ +++.+.+++.++...+++.+++..++.++++++++|+... .+|.|...+.|..++ .++...+
T Consensus 250 ~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~-~~dir~L~g~l~~l~~~~a~~~~~~ 328 (445)
T PRK12422 250 KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEAL-SSNVKSLLHALTLLAKRVAYKKLSH 328 (445)
T ss_pred hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 45677899999 7999999999999999999999999999999999999998 899999999999885 4554444
Q ss_pred CCCccHHHHHHHHHh
Q psy2778 375 RTAISKQDILEVSTL 389 (409)
Q Consensus 375 ~~~I~~~~v~~~~~~ 389 (409)
..|+.+.+++++.-
T Consensus 329 -~~i~~~~~~~~l~~ 342 (445)
T PRK12422 329 -QLLYVDDIKALLHD 342 (445)
T ss_pred -CCCCHHHHHHHHHH
Confidence 45888888888763
No 129
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.60 E-value=9.7e-15 Score=131.05 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=77.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|++.||++.. .++|+.++. +..+++.++|||.++.+.|++.
T Consensus 98 kviiide~~~l~~~-------~~~~Ll~~le~~~~~~~~il~~~~-------------~~~l~~~i~sr~~~~~~~~~~~ 157 (188)
T TIGR00678 98 RVVIIEDAERMNEA-------AANALLKTLEEPPPNTLFILITPS-------------PEKLLPTIRSRCQVLPFPPLSE 157 (188)
T ss_pred EEEEEechhhhCHH-------HHHHHHHHhcCCCCCeEEEEEECC-------------hHhChHHHHhhcEEeeCCCCCH
Confidence 69999999999998 99999999999754 556666642 2567888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYV 359 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~a 359 (409)
+++.+++... | ++++++++|+..+ +|++|+|
T Consensus 158 ~~~~~~l~~~----g--i~~~~~~~i~~~~-~g~~r~~ 188 (188)
T TIGR00678 158 EALLQWLIRQ----G--ISEEAAELLLALA-GGSPGAA 188 (188)
T ss_pred HHHHHHHHHc----C--CCHHHHHHHHHHc-CCCcccC
Confidence 9999999865 4 7899999999999 9999975
No 130
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=4.5e-14 Score=136.89 Aligned_cols=97 Identities=11% Similarity=0.159 Sum_probs=80.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++||++|.++.+ +.+.|+|+||+|.. .++|+.|+. +..+++.++|||..++|.+++.
T Consensus 108 kv~iI~~a~~m~~~-------aaNaLLK~LEEPp~~~~fiL~t~~-------------~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 108 KVVLIEPAEAMNRN-------AANALLKSLEEPSGDTVLLLISHQ-------------PSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred eEEEECChhhCCHH-------HHHHHHHHHhCCCCCeEEEEEECC-------------hhhCcHHHHhhceeeeCCCcCH
Confidence 68999999999999 99999999999866 556666642 5678899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.|..... ..+++....++.++ +|++..|+.+++
T Consensus 168 ~~~~~~L~~~~~----~~~~~~~~~~l~la-~Gsp~~A~~l~~ 205 (328)
T PRK05707 168 EESLQWLQQALP----ESDERERIELLTLA-GGSPLRALQLHE 205 (328)
T ss_pred HHHHHHHHHhcc----cCChHHHHHHHHHc-CCCHHHHHHHHC
Confidence 999998875431 24566677888999 999999988765
No 131
>KOG0743|consensus
Probab=99.58 E-value=8.1e-15 Score=142.63 Aligned_cols=139 Identities=16% Similarity=0.083 Sum_probs=93.7
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
+-|+...||+|||||||||||+++.|+|+.++.++.-++++.- +....|++++..+ ...+||+|.+||
T Consensus 229 rvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-------~~n~dLr~LL~~t-----~~kSIivIEDID 296 (457)
T KOG0743|consen 229 RVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-------KLDSDLRHLLLAT-----PNKSILLIEDID 296 (457)
T ss_pred hcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-------cCcHHHHHHHHhC-----CCCcEEEEeecc
Confidence 3588889999999999999999999999999986555555442 2222366666655 357999999999
Q ss_pred cccccccCCCC--C-----CccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccc
Q psy2778 83 ELTPVETENPM--G-----GYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTF 155 (409)
Q Consensus 83 ~i~~~~~~~~~--~-----~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~ 155 (409)
.-+-.+..... . ...-+++.++.. .||-++ .-|+-.+|.-|||++.++||++.|
T Consensus 297 cs~~l~~~~~~~~~~~~~~~~~VTlSGLLNf---iDGlwS----------------scg~ERIivFTTNh~EkLDPALlR 357 (457)
T KOG0743|consen 297 CSFDLRERRKKKKENFEGDLSRVTLSGLLNF---LDGLWS----------------SCGDERIIVFTTNHKEKLDPALLR 357 (457)
T ss_pred cccccccccccccccccCCcceeehHHhhhh---hccccc----------------cCCCceEEEEecCChhhcCHhhcC
Confidence 96543332221 1 122355555433 333222 112334444556699999999999
Q ss_pred cccccccceeeccCCCc
Q psy2778 156 AAEFDLEAEEYVPLPKG 172 (409)
Q Consensus 156 ~~rfd~~~~~~i~~p~~ 172 (409)
+||.|.++......|..
T Consensus 358 pGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 358 PGRMDMHIYMGYCTFEA 374 (457)
T ss_pred CCcceeEEEcCCCCHHH
Confidence 99999887776666644
No 132
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-14 Score=135.11 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh-hhhhhh-hH-HHHHHHHHHH-hhhhcccceEEeccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF-SSEIKK-TE-VLMENFRRAI-GLRIKESKEVYEGEVTE 83 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~-~~~~~~-~e-~l~~~f~~a~-~~~~~~~~ii~iDEid~ 83 (409)
...+|||.||.|||||.||+.||+.++ +||..-++..+. ..|+|+ .| .+.++++.+- .....+..||||||||.
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDK 173 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDK 173 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhh
Confidence 356999999999999999999999998 699999999886 478997 45 4566666553 23344678999999999
Q ss_pred ccccccC
Q psy2778 84 LTPVETE 90 (409)
Q Consensus 84 i~~~~~~ 90 (409)
|+.+..+
T Consensus 174 IarkSeN 180 (408)
T COG1219 174 IARKSEN 180 (408)
T ss_pred hhccCCC
Confidence 9887544
No 133
>PRK09087 hypothetical protein; Validated
Probab=99.57 E-value=1.1e-13 Score=127.46 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=75.8
Q ss_pred chhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccH
Q psy2778 304 PLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISK 380 (409)
Q Consensus 304 ~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~ 380 (409)
.++++||+ +++.+++++.+++.++++..++..++.++++++++|++.+ .||+|.++.+|.....++...+ ..||.
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~-~r~~~~l~~~l~~L~~~~~~~~-~~it~ 212 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRM-ERSLFAAQTIVDRLDRLALERK-SRITR 212 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhC-CCCCH
Confidence 67899999 9999999999999999999999999999999999999999 8999999999988877766545 55999
Q ss_pred HHHHHHHHh
Q psy2778 381 QDILEVSTL 389 (409)
Q Consensus 381 ~~v~~~~~~ 389 (409)
..+++++.-
T Consensus 213 ~~~~~~l~~ 221 (226)
T PRK09087 213 ALAAEVLNE 221 (226)
T ss_pred HHHHHHHHh
Confidence 999998864
No 134
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=8e-14 Score=138.73 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=61.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh-hhhhhhhH--HHHHHHHHHHh-hhhcccceEEeccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF-SSEIKKTE--VLMENFRRAIG-LRIKESKEVYEGEVTE 83 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~-~~~~~~~e--~l~~~f~~a~~-~~~~~~~ii~iDEid~ 83 (409)
+..++||+||||||||++|+++|+.+++ ||+.++++.+. ..|+|... .+...++.+.. .....++||||||||.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~--pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdk 184 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDV--PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDK 184 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC--CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhh
Confidence 4589999999999999999999999986 99999998875 35777643 34555443321 2234689999999999
Q ss_pred ccccc
Q psy2778 84 LTPVE 88 (409)
Q Consensus 84 i~~~~ 88 (409)
+.+++
T Consensus 185 l~~~~ 189 (412)
T PRK05342 185 IARKS 189 (412)
T ss_pred hcccc
Confidence 98774
No 135
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=1.1e-13 Score=139.73 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=74.1
Q ss_pred CCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhC-C
Q psy2778 302 GIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGH--VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNG-R 375 (409)
Q Consensus 302 ~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~--~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~-~ 375 (409)
.+.+.++||+ +++.+++++.++..++++.+++..|+ .++++++++|++.+ .||+|.++++|.++...+.... .
T Consensus 255 ~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~-~gd~R~L~gaL~~l~~~a~~~~~~ 333 (450)
T PRK14087 255 GFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYY-SDDVRKIKGSVSRLNFWSQQNPEE 333 (450)
T ss_pred hccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHhcccCC
Confidence 4557788988 48999999999999999999988775 79999999999999 9999999999999986665432 2
Q ss_pred CCccHHHHHHHHHh
Q psy2778 376 TAISKQDILEVSTL 389 (409)
Q Consensus 376 ~~I~~~~v~~~~~~ 389 (409)
..|+.+.|++++.-
T Consensus 334 ~~it~~~v~~~l~~ 347 (450)
T PRK14087 334 KIITIEIVSDLFRD 347 (450)
T ss_pred CCCCHHHHHHHHhh
Confidence 56999999888753
No 136
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=9.8e-14 Score=140.04 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=74.4
Q ss_pred Cchhhhhhhh---eeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 303 IPLDLLDRLL---IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 303 ~~~~l~~r~~---~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+...++||+. ++.+++++.++...|++..++..+++++++++++|++.+ .||.|.....|.....++...+ ..||
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~-~~~~R~L~g~l~~l~~~~~~~~-~~it 321 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETTG-EEVD 321 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 3445888886 899999999999999999999999999999999999999 9999999999998887776655 4588
Q ss_pred HHHHHHHHHhc
Q psy2778 380 KQDILEVSTLF 390 (409)
Q Consensus 380 ~~~v~~~~~~~ 390 (409)
.+.+++++.-+
T Consensus 322 ~~~a~~~L~~~ 332 (440)
T PRK14088 322 LKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHH
Confidence 88888887643
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=1.6e-13 Score=129.51 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=91.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-----------------CceEEEecCcceeeecccccCCCCCCCch
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-----------------APIVIFATNRGRCLVRGTDDIISPHGIPL 305 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
+++++||++.++++ .++.|+..||... ...+|.++|.. .+.-...+|.
T Consensus 107 ~~lllDEi~r~~~~-------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~--------~~~g~~~l~~ 171 (262)
T TIGR02640 107 FTLVYDEFTRSKPE-------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV--------EYAGVHETQD 171 (262)
T ss_pred CEEEEcchhhCCHH-------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc--------cccceecccH
Confidence 69999999999999 9999999997632 22355555532 1111234589
Q ss_pred hhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc---C--Cc----cHHHHHHHHHHHHHHHHHhCCC
Q psy2778 306 DLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG---T--RS----TLRYVVQLLTPAALTAKTNGRT 376 (409)
Q Consensus 306 ~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s---~--~g----~~R~al~ll~~~~~~a~~~~~~ 376 (409)
++++||..+.+..++.++..+|++.+. .++++.++.|+++. . .. ++|.++.+.+.+... ..+.
T Consensus 172 aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~---~~~~ 243 (262)
T TIGR02640 172 ALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ---DIPV 243 (262)
T ss_pred HHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc---CCCC
Confidence 999999999999999999999998653 46788888886663 0 11 588888888877665 4577
Q ss_pred CccHHHHHHHHH
Q psy2778 377 AISKQDILEVST 388 (409)
Q Consensus 377 ~I~~~~v~~~~~ 388 (409)
.+++++++.++.
T Consensus 244 ~~~~~~~~~~~~ 255 (262)
T TIGR02640 244 DVDDEDFVDLCI 255 (262)
T ss_pred CCCcHHHHHHHH
Confidence 899999988764
No 138
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.9e-13 Score=138.96 Aligned_cols=87 Identities=18% Similarity=0.082 Sum_probs=76.1
Q ss_pred CCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCc
Q psy2778 302 GIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378 (409)
Q Consensus 302 ~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I 378 (409)
.+...|+||+ +++.+++++.+....||+.+++..++.+++++++||++.. .+|+|....+|.....++...+ ..|
T Consensus 426 ~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~-~rnvR~LegaL~rL~a~a~~~~-~~i 503 (617)
T PRK14086 426 TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRI-SRNIRELEGALIRVTAFASLNR-QPV 503 (617)
T ss_pred hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhhC-CCC
Confidence 5667899998 5799999999999999999999999999999999999998 8899999999998887776644 458
Q ss_pred cHHHHHHHHHhc
Q psy2778 379 SKQDILEVSTLF 390 (409)
Q Consensus 379 ~~~~v~~~~~~~ 390 (409)
+.+.+++++.-+
T Consensus 504 tl~la~~vL~~~ 515 (617)
T PRK14086 504 DLGLTEIVLRDL 515 (617)
T ss_pred CHHHHHHHHHHh
Confidence 888888887644
No 139
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.53 E-value=2.6e-13 Score=131.31 Aligned_cols=129 Identities=22% Similarity=0.294 Sum_probs=100.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-------------CceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
|++|+||++.++.+ .+++|...|+... .++++++|... .-..+|+++++
T Consensus 130 GiL~lDEInrl~~~-------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP-----------~e~~l~~aLld 191 (334)
T PRK13407 130 GYLYIDEVNLLEDH-------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP-----------EEGELRPQLLD 191 (334)
T ss_pred CeEEecChHhCCHH-------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCc-----------ccCCCCHHHHh
Confidence 89999999999999 9999999998642 35566666321 01248999999
Q ss_pred hh-heeecCCCCH-HHHHHHHHHHH-----------------------------hhcCCCCCHHHHHHHHHhc---CCcc
Q psy2778 310 RL-LIIRTTPYNQ-KDMEAIIKLRA-----------------------------NTEGHVLDDEALVTLSEIG---TRST 355 (409)
Q Consensus 310 r~-~~i~~~~~~~-~e~~~il~~~~-----------------------------~~~~~~i~~~~l~~I~~~s---~~g~ 355 (409)
|+ +.+.+.+... ++..+++.... .-.++.++++.++||++++ +..+
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s 271 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG 271 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC
Confidence 99 4677776655 66566665421 1136889999999998884 2348
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 356 LRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 356 ~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+|..+.++..|..+|..+|+..|+++||+.+...
T Consensus 272 ~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 272 LRGELTLLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred chHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 9999999999999999999999999999887754
No 140
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.53 E-value=4.1e-14 Score=137.58 Aligned_cols=95 Identities=25% Similarity=0.268 Sum_probs=76.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+.+|||++.++.+ +.++|+|++|.+.. -.+++.||. +..+.+.++|||..++|+|.+.
T Consensus 111 kviiidead~mt~~-------A~nallk~lEep~~~~~~il~~n~-------------~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 111 KVVIIDEADKLTED-------AANALLKTLEEPPKNTRFILITND-------------PSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred eEEEeCcHHHHhHH-------HHHHHHHHhccCCCCeEEEEEcCC-------------hhhccchhhhcceeeecCCchH
Confidence 58999999999999 99999999999866 556666652 4566667999999999999433
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT 369 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~ 369 (409)
. +.++..+ ++++..++..+ .||+|.|++.++.....
T Consensus 171 ~------~~i~~~e-----~~~l~~i~~~~-~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 171 L------EAIAWLE-----DQGLEEIAAVA-EGDARKAINPLQALAAL 206 (325)
T ss_pred H------HHHHHhh-----ccchhHHHHHH-HHHHHcCCCHHHHHHHh
Confidence 2 2233333 78899999999 99999999999987754
No 141
>KOG0990|consensus
Probab=99.53 E-value=3.8e-14 Score=131.96 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=90.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+..+.||++....+ ++++|+|.+|.+.. ..|++-. ++++.+.+.+++||..++|.|++.
T Consensus 133 KlvILDEADaMT~~-------AQnALRRviek~t~n~rF~ii~-------------n~~~ki~pa~qsRctrfrf~pl~~ 192 (360)
T KOG0990|consen 133 KLVILDEADAMTRD-------AQNALRRVIEKYTANTRFATIS-------------NPPQKIHPAQQSRCTRFRFAPLTM 192 (360)
T ss_pred eEEEecchhHhhHH-------HHHHHHHHHHHhccceEEEEec-------------cChhhcCchhhcccccCCCCCCCh
Confidence 45677888888888 99999998887644 4555443 346777788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT 369 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~ 369 (409)
..+.+.+..+++.+..++++++...+++++ .||+|.|++.|+.....
T Consensus 193 ~~~~~r~shi~e~e~~~~~~~~~~a~~r~s-~gDmr~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 193 AQQTERQSHIRESEQKETNPEGYSALGRLS-VGDMRVALNYLQSILKK 239 (360)
T ss_pred hhhhhHHHHHHhcchhhcCHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999977543
No 142
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=3.1e-13 Score=131.37 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=82.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|.+||+++.++.+ +.+.|+|+||+|.. .+||+.|+. ++.+++.++|||+.+.|.+++.
T Consensus 110 kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~t~fiL~t~~-------------~~~lLpTIrSRCq~~~~~~~~~ 169 (334)
T PRK07993 110 KVVWLPDAALLTDA-------AANALLKTLEEPPENTWFFLACRE-------------PARLLATLRSRCRLHYLAPPPE 169 (334)
T ss_pred eEEEEcchHhhCHH-------HHHHHHHHhcCCCCCeEEEEEECC-------------hhhChHHHHhccccccCCCCCH
Confidence 69999999999999 99999999999977 556666642 6788999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.|.. ...++++.+..+++++ +|++..|+.+++
T Consensus 170 ~~~~~~L~~-----~~~~~~~~a~~~~~la-~G~~~~Al~l~~ 206 (334)
T PRK07993 170 QYALTWLSR-----EVTMSQDALLAALRLS-AGAPGAALALLQ 206 (334)
T ss_pred HHHHHHHHH-----ccCCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 999888762 2346777788889999 999999998875
No 143
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.6e-13 Score=133.17 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=94.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhh--eeecCCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--IIRTTPY 319 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~--~i~~~~~ 319 (409)
-++.+||++.|-.. ++ +..-.|.+.-+...+. .+++.+|.- .....+.+-+.|++- .|.|+||
T Consensus 125 ~IvvLDEid~L~~~---~~-~~LY~L~r~~~~~~~~v~vi~i~n~~----------~~~~~ld~rv~s~l~~~~I~F~pY 190 (366)
T COG1474 125 VIVILDEVDALVDK---DG-EVLYSLLRAPGENKVKVSIIAVSNDD----------KFLDYLDPRVKSSLGPSEIVFPPY 190 (366)
T ss_pred EEEEEcchhhhccc---cc-hHHHHHHhhccccceeEEEEEEeccH----------HHHHHhhhhhhhccCcceeeeCCC
Confidence 48889999877654 11 2344444544444333 344444421 112333444566653 4779999
Q ss_pred CHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 320 NQKDMEAIIKLRANT--EGHVLDDEALVTLSEI--GTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 320 ~~~e~~~il~~~~~~--~~~~i~~~~l~~I~~~--s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
+.+|+.+|++.+++. ..-.++++++++++.. ..+||+|+|+.+|+.|...|+.+++..|+.++|.++.
T Consensus 191 ~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~ 262 (366)
T COG1474 191 TAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQ 262 (366)
T ss_pred CHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 999999999999884 3567999999999855 3477999999999999999999999999999999883
No 144
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=1.5e-13 Score=142.78 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=63.9
Q ss_pred Cchhhhh--hhheeecCCCCHHHHHHHHHHHHhhcCCC------C-CHHHHHHHHHhcCCccHHHHHHHHHHHHHH----
Q psy2778 303 IPLDLLD--RLLIIRTTPYNQKDMEAIIKLRANTEGHV------L-DDEALVTLSEIGTRSTLRYVVQLLTPAALT---- 369 (409)
Q Consensus 303 ~~~~l~~--r~~~i~~~~~~~~e~~~il~~~~~~~~~~------i-~~~~l~~I~~~s~~g~~R~al~ll~~~~~~---- 369 (409)
+.+++++ |+.+|.|.|++..++.+.|+.++++++.. + ++++++.|+..+ .||+|.||+.|+.++..
T Consensus 256 L~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s-~GDiRsAIn~LQf~~~~~g~~ 334 (637)
T TIGR00602 256 MNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGC-SGDIRSAINSLQFSSSKSGSL 334 (637)
T ss_pred cCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhC-CChHHHHHHHHHHHHhcCCcc
Confidence 4478988 66779999999999999999988876432 2 468999999988 99999999999988532
Q ss_pred HHHhCCCCccHHHHHHH
Q psy2778 370 AKTNGRTAISKQDILEV 386 (409)
Q Consensus 370 a~~~~~~~I~~~~v~~~ 386 (409)
|...+...++..+|.++
T Consensus 335 a~~~~~~~vs~~hv~~a 351 (637)
T TIGR00602 335 PIKKRMSTKSDAHASKS 351 (637)
T ss_pred ccccccccccHHHhhhc
Confidence 33334456666666554
No 145
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=7.7e-13 Score=127.50 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=78.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++||+++.++.+ +.++|+|+||+|.. .++|+.|+. ++.+++.++|||+.++|.|++.
T Consensus 109 KV~iI~~a~~m~~~-------AaNaLLKtLEEPp~~~~fiL~t~~-------------~~~llpTI~SRC~~~~~~~~~~ 168 (325)
T PRK06871 109 KVVYIQGAERLTEA-------AANALLKTLEEPRPNTYFLLQADL-------------SAALLPTIYSRCQTWLIHPPEE 168 (325)
T ss_pred eEEEEechhhhCHH-------HHHHHHHHhcCCCCCeEEEEEECC-------------hHhCchHHHhhceEEeCCCCCH
Confidence 69999999999999 99999999999977 445555532 5788899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.|.... ..++..+...+.++ +|++-.|+.+++
T Consensus 169 ~~~~~~L~~~~-----~~~~~~~~~~~~l~-~g~p~~A~~~~~ 205 (325)
T PRK06871 169 QQALDWLQAQS-----SAEISEILTALRIN-YGRPLLALTFLE 205 (325)
T ss_pred HHHHHHHHHHh-----ccChHHHHHHHHHc-CCCHHHHHHHhh
Confidence 99999888543 23444566777888 888988888764
No 146
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.50 E-value=1.2e-13 Score=135.25 Aligned_cols=147 Identities=17% Similarity=0.194 Sum_probs=94.8
Q ss_pred cCCcccccccccccccccC----ch-hhhHHHHHHHhcccCC--ceEEEecCcceeeecc-cccCCCCCCCchhhhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETFM----PH-LETFTYLHRALESAIA--PIVIFATNRGRCLVRG-TDDIISPHGIPLDLLDRL- 311 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~----~~-~~~~~~L~~~~e~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~r~- 311 (409)
..|+.||||++-+-...-. .+ .-.+..|++.+|...- +...+.|.....+-.| . ....|..+.++|..|+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF-~~~kp~DlIPEl~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAF-HVSKPSDLIPELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCc-CCCChhhccHHHhCccc
Confidence 3489999999877643110 11 2247889999997421 1122222222222111 2 2334667899999999
Q ss_pred heeecCCCCHHHHHHHHHH----H-------HhhcC--CCCCHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHH
Q psy2778 312 LIIRTTPYNQKDMEAIIKL----R-------ANTEG--HVLDDEALVTLSEIGT-------RSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~----~-------~~~~~--~~i~~~~l~~I~~~s~-------~g~~R~al~ll~~~~~~a~ 371 (409)
.++.+++++.+++.+||.. . .+.+| +.+++++++.||+.|. +.++|+--.++|....-..
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 5678999999999999952 1 12234 5899999999999973 5679999999998775443
Q ss_pred Hh-----C-CCCccHHHHHHHHH
Q psy2778 372 TN-----G-RTAISKQDILEVST 388 (409)
Q Consensus 372 ~~-----~-~~~I~~~~v~~~~~ 388 (409)
-+ + .-.|+.+.|...++
T Consensus 408 Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 408 FEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred ccCCCCCCCEEEECHHHHHHHHH
Confidence 21 1 13577887766554
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=8.9e-13 Score=141.10 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCchhhhhhhheeecCCCCHHHHHHHHHHHHh-----h-----cCCCCCHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Q psy2778 301 HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRAN-----T-----EGHVLDDEALVTLSEIG-TRSTLRYVVQLLTPAALT 369 (409)
Q Consensus 301 ~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~-----~-----~~~~i~~~~l~~I~~~s-~~g~~R~al~ll~~~~~~ 369 (409)
..+|+.|++||.+|.+.+|+.+|+.+|++.... + ..+.++++++++|++.. ..-++|.--..++..+..
T Consensus 475 ~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~ 554 (784)
T PRK10787 475 MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRK 554 (784)
T ss_pred CCCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHH
Confidence 369999999999999999999999999987653 1 24689999999998642 111344444444433322
Q ss_pred HH----HhC---CCCccHHHHHHHHH
Q psy2778 370 AK----TNG---RTAISKQDILEVST 388 (409)
Q Consensus 370 a~----~~~---~~~I~~~~v~~~~~ 388 (409)
.. ..+ ...|+.+++.+.++
T Consensus 555 ~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 555 AVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHhcCCCceeeecHHHHHHHhC
Confidence 21 122 13688888888776
No 148
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=4.7e-13 Score=131.52 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=83.2
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
+.|++|||+|.++.+ +.++|+|++|.+.. +++|+.|+. +..+++.++|||..++|.+++
T Consensus 142 ~kVviIDead~m~~~-------aanaLLK~LEepp~~~~~IL~t~~-------------~~~llpti~SRc~~i~l~~l~ 201 (365)
T PRK07471 142 WRVVIVDTADEMNAN-------AANALLKVLEEPPARSLFLLVSHA-------------PARLLPTIRSRCRKLRLRPLA 201 (365)
T ss_pred CEEEEEechHhcCHH-------HHHHHHHHHhcCCCCeEEEEEECC-------------chhchHHhhccceEEECCCCC
Confidence 469999999999999 99999999999854 677777753 345678899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 365 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~ 365 (409)
.+++.+.|... ....+++.+..++++| +|+++.|+.+++.
T Consensus 202 ~~~i~~~L~~~----~~~~~~~~~~~l~~~s-~Gsp~~Al~ll~~ 241 (365)
T PRK07471 202 PEDVIDALAAA----GPDLPDDPRAALAALA-EGSVGRALRLAGG 241 (365)
T ss_pred HHHHHHHHHHh----cccCCHHHHHHHHHHc-CCCHHHHHHHhcc
Confidence 99999998854 2445566668899999 9999999999863
No 149
>KOG1969|consensus
Probab=99.49 E-value=9.6e-13 Score=133.91 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=71.5
Q ss_pred CceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccH
Q psy2778 277 APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTL 356 (409)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~ 356 (409)
.|+|+++.| -|.|. .++|+.-|.++.|.|.+..-+.+.|+.+|..+|+.++..+|..+++++ .+|+
T Consensus 439 RPIICICNd----------LYaPa---LR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~-~~DI 504 (877)
T KOG1969|consen 439 RPIICICND----------LYAPA---LRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELT-QNDI 504 (877)
T ss_pred CCEEEEecC----------ccchh---hhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHh-cchH
Confidence 488888865 23433 566888899999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2778 357 RYVVQLLTPAALTAKT 372 (409)
Q Consensus 357 R~al~ll~~~~~~a~~ 372 (409)
|..||.|+..+..++.
T Consensus 505 RsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 505 RSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999988766543
No 150
>KOG2004|consensus
Probab=99.48 E-value=5.5e-13 Score=135.28 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=60.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC----chhhh---hhhhhhH-HHHHHHHHHHhhhhcccceE
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG----SEVFS---SEIKKTE-VLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~----~~l~~---~~~~~~e-~l~~~f~~a~~~~~~~~~ii 76 (409)
|...++-++|+||||+|||+++++||+.+|.++..+.+.| +++.+ .|+|... ++.+.+++.. .+..++
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~----t~NPli 509 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK----TENPLI 509 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhC----CCCceE
Confidence 4556778999999999999999999999998444444433 33333 6888877 8888888774 467799
Q ss_pred Eecccccccc
Q psy2778 77 YEGEVTELTP 86 (409)
Q Consensus 77 ~iDEid~i~~ 86 (409)
+|||||.+..
T Consensus 510 LiDEvDKlG~ 519 (906)
T KOG2004|consen 510 LIDEVDKLGS 519 (906)
T ss_pred EeehhhhhCC
Confidence 9999999963
No 151
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=1.1e-12 Score=130.02 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh-hhhhhh-H-HHHHHHHHHH-hhhhcccceEEecccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS-SEIKKT-E-VLMENFRRAI-GLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~-~~~~~~-e-~l~~~f~~a~-~~~~~~~~ii~iDEid~i 84 (409)
+.++||+||||||||++|+++|+.++. +|..++++.+.. .|+|.. + .+...++.+. .....++++||+||+|.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~--pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl 193 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNV--PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKI 193 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCC--CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchh
Confidence 479999999999999999999999985 999999887653 577764 3 4555555432 123356889999999999
Q ss_pred ccccc
Q psy2778 85 TPVET 89 (409)
Q Consensus 85 ~~~~~ 89 (409)
.+++.
T Consensus 194 ~~~~~ 198 (413)
T TIGR00382 194 SRKSE 198 (413)
T ss_pred chhhc
Confidence 88643
No 152
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.47 E-value=1.5e-12 Score=126.35 Aligned_cols=131 Identities=25% Similarity=0.304 Sum_probs=102.3
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhccc-------------CCceEEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESA-------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
.|++|+||++.++.. .+++|...|+.. ..++++++|... .-..+|++++
T Consensus 145 ~GiL~lDEInrL~~~-------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np-----------~eg~l~~~Ll 206 (350)
T CHL00081 145 RGILYVDEVNLLDDH-------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNP-----------EEGELRPQLL 206 (350)
T ss_pred CCEEEecChHhCCHH-------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCc-----------ccCCCCHHHH
Confidence 389999999999999 999999998762 235566665321 1234899999
Q ss_pred hhh-heeecCCCC-HHHHHHHHHHHH-----------------------------hhcCCCCCHHHHHHHHHhcCC---c
Q psy2778 309 DRL-LIIRTTPYN-QKDMEAIIKLRA-----------------------------NTEGHVLDDEALVTLSEIGTR---S 354 (409)
Q Consensus 309 ~r~-~~i~~~~~~-~~e~~~il~~~~-----------------------------~~~~~~i~~~~l~~I~~~s~~---g 354 (409)
+|+ +.+.+.+++ .++-.+|++... .-..+.++++.++||++++.. -
T Consensus 207 dRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~ 286 (350)
T CHL00081 207 DRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVD 286 (350)
T ss_pred HHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCC
Confidence 999 567788776 366666666431 113688999999999888522 3
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 355 TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 355 ~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
++|..+.+++.|..+|..+|+..|+++||+.+..+-
T Consensus 287 s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 287 GLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 799999999999999999999999999999988653
No 153
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.47 E-value=1.2e-12 Score=126.99 Aligned_cols=130 Identities=25% Similarity=0.292 Sum_probs=100.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-------------CceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
|++|+||++.++.. .+++|...|++.. .++++++|... .-..+|+++++
T Consensus 133 GvL~lDEi~~L~~~-------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np-----------~eg~l~~~Lld 194 (337)
T TIGR02030 133 GILYIDEVNLLEDH-------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP-----------EEGELRPQLLD 194 (337)
T ss_pred CEEEecChHhCCHH-------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc-----------ccCCCCHHHHh
Confidence 89999999999999 9999999997642 34566665321 12358999999
Q ss_pred hhh-eeecCCCCH-HHHHHHHHHHHh-----------------------------hcCCCCCHHHHHHHHHhcC--Cc-c
Q psy2778 310 RLL-IIRTTPYNQ-KDMEAIIKLRAN-----------------------------TEGHVLDDEALVTLSEIGT--RS-T 355 (409)
Q Consensus 310 r~~-~i~~~~~~~-~e~~~il~~~~~-----------------------------~~~~~i~~~~l~~I~~~s~--~g-~ 355 (409)
|+. .+.+.++.. ++..++++.... -.++.+++++++||++++. +. +
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s 274 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDG 274 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCC
Confidence 995 577777665 666666665211 1367899999999988742 22 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 356 LRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 356 ~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
+|..+.+++.|..+|..+|+..|+++||+.+..+-
T Consensus 275 ~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 275 LRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999888653
No 154
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.47 E-value=1.9e-12 Score=129.20 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=95.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-----------CceEEEecCcceeeecccccCCCCCCCchhhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-----------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 311 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 311 (409)
.++|+||++.+++. .+++|+..|++.. -|+++.|||.-. ......+++++|+
T Consensus 109 ~lLfLDEI~rasp~-------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP----------E~g~~leAL~DRF 171 (498)
T PRK13531 109 EIVFLDEIWKAGPA-------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP----------EADSSLEALYDRM 171 (498)
T ss_pred cEEeecccccCCHH-------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc----------ccCCchHHhHhhE
Confidence 37888998888888 8888888885432 256777775210 0123345899999
Q ss_pred h-eeecCCCC-HHHHHHHHHHHH-----------------------hhcCCCCCHHHHHHHHHhcC-----C----ccHH
Q psy2778 312 L-IIRTTPYN-QKDMEAIIKLRA-----------------------NTEGHVLDDEALVTLSEIGT-----R----STLR 357 (409)
Q Consensus 312 ~-~i~~~~~~-~~e~~~il~~~~-----------------------~~~~~~i~~~~l~~I~~~s~-----~----g~~R 357 (409)
+ .+.++|++ .++..++|.... ....+.+++++++||.++.. + -|+|
T Consensus 172 liri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR 251 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDR 251 (498)
T ss_pred EEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcH
Confidence 5 47788886 466677775321 11378899999999988842 1 3899
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 358 YVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 358 ~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+.+.++..+...|-.+||..|+++||.-+..
T Consensus 252 ~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~~ 282 (498)
T PRK13531 252 RWKKAIRLLQASAFFSGRDAIAPIDLILLKD 282 (498)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHhHH
Confidence 9999999999999999999999999994433
No 155
>KOG0745|consensus
Probab=99.46 E-value=1.7e-12 Score=125.07 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=65.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh-hhhhh-hH-HHHHHHHHHH-hhhhcccceEEeccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS-SEIKK-TE-VLMENFRRAI-GLRIKESKEVYEGEVTE 83 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~-~~~~~-~e-~l~~~f~~a~-~~~~~~~~ii~iDEid~ 83 (409)
...+|||.||+|+|||.||+.||+-++ +||..-++..+.. .|+|+ .| .|.+++..|. ++...+..|+|+||+|.
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ld--VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDK 302 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLD--VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDK 302 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhC--CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhh
Confidence 346999999999999999999999998 6999999999864 78997 45 6788888775 34445678999999999
Q ss_pred cccc
Q psy2778 84 LTPV 87 (409)
Q Consensus 84 i~~~ 87 (409)
|..+
T Consensus 303 i~~~ 306 (564)
T KOG0745|consen 303 ITKK 306 (564)
T ss_pred hccc
Confidence 9854
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.45 E-value=1.4e-12 Score=141.85 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=62.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccceE
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~ii 76 (409)
...+++|+||||||||++++++|+.+.. ..+++.++.+.+. .+|.|+.+ ++.++|+.+.. ...++||
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~--~~~~~IL 270 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTK--SEGQIIL 270 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh--cCCCeEE
Confidence 3468999999999999999999998721 2477888777765 46788877 78888887752 2368999
Q ss_pred Eecccccccccc
Q psy2778 77 YEGEVTELTPVE 88 (409)
Q Consensus 77 ~iDEid~i~~~~ 88 (409)
||||+|.+.+.+
T Consensus 271 fIDEih~l~~~g 282 (852)
T TIGR03346 271 FIDELHTLVGAG 282 (852)
T ss_pred EeccHHHhhcCC
Confidence 999999997643
No 157
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.45 E-value=3.4e-12 Score=117.19 Aligned_cols=70 Identities=26% Similarity=0.342 Sum_probs=56.4
Q ss_pred CCCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 301 HGIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 301 ~~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
..+.+++.||+ +++.+.+++.++..++++.+++..+++++++++++|++.. .+|+|.-..+|.....+++
T Consensus 145 ~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~-~~~~r~L~~~l~~l~~~~~ 217 (219)
T PF00308_consen 145 SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRF-RRDVRELEGALNRLDAYAQ 217 (219)
T ss_dssp TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHT-TSSHHHHHHHHHHHHHHHH
T ss_pred cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhh
Confidence 35778899998 4799999999999999999999999999999999999999 8899999999998887765
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=4.9e-12 Score=122.64 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=80.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++||+++.++.+ +.+.|+|++|++.. .++|+.|+. ++.+++.++|||.+++|.+++.
T Consensus 95 kv~iI~~ad~m~~~-------a~naLLK~LEepp~~t~~il~~~~-------------~~~ll~TI~SRc~~~~~~~~~~ 154 (313)
T PRK05564 95 KVIIIYNSEKMTEQ-------AQNAFLKTIEEPPKGVFIILLCEN-------------LEQILDTIKSRCQIYKLNRLSK 154 (313)
T ss_pred eEEEEechhhcCHH-------HHHHHHHHhcCCCCCeEEEEEeCC-------------hHhCcHHHHhhceeeeCCCcCH
Confidence 69999999999999 99999999999876 456665531 4688889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++...+..... .++++.++.++..+ +|++..|..++.
T Consensus 155 ~~~~~~l~~~~~----~~~~~~~~~l~~~~-~g~~~~a~~~~~ 192 (313)
T PRK05564 155 EEIEKFISYKYN----DIKEEEKKSAIAFS-DGIPGKVEKFIE 192 (313)
T ss_pred HHHHHHHHHHhc----CCCHHHHHHHHHHc-CCCHHHHHHHhc
Confidence 999888875443 47788899999999 888888876654
No 159
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=1.1e-12 Score=127.83 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=77.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|||++.++.+ +.++|+|.||+|.. .++|+.|+ .+..+++.++|||.+++|.+++.
T Consensus 112 kvviI~~a~~~~~~-------a~NaLLK~LEEPp~~~~~Il~t~-------------~~~~ll~TIrSRc~~i~~~~~~~ 171 (329)
T PRK08058 112 KVYIIEHADKMTAS-------AANSLLKFLEEPSGGTTAILLTE-------------NKHQILPTILSRCQVVEFRPLPP 171 (329)
T ss_pred eEEEeehHhhhCHH-------HHHHHHHHhcCCCCCceEEEEeC-------------ChHhCcHHHHhhceeeeCCCCCH
Confidence 69999999999999 99999999999877 44666654 25678889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.++ ++| ++++...+++..+ |+++.|+.+++
T Consensus 172 ~~~~~~L~----~~g--i~~~~~~~l~~~~--g~~~~A~~l~~ 206 (329)
T PRK08058 172 ESLIQRLQ----EEG--ISESLATLLAGLT--NSVEEALALSE 206 (329)
T ss_pred HHHHHHHH----HcC--CChHHHHHHHHHc--CCHHHHHHHhc
Confidence 99988776 345 5566666776664 68999998875
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=2e-12 Score=140.14 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=63.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~ 77 (409)
..+++|+||||||||++|+++|+.+.. ..+++.++.+.+. .+|.|+.+ ++.++|..... ...++|||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~--~~~~~ILf 276 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK--QEGNVILF 276 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHH--cCCCeEEE
Confidence 468999999999999999999999821 2478888777765 46788887 78889987642 34689999
Q ss_pred eccccccccccc
Q psy2778 78 EGEVTELTPVET 89 (409)
Q Consensus 78 iDEid~i~~~~~ 89 (409)
|||+|.+.+.+.
T Consensus 277 IDEih~l~~~~~ 288 (857)
T PRK10865 277 IDELHTMVGAGK 288 (857)
T ss_pred EecHHHhccCCC
Confidence 999999987643
No 161
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=8.1e-13 Score=128.22 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=75.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++||+++.++.+ +.+.|+|++|+|.. .+||+.|+. +..+++.++|||..++|.+++.
T Consensus 134 kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~t~fiL~t~~-------------~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 134 RVVVLYPAEALNVA-------AANALLKTLEEPPPGTVFLLVSAR-------------IDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred eEEEEechhhcCHH-------HHHHHHHHhcCCCcCcEEEEEECC-------------hhhCcHHHHhcCEEEEecCCCH
Confidence 69999999999999 99999999999976 556666643 5788889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.|... ++ ++ .+.+..++ +|++..|+.+++
T Consensus 194 ~~~~~~L~~~----~~--~~--~~~~l~~~-~Gsp~~Al~~~~ 227 (342)
T PRK06964 194 EAAAAWLAAQ----GV--AD--ADALLAEA-GGAPLAALALAS 227 (342)
T ss_pred HHHHHHHHHc----CC--Ch--HHHHHHHc-CCCHHHHHHHHC
Confidence 9999988743 32 22 23356778 899998887763
No 162
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=4.3e-12 Score=122.14 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=78.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++||+++.++.+ +.++|+|+||+|... +||+.++. +..+++.++|||..++|.+++.
T Consensus 115 kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~~~fiL~~~~-------------~~~lLpTIrSRCq~i~~~~~~~ 174 (319)
T PRK08769 115 QVVIVDPADAINRA-------ACNALLKTLEEPSPGRYLWLISAQ-------------PARLPATIRSRCQRLEFKLPPA 174 (319)
T ss_pred EEEEeccHhhhCHH-------HHHHHHHHhhCCCCCCeEEEEECC-------------hhhCchHHHhhheEeeCCCcCH
Confidence 69999999999999 999999999999774 46666642 5678889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.|.. .+ ++++....++.++ +|++-.|+.+++
T Consensus 175 ~~~~~~L~~----~~--~~~~~a~~~~~l~-~G~p~~A~~~~~ 210 (319)
T PRK08769 175 HEALAWLLA----QG--VSERAAQEALDAA-RGHPGLAAQWLR 210 (319)
T ss_pred HHHHHHHHH----cC--CChHHHHHHHHHc-CCCHHHHHHHhc
Confidence 999888863 23 4455566778899 999999988764
No 163
>KOG0736|consensus
Probab=99.39 E-value=7.5e-11 Score=120.88 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccccccccc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELTPVE 88 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~~~~ 88 (409)
..+||+||||||||+++++.|+++|. +++++++.++.+...+.+| ++...|.+|+. ..|+|||+-..|-+...+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~--h~~evdc~el~~~s~~~~etkl~~~f~~a~~---~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGL--HLLEVDCYELVAESASHTETKLQAIFSRARR---CSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCC--ceEeccHHHHhhcccchhHHHHHHHHHHHhh---cCceEEEEeccceeeecC
Confidence 57999999999999999999999996 9999999999999999888 89999999974 489999999999997544
Q ss_pred cCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccceeecc
Q psy2778 89 TENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAEEYVP 168 (409)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~~~i~ 168 (409)
.+ +....+...+..+...+ ........+++|++++ ....+.+.....-+| .+.
T Consensus 507 dg----ged~rl~~~i~~~ls~e----------------~~~~~~~~~ivv~t~~-s~~~lp~~i~~~f~~------ei~ 559 (953)
T KOG0736|consen 507 DG----GEDARLLKVIRHLLSNE----------------DFKFSCPPVIVVATTS-SIEDLPADIQSLFLH------EIE 559 (953)
T ss_pred CC----chhHHHHHHHHHHHhcc----------------cccCCCCceEEEEecc-ccccCCHHHHHhhhh------hcc
Confidence 43 22222222211111100 0122345666666665 555555444333333 445
Q ss_pred CCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHH
Q psy2778 169 LPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMV 206 (409)
Q Consensus 169 ~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~ 206 (409)
+|.++...|.+++|.+..+ .+..++.++.| -+|+.+++
T Consensus 560 ~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~ 606 (953)
T KOG0736|consen 560 VPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALV 606 (953)
T ss_pred CCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHh
Confidence 5666777789998876543 24467777777 66666654
No 164
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.38 E-value=1.7e-11 Score=127.93 Aligned_cols=133 Identities=25% Similarity=0.290 Sum_probs=98.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-------------CceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
|++|+||++.++.+ .+++|...|++.. .++.+++|..+. + .--.+|+++++
T Consensus 86 GvL~lDEi~rl~~~-------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~--------e-~~g~L~~~Lld 149 (589)
T TIGR02031 86 GVLYVDMANLLDDG-------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA--------E-GGGGLPDHLLD 149 (589)
T ss_pred CcEeccchhhCCHH-------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc--------c-ccCCCCHHHHH
Confidence 79999999999999 9999999998653 344555554321 0 11268999999
Q ss_pred hhhe-eecCC-CCHHHHHHHHHHH-----------------------HhhcCCCCCHHHHHHHHHhcC---CccHHHHHH
Q psy2778 310 RLLI-IRTTP-YNQKDMEAIIKLR-----------------------ANTEGHVLDDEALVTLSEIGT---RSTLRYVVQ 361 (409)
Q Consensus 310 r~~~-i~~~~-~~~~e~~~il~~~-----------------------~~~~~~~i~~~~l~~I~~~s~---~g~~R~al~ 361 (409)
|+.+ +.+.+ ...++-.++++.. .....+.++++++++|++++. -.++|..+.
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~ 229 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLF 229 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHH
Confidence 9954 45444 3444445555432 112378899999999988742 235999999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 362 LLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 362 ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
+++.|..+|..+|+..|+++||+.+..+.+
T Consensus 230 ~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 230 AVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999987654
No 165
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=2.1e-12 Score=123.56 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=34.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
+...++++||.||||||||++++.+|+.+++ +++.++++..
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~--~~~rV~~~~~ 100 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNW--PCVRVNLDSH 100 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 3445789999999999999999999999997 7887776543
No 166
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.38 E-value=5e-11 Score=112.85 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=94.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc--CCc-eEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA--IAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTP 318 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~--~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~ 318 (409)
.+++|||+|.++.+ +...|....+.. ..+ +.++.+... .... ....+ -...+.+|+ ..+.+++
T Consensus 125 ~vliiDe~~~l~~~-------~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~---~l~~~--~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLTPE-------LLEELRMLSNFQTDNAKLLQIFLVGQP-EFRE---TLQSP--QLQQLRQRIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCCHH-------HHHHHHHHhCcccCCCCeEEEEEcCCH-HHHH---HHcCc--hhHHHHhheeeeeeCCC
Confidence 58999999999887 666665443321 122 222222211 0000 00111 123577775 5788999
Q ss_pred CCHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 319 YNQKDMEAIIKLRANTEG----HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~~~----~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
++.+|+.+.+..+....+ ..+++++++.|.+.| +|.+|....++..+...|..++...|+.++|+.+..-
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s-~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFS-RGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc-CCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999999998877543 479999999999999 9999999999998888877778889999999988753
No 167
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1e-11 Score=119.38 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=77.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|++++.++.+ +.++|+|++|+|.. .++|+.|+. +..+++.++|||..+.|.+++.
T Consensus 110 kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~t~fiL~t~~-------------~~~lLpTI~SRCq~~~~~~~~~ 169 (319)
T PRK06090 110 RLFVIEPADAMNES-------ASNALLKTLEEPAPNCLFLLVTHN-------------QKRLLPTIVSRCQQWVVTPPST 169 (319)
T ss_pred eEEEecchhhhCHH-------HHHHHHHHhcCCCCCeEEEEEECC-------------hhhChHHHHhcceeEeCCCCCH
Confidence 69999999999999 99999999999977 556666642 5678888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.|.. .+++ ....+++++ +|++..|+.+++
T Consensus 170 ~~~~~~L~~----~~~~----~~~~~l~l~-~G~p~~A~~~~~ 203 (319)
T PRK06090 170 AQAMQWLKG----QGIT----VPAYALKLN-MGSPLKTLAMMK 203 (319)
T ss_pred HHHHHHHHH----cCCc----hHHHHHHHc-CCCHHHHHHHhC
Confidence 999988863 3443 134667888 899999988875
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.36 E-value=6.5e-11 Score=116.31 Aligned_cols=88 Identities=24% Similarity=0.245 Sum_probs=77.1
Q ss_pred Cchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 303 IPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 303 ~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+-+.|+||+ +++.+.|++.+....+|..+++..++.++++++.+|++.. ..|+|.....|+....+|...++ .||
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL~~l~~~a~~~~~-~iT 302 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGALNRLDAFALFTKR-AIT 302 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhcCc-cCc
Confidence 346788888 5899999999999999999999999999999999999998 88999999999999988876554 799
Q ss_pred HHHHHHHHHhccC
Q psy2778 380 KQDILEVSTLFLD 392 (409)
Q Consensus 380 ~~~v~~~~~~~~~ 392 (409)
.+.|++++.-+..
T Consensus 303 i~~v~e~L~~~~~ 315 (408)
T COG0593 303 IDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHHHhhc
Confidence 9999888864443
No 169
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.33 E-value=4.8e-11 Score=125.83 Aligned_cols=131 Identities=25% Similarity=0.347 Sum_probs=96.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-------------CceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
|++|+||++.++.+ .++.|+..|+... ..+.+++|... ....++.+|++
T Consensus 128 GiL~lDEi~~l~~~-------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np-----------~eg~l~~~L~d 189 (633)
T TIGR02442 128 GILYIDEVNLLDDH-------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP-----------EEGDLRPQLLD 189 (633)
T ss_pred CeEEeChhhhCCHH-------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC-----------CCCCCCHHHHh
Confidence 89999999999999 9999999998652 12344443211 12357899999
Q ss_pred hh-heeecCCCC-HHHHHHHHHHH-----------------------------HhhcCCCCCHHHHHHHHHhcCC---cc
Q psy2778 310 RL-LIIRTTPYN-QKDMEAIIKLR-----------------------------ANTEGHVLDDEALVTLSEIGTR---ST 355 (409)
Q Consensus 310 r~-~~i~~~~~~-~~e~~~il~~~-----------------------------~~~~~~~i~~~~l~~I~~~s~~---g~ 355 (409)
|+ +.+.+.+.. .++..++++.+ .....+.++++++++|++++.. .+
T Consensus 190 R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s 269 (633)
T TIGR02442 190 RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDG 269 (633)
T ss_pred hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99 456666544 34444454421 1112588999999999887522 26
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 356 LRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 356 ~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
+|..+.+++.|..+|..+|+..|+.+||+++..+-+
T Consensus 270 ~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 270 HRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred ccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999987654
No 170
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.30 E-value=7.3e-11 Score=115.24 Aligned_cols=138 Identities=22% Similarity=0.272 Sum_probs=100.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc------------CCceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
+++++||++..+++ .++.|+..|+.. ..|.++++|..+. .+...+.+|.++++|
T Consensus 114 ~ill~DEInra~p~-------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~-------e~~g~~~l~eA~ldR 179 (329)
T COG0714 114 VILLLDEINRAPPE-------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG-------EYEGTYPLPEALLDR 179 (329)
T ss_pred eEEEEeccccCCHH-------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc-------ccCCCcCCCHHHHhh
Confidence 48999999999999 999999988871 2466777774321 344557889999999
Q ss_pred h-heeecCCCCHHH-HHHHHHHHHh-------------------------hcCCCCCHHHHHHHHHhcC---Cc------
Q psy2778 311 L-LIIRTTPYNQKD-MEAIIKLRAN-------------------------TEGHVLDDEALVTLSEIGT---RS------ 354 (409)
Q Consensus 311 ~-~~i~~~~~~~~e-~~~il~~~~~-------------------------~~~~~i~~~~l~~I~~~s~---~g------ 354 (409)
| +.+.+.++..++ ...++..... ..+.++++++..++..+.. ..
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALG 259 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhcc
Confidence 9 788888884443 3333332111 1168899999999766531 11
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChH
Q psy2778 355 -TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAK 394 (409)
Q Consensus 355 -~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~ 394 (409)
++|....++..+...|...++..+.+++++..........
T Consensus 260 ~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~~ 300 (329)
T COG0714 260 ASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAHR 300 (329)
T ss_pred CCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhhh
Confidence 5899999999999999989999999999988876544433
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=4.3e-11 Score=129.57 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=54.4
Q ss_pred CCchhhhhhhheeecCCCCHHHHHHHHHHHHhh-------c-C--CCCCHHHHHHHHHhcCCc---cHHHHHHHHHHHHH
Q psy2778 302 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT-------E-G--HVLDDEALVTLSEIGTRS---TLRYVVQLLTPAAL 368 (409)
Q Consensus 302 ~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~-------~-~--~~i~~~~l~~I~~~s~~g---~~R~al~ll~~~~~ 368 (409)
.++++|++|+.+|.|.|++.+++.+|+...... . + +.++++++++|++.+ .+ ++|-..++++.-..
T Consensus 750 ~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g-~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 750 VFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARC-TEVESGARNIDAILNQTLL 828 (852)
T ss_pred hccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHc-CCCCCChHHHHHHHHHHHH
Confidence 468999999999999999999999999865432 1 3 589999999999998 44 78888888876543
No 172
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=4.8e-10 Score=103.86 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=83.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCC--
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY-- 319 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~-- 319 (409)
+|++|++++.++.+ +.++|+|++|+|.. .++++.|+. +..+++.++|||+.+.+.++
T Consensus 90 KV~II~~ae~m~~~-------AaNaLLK~LEEPp~~t~fiLit~~-------------~~~lLpTI~SRCq~~~~~~~~~ 149 (261)
T PRK05818 90 KIYIIYGIEKLNKQ-------SANSLLKLIEEPPKNTYGIFTTRN-------------ENNILNTILSRCVQYVVLSKEK 149 (261)
T ss_pred EEEEeccHhhhCHH-------HHHHHHHhhcCCCCCeEEEEEECC-------------hHhCchHhhhheeeeecCChhh
Confidence 69999999999999 99999999999977 556666642 57888999999999999888
Q ss_pred --------CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 320 --------NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 320 --------~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
++.++.+.+... ..+++ .++..+ +|+...|+.+++.. . .+ .-....|.++..+|.
T Consensus 150 ~~~~~~~~~~~~i~~~L~~~-----~~~d~----~i~~~a-~g~~~~a~~l~~~l---~-n~---~~~~~~v~kl~~~~~ 212 (261)
T PRK05818 150 KVPFKVESNDRYFQYILLSF-----YSVDE----QLQAYN-NGSFSKLKNIIETL---I-NK---KNKLIQIHKAWILFK 212 (261)
T ss_pred hcccccccChHHHHHHHHHc-----cCccH----HHHHHc-CCCHHHHHHHHHHH---H-cc---cccHHHHHHHHHHHH
Confidence 444444443311 22433 666778 99999999999843 1 11 123445667777776
Q ss_pred ChH
Q psy2778 392 DAK 394 (409)
Q Consensus 392 ~~~ 394 (409)
+..
T Consensus 213 ~~~ 215 (261)
T PRK05818 213 TFS 215 (261)
T ss_pred hhh
Confidence 654
No 173
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=4.4e-10 Score=106.23 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=62.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++|++++.++.+ +.++|+|++|+|.. .++++.|+. ++.+++.++|||+.++|.+++
T Consensus 97 kv~ii~~ad~mt~~-------AaNaLLK~LEEPp~~~~fiL~~~~-------------~~~ll~TI~SRcq~~~~~~~~- 155 (290)
T PRK05917 97 KIYIIHEADRMTLD-------AISAFLKVLEDPPQHGVIILTSAK-------------PQRLPPTIRSRSLSIHIPMEE- 155 (290)
T ss_pred eEEEEechhhcCHH-------HHHHHHHHhhcCCCCeEEEEEeCC-------------hhhCcHHHHhcceEEEccchh-
Confidence 69999999999999 99999999999977 455555542 578889999999999998862
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTL 356 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~ 356 (409)
...++++.+..++..+ +|+.
T Consensus 156 --------------~~~i~~~~~~~l~~~~-~g~~ 175 (290)
T PRK05917 156 --------------KTLVSKEDIAYLIGYA-QGKE 175 (290)
T ss_pred --------------ccCCCHHHHHHHHHHh-CCCh
Confidence 1246777777777777 6666
No 174
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.20 E-value=2.1e-10 Score=123.12 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=73.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-----------CC-ceEEEecCcceeeec----ccccC--------C
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-----------IA-PIVIFATNRGRCLVR----GTDDI--------I 298 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-----------~~-~~~i~~~~~~~~~~~----~~~~~--------~ 298 (409)
+|+++||++.++++ .++.|++.+++. ++ .+||+++|.+...+. +.... .
T Consensus 555 ~VvllDEieka~~~-------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~ 627 (731)
T TIGR02639 555 CVLLLDEIEKAHPD-------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKA 627 (731)
T ss_pred eEEEEechhhcCHH-------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHH
Confidence 45666666666555 566666655543 22 456677766532110 00000 0
Q ss_pred CCCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhh-------c--CCCCCHHHHHHHHHhc--CCccHHHHHHHHHHH
Q psy2778 299 SPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------E--GHVLDDEALVTLSEIG--TRSTLRYVVQLLTPA 366 (409)
Q Consensus 299 ~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~-------~--~~~i~~~~l~~I~~~s--~~g~~R~al~ll~~~ 366 (409)
....++++|++|+ .++.|+|++.+++.+|+....++ . .+.++++++++|++.+ ...++|---..++.-
T Consensus 628 ~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 628 IKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 1134688999999 58999999999999999976542 1 3789999999999864 223455554444433
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.20 E-value=3.2e-11 Score=105.50 Aligned_cols=58 Identities=31% Similarity=0.387 Sum_probs=44.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
.|++||+++.++.+ ++++|+|+||++.. ..+|+.|+. +..+++.++|||+.+++.|++
T Consensus 104 KviiI~~ad~l~~~-------a~NaLLK~LEepp~~~~fiL~t~~-------------~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 104 KVIIIDEADKLTEE-------AQNALLKTLEEPPENTYFILITNN-------------PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEEETGGGS-HH-------HHHHHHHHHHSTTTTEEEEEEES--------------GGGS-HHHHTTSEEEEE----
T ss_pred eEEEeehHhhhhHH-------HHHHHHHHhcCCCCCEEEEEEECC-------------hHHChHHHHhhceEEecCCCC
Confidence 69999999999999 99999999999976 556666642 467888999999999998874
No 176
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.17 E-value=1e-09 Score=113.79 Aligned_cols=133 Identities=26% Similarity=0.294 Sum_probs=105.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-------------CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
||||+||++.++.. .++.|+..||.. ..++++++|+.+. ..-..+|+.++|
T Consensus 95 GvL~lDe~n~~~~~-------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~---------~~~~~L~~~lLD 158 (584)
T PRK13406 95 GVLVLAMAERLEPG-------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA---------EEDERAPAALAD 158 (584)
T ss_pred CEEEecCcccCCHH-------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh---------hcccCCCHHhHh
Confidence 89999999999999 999999999975 2456777764321 112568999999
Q ss_pred hh-heeecCCCCHHHHH-------HHHHHHHhhcCCCCCHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHhCCCCc
Q psy2778 310 RL-LIIRTTPYNQKDME-------AIIKLRANTEGHVLDDEALVTLSEIGTRS---TLRYVVQLLTPAALTAKTNGRTAI 378 (409)
Q Consensus 310 r~-~~i~~~~~~~~e~~-------~il~~~~~~~~~~i~~~~l~~I~~~s~~g---~~R~al~ll~~~~~~a~~~~~~~I 378 (409)
|+ +.+.+.+++..+.. +|.+.+..-.++.++++.+++|++++... |+|..+.+++.|..+|..+|+..|
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V 238 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAV 238 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCC
Confidence 99 67888887766543 45554444458999999999998875332 679999999999999999999999
Q ss_pred cHHHHHHHHHhcc
Q psy2778 379 SKQDILEVSTLFL 391 (409)
Q Consensus 379 ~~~~v~~~~~~~~ 391 (409)
+.+||.++..+-+
T Consensus 239 ~~~dv~~Aa~lvL 251 (584)
T PRK13406 239 EEEDLALAARLVL 251 (584)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987643
No 177
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.16 E-value=1.8e-09 Score=111.34 Aligned_cols=142 Identities=21% Similarity=0.191 Sum_probs=97.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-------------Cce-EEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-------------API-VIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-------------~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
|+++|||++.++.+ .+.+|+..||... .++ ++.++|........+-+...-..+|+.++
T Consensus 302 Gil~iDEi~~l~~~-------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lL 374 (509)
T smart00350 302 GVCCIDEFDKMDDS-------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPIL 374 (509)
T ss_pred CEEEEechhhCCHH-------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHh
Confidence 89999999999999 9999999998642 223 44445432110000001111237899999
Q ss_pred hhh-heeec-CCCCHHHHHHHHHHHHh------------------------------h-cCCCCCHHHHHHHHHhc----
Q psy2778 309 DRL-LIIRT-TPYNQKDMEAIIKLRAN------------------------------T-EGHVLDDEALVTLSEIG---- 351 (409)
Q Consensus 309 ~r~-~~i~~-~~~~~~e~~~il~~~~~------------------------------~-~~~~i~~~~l~~I~~~s---- 351 (409)
||+ +++.+ .+++.+.-.++++.+.. . ..-.+++++.++|.++.
T Consensus 375 sRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 375 SRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred CceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 999 65544 44666555566654311 1 11267999999886541
Q ss_pred -----------CCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 352 -----------TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 352 -----------~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
..-++|..+.+++.|..+|..+++..|+++||+.+..+|.
T Consensus 455 ~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 455 KEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred ccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 0127999999999999999999999999999999998864
No 178
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.16 E-value=5.4e-10 Score=114.27 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=55.3
Q ss_pred CCchhhhhhh--heeecCCCCHHHHHHHHHHHHhhc-----C---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q psy2778 302 GIPLDLLDRL--LIIRTTPYNQKDMEAIIKLRANTE-----G---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAAL 368 (409)
Q Consensus 302 ~~~~~l~~r~--~~i~~~~~~~~e~~~il~~~~~~~-----~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~ 368 (409)
-+|+++++.. ..|.|.|.+..-|...|+.++.++ + .+-..+.++.|+..| .||+|-||+.|+-.+.
T Consensus 194 L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s-~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 194 LFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS-NGDIRSAINNLQFWCL 269 (519)
T ss_pred ccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc-CchHHHHHHHHHHHhc
Confidence 5688888754 579999999999999999999887 2 233355799999999 9999999999998776
No 179
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=2.2e-09 Score=104.14 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=58.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+|++||+++.+|.+ +.+.|.|++|.+.. ..+|+.|+. +..+++.++|||+.++|.+++.
T Consensus 115 kV~iiEp~~~Ld~~-------a~naLLk~LEep~~~~~~Ilvth~-------------~~~ll~ti~SRc~~~~~~~~~~ 174 (325)
T PRK08699 115 RVILIHPAESMNLQ-------AANSLLKVLEEPPPQVVFLLVSHA-------------ADKVLPTIKSRCRKMVLPAPSH 174 (325)
T ss_pred eEEEEechhhCCHH-------HHHHHHHHHHhCcCCCEEEEEeCC-------------hHhChHHHHHHhhhhcCCCCCH
Confidence 69999999999999 99999999999854 446666642 4577888999999999999999
Q ss_pred HHHHHHHHH
Q psy2778 322 KDMEAIIKL 330 (409)
Q Consensus 322 ~e~~~il~~ 330 (409)
+++.+.|..
T Consensus 175 ~~~~~~L~~ 183 (325)
T PRK08699 175 EEALAYLRE 183 (325)
T ss_pred HHHHHHHHh
Confidence 999888863
No 180
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.08 E-value=4.1e-09 Score=96.39 Aligned_cols=59 Identities=31% Similarity=0.318 Sum_probs=48.0
Q ss_pred hhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCH-----HHHHHHHHhcCCccHHHHHHHHHHH
Q psy2778 307 LLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDD-----EALVTLSEIGTRSTLRYVVQLLTPA 366 (409)
Q Consensus 307 l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~-----~~l~~I~~~s~~g~~R~al~ll~~~ 366 (409)
|-+|+ +.+.|.+++.++-.+|++..+++.|+++++ +|+..-.... +.|+|-|-+.+...
T Consensus 181 LsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg-~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 181 LSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG-GRSGRTARQFIDDL 245 (249)
T ss_pred HHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 78898 889999999999999999999999999995 4444445555 66899888776543
No 181
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.07 E-value=1.2e-09 Score=114.22 Aligned_cols=130 Identities=23% Similarity=0.377 Sum_probs=92.6
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccC----------------------CceEEEecCcceeeecccccCCC
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAI----------------------APIVIFATNRGRCLVRGTDDIIS 299 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~----------------------~~~~i~~~~~~~~~~~~~~~~~~ 299 (409)
.|+||+||++.|+.+ .+.+|.+.|++.. ...+|.++|. ..
T Consensus 218 gGtL~Ldei~~L~~~-------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~-----------~~ 279 (608)
T TIGR00764 218 KGVLYIDEIKTMPLE-------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNL-----------DD 279 (608)
T ss_pred CCEEEEEChHhCCHH-------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCH-----------HH
Confidence 389999999999998 9999999987642 1125555542 12
Q ss_pred CCCCchhhhhhhh---e-eecC---CCCHHHHHHHHHH---HHhhcC--CCCCHHHHHHHHHhc----CCc-----cHHH
Q psy2778 300 PHGIPLDLLDRLL---I-IRTT---PYNQKDMEAIIKL---RANTEG--HVLDDEALVTLSEIG----TRS-----TLRY 358 (409)
Q Consensus 300 ~~~~~~~l~~r~~---~-i~~~---~~~~~e~~~il~~---~~~~~~--~~i~~~~l~~I~~~s----~~g-----~~R~ 358 (409)
...+.++|++|+- + +.+. |.+.+...++++. .++..| -+++++++..|.+.+ +.. +.|.
T Consensus 280 l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~ 359 (608)
T TIGR00764 280 LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRE 359 (608)
T ss_pred HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 3567889999986 2 3333 3455555555554 344442 369999999997543 222 4799
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 359 VVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 359 al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
.-++++.|...|..+++..|+.+||+++...
T Consensus 360 L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 360 LGGLVRAAGDIAKSSGKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 9999999988888778889999999998764
No 182
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.07 E-value=2e-10 Score=94.59 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=36.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-----------CCceEEEecCcceeeecccccCCCCCCCchhhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-----------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 311 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 311 (409)
+++++||+++.++. .+++|+.+|++. ..|.+|+||...... .-.+.+|..++||+
T Consensus 64 ~ill~DEiNrappk-------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~-------~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 64 NILLADEINRAPPK-------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQ-------EGTYPLPEAQLDRF 129 (131)
T ss_dssp SEEEEETGGGS-HH-------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT---------S------HHHHTTS
T ss_pred ceeeecccccCCHH-------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcccc-------CceecCCHHHhccc
Confidence 58999999999999 999999999874 235788888765322 23478999999998
Q ss_pred h
Q psy2778 312 L 312 (409)
Q Consensus 312 ~ 312 (409)
+
T Consensus 130 ~ 130 (131)
T PF07726_consen 130 M 130 (131)
T ss_dssp S
T ss_pred c
Confidence 6
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.4e-09 Score=111.27 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=78.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC-C-------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG-N-------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~-~-------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~ 77 (409)
+.+-+|.|+||+|||+++..+|...- . +..++.++-+.+. .+|-|+-| ++..+++.... ..+.|+|
T Consensus 191 KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~---~~~vILF 267 (786)
T COG0542 191 KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEK---SKNVILF 267 (786)
T ss_pred CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhc---CCCeEEE
Confidence 45778999999999999999999872 1 2356666666664 37888888 89999988863 3488999
Q ss_pred ecccccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEccc
Q psy2778 78 EGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANS 143 (409)
Q Consensus 78 iDEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~ 143 (409)
|||++.|.+....... ++ | ..++++..+..|..-+|+|||
T Consensus 268 IDEiHtiVGAG~~~G~-a~--------------D-----------AaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 268 IDEIHTIVGAGATEGG-AM--------------D-----------AANLLKPALARGELRCIGATT 307 (786)
T ss_pred EechhhhcCCCccccc-cc--------------c-----------hhhhhHHHHhcCCeEEEEecc
Confidence 9999999876543210 10 0 234566677889999999998
No 184
>KOG1514|consensus
Probab=99.05 E-value=2.7e-09 Score=108.95 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=64.5
Q ss_pred heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHhCC-------CCccHHH
Q psy2778 312 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI--GTRSTLRYVVQLLTPAALTAKTNGR-------TAISKQD 382 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~--s~~g~~R~al~ll~~~~~~a~~~~~-------~~I~~~~ 382 (409)
..+.|.||+..++++|+..+.+.. -.|+.++++.+++. +..||+|+|+.++++|...|..+.. ..|++-|
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILH 647 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHH
Confidence 358899999999999999887665 45788999998876 4689999999999999998865433 4578888
Q ss_pred HHHHHHhccC
Q psy2778 383 ILEVSTLFLD 392 (409)
Q Consensus 383 v~~~~~~~~~ 392 (409)
|..+..=+.+
T Consensus 648 v~~Ai~em~~ 657 (767)
T KOG1514|consen 648 VMEAINEMLA 657 (767)
T ss_pred HHHHHHHHhh
Confidence 8888765444
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.7e-09 Score=113.49 Aligned_cols=75 Identities=25% Similarity=0.308 Sum_probs=56.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcC-CCccEEEecCchhhh------------hhhhhhH--HHHHHHHHHHhhhh
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELG-NKVPFCPMVGSEVFS------------SEIKKTE--VLMENFRRAIGLRI 70 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~~l~~------------~~~~~~e--~l~~~f~~a~~~~~ 70 (409)
..|-.++||.||+|+|||-+|++||..+. .+..++.++.|+..- .|+|-.+ .|++..+ .
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVR------r 591 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVR------R 591 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhh------c
Confidence 45557899999999999999999999994 345889999877654 4566444 4455443 3
Q ss_pred cccceEEecccccccc
Q psy2778 71 KESKEVYEGEVTELTP 86 (409)
Q Consensus 71 ~~~~ii~iDEid~i~~ 86 (409)
+..|||++|||+..-|
T Consensus 592 ~PySViLlDEIEKAHp 607 (786)
T COG0542 592 KPYSVILLDEIEKAHP 607 (786)
T ss_pred CCCeEEEechhhhcCH
Confidence 4578999999998744
No 186
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.03 E-value=3.6e-09 Score=110.07 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=94.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.|+.+ .+.+|.+.+++.. ...+|.+|+.... .......+..+|+.|
T Consensus 292 GtL~ldei~~L~~~-------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~------~~~~~~~f~~~L~~r 358 (534)
T TIGR01817 292 GTLFLDEIGEISPA-------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLE------EAVAKGEFRADLYYR 358 (534)
T ss_pred CeEEEechhhCCHH-------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHH------HHHHcCCCCHHHHHH
Confidence 89999999999999 9999999998642 2357777765421 111234567889999
Q ss_pred hh--eeecCCCC--HHHHHHHHHHHHhh----c--CCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccH
Q psy2778 311 LL--IIRTTPYN--QKDMEAIIKLRANT----E--GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISK 380 (409)
Q Consensus 311 ~~--~i~~~~~~--~~e~~~il~~~~~~----~--~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~ 380 (409)
+- .|.++|+. .+++..++.....+ . .+.++++++..+.++.+-|+.|.--+.++.+...+. ...|+.
T Consensus 359 l~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~---~~~I~~ 435 (534)
T TIGR01817 359 INVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSR---SGTITR 435 (534)
T ss_pred hcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccH
Confidence 74 57788887 47777776654332 2 267999999999999999999999999999987652 346777
Q ss_pred HHHH
Q psy2778 381 QDIL 384 (409)
Q Consensus 381 ~~v~ 384 (409)
+++.
T Consensus 436 ~~l~ 439 (534)
T TIGR01817 436 SDFS 439 (534)
T ss_pred HHCc
Confidence 7764
No 187
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=8.8e-09 Score=97.75 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=73.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++||+++.++.+ +.+.|+|++|+|.. .++|+.|+. +..+++.++|||..++|.+ +.
T Consensus 106 kV~II~~ad~m~~~-------AaNaLLKtLEEPp~~t~~iL~t~~-------------~~~lLpTI~SRcq~i~f~~-~~ 164 (290)
T PRK07276 106 QVFIIKDADKMHVN-------AANSLLKVIEEPQSEIYIFLLTND-------------ENKVLPTIKSRTQIFHFPK-NE 164 (290)
T ss_pred EEEEeehhhhcCHH-------HHHHHHHHhcCCCCCeEEEEEECC-------------hhhCchHHHHcceeeeCCC-cH
Confidence 69999999999999 99999999999987 556666642 5678888999999999977 77
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+++. ++|+ +++....++..+ |++..|+.+++
T Consensus 165 ~~~~~~L~----~~g~--~~~~a~~la~~~--~s~~~A~~l~~ 199 (290)
T PRK07276 165 AYLIQLLE----QKGL--LKTQAELLAKLA--QSTSEAEKLAQ 199 (290)
T ss_pred HHHHHHHH----HcCC--ChHHHHHHHHHC--CCHHHHHHHhC
Confidence 77777665 4454 344455666665 47999988873
No 188
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.01 E-value=5.6e-09 Score=106.60 Aligned_cols=139 Identities=19% Similarity=0.166 Sum_probs=94.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC--------------CceEEEecCcceeeeccc----ccCC------
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGT----DDII------ 298 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~--------------~~~~i~~~~~~~~~~~~~----~~~~------ 298 (409)
|++|+||++.++++ .+.+|+..||... ...+|.++|...+=.-+. -+..
T Consensus 297 GvLfLDEi~e~~~~-------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~ 369 (499)
T TIGR00368 297 GVLFLDELPEFKRS-------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISR 369 (499)
T ss_pred CeEecCChhhCCHH-------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHH
Confidence 89999999999999 9999999998753 345777777532100000 0000
Q ss_pred CCCCCchhhhhhh-heeecCCCCHHHHH------------HHHH-HHHhh------c-----C-----------CCCCHH
Q psy2778 299 SPHGIPLDLLDRL-LIIRTTPYNQKDME------------AIIK-LRANT------E-----G-----------HVLDDE 342 (409)
Q Consensus 299 ~~~~~~~~l~~r~-~~i~~~~~~~~e~~------------~il~-~~~~~------~-----~-----------~~i~~~ 342 (409)
....++..|+||+ +.+.+++++..++. +.+. .+..+ . | +.++++
T Consensus 370 y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~ 449 (499)
T TIGR00368 370 YWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAI 449 (499)
T ss_pred HhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHH
Confidence 0125788899999 56788887666552 2221 11111 1 1 234666
Q ss_pred HHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 343 ALVTLSEIGTR--STLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 343 ~l~~I~~~s~~--g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+.+.+.+.... =|.|.-..+|+.|...|..+|+..|+.+||.++++
T Consensus 450 ~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 450 DANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 66666544322 28999999999999999999999999999999886
No 189
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=6.1e-09 Score=99.58 Aligned_cols=94 Identities=11% Similarity=0.129 Sum_probs=76.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|++++.++.+ +.+.|+|.+|+|.. .++|+.|+. +..+++.++|||.++.|.|++.
T Consensus 92 KvvII~~~e~m~~~-------a~NaLLK~LEEPp~~t~~il~~~~-------------~~kll~TI~SRc~~~~f~~l~~ 151 (299)
T PRK07132 92 KILIIKNIEKTSNS-------LLNALLKTIEEPPKDTYFLLTTKN-------------INKVLPTIVSRCQVFNVKEPDQ 151 (299)
T ss_pred eEEEEecccccCHH-------HHHHHHHHhhCCCCCeEEEEEeCC-------------hHhChHHHHhCeEEEECCCCCH
Confidence 69999999999999 99999999999977 456665532 3677888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+++.+.|... + ++++....++..+ + ++..|+.++.
T Consensus 152 ~~l~~~l~~~----~--~~~~~a~~~a~~~-~-~~~~a~~~~~ 186 (299)
T PRK07132 152 QKILAKLLSK----N--KEKEYNWFYAYIF-S-NFEQAEKYIN 186 (299)
T ss_pred HHHHHHHHHc----C--CChhHHHHHHHHc-C-CHHHHHHHHh
Confidence 9999887732 3 6777788888887 5 4888887753
No 190
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.5e-09 Score=96.00 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=91.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhhe--------
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI-------- 313 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~-------- 313 (409)
+..+|+++|+++.+ ++++|+|++|+|.. .++++.|.. ++.+++.++|||++
T Consensus 56 ~k~iI~~a~~l~~~-------A~NaLLK~LEEPp~~~~fiL~t~~-------------~~~llpTI~SRc~~~~~~~~~~ 115 (206)
T PRK08485 56 EKIIVIAAPSYGIE-------AQNALLKILEEPPKNICFIIVAKS-------------KNLLLPTIRSRLIIEKRKQKKP 115 (206)
T ss_pred cEEEEEchHhhCHH-------HHHHHHHHhcCCCCCeEEEEEeCC-------------hHhCchHHHhhheecccccccc
Confidence 34578899999999 99999999999977 456666632 67889999999986
Q ss_pred -----eecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Q psy2778 314 -----IRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT 369 (409)
Q Consensus 314 -----i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~ 369 (409)
+.+++++.+++.+.++. .+++++...+++++.|+.++ .|++|+|+.+.+.+..+
T Consensus 116 ~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la-~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 116 VKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLL-KECVKYKIPLNEEELEY 174 (206)
T ss_pred ccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHH-HHHHHHHcCccHHHHHH
Confidence 77899999999999997 67888999999999999999 99999999998887654
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.99 E-value=4.5e-09 Score=102.37 Aligned_cols=115 Identities=24% Similarity=0.256 Sum_probs=87.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.|+.+ .+..|.+.+++.. ...+|.+|+.... .....-.+..+|+.|
T Consensus 95 GtL~Ldei~~L~~~-------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~------~~~~~g~fr~dL~~r 161 (329)
T TIGR02974 95 GTLFLDELATASLL-------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLP------ALAAEGRFRADLLDR 161 (329)
T ss_pred CEEEeCChHhCCHH-------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHH------HHhhcCchHHHHHHH
Confidence 89999999999999 9999999998753 2357777764321 111223456789999
Q ss_pred h--heeecCCCC--HHHHHHHHHHH----HhhcC----CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 311 L--LIIRTTPYN--QKDMEAIIKLR----ANTEG----HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 311 ~--~~i~~~~~~--~~e~~~il~~~----~~~~~----~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
+ ..|.++|+- .+|+..++..- +.+.+ ..++++++..+..+..-|+.|.--+.++++...+
T Consensus 162 l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 162 LAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 8 578899988 47777776643 33333 3689999999999999999999999999998765
No 192
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.99 E-value=1.5e-08 Score=98.66 Aligned_cols=130 Identities=27% Similarity=0.332 Sum_probs=98.1
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhccc--------------CCceEEEecCcceeeecccccCCCCCCCchhh
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESA--------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDL 307 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (409)
.||++|||++.|+.+ .++.|+..++.. ...++|.++|.. . -.+-+.|
T Consensus 145 RGIlYvDEvnlL~d~-------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE------e------GeLrpqL 205 (423)
T COG1239 145 RGILYVDEVNLLDDH-------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE------E------GELRPQL 205 (423)
T ss_pred CCEEEEeccccccHH-------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc------c------cccchhh
Confidence 389999999999999 999999988872 234567777653 1 2345669
Q ss_pred hhhh-heeecCCC-CHHHHHHHHHHHHhh-----------------------------cCCCCCHHHHHHHHHhcCC---
Q psy2778 308 LDRL-LIIRTTPY-NQKDMEAIIKLRANT-----------------------------EGHVLDDEALVTLSEIGTR--- 353 (409)
Q Consensus 308 ~~r~-~~i~~~~~-~~~e~~~il~~~~~~-----------------------------~~~~i~~~~l~~I~~~s~~--- 353 (409)
++|+ +.+.+.+. +.++-.+|++++..- ..+.++++...+|+..+.+
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v 285 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAV 285 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhcc
Confidence 9997 67777764 445555666543321 1678899999988777422
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 354 STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 354 g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
.+.|..+-+.+.+..+|...|+..|+.+|++.+..+-
T Consensus 286 ~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 286 DGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred CCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 2488999999999999999999999999999998764
No 193
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.99 E-value=7.7e-09 Score=112.82 Aligned_cols=119 Identities=21% Similarity=0.337 Sum_probs=88.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-----------CC-ceEEEecCcceeeeccc---cc---------CC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-----------IA-PIVIFATNRGRCLVRGT---DD---------II 298 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-----------~~-~~~i~~~~~~~~~~~~~---~~---------~~ 298 (409)
.|+++||++.++++ .++.|++.+++. ++ .+||+++|.+...+... .+ ..
T Consensus 669 ~vlllDeieka~~~-------v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~ 741 (852)
T TIGR03346 669 SVVLFDEVEKAHPD-------VFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEV 741 (852)
T ss_pred cEEEEeccccCCHH-------HHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHH
Confidence 48999999999999 999999999875 23 56888888754321100 00 00
Q ss_pred CCCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHh-------hc--CCCCCHHHHHHHHHhcC--CccHHHHHHHHHHH
Q psy2778 299 SPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRAN-------TE--GHVLDDEALVTLSEIGT--RSTLRYVVQLLTPA 366 (409)
Q Consensus 299 ~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~-------~~--~~~i~~~~l~~I~~~s~--~g~~R~al~ll~~~ 366 (409)
....++++|++|+ .++.|.|++.+++.+|+..... .. .+.++++++++|++.+. .+++|.--+.++..
T Consensus 742 ~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 742 LRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQRE 821 (852)
T ss_pred HHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHH
Confidence 1234678999999 6899999999999999986543 22 36899999999999864 57788877777766
Q ss_pred HH
Q psy2778 367 AL 368 (409)
Q Consensus 367 ~~ 368 (409)
..
T Consensus 822 i~ 823 (852)
T TIGR03346 822 IE 823 (852)
T ss_pred HH
Confidence 54
No 194
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.98 E-value=7.2e-09 Score=112.77 Aligned_cols=118 Identities=24% Similarity=0.419 Sum_probs=80.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-----------CC-ceEEEecCcceeeec---cccc---------CC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-----------IA-PIVIFATNRGRCLVR---GTDD---------II 298 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-----------~~-~~~i~~~~~~~~~~~---~~~~---------~~ 298 (409)
+++++||++.++++ .++.|++.+++. +. .+||+++|.+...+. +... ..
T Consensus 672 ~vLllDEieka~~~-------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~ 744 (857)
T PRK10865 672 SVILLDEVEKAHPD-------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGV 744 (857)
T ss_pred CeEEEeehhhCCHH-------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHH
Confidence 68899999988888 889998888764 22 357777776422110 0000 11
Q ss_pred CCCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhh-------cC--CCCCHHHHHHHHHhcCCc--cHHHHHHHHHHH
Q psy2778 299 SPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------EG--HVLDDEALVTLSEIGTRS--TLRYVVQLLTPA 366 (409)
Q Consensus 299 ~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~-------~~--~~i~~~~l~~I~~~s~~g--~~R~al~ll~~~ 366 (409)
....+.++|++|+ .++.|.|++.+++.+|++....+ .+ +.++++++++|++.+-.. ++|---+.++.-
T Consensus 745 ~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 745 VSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 2345688999999 89999999999999998865543 23 578999999999875322 455555555444
Q ss_pred H
Q psy2778 367 A 367 (409)
Q Consensus 367 ~ 367 (409)
.
T Consensus 825 i 825 (857)
T PRK10865 825 I 825 (857)
T ss_pred H
Confidence 3
No 195
>PHA02244 ATPase-like protein
Probab=98.95 E-value=6.7e-09 Score=100.73 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
+.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~--pfv~In~ 152 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDL--DFYFMNA 152 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC--CEEEEec
Confidence 468999999999999999999999986 8888874
No 196
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.91 E-value=1.8e-09 Score=95.20 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC--CCccEEEecCchhhhhhhhhhHHHHHHHHHHHh-hhhcccceEEecccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG--NKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIG-LRIKESKEVYEGEVTEL 84 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~--~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~-~~~~~~~ii~iDEid~i 84 (409)
|-.++||+||+|||||.+|+++|+.+. ...+++.++++++....-.+. .+.+.+-.+.+ ....+..|||+||||.+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~-~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVES-SVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSC-HCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHh-hhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 446899999999999999999999997 234899999988766111111 22222222211 12234469999999999
Q ss_pred ccc
Q psy2778 85 TPV 87 (409)
Q Consensus 85 ~~~ 87 (409)
.++
T Consensus 81 ~~~ 83 (171)
T PF07724_consen 81 HPS 83 (171)
T ss_dssp SHT
T ss_pred ccc
Confidence 875
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.91 E-value=4.1e-09 Score=102.15 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=64.7
Q ss_pred cCCcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 241 VPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
..|++.++|+...+.+ .++.|+..+++.. ..+||..+|...-... . ....+..|+
T Consensus 236 NrGi~~f~Ei~K~~~~-------~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~-~-----~~k~~eaf~ 302 (361)
T smart00763 236 NRGILEFVEMFKADIK-------FLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRF-K-----SNKKNEALL 302 (361)
T ss_pred cCceEEEeehhcCCHH-------HHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhh-h-----ccccchhhh
Confidence 3489999999999999 9999998887531 1235555554311000 0 013367799
Q ss_pred hhhheeecCCC-CHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHhc
Q psy2778 309 DRLLIIRTTPY-NQKDMEAIIKLRANTE---GHVLDDEALVTLSEIG 351 (409)
Q Consensus 309 ~r~~~i~~~~~-~~~e~~~il~~~~~~~---~~~i~~~~l~~I~~~s 351 (409)
+||..+.++++ +..+-.+|.+..+... +..+.+.+++.++..+
T Consensus 303 dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~a 349 (361)
T smart00763 303 DRIIKVKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALFS 349 (361)
T ss_pred hceEEEeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHHH
Confidence 99999999874 4456666666555533 5677788777776654
No 198
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.4e-08 Score=93.15 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=87.6
Q ss_pred CCcccccccccccccccC----ch-hhhHHHHHHHhccc-----CCce----EEEecCcceeeecccccCCCCCCCchhh
Q psy2778 242 PGVLFIDEVHMLDLETFM----PH-LETFTYLHRALESA-----IAPI----VIFATNRGRCLVRGTDDIISPHGIPLDL 307 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~----~~-~~~~~~L~~~~e~~-----~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (409)
.|+.||||++-.-..+-- ++ .-.+.-|+..+|.. .+|+ +.|-..+ .. ...-|..+.++|
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasG------AF-h~sKPSDLiPEL 323 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASG------AF-HVAKPSDLIPEL 323 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecC------ce-ecCChhhcChhh
Confidence 489999998855332100 00 11245566666642 2232 2222221 12 345577889999
Q ss_pred hhhh-heeecCCCCHHHHHHHHHH-----------HHhhc--CCCCCHHHHHHHHHhc-------CCccHHHHHHHHHHH
Q psy2778 308 LDRL-LIIRTTPYNQKDMEAIIKL-----------RANTE--GHVLDDEALVTLSEIG-------TRSTLRYVVQLLTPA 366 (409)
Q Consensus 308 ~~r~-~~i~~~~~~~~e~~~il~~-----------~~~~~--~~~i~~~~l~~I~~~s-------~~g~~R~al~ll~~~ 366 (409)
-.|+ +.+.+.++|.+++..||.. -.+.+ .+.+++++++.|++++ ++=++|+--..+|..
T Consensus 324 QGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 324 QGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred cCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 9999 5699999999999999872 11233 4689999999999986 233689988888876
Q ss_pred HH----HHHH-hC-CCCccHHHHHHHHH
Q psy2778 367 AL----TAKT-NG-RTAISKQDILEVST 388 (409)
Q Consensus 367 ~~----~a~~-~~-~~~I~~~~v~~~~~ 388 (409)
.. .|.. .| .-.|+.+-|.+-++
T Consensus 404 LediSFeA~d~~g~~v~Id~~yV~~~l~ 431 (444)
T COG1220 404 LEDISFEAPDMSGQKVTIDAEYVEEKLG 431 (444)
T ss_pred HHHhCccCCcCCCCeEEEcHHHHHHHHH
Confidence 53 2222 12 22577777766553
No 199
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.88 E-value=3.7e-08 Score=101.39 Aligned_cols=130 Identities=22% Similarity=0.192 Sum_probs=94.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.|+.+ .+..|.+.+++.. ...+|.+|+.... .......+..+|..|
T Consensus 309 GTLfLdeI~~Lp~~-------~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~------~~v~~g~fr~dL~~r 375 (526)
T TIGR02329 309 GTLFLDEIGEMPLP-------LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALT------TAVQQGRFRRDLFYR 375 (526)
T ss_pred ceEEecChHhCCHH-------HHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHH------HHhhhcchhHHHHHh
Confidence 89999999999999 9999999998642 1247777765432 112223455677777
Q ss_pred h--heeecCCCCH--HHHHHHHHHHH----hhcCCCCCHHHHHH-------HHHhcCCccHHHHHHHHHHHHHHHHHhCC
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKLRA----NTEGHVLDDEALVT-------LSEIGTRSTLRYVVQLLTPAALTAKTNGR 375 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~~~----~~~~~~i~~~~l~~-------I~~~s~~g~~R~al~ll~~~~~~a~~~~~ 375 (409)
+ +.+.++|+-+ +|+..++.... ...+++++++++.. +..+.+-|+.|.--++++++...+.....
T Consensus 376 L~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~ 455 (526)
T TIGR02329 376 LSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPA 455 (526)
T ss_pred cCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCC
Confidence 6 5788888876 56666655433 34467899999988 99999999999999999999876532223
Q ss_pred CCccHHHHHH
Q psy2778 376 TAISKQDILE 385 (409)
Q Consensus 376 ~~I~~~~v~~ 385 (409)
..|+.+++..
T Consensus 456 ~~I~~~~l~~ 465 (526)
T TIGR02329 456 GALTPDVLRA 465 (526)
T ss_pred CccCHHHhhh
Confidence 4688777643
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.87 E-value=6.7e-09 Score=86.87 Aligned_cols=76 Identities=29% Similarity=0.422 Sum_probs=53.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCc-cEEEecCchhhhhhhh--------------hhH-HHHHHHHHHHhhhhcc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKV-PFCPMVGSEVFSSEIK--------------KTE-VLMENFRRAIGLRIKE 72 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~-~~v~i~~~~l~~~~~~--------------~~e-~l~~~f~~a~~~~~~~ 72 (409)
+.+++|+||||||||++++.+|+.+.... .++.++++.....+.. ... .....+..+.. ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK---LK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh---cC
Confidence 57899999999999999999999998632 4777777654332111 111 34455555542 23
Q ss_pred cceEEeccccccccc
Q psy2778 73 SKEVYEGEVTELTPV 87 (409)
Q Consensus 73 ~~ii~iDEid~i~~~ 87 (409)
+.+|++||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 699999999998654
No 201
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.86 E-value=1.2e-07 Score=99.39 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=93.2
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccC----------------------CceEEEecCcceeeecccccCCC
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAI----------------------APIVIFATNRGRCLVRGTDDIIS 299 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~----------------------~~~~i~~~~~~~~~~~~~~~~~~ 299 (409)
.|+||+||++.|+++ .+.+|.+.|++.. ...+|.++|. ..
T Consensus 227 GGtL~LDei~~L~~~-------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~-----------~l 288 (637)
T PRK13765 227 KGVLFIDEINTLDLE-------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL-----------DA 288 (637)
T ss_pred CcEEEEeChHhCCHH-------HHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc-----------CH
Confidence 389999999999998 9999999997543 1135555543 23
Q ss_pred CCCCchhhhhhhh----eeecCC---CCHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhc----CCcc-----HHH
Q psy2778 300 PHGIPLDLLDRLL----IIRTTP---YNQKDMEAIIKLRANTE-----GHVLDDEALVTLSEIG----TRST-----LRY 358 (409)
Q Consensus 300 ~~~~~~~l~~r~~----~i~~~~---~~~~e~~~il~~~~~~~-----~~~i~~~~l~~I~~~s----~~g~-----~R~ 358 (409)
.+.+.++|++|+- .+.|.. -+.+.....+...++.. -.+++++++..|.+.+ +..+ .|.
T Consensus 289 l~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~ 368 (637)
T PRK13765 289 LENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRD 368 (637)
T ss_pred HHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHH
Confidence 4566889999983 345553 45666677776555432 2379999998887654 2322 778
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 359 VVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 359 al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
...+++.|...|..+++..|+.+||.++.
T Consensus 369 l~~l~r~a~~~a~~~~~~~i~~~~v~~a~ 397 (637)
T PRK13765 369 LGGLVRVAGDIARSEGAELTTAEHVLEAK 397 (637)
T ss_pred HHHHHHHHHHHHHhhccceecHHHHHHHH
Confidence 88899999989988888899999998776
No 202
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.86 E-value=6.5e-08 Score=98.53 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=90.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC--------------CceEEEecCcceeeecccccCCC---------
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIIS--------- 299 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~--------------~~~~i~~~~~~~~~~~~~~~~~~--------- 299 (409)
|++|+||++.++.. .+..|++.||+.. ...+|.++|...+ |. +..
T Consensus 296 GvLfLDEi~e~~~~-------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pc---G~--~~~~~c~c~~~~ 363 (506)
T PRK09862 296 GVLFLDELPEFERR-------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPT---GH--YQGNHNRCTPEQ 363 (506)
T ss_pred CEEecCCchhCCHH-------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccc---ee--cCCCCCCcCHHH
Confidence 89999999999998 9999999997653 1245666664321 11 110
Q ss_pred ----CCCCchhhhhhhh-eeecCCCCHHH-------------HH-HHHHHHHh------hcC-----------CCCCHHH
Q psy2778 300 ----PHGIPLDLLDRLL-IIRTTPYNQKD-------------ME-AIIKLRAN------TEG-----------HVLDDEA 343 (409)
Q Consensus 300 ----~~~~~~~l~~r~~-~i~~~~~~~~e-------------~~-~il~~~~~------~~~-----------~~i~~~~ 343 (409)
...++..++||+. .+.+.+++.++ +. .+++.+.. ..+ +.+++++
T Consensus 364 ~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~ 443 (506)
T PRK09862 364 TLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESED 443 (506)
T ss_pred HHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHH
Confidence 0247788999995 47777664332 22 11111111 001 3555665
Q ss_pred HHHHHHhc--CCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 344 LVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 344 l~~I~~~s--~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
...+.... .+-|+|....+|+.|...|..+|+..|+.+||.++..+
T Consensus 444 ~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 444 ARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 55443322 14489999999999999999999999999999999974
No 203
>KOG0741|consensus
Probab=98.85 E-value=2.7e-08 Score=98.65 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=79.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch-hhhh-hhhhhHHHHHHHHHHHhhhhcccceEEecccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE-VFSS-EIKKTEVLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~-l~~~-~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.+.+-.++||+||||+|||+||..+|...+ +||+.+-+++ +.+- +..+-..+.++|+.|.. ..-++|++|+++
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~--FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYk---S~lsiivvDdiE 608 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIALSSD--FPFVKIISPEDMIGLSESAKCAHIKKIFEDAYK---SPLSIIVVDDIE 608 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHhhcC--CCeEEEeChHHccCccHHHHHHHHHHHHHHhhc---CcceEEEEcchh
Confidence 344557899999999999999999998876 6999877654 3332 22222357899999963 245899999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKR 148 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~ 148 (409)
+|.---. -.+.++..+.|. +.-++++....|...+|.+||++..-
T Consensus 609 rLiD~vp--IGPRfSN~vlQa-------------------L~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 609 RLLDYVP--IGPRFSNLVLQA-------------------LLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred hhhcccc--cCchhhHHHHHH-------------------HHHHhccCCCCCceEEEEecccHHHH
Confidence 9842110 011122222222 33455677888999999999965543
No 204
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.85 E-value=1.5e-08 Score=107.60 Aligned_cols=127 Identities=21% Similarity=0.269 Sum_probs=92.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.++.+ .+..|.+.+++.. ...+|.+|+.... .......+..+|+.|
T Consensus 418 GtL~ldei~~l~~~-------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~------~~~~~~~f~~dL~~~ 484 (638)
T PRK11388 418 GTLFLEKVEYLSPE-------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLA------MLVEQNRFSRQLYYA 484 (638)
T ss_pred CEEEEcChhhCCHH-------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHH------HHHhcCCChHHHhhh
Confidence 89999999999999 9999999998653 2347777775431 111224556677777
Q ss_pred h--heeecCCCCH--HHHHHHHHHHHhh----c--CCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccH
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKLRANT----E--GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISK 380 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~~~~~----~--~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~ 380 (409)
+ ..|.++|+-+ +|+..++.....+ . .+.++++++..+.++..-|+.|.--++++.+...+. ...|+.
T Consensus 485 l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~---~~~i~~ 561 (638)
T PRK11388 485 LHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSD---NGRIRL 561 (638)
T ss_pred hceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCC---CCeecH
Confidence 6 4577888766 4666666654332 2 357899999999999999999999999999886642 245777
Q ss_pred HHHHH
Q psy2778 381 QDILE 385 (409)
Q Consensus 381 ~~v~~ 385 (409)
+++..
T Consensus 562 ~~lp~ 566 (638)
T PRK11388 562 SDLPE 566 (638)
T ss_pred HHCch
Confidence 77643
No 205
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.85 E-value=4.3e-08 Score=100.85 Aligned_cols=128 Identities=22% Similarity=0.191 Sum_probs=90.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.|+.+ .+..|.+.+++.. ...+|.+|+..... ....-.+..+++.|
T Consensus 324 GTLfLdeI~~Lp~~-------~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~------~v~~g~Fr~dL~yr 390 (538)
T PRK15424 324 GTLFLDEIGEMPLP-------LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEE------DVRQGRFRRDLFYR 390 (538)
T ss_pred CEEEEcChHhCCHH-------HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHH------HHhcccchHHHHHH
Confidence 89999999999999 9999999998742 12588888754321 11122345678888
Q ss_pred h--heeecCCCCH--HHHHHHHHHHHh----hcCCCCCHHHH-------HHHHHhcCCccHHHHHHHHHHHHHHHHHhCC
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKLRAN----TEGHVLDDEAL-------VTLSEIGTRSTLRYVVQLLTPAALTAKTNGR 375 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~~~~----~~~~~i~~~~l-------~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~ 375 (409)
+ +.|.++|+-+ +|+..++..-.+ ..+.+++++++ ..+..+.+-|+.|.--++++++..++.....
T Consensus 391 L~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~ 470 (538)
T PRK15424 391 LSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPT 470 (538)
T ss_pred hcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCc
Confidence 6 4677888765 567666664443 35777888776 6788888999999999999999887543222
Q ss_pred CCccHHHH
Q psy2778 376 TAISKQDI 383 (409)
Q Consensus 376 ~~I~~~~v 383 (409)
..|+.+++
T Consensus 471 ~~i~~~~l 478 (538)
T PRK15424 471 PDLTPQFL 478 (538)
T ss_pred CccCHHHh
Confidence 35665554
No 206
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.83 E-value=6.6e-08 Score=99.89 Aligned_cols=116 Identities=26% Similarity=0.279 Sum_probs=87.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.|+.+ .+..|.+.+++.. ...+|.+|+.... .......+..+|+.|
T Consensus 283 GtL~ldeI~~L~~~-------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~dL~~r 349 (509)
T PRK05022 283 GTLFLDEIGELPLA-------LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLR------EEVRAGRFRADLYHR 349 (509)
T ss_pred CEEEecChhhCCHH-------HHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHH------HHHHcCCccHHHHhc
Confidence 89999999999999 9999999987642 3468888875432 112233467778888
Q ss_pred h--heeecCCCCH--HHHHHHHHHH----Hhhc---CCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKLR----ANTE---GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~~----~~~~---~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
+ +.|.++|+-+ +++..++..- +.+. .+.++++++..+..+..-|+.|.--+.+++++..+.
T Consensus 350 l~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 350 LSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred ccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 7 4577888765 5666655532 3332 367999999999999999999999999999988764
No 207
>KOG1970|consensus
Probab=98.83 E-value=8.8e-08 Score=95.62 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCceEEEecCcceeeecccccCCCCCCCchh--hhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCC------HHHHHHH
Q psy2778 276 IAPIVIFATNRGRCLVRGTDDIISPHGIPLD--LLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLD------DEALVTL 347 (409)
Q Consensus 276 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~------~~~l~~I 347 (409)
..|+|+.-|+-... +. .+..-..|.+ ..-|+..|.|.|+...=|+..|+++|.++..+.+ ...++.|
T Consensus 227 ~~PlIf~iTd~~~~---g~--nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i 301 (634)
T KOG1970|consen 227 RCPLIFIITDSLSN---GN--NNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELI 301 (634)
T ss_pred CCcEEEEEeccccC---CC--cchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHH
Confidence 45766666654321 11 1222222333 3455678999999999999999999999888777 6778999
Q ss_pred HHhcCCccHHHHHHHHHHHH
Q psy2778 348 SEIGTRSTLRYVVQLLTPAA 367 (409)
Q Consensus 348 ~~~s~~g~~R~al~ll~~~~ 367 (409)
+.-+ +||.|-||+.|+...
T Consensus 302 ~~~s-~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 302 CQGS-GGDIRSAINSLQLSS 320 (634)
T ss_pred HHhc-CccHHHHHhHhhhhc
Confidence 9999 999999999999774
No 208
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=3.3e-08 Score=97.12 Aligned_cols=111 Identities=30% Similarity=0.339 Sum_probs=81.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcc------------cCCceEEEecCcceeeecccccCCCCCCCch--hhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALES------------AIAPIVIFATNRGRCLVRGTDDIISPHGIPL--DLL 308 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 308 (409)
|.||.||+|.|+++ -+..|++.||+ +..+.+|.||+. +....+.. ++.
T Consensus 175 GtLfLDEI~~LP~~-------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~-----------~l~~~~~~g~dl~ 236 (403)
T COG1221 175 GTLFLDEIHRLPPE-------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE-----------DLEEAVLAGADLT 236 (403)
T ss_pred CEEehhhhhhCCHh-------HHHHHHHHHHcCceEecCCCCCcCCCceeeecccc-----------CHHHHHHhhcchh
Confidence 89999999999999 99999999998 233668888853 33344444 788
Q ss_pred hhhh--eeecCCCCHH--HHHHHHHH----HHhhcCCCC---CHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 309 DRLL--IIRTTPYNQK--DMEAIIKL----RANTEGHVL---DDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 309 ~r~~--~i~~~~~~~~--e~~~il~~----~~~~~~~~i---~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
.|+. +|.++|+.+- |+..+++. .|.+.+.++ +++++..+..+..-|+.|.--|+++.++..+.
T Consensus 237 ~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 237 RRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred hhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 8774 5778887664 33333332 344444433 35889999999999999999999999998874
No 209
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=2.9e-08 Score=98.24 Aligned_cols=115 Identities=28% Similarity=0.281 Sum_probs=83.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc------------CCceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.||.||+.-++.+ .+..|++.+.+. .+..||.|||+.... ..---..-.||+=|
T Consensus 319 GTLFLDEIGelPL~-------lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~------~V~~G~FRaDLYyR 385 (550)
T COG3604 319 GTLFLDEIGELPLA-------LQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEE------MVRDGEFRADLYYR 385 (550)
T ss_pred CeEechhhccCCHH-------HHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHH------HHHcCcchhhhhhc
Confidence 89999999999999 999999999874 223499999987442 11112334556666
Q ss_pred hh--eeecCCCCH--HHHHHHHHHHHh----hc---CCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 311 LL--IIRTTPYNQ--KDMEAIIKLRAN----TE---GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 311 ~~--~i~~~~~~~--~e~~~il~~~~~----~~---~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
+- .+.++|+-+ +++--+++.-++ .. .+.+++++++.+.++..-|+.|.--|+++++...|
T Consensus 386 LsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 386 LSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 64 355666543 344444433222 22 46899999999999999999999999999999987
No 210
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.78 E-value=4e-08 Score=98.20 Aligned_cols=116 Identities=26% Similarity=0.325 Sum_probs=87.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-Cc-----------eEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-AP-----------IVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.||+||+..++.+ .+..|++.++..- -+ .||-+||+... ....--.+-+||+-|
T Consensus 237 GTLfLDEI~~mpl~-------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~------~~v~~G~FReDLyyR 303 (464)
T COG2204 237 GTLFLDEIGEMPLE-------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE------EEVAAGRFREDLYYR 303 (464)
T ss_pred ceEEeeccccCCHH-------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH------HHHHcCCcHHHHHhh
Confidence 89999999999999 9999999999652 22 38999987643 223334567888889
Q ss_pred hhe--eecCCCCH--HHHHHHHH----HHHhhcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 311 LLI--IRTTPYNQ--KDMEAIIK----LRANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 311 ~~~--i~~~~~~~--~e~~~il~----~~~~~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
+-+ ++++|+-+ ++|--++. ..|+..| ..++++++..+..+.+-|+.|.--|.++++...+.
T Consensus 304 LnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 304 LNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred hccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC
Confidence 865 45556543 44444443 3344443 47999999999999999999999999999998764
No 211
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.77 E-value=1.3e-07 Score=92.15 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=84.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.|+.+ .+..|.+.++... ...+|.+++.... .......+..+|+.|
T Consensus 102 GtL~l~~i~~L~~~-------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~------~l~~~g~f~~dL~~~ 168 (326)
T PRK11608 102 GTLFLDELATAPML-------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP------AMVAEGKFRADLLDR 168 (326)
T ss_pred CeEEeCChhhCCHH-------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHH------HHHHcCCchHHHHHh
Confidence 89999999999999 9999999887642 2356666654321 001123456888888
Q ss_pred h--heeecCCCCH--HHHHHHHHHH----HhhcC----CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKLR----ANTEG----HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~~----~~~~~----~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
+ ..|.++|+-+ +|+..++... +.+.+ ..++++++..+.....-|+.|.--++++.+...+
T Consensus 169 l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 169 LAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred cCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 7 4688888765 5677666543 33333 2589999999999999999999999999988754
No 212
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.76 E-value=7.4e-08 Score=99.65 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=88.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.++.+ .+..|.+.+++.. ...+|.+|+.... .......+.++|+.|
T Consensus 300 GtL~LdeI~~L~~~-------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~------~l~~~g~f~~dL~~r 366 (520)
T PRK10820 300 GSVLLDEIGEMSPR-------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV------ELVQKGEFREDLYYR 366 (520)
T ss_pred CEEEEeChhhCCHH-------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHH------HHHHcCCccHHHHhh
Confidence 89999999999998 8999999887641 2247777764321 011123356778888
Q ss_pred h--heeecCCCCH--HHHHHHHH----HHHhhcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIK----LRANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~----~~~~~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+ ..+.++|+.+ +++..++. ..+.+.+ ..++++++..+..+.+-|+.|.--+.++++...+. ...|+
T Consensus 367 L~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~---~~~i~ 443 (520)
T PRK10820 367 LNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLE---GYELR 443 (520)
T ss_pred cCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC---CCccc
Confidence 6 5688888776 45655443 3344444 37999999999999999999999999999887642 23466
Q ss_pred HHHH
Q psy2778 380 KQDI 383 (409)
Q Consensus 380 ~~~v 383 (409)
.+++
T Consensus 444 ~~~~ 447 (520)
T PRK10820 444 PQDI 447 (520)
T ss_pred HHHc
Confidence 5554
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.70 E-value=4.8e-08 Score=82.41 Aligned_cols=73 Identities=26% Similarity=0.453 Sum_probs=50.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhhhhhhhHHH---HHHHHHHHhhhhcccceEEeccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSSEIKKTEVL---MENFRRAIGLRIKESKEVYEGEV 81 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~~~~~~e~l---~~~f~~a~~~~~~~~~ii~iDEi 81 (409)
.+++++++||||||||++++.+++.+ +. +++.+++.+............ ..... .. .....+.++++||+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~lilDe~ 93 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGA--PFLYLNASDLLEGLVVAELFGHFLVRLLF-EL-AEKAKPGVLFIDEI 93 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCC--CeEEEehhhhhhhhHHHHHhhhhhHhHHH-Hh-hccCCCeEEEEeCh
Confidence 35789999999999999999999998 54 788888876655443322210 01111 11 12346899999999
Q ss_pred ccc
Q psy2778 82 TEL 84 (409)
Q Consensus 82 d~i 84 (409)
+.+
T Consensus 94 ~~~ 96 (151)
T cd00009 94 DSL 96 (151)
T ss_pred hhh
Confidence 987
No 214
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.70 E-value=2.7e-08 Score=106.25 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=47.4
Q ss_pred CCchhhhhhhh-eeecCCCCHHHHHHHHHHHHhh---------cCCCCCHHHHHHHHHhcCC--ccHHHHHHHHHHH
Q psy2778 302 GIPLDLLDRLL-IIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIGTR--STLRYVVQLLTPA 366 (409)
Q Consensus 302 ~~~~~l~~r~~-~i~~~~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~I~~~s~~--g~~R~al~ll~~~ 366 (409)
.++++|++|+- ++.|.|++.+++.+|+.....+ -.+.++++++++|++.+-. .++|---.+++.-
T Consensus 635 ~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 635 IFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred hcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 45678999995 8999999999999999865432 2568899999999987522 2455444444443
No 215
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.69 E-value=8.4e-08 Score=96.12 Aligned_cols=127 Identities=24% Similarity=0.286 Sum_probs=88.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc------------CCceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|.||+..++.. .+..|+|.+++. ....||-|||+.... -..--.+-.||+=|
T Consensus 342 GTLFLDEIgempl~-------LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~------~i~~G~FReDLYYR 408 (560)
T COG3829 342 GTLFLDEIGEMPLP-------LQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEK------MIAEGTFREDLYYR 408 (560)
T ss_pred CeEEehhhccCCHH-------HHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHH------HHhcCcchhhheee
Confidence 89999999999999 999999999874 123489999987542 22233456667777
Q ss_pred hhe--eecCCCCH--HHHHHHHHHHHh----hc--CCC-CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 LLI--IRTTPYNQ--KDMEAIIKLRAN----TE--GHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~~~--i~~~~~~~--~e~~~il~~~~~----~~--~~~-i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+-+ +.++|+-+ +++.-++..-.. .. .++ ++++++..+.+..+-|+.|.--|++|++..+... ...|+
T Consensus 409 LNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~~--~~~I~ 486 (560)
T COG3829 409 LNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVES--DGLID 486 (560)
T ss_pred eceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccCC--cceee
Confidence 754 55556432 455544443322 22 455 9999999999999999999999999999875432 22355
Q ss_pred HHHHH
Q psy2778 380 KQDIL 384 (409)
Q Consensus 380 ~~~v~ 384 (409)
.+|+-
T Consensus 487 ~~~lp 491 (560)
T COG3829 487 ADDLP 491 (560)
T ss_pred hhhcc
Confidence 55543
No 216
>KOG1968|consensus
Probab=98.64 E-value=9.6e-08 Score=102.47 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=74.9
Q ss_pred hHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHH
Q psy2778 264 TFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA 343 (409)
Q Consensus 264 ~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~ 343 (409)
.+..|...++....|+++.+.++. |.-+..+.+-|+.++|..+..+.+..-+...|..+++.|+++.
T Consensus 447 ~v~~l~~l~~ks~~Piv~~cndr~-------------~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~ 513 (871)
T KOG1968|consen 447 GVSKLSSLCKKSSRPLVCTCNDRN-------------LPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDV 513 (871)
T ss_pred hHHHHHHHHHhccCCeEEEecCCC-------------CccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHH
Confidence 355555666655679999988653 2334445666799999999999999999999999999999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHH
Q psy2778 344 LVTLSEIGTRSTLRYVVQLLTPAAL 368 (409)
Q Consensus 344 l~~I~~~s~~g~~R~al~ll~~~~~ 368 (409)
++.+.+.+ +||+|..+++|..-..
T Consensus 514 l~~~s~~~-~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 514 LEEISKLS-GGDIRQIIMQLQFWSL 537 (871)
T ss_pred HHHHHHhc-ccCHHHHHHHHhhhhc
Confidence 99999999 9999999999997743
No 217
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.63 E-value=3.4e-07 Score=98.08 Aligned_cols=115 Identities=29% Similarity=0.336 Sum_probs=83.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.++.+ .+..|.+.+++.. ...+|.+|+..... ....-.+..++..|
T Consensus 472 GtL~Ldei~~L~~~-------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~------~~~~~~f~~~L~~~ 538 (686)
T PRK15429 472 SSLFLDEVGDMPLE-------LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK------MVADREFRSDLYYR 538 (686)
T ss_pred CeEEEechhhCCHH-------HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHH------HHHcCcccHHHHhc
Confidence 89999999999999 9999999887642 23577777654211 11123455667777
Q ss_pred h--heeecCCCCH--HHHHHHHHHH----HhhcC--C-CCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKLR----ANTEG--H-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~~----~~~~~--~-~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
+ ..|.++|+-+ +|+..++..- +.+.+ + .+++++++.+.....-|+.|.--++++++...+
T Consensus 539 l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 539 LNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred cCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 5 4578888765 5666565533 33323 3 489999999999999999999999999998764
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.59 E-value=1.1e-07 Score=94.83 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=49.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCC-----ccEEEecCc----hhhhhh----hhh--hH-HHHHHHHHHHhhhhc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNK-----VPFCPMVGS----EVFSSE----IKK--TE-VLMENFRRAIGLRIK 71 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~-----~~~v~i~~~----~l~~~~----~~~--~e-~l~~~f~~a~~~~~~ 71 (409)
.+++++|+||||||||++|+++|+.+... +..+.+..+ ++.+.+ +|- .. .+.+++++|.. ...
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~-~p~ 271 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKE-QPE 271 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHh-ccc
Confidence 46799999999999999999999998542 223333332 222111 110 11 23445555542 123
Q ss_pred ccceEEeccccccccc
Q psy2778 72 ESKEVYEGEVTELTPV 87 (409)
Q Consensus 72 ~~~ii~iDEid~i~~~ 87 (409)
.|+++||||+++...+
T Consensus 272 ~~~vliIDEINRani~ 287 (459)
T PRK11331 272 KKYVFIIDEINRANLS 287 (459)
T ss_pred CCcEEEEehhhccCHH
Confidence 6799999999987443
No 219
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.59 E-value=2e-06 Score=92.08 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=92.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-------------Cc-eEEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-------------AP-IVIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-------------~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
|+++|||++.++.. .+.+|+.+||... .. .||.++|..-.......+...-..+|+.++
T Consensus 559 GtL~IDEidkms~~-------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 559 GVCCIDELDKCHNE-------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred CeEEecchhhCCHH-------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 89999999999998 9999999998752 22 355555543211111112223456899999
Q ss_pred hhh-heeec-CCCCHHHHHHHHHHHHh----------------------------------------------------h
Q psy2778 309 DRL-LIIRT-TPYNQKDMEAIIKLRAN----------------------------------------------------T 334 (409)
Q Consensus 309 ~r~-~~i~~-~~~~~~e~~~il~~~~~----------------------------------------------------~ 334 (409)
||+ +++-+ .+++.+.-..+...+++ +
T Consensus 632 SRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~ 711 (915)
T PTZ00111 632 TRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKL 711 (915)
T ss_pred hhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhc
Confidence 999 44333 33444433333322221 1
Q ss_pred c-CCCCCHHHHHHHHH-----hcC-------------------------Cc------cHHHHHHHHHHHHHHHHHhCCCC
Q psy2778 335 E-GHVLDDEALVTLSE-----IGT-------------------------RS------TLRYVVQLLTPAALTAKTNGRTA 377 (409)
Q Consensus 335 ~-~~~i~~~~l~~I~~-----~s~-------------------------~g------~~R~al~ll~~~~~~a~~~~~~~ 377 (409)
. .=.+++++.+.|.+ +.. .| ++|.--.+++.+-.+|..+=+..
T Consensus 712 ~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~ 791 (915)
T PTZ00111 712 HCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTV 791 (915)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCc
Confidence 0 11367888888744 110 11 48888888888888888877889
Q ss_pred ccHHHHHHHHHhccCh
Q psy2778 378 ISKQDILEVSTLFLDA 393 (409)
Q Consensus 378 I~~~~v~~~~~~~~~~ 393 (409)
|+.+||++|..+|..+
T Consensus 792 Vt~~Dv~~Ai~L~~~s 807 (915)
T PTZ00111 792 VTPADALQAVQIVKSS 807 (915)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999987543
No 220
>PRK15115 response regulator GlrR; Provisional
Probab=98.59 E-value=1e-06 Score=89.60 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=87.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.|+.+ .+..|.+.+++.. ...+|.+|+.... .......+..+++.|
T Consensus 230 gtl~l~~i~~l~~~-------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~l~~~ 296 (444)
T PRK15115 230 GTLFLDEIGDMPAP-------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLP------KAMARGEFREDLYYR 296 (444)
T ss_pred CEEEEEccccCCHH-------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHH------HHHHcCCccHHHHHh
Confidence 79999999999999 9999999998653 2356666654321 011112445666666
Q ss_pred hh--eeecCCCCH--HHHHHHHHHHHh----hcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 LL--IIRTTPYNQ--KDMEAIIKLRAN----TEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~~--~i~~~~~~~--~e~~~il~~~~~----~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+- .|.++|+-+ +++..++..... ..+ ..+++++++.+..+..-|+.|.--+.++.+...+. ...|+
T Consensus 297 l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~---~~~i~ 373 (444)
T PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS---SPVIS 373 (444)
T ss_pred hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCccC
Confidence 53 466677654 456555444332 222 24899999999999999999999999999887642 34577
Q ss_pred HHHHHH
Q psy2778 380 KQDILE 385 (409)
Q Consensus 380 ~~~v~~ 385 (409)
.+++..
T Consensus 374 ~~~l~~ 379 (444)
T PRK15115 374 DALVEQ 379 (444)
T ss_pred hhhhhh
Confidence 777653
No 221
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.5e-07 Score=88.71 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=91.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc--------------eEEEecCcceeeecccccC-----------
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP--------------IVIFATNRGRCLVRGTDDI----------- 297 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~--------------~~i~~~~~~~~~~~~~~~~----------- 297 (409)
||||+||.-..... .++.|..-||+.... .+++|+|.-.+-.-+. ..
T Consensus 285 GVLFLDElpef~~~-------iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~-~~~~C~c~~~~~~ 356 (490)
T COG0606 285 GVLFLDELPEFKRS-------ILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGA-PLRRCPCSPRQIK 356 (490)
T ss_pred CEEEeeccchhhHH-------HHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCC-CCCCcCCCHHHHH
Confidence 89999999998888 999999999985332 2566777654422111 00
Q ss_pred CCCCCCchhhhhhh-heeecCCCCHH-------------HHHHHHH-------HHHhhc--CCCCCHHHHHHHHHhcCCc
Q psy2778 298 ISPHGIPLDLLDRL-LIIRTTPYNQK-------------DMEAIIK-------LRANTE--GHVLDDEALVTLSEIGTRS 354 (409)
Q Consensus 298 ~~~~~~~~~l~~r~-~~i~~~~~~~~-------------e~~~il~-------~~~~~~--~~~i~~~~l~~I~~~s~~g 354 (409)
.....+...|++|+ +.+.++.++.. ++.+-+. .++.+. |..++.+.++..+.+...+
T Consensus 357 ~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~ 436 (490)
T COG0606 357 RYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQRED 436 (490)
T ss_pred HHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhH
Confidence 01122355688998 45666655532 2333222 122233 5677777777776665221
Q ss_pred -------------cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 355 -------------TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 355 -------------~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
|.|..-.+|..+..+|..+|...|...|+.++.+.
T Consensus 437 ~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 437 ADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 67888889999999999899999999999998863
No 222
>PRK08181 transposase; Validated
Probab=98.58 E-value=1.1e-07 Score=89.58 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC-CCccEEEecCchhhhhhhhh-hH-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG-NKVPFCPMVGSEVFSSEIKK-TE-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~~l~~~~~~~-~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
.+.+++|+||||||||+||.++|+++- ....++.++..++....... .+ .+.+.++.. ..+.+|+|||++.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l-----~~~dLLIIDDlg~~ 179 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL-----DKFDLLILDDLAYV 179 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH-----hcCCEEEEeccccc
Confidence 356899999999999999999998761 12366777777766543221 11 233344433 46789999999887
Q ss_pred cc
Q psy2778 85 TP 86 (409)
Q Consensus 85 ~~ 86 (409)
..
T Consensus 180 ~~ 181 (269)
T PRK08181 180 TK 181 (269)
T ss_pred cC
Confidence 44
No 223
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.56 E-value=3.4e-06 Score=79.76 Aligned_cols=135 Identities=17% Similarity=0.158 Sum_probs=93.3
Q ss_pred cCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 241 VPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
...+++|||+|.+=.-+...+-+..++|....+...-|+|.+.|......+ .-.+++-+|+..+.+++..
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al----------~~D~QLa~RF~~~~Lp~W~ 214 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRAL----------RTDPQLASRFEPFELPRWE 214 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHh----------ccCHHHHhccCCccCCCCC
Confidence 347999999997533222233445666666655656699888876543221 2236699999999988754
Q ss_pred H-HHHHHHHHHHHhhc----CCC-CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 321 Q-KDMEAIIKLRANTE----GHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 321 ~-~e~~~il~~~~~~~----~~~-i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
. +|...+|..-.... .-. -+++...+|-..| +|..-.-..+|..|+..|...|.+.||.+.+..+
T Consensus 215 ~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s-~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 215 LDEEFRRLLASFERALPLRKPSNLASPELARRIHERS-EGLIGELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 4 45566665333221 112 3456669999999 8999999999999999999999999999888654
No 224
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.55 E-value=1.4e-08 Score=86.18 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=42.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch------hhhhhhhhhHHHHHHHHHHH-hhhhcccceEEeccccc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE------VFSSEIKKTEVLMENFRRAI-GLRIKESKEVYEGEVTE 83 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~------l~~~~~~~~e~l~~~f~~a~-~~~~~~~~ii~iDEid~ 83 (409)
+|||+||||||||++|+.+|+.++. +++.++.+. +.+.+.-... ...+.... ......++++++||++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~--~~~~i~~~~~~~~~dl~g~~~~~~~--~~~~~~~~l~~a~~~~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR--PVIRINCSSDTTEEDLIGSYDPSNG--QFEFKDGPLVRAMRKGGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC--EEEEEE-TTTSTHHHHHCEEET-TT--TTCEEE-CCCTTHHEEEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc--ceEEEEeccccccccceeeeeeccc--ccccccccccccccceeEEEECCccc
Confidence 6899999999999999999999987 555555433 2222221000 00000000 00123678999999998
Q ss_pred cc
Q psy2778 84 LT 85 (409)
Q Consensus 84 i~ 85 (409)
..
T Consensus 77 a~ 78 (139)
T PF07728_consen 77 AP 78 (139)
T ss_dssp --
T ss_pred CC
Confidence 73
No 225
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.53 E-value=5.7e-06 Score=75.81 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=89.6
Q ss_pred CcccccccccccccccCchhhhHHHHHH---HhcccCCce-EEEecCcceeeecccccCCC--CCCCchhhhhhhhe-ee
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHR---ALESAIAPI-VIFATNRGRCLVRGTDDIIS--PHGIPLDLLDRLLI-IR 315 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~---~~e~~~~~~-~i~~~~~~~~~~~~~~~~~~--~~~~~~~l~~r~~~-i~ 315 (409)
-++++||+|-|+.+ ...+|.. .-+.+.+|. +++.-.. +..+ -...-.++..|+.+ |.
T Consensus 133 v~l~vdEah~L~~~-------~le~Lrll~nl~~~~~~~l~ivL~Gqp---------~L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEALRLLTNLEEDSSKLLSIVLIGQP---------KLRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred eEEeehhHhhhChh-------HHHHHHHHHhhcccccCceeeeecCCc---------ccchhhchHHHHhhhheEEEEEe
Confidence 58999999999987 5555554 333445562 2222221 1222 23345678889988 99
Q ss_pred cCCCCHHHHHHHHHHHHhhcCC---CCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q psy2778 316 TTPYNQKDMEAIIKLRANTEGH---VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 384 (409)
Q Consensus 316 ~~~~~~~e~~~il~~~~~~~~~---~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~ 384 (409)
+.|++.++....++.+.+.-+. -++++++..|...+ .|-||.-.+++..|...|-..|+..|+...++
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s-qg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS-QGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHh-ccchHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999999999999988765432 36799999999999 88999888888888877766677778766553
No 226
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.53 E-value=1.6e-06 Score=88.29 Aligned_cols=125 Identities=23% Similarity=0.279 Sum_probs=87.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.|+.+ .+..|.+.+++.. ...+|++++.... .......+.++|..|
T Consensus 235 gtl~l~~i~~l~~~-------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~ 301 (445)
T TIGR02915 235 GTLFLDEIGDLPLN-------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLK------RMIAEGTFREDLFYR 301 (445)
T ss_pred CEEEEechhhCCHH-------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHH------HHHHcCCccHHHHHH
Confidence 89999999999999 9999999888642 2356777764321 111123456778888
Q ss_pred hh--eeecCCCCH--HHHHHHHHHHH----hhcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 LL--IIRTTPYNQ--KDMEAIIKLRA----NTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~~--~i~~~~~~~--~e~~~il~~~~----~~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+- .|.++|+-+ +++..++.... ...+ ..++++++..+..+..-|+.|.--++++.+...+. ...|+
T Consensus 302 l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~ 378 (445)
T TIGR02915 302 IAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE---GNQIT 378 (445)
T ss_pred hccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCccc
Confidence 74 577777655 45555554332 2223 46999999999999999999999999999987653 23455
Q ss_pred HHHH
Q psy2778 380 KQDI 383 (409)
Q Consensus 380 ~~~v 383 (409)
.+++
T Consensus 379 ~~~l 382 (445)
T TIGR02915 379 AEDL 382 (445)
T ss_pred HHHc
Confidence 5554
No 227
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.52 E-value=1.7e-06 Score=79.36 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=58.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcc---cCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALES---AIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTP 318 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~---~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~ 318 (409)
-+++|||++.+... ..........|.+.++. .... +|+.++...... . ...-...+.+|+..+.++|
T Consensus 120 ~iiviDe~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~-~-------~~~~~~~~~~~~~~~~l~~ 190 (234)
T PF01637_consen 120 VIIVIDEFQYLAIA-SEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME-E-------FLDDKSPLFGRFSHIELKP 190 (234)
T ss_dssp EEEEEETGGGGGBC-TTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH-H-------TT-TTSTTTT---EEEE--
T ss_pred EEEEEecHHHHhhc-ccchHHHHHHHHHHHhhccccCCceEEEECCchHHHH-H-------hhcccCccccccceEEEee
Confidence 48999999988710 00011234455555554 2233 333333321110 0 1122233888998899999
Q ss_pred CCHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHhcCCccHHHHH
Q psy2778 319 YNQKDMEAIIKLRANTEGHV--LDDEALVTLSEIGTRSTLRYVV 360 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~~~~~--i~~~~l~~I~~~s~~g~~R~al 360 (409)
++.++..++++...... .. ++++.++.|..++ +|.|++-.
T Consensus 191 l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-gG~P~~l~ 232 (234)
T PF01637_consen 191 LSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLT-GGNPRYLQ 232 (234)
T ss_dssp --HHHHHHHHHHHHHCC-------HHHHHHHHHHH-TT-HHHHH
T ss_pred CCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHh-CCCHHHHh
Confidence 99999999999877665 54 5999999999999 99998754
No 228
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.51 E-value=2.5e-06 Score=87.46 Aligned_cols=126 Identities=21% Similarity=0.281 Sum_probs=89.6
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.|+.+ .+..|.+.+++.. ...+|++++.... .......+..+|+.|
T Consensus 234 Gtl~l~~i~~l~~~-------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~ 300 (469)
T PRK10923 234 GTLFLDEIGDMPLD-------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLE------QRVQEGKFREDLFHR 300 (469)
T ss_pred CEEEEeccccCCHH-------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHH------HHHHcCCchHHHHHH
Confidence 78999999999999 9999999888642 1257777654321 011123456788998
Q ss_pred h--heeecCCCCH--HHHHHHHHHHHh----hcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKLRAN----TEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~~~~----~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+ ..|.++|+-+ +++..++..-.+ ..+ ..++++++..+..+..-|+.|.--++++++...+. ...|+
T Consensus 301 l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~---~~~i~ 377 (469)
T PRK10923 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA---GQEVL 377 (469)
T ss_pred hcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCccc
Confidence 7 5677788665 566666554332 222 25899999999999999999999999999987653 24577
Q ss_pred HHHHH
Q psy2778 380 KQDIL 384 (409)
Q Consensus 380 ~~~v~ 384 (409)
.+++.
T Consensus 378 ~~~l~ 382 (469)
T PRK10923 378 IQDLP 382 (469)
T ss_pred HHHCc
Confidence 66663
No 229
>KOG2227|consensus
Probab=98.49 E-value=3.9e-06 Score=82.70 Aligned_cols=116 Identities=21% Similarity=0.202 Sum_probs=78.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCc---e-EEEecCcceeeecccccCCCCCCCchhhhhhh----hee
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAP---I-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRL----LII 314 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~---~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~----~~i 314 (409)
=+++.||.+.|... ....|+..-|++.-| + +|+.+|... -...+.+-|-.|+ .++
T Consensus 258 ~llVlDEmD~L~tr-------~~~vLy~lFewp~lp~sr~iLiGiANslD----------lTdR~LprL~~~~~~~P~~l 320 (529)
T KOG2227|consen 258 LLLVLDEMDHLITR-------SQTVLYTLFEWPKLPNSRIILIGIANSLD----------LTDRFLPRLNLDLTIKPKLL 320 (529)
T ss_pred EEEEechhhHHhhc-------ccceeeeehhcccCCcceeeeeeehhhhh----------HHHHHhhhhhhccCCCCcee
Confidence 48889999988766 666677666665332 2 344444210 0111111122222 158
Q ss_pred ecCCCCHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHhCC
Q psy2778 315 RTTPYNQKDMEAIIKLRANTEGH-VLDDEALVTLSEI--GTRSTLRYVVQLLTPAALTAKTNGR 375 (409)
Q Consensus 315 ~~~~~~~~e~~~il~~~~~~~~~-~i~~~~l~~I~~~--s~~g~~R~al~ll~~~~~~a~~~~~ 375 (409)
.|+|||.++|.+|++.+..++.. .+-+.+++.+++- +..||+|.|+.+++.|...++.+.+
T Consensus 321 ~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 321 VFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKR 384 (529)
T ss_pred eecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887653 4556688888776 4578999999999999999876543
No 230
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.48 E-value=5.2e-06 Score=75.24 Aligned_cols=59 Identities=25% Similarity=0.283 Sum_probs=47.1
Q ss_pred hhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHH-----HHhcCCccHHHHHHHHHHH
Q psy2778 307 LLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTL-----SEIGTRSTLRYVVQLLTPA 366 (409)
Q Consensus 307 l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I-----~~~s~~g~~R~al~ll~~~ 366 (409)
+=+|+ +-+.|.|.+.++-..++...+++.+++++++.++.= .... +.|.|-|-+.+...
T Consensus 213 lSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg-~RSGR~A~QF~~~~ 277 (287)
T COG2607 213 LSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRG-GRSGRVAWQFIRDL 277 (287)
T ss_pred hhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCccHhHHHHHHHH
Confidence 55777 779999999999999999999999999998766543 3334 66889888877644
No 231
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.48 E-value=3.2e-06 Score=86.48 Aligned_cols=127 Identities=23% Similarity=0.298 Sum_probs=93.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.|+.+ .+..|.+.+++.. ...+|.+++..... ......+.++++.|
T Consensus 230 gtl~l~ei~~l~~~-------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~------~~~~~~f~~~L~~r 296 (463)
T TIGR01818 230 GTLFLDEIGDMPLD-------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEA------LVRQGKFREDLFHR 296 (463)
T ss_pred CeEEEEchhhCCHH-------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHH------HHHcCCcHHHHHHH
Confidence 79999999999999 8999999888642 23477777643210 11122345688888
Q ss_pred h--heeecCCCC--HHHHHHHHHHHHh----hcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 L--LIIRTTPYN--QKDMEAIIKLRAN----TEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~--~~i~~~~~~--~~e~~~il~~~~~----~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+ ..|.++|+. .+++..++....+ ..+ ..++++++..|..+..-|+.|.--++++.+...+. ...|+
T Consensus 297 l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~ 373 (463)
T TIGR01818 297 LNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS---GDEVL 373 (463)
T ss_pred hCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCccc
Confidence 7 468888988 6788887765432 223 46899999999999999999999999999987653 24577
Q ss_pred HHHHHH
Q psy2778 380 KQDILE 385 (409)
Q Consensus 380 ~~~v~~ 385 (409)
.+++..
T Consensus 374 ~~~l~~ 379 (463)
T TIGR01818 374 VSDLPA 379 (463)
T ss_pred HHhchH
Confidence 777643
No 232
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.48 E-value=2.1e-06 Score=87.65 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=86.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.|+.+ .+..|.+.+++.. ...+|++|+..... ....-.+..++..|
T Consensus 239 gtl~ld~i~~l~~~-------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~------~~~~g~~~~~l~~~ 305 (457)
T PRK11361 239 GTLLLDEIGEMPLV-------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQA------MVKEGTFREDLFYR 305 (457)
T ss_pred CEEEEechhhCCHH-------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHH------HHHcCCchHHHHHH
Confidence 79999999999999 8999999887642 13577777643211 01122345567777
Q ss_pred hh--eeecCCCCH--HHHHHHHHHH----HhhcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 LL--IIRTTPYNQ--KDMEAIIKLR----ANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~~--~i~~~~~~~--~e~~~il~~~----~~~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+- .|.++|+-+ +++..++..- +...+ ..+++++++.+..+..-|+.|.--+.++.+...+. ...|+
T Consensus 306 l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~---~~~i~ 382 (457)
T PRK11361 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS---GPIIF 382 (457)
T ss_pred hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC---CCccc
Confidence 64 466667653 5555554432 22222 46899999999999999999999999999886542 24566
Q ss_pred HHHHH
Q psy2778 380 KQDIL 384 (409)
Q Consensus 380 ~~~v~ 384 (409)
.+++.
T Consensus 383 ~~~l~ 387 (457)
T PRK11361 383 SEDLP 387 (457)
T ss_pred HHHCh
Confidence 66654
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.47 E-value=4.5e-07 Score=79.66 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=32.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC-CCccEEEecCchhh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG-NKVPFCPMVGSEVF 48 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~~l~ 48 (409)
.+.+|||+|++||||+.+|++|.+... .+-||+.++++.+.
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~ 62 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP 62 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh
Confidence 357999999999999999999999764 23599999998763
No 234
>PRK06526 transposase; Provisional
Probab=98.46 E-value=2.3e-07 Score=86.98 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=45.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhhhhhh-hH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSSEIKK-TE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~~~~~-~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+.+++|+||||||||++|.+|+.++ |. .+...+..++....... .. .+.+.++. ...+.+|+|||++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~--~v~f~t~~~l~~~l~~~~~~~~~~~~l~~-----l~~~dlLIIDD~g~ 170 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGH--RVLFATAAQWVARLAAAHHAGRLQAELVK-----LGRYPLLIVDEVGY 170 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCC--chhhhhHHHHHHHHHHHHhcCcHHHHHHH-----hccCCEEEEccccc
Confidence 4699999999999999999999876 43 44445555544322111 00 22222322 23578999999998
Q ss_pred cc
Q psy2778 84 LT 85 (409)
Q Consensus 84 i~ 85 (409)
+.
T Consensus 171 ~~ 172 (254)
T PRK06526 171 IP 172 (254)
T ss_pred CC
Confidence 74
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.45 E-value=2.3e-07 Score=82.35 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=46.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCchhhhhhhhh--hHHHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSEVFSSEIKK--TEVLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~l~~~~~~~--~e~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
+.+++|+||||||||++|.++|+++ ....+...++.++++..-... .....+.++.. ....+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-----~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL-----KRVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-----HTSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc-----ccccEeccccccee
Confidence 5799999999999999999999877 222477777887776543221 11222333333 35789999998654
No 236
>PRK12377 putative replication protein; Provisional
Probab=98.43 E-value=5.2e-07 Score=84.09 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=47.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhh---hHHHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKK---TEVLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~---~e~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
.+++|+||||||||+||.|||+++.. ...++.++..++....... .+...+.++. .....+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~-----l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE-----LCKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH-----hcCCCEEEEcCCCCC
Confidence 68999999999999999999999832 2356777777765532211 1111222332 246789999999765
No 237
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.41 E-value=5.6e-06 Score=84.09 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=88.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.|+.+ .+..|.+.+++.. ...+|.+|+.... .......+..+|+.|
T Consensus 235 gtl~ldei~~l~~~-------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~------~~~~~~~~~~~l~~~ 301 (441)
T PRK10365 235 GTLFLDEIGDISPM-------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA------AEVNAGRFRQDLYYR 301 (441)
T ss_pred CEEEEeccccCCHH-------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHH
Confidence 89999999999999 8999999888753 2246777754321 112234466777777
Q ss_pred hh--eeecCCCCH--HHHHHHHHHHHhh----cC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 LL--IIRTTPYNQ--KDMEAIIKLRANT----EG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~~--~i~~~~~~~--~e~~~il~~~~~~----~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+- .+.++|+-+ +++..++.....+ .+ ..++++++..+.....-|+.|...++++.+...+. ...|+
T Consensus 302 l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~---~~~i~ 378 (441)
T PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLT---GEYIS 378 (441)
T ss_pred hccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CCccc
Confidence 64 456666554 3555555543322 22 35899999999999999999999999999887542 24577
Q ss_pred HHHHHH
Q psy2778 380 KQDILE 385 (409)
Q Consensus 380 ~~~v~~ 385 (409)
.+++..
T Consensus 379 ~~~l~~ 384 (441)
T PRK10365 379 ERELPL 384 (441)
T ss_pred hHhCch
Confidence 666643
No 238
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.40 E-value=5.3e-07 Score=98.29 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=41.7
Q ss_pred Cchhhhhhh-heeecCCCCHHHHHHHHHHHHhh-------c--CCCCCHHHHHHHHHhc
Q psy2778 303 IPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------E--GHVLDDEALVTLSEIG 351 (409)
Q Consensus 303 ~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~-------~--~~~i~~~~l~~I~~~s 351 (409)
++++|++|+ .++.|.|++.+++.+|+....++ . .+.+++++.++|++.+
T Consensus 702 f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 702 FRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred cCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 567899999 89999999999999999866543 2 4689999999999974
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.39 E-value=6.6e-07 Score=83.23 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhh---hH-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKK---TE-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~---~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
.+++|+||||||||+|+.++|+++.. ...++.++.+++....... .. ...+.++.. ....+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l-----~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL-----SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh-----ccCCEEEEeCCCCC
Confidence 58999999999999999999999822 2367777777776533221 11 122333332 36789999999876
No 240
>PRK08116 hypothetical protein; Validated
Probab=98.37 E-value=7.6e-07 Score=84.27 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=47.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC-CCccEEEecCchhhhhhhhh----h-HHHHHHHHHHHhhhhcccceEEecccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG-NKVPFCPMVGSEVFSSEIKK----T-EVLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~~l~~~~~~~----~-e~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
+.+++|+||||||||+||.++|+++. ...+++.++.+++....... . +...+.++.. ....+|+|||+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l-----~~~dlLviDDlg 188 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL-----VNADLLILDDLG 188 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh-----cCCCEEEEeccc
Confidence 46799999999999999999999972 12478888887766543221 1 1112222222 356799999996
Q ss_pred c
Q psy2778 83 E 83 (409)
Q Consensus 83 ~ 83 (409)
.
T Consensus 189 ~ 189 (268)
T PRK08116 189 A 189 (268)
T ss_pred C
Confidence 4
No 241
>PRK06921 hypothetical protein; Provisional
Probab=98.37 E-value=8.4e-07 Score=83.85 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC--CccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN--KVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~--~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+.+++|+||||||||+|+.|||+++.. ...++.++..+++.........+.+.++ ......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~-----~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLN-----RMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHH-----HhcCCCEEEEecccc
Confidence 468999999999999999999998742 2466777776654432111111111111 134678999999944
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.37 E-value=8.6e-07 Score=85.39 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=46.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhh--HHHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKT--EVLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~--e~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
++|++|+||||||||+|+.|+|+++.. ......+..+++........ ..+.+.++. .....+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~-----l~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA-----VKEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH-----hcCCCEEEEecCCCc
Confidence 579999999999999999999999821 13555555555543322110 012233333 246789999999764
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=9.8e-07 Score=83.12 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCchhhhhhhhh-hH-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSEVFSSEIKK-TE-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~l~~~~~~~-~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
.+.+++|+||||||||+++.+++... .....+..++..++....... .. .+...++.. ...+.++++||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~----~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG----VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH----hcCCCEEEEcccccC
Confidence 35689999999999999999998774 111255666666665432221 11 233444432 246789999999875
Q ss_pred c
Q psy2778 85 T 85 (409)
Q Consensus 85 ~ 85 (409)
.
T Consensus 177 ~ 177 (259)
T PRK09183 177 P 177 (259)
T ss_pred C
Confidence 3
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.36 E-value=8.5e-07 Score=83.21 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhhH--HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKTE--VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~e--~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
.+.+++|+||||||||+||-|||+++-. ...+..++.+++...-...-. .....+.. ......+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~----~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR----ELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH----HhhcCCEEEEecccCc
Confidence 3579999999999999999999999832 257788888777654332111 11111111 1246789999999876
No 245
>PF13173 AAA_14: AAA domain
Probab=98.36 E-value=1.2e-06 Score=73.36 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=47.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
+.++++||+|||||++++.+++.+...-.++.++..+.........+ +.+.+.+.. ...+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELI---KPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhh---ccCCcEEEEehhhhh
Confidence 57899999999999999999988751126777777655443222111 223333221 126789999999988
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.26 E-value=1.9e-06 Score=83.72 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=48.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC-CCccEEEecCchhhhhhhhh----hHHHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG-NKVPFCPMVGSEVFSSEIKK----TEVLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~~l~~~~~~~----~e~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+.+++|+||||||||+|+.|+|+++- ....++.++..+++...... .......++. .....+|+||++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~-----l~~~DLLIIDDlG~ 257 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL-----LINCDLLIIDDLGT 257 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH-----hccCCEEEEeccCC
Confidence 37899999999999999999999982 12377888888776543221 1111111222 24568999999977
Q ss_pred c
Q psy2778 84 L 84 (409)
Q Consensus 84 i 84 (409)
.
T Consensus 258 e 258 (329)
T PRK06835 258 E 258 (329)
T ss_pred C
Confidence 6
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.14 E-value=2e-06 Score=71.89 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=43.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC------CccEEEecCchhhh-h--------hhh-------hhHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN------KVPFCPMVGSEVFS-S--------EIK-------KTEVLMENFRRAI 66 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~------~~~~v~i~~~~l~~-~--------~~~-------~~e~l~~~f~~a~ 66 (409)
++.++++||||+|||++++.+++.+.. +.+++.++.+...+ . ..+ ....+.+.+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 468999999999999999999998832 24666666543321 0 000 0112223333332
Q ss_pred hhhhcccceEEeccccccc
Q psy2778 67 GLRIKESKEVYEGEVTELT 85 (409)
Q Consensus 67 ~~~~~~~~ii~iDEid~i~ 85 (409)
. .....+|++||+|.+.
T Consensus 84 ~--~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 D--RRRVVLLVIDEADHLF 100 (131)
T ss_dssp H--HCTEEEEEEETTHHHH
T ss_pred H--hcCCeEEEEeChHhcC
Confidence 1 2233599999999984
No 248
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.14 E-value=2e-05 Score=87.23 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=53.0
Q ss_pred eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHH
Q psy2778 279 IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRY 358 (409)
Q Consensus 279 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~ 358 (409)
..+|||+.++...+|- .++.+++++|++.++|....++|+..||..+ .+|.+.-..-|++.-.+-+.|+
T Consensus 1000 F~lFATQNppg~YgGR------K~LSrAFRNRFlE~hFddipedEle~ILh~r-----c~iapSyakKiVeVyr~Ls~rR 1068 (4600)
T COG5271 1000 FRLFATQNPPGGYGGR------KGLSRAFRNRFLEMHFDDIPEDELEEILHGR-----CEIAPSYAKKIVEVYRGLSSRR 1068 (4600)
T ss_pred eeEEeecCCCccccch------HHHHHHHHhhhHhhhcccCcHHHHHHHHhcc-----CccCHHHHHHHHHHHHHhhhhh
Confidence 4678887765554444 6789999999999999999999999999944 5667777777766642334444
Q ss_pred HHH
Q psy2778 359 VVQ 361 (409)
Q Consensus 359 al~ 361 (409)
.++
T Consensus 1069 s~~ 1071 (4600)
T COG5271 1069 SIN 1071 (4600)
T ss_pred hHH
Confidence 444
No 249
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.14 E-value=1.4e-06 Score=85.05 Aligned_cols=142 Identities=22% Similarity=0.219 Sum_probs=84.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC--------------ceEEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA--------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~--------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
|++.|||.+.++.+ ....|+.+||...- .-|+.++|..........+...-..+|+.++
T Consensus 123 GiccIDe~dk~~~~-------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LL 195 (331)
T PF00493_consen 123 GICCIDEFDKMKED-------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLL 195 (331)
T ss_dssp SEEEECTTTT--CH-------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCH
T ss_pred ceeeecccccccch-------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhH
Confidence 89999999999998 89999999998422 2255555543211111112222336888999
Q ss_pred hhhhe-eec-CCCCHHHHHHHHHHH---------------------------------Hh-hcCCCCCHHHHHHHHHhc-
Q psy2778 309 DRLLI-IRT-TPYNQKDMEAIIKLR---------------------------------AN-TEGHVLDDEALVTLSEIG- 351 (409)
Q Consensus 309 ~r~~~-i~~-~~~~~~e~~~il~~~---------------------------------~~-~~~~~i~~~~l~~I~~~s- 351 (409)
||+-. +.+ .+.+.+.-..+.+.+ |+ ...-.+++++.++|.+.=
T Consensus 196 SRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv 275 (331)
T PF00493_consen 196 SRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYV 275 (331)
T ss_dssp CC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHC
T ss_pred hhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHH
Confidence 99954 343 344433333333321 11 234467788888885541
Q ss_pred ------------CCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 352 ------------TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 352 ------------~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
..-++|.-..+++.+..+|..+-+..|+.+||..+..+|.
T Consensus 276 ~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 276 ELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp CCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred HhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 0124777788999999999988899999999999998863
No 250
>PHA00729 NTP-binding motif containing protein
Probab=98.03 E-value=6.5e-06 Score=75.16 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.+++++||||||||++|.+||+.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999975
No 251
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.03 E-value=4.9e-06 Score=68.62 Aligned_cols=31 Identities=39% Similarity=0.817 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
|++.||||+||||+|+.||+.+|. +++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~--~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF--PVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC--EEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC--eEEEecc
Confidence 789999999999999999999984 5555444
No 252
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.97 E-value=6e-05 Score=69.21 Aligned_cols=137 Identities=23% Similarity=0.242 Sum_probs=106.2
Q ss_pred ccccCCccccccccc--cccc--ccC-chhhhHHHHHHHhcc---cCCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 238 AELVPGVLFIDEVHM--LDLE--TFM-PHLETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 238 ~~~~~gvl~ide~~~--l~~~--~~~-~~~~~~~~L~~~~e~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
.+..|-++||||.+- ||+. .++ +-.|..++|+..|.. .-+.+.|.|||+ |..+.+.++|
T Consensus 207 ~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~-------------p~~LD~aiRs 273 (368)
T COG1223 207 RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR-------------PELLDPAIRS 273 (368)
T ss_pred HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC-------------hhhcCHHHHh
Confidence 346788999999774 4441 111 124568888876653 345777778775 4567788999
Q ss_pred hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 310 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVV-QLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 310 r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al-~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
|+ ..|.|.-++++|..+|+...+++.-++++.. +++++..+.+-|.|... ..|..|...|..+++..|+.+|+++++
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al 352 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKAL 352 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHH
Confidence 99 4699999999999999999999999999877 99999998555777654 466777777778899999999999998
Q ss_pred H
Q psy2778 388 T 388 (409)
Q Consensus 388 ~ 388 (409)
.
T Consensus 353 ~ 353 (368)
T COG1223 353 K 353 (368)
T ss_pred H
Confidence 6
No 253
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.96 E-value=9e-06 Score=71.38 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
++..|+|+||||||||++|++||+.++. +++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~--~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY--DFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC--CEEECh
Confidence 4678999999999999999999999985 777543
No 254
>PRK08118 topology modulation protein; Reviewed
Probab=97.93 E-value=1.9e-05 Score=69.35 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
+.|+++||||+||||+|+.|++.++. +++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~--~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI--PVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC--Cceecch
Confidence 46999999999999999999999985 7776664
No 255
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.92 E-value=8.9e-05 Score=71.28 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=97.0
Q ss_pred Ccccccccccccc-cccCchhhhHHHHHHHhcccCCc-eEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 243 GVLFIDEVHMLDL-ETFMPHLETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 243 gvl~ide~~~l~~-~~~~~~~~~~~~L~~~~e~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
.+++|++++.+.. . ..+.|.+.++++... ++++.++.... .. ........+ ++|.++.+.+++
T Consensus 48 kliii~~~~~~~~~~-------~~~~L~~~l~~~~~~~~~i~~~~~~~~---~~----~~~k~~~~~-~~~~~i~~~~~~ 112 (302)
T TIGR01128 48 RLVELRNPEGKPGAK-------GLKALEEYLANPPPDTLLLIEAPKLDK---RK----KLTKWLKAL-KNAQIVECKTPK 112 (302)
T ss_pred eEEEEECCCCCCCHH-------HHHHHHHHHhcCCCCEEEEEecCCCCH---hH----HHHHHHHHh-cCeeEEEecCCC
Confidence 5889999997653 4 678899999987554 34555432100 00 000111122 489999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
..++...+...+++.|+.++++++.+|+..+ +||++.+.+.|+....++. ...||.++|.....
T Consensus 113 ~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~-~~d~~~l~~el~KL~~~~~---~~~It~e~I~~~~~ 176 (302)
T TIGR01128 113 EQELPRWIQARLKKLGLRIDPDAVQLLAELV-EGNLLAIAQELEKLALYAP---DGKITLEDVEEAVS 176 (302)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHhhCC---CCCCCHHHHHHHHh
Confidence 9999999999999999999999999999999 9999999999999888753 23699999988876
No 256
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.92 E-value=4.3e-05 Score=84.72 Aligned_cols=98 Identities=12% Similarity=0.228 Sum_probs=58.3
Q ss_pred CCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh------------c--CCc-----cHHHHH
Q psy2778 300 PHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI------------G--TRS-----TLRYVV 360 (409)
Q Consensus 300 ~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~------------s--~~g-----~~R~al 360 (409)
-.++|..+++|+-++.+..++.+++..|++...-+ +.++..--|.+. + ..| +.|..+
T Consensus 1671 RKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~yp~----v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTL 1746 (4600)
T COG5271 1671 RKGLPKSFLNRFSVVKMDGLTTDDITHIANKMYPQ----VNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTL 1746 (4600)
T ss_pred cccCCHHHhhhhheEEecccccchHHHHHHhhCCc----cChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHH
Confidence 47999999999999999999999999988743221 223322222111 1 133 578877
Q ss_pred HHHHHHHHHHHHhC---CCCccHHHHHHHHHhccChHHHHHHHHH
Q psy2778 361 QLLTPAALTAKTNG---RTAISKQDILEVSTLFLDAKSSARILTE 402 (409)
Q Consensus 361 ~ll~~~~~~a~~~~---~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 402 (409)
.-|.....+...+. ...|+...+.++- -..|..|+|..-++
T Consensus 1747 Rwl~llNq~~~~edvd~~dfid~~V~~r~r-tv~dr~rt~~l~~e 1790 (4600)
T COG5271 1747 RWLILLNQVGTLEDVDTSDFIDESVVRRMR-TVEDRVRTCELFKE 1790 (4600)
T ss_pred HHHHHhhccCccccCCHHHHHHHHHHHHhh-hHhhhhHHHHHHHH
Confidence 77766655443221 1234443444333 34566777766554
No 257
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.87 E-value=2.5e-05 Score=69.39 Aligned_cols=38 Identities=26% Similarity=0.616 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
|+++||||+||||+|+.||+.++ +..++.+++...++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~----~~~is~~d~lr~~~~ 39 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG----FTHLSAGDLLRAEIK 39 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CeEEECChHHHHHHh
Confidence 68999999999999999999986 466777777665544
No 258
>PRK14532 adenylate kinase; Provisional
Probab=97.86 E-value=2.8e-05 Score=69.48 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=31.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEI 52 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~ 52 (409)
+|++.||||+||||+|+.||+.+| +..++..++....+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g----~~~is~~d~lr~~~ 39 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG----MVQLSTGDMLRAAI 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC----CeEEeCcHHHHHHH
Confidence 589999999999999999999987 45567777766654
No 259
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.85 E-value=2e-05 Score=69.91 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=35.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHH
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVL 58 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l 58 (409)
.|++.||||+||||+|+.||+.+ ++..++..+++...+.....+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~----~i~hlstgd~~r~~~~~~t~l 45 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL----GLPHLDTGDILRAAIAERTEL 45 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----CCcEEcHhHHhHhhhccCChH
Confidence 58999999999999999999995 688888877776665554433
No 260
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.85 E-value=4.2e-05 Score=64.85 Aligned_cols=23 Identities=43% Similarity=1.012 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~ 34 (409)
|++.||||+||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999999987
No 261
>PRK14531 adenylate kinase; Provisional
Probab=97.85 E-value=2.8e-05 Score=69.31 Aligned_cols=39 Identities=28% Similarity=0.530 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhh
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEI 52 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~ 52 (409)
+.|+++||||+||||+++.||+.+|. ..++..++....+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~----~~is~gd~lr~~~ 41 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL----RHLSTGDLLRSEV 41 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC----CeEecccHHHHHH
Confidence 57999999999999999999999874 3456666665544
No 262
>KOG1051|consensus
Probab=97.83 E-value=3.9e-05 Score=82.30 Aligned_cols=72 Identities=26% Similarity=0.347 Sum_probs=54.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCch------hhh---hhhhhhH--HHHHHHHHHHhhhhcccce
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSE------VFS---SEIKKTE--VLMENFRRAIGLRIKESKE 75 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~------l~~---~~~~~~e--~l~~~f~~a~~~~~~~~~i 75 (409)
|...+||.||.|+|||-+|+++|..+ |.+-.|+.++.++ +.+ .|+|.++ .|.+.++ ....+|
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavr------rrP~sV 663 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVK------RRPYSV 663 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHh------cCCceE
Confidence 56789999999999999999999988 5456888888875 323 3566555 3443333 345699
Q ss_pred EEeccccccc
Q psy2778 76 VYEGEVTELT 85 (409)
Q Consensus 76 i~iDEid~i~ 85 (409)
|+|||||..-
T Consensus 664 VLfdeIEkAh 673 (898)
T KOG1051|consen 664 VLFEEIEKAH 673 (898)
T ss_pred EEEechhhcC
Confidence 9999999873
No 263
>PRK07261 topology modulation protein; Provisional
Probab=97.83 E-value=4.1e-05 Score=67.53 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=31.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEI 52 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~ 52 (409)
.|+++||||+||||+|+.|++.++. +++.++.-.....+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~--~~i~~D~~~~~~~~~ 41 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC--PVLHLDTLHFQPNWQ 41 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC--CeEecCCEEeccccc
Confidence 5899999999999999999999875 777776544333333
No 264
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.83 E-value=2.2e-05 Score=71.70 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
|..+||||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 46799999999999999999973
No 265
>PRK13947 shikimate kinase; Provisional
Probab=97.81 E-value=2.2e-05 Score=69.00 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+|++.||||||||++++.||+.+++ +|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~--~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF--GFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC--CEEECc
Confidence 7999999999999999999999997 777644
No 266
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.79 E-value=5.1e-05 Score=67.08 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
++-++|+||||+||||+|+.|++.++. +++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~--~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE--PWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC--CccccCc
Confidence 467999999999999999999999874 5554444
No 267
>PRK00625 shikimate kinase; Provisional
Probab=97.79 E-value=2.4e-05 Score=69.08 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
+|+|+|+||+|||++++.+|+.+++ +|+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~--~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL--PFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--CEEEhhH
Confidence 6899999999999999999999996 8877653
No 268
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.78 E-value=0.00041 Score=68.38 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
..+|+|+.||||+|+|||+|...+...+.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCC
Confidence 34689999999999999999999998874
No 269
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.77 E-value=0.00017 Score=73.89 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
.++-++|.||||+|||+||++||+.+.. .++..+.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~-~~~Y~~kg 137 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMER-VPIYVLKA 137 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHh-CcceeecC
Confidence 4568889999999999999999999865 46666655
No 270
>KOG3347|consensus
Probab=97.76 E-value=2.5e-05 Score=65.75 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
..+||++|-||||||+++..||..++. +++.++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~--~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL--EYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC--ceEehhh
Confidence 359999999999999999999999884 6666543
No 271
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.76 E-value=8.5e-05 Score=63.91 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVG 44 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~ 44 (409)
.++++||||+|||+++..++..+.. ..+.+.++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 3689999999999999999988731 124555444
No 272
>PRK03839 putative kinase; Provisional
Probab=97.75 E-value=2.8e-05 Score=69.03 Aligned_cols=31 Identities=29% Similarity=0.658 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
.|+|.||||+||||+++.||+.++. +++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~--~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY--EYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEEehh
Confidence 4899999999999999999999985 776654
No 273
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.74 E-value=0.00024 Score=71.04 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=93.6
Q ss_pred ccCCcccccccccccccc---c---Cch-hhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLET---F---MPH-LETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~---~---~~~-~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
-.|+++||||++.+-... . -+. .+.+..|...+... ....||.+||+ +..+++.++.
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~-------------~~~ld~allR 289 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR-------------IDILDPAILR 289 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC-------------hhhCCHHHcC
Confidence 346899999999873110 0 000 11233333344322 23456667764 3456666764
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..+.+++++.++..+|++..+....+.- +..+..|++.+.+-+++..-.++..|...|..+++..|+.+|+.++
T Consensus 290 pgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A 368 (389)
T PRK03992 290 PGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKA 368 (389)
T ss_pred CccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 66 4699999999999999998876654432 2347888888856688888889999999888778889999999999
Q ss_pred HHhc
Q psy2778 387 STLF 390 (409)
Q Consensus 387 ~~~~ 390 (409)
+...
T Consensus 369 ~~~~ 372 (389)
T PRK03992 369 IEKV 372 (389)
T ss_pred HHHH
Confidence 8643
No 274
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.73 E-value=3.2e-05 Score=66.49 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+|+++||||+|||++|+.||+.+++ +++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~--~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL--PFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC--CEEEch
Confidence 4899999999999999999999986 666544
No 275
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00021 Score=65.42 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=70.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|++++.++.+ +.++|+|++|+|.. .++++.|.. +..+++.++|||+.+++...+.
T Consensus 91 KViII~~ae~mt~~-------AANALLKtLEEPP~~t~fILit~~-------------~~~LLpTIrSRCq~i~~~~p~~ 150 (263)
T PRK06581 91 KVAIIYSAELMNLN-------AANSCLKILEDAPKNSYIFLITSR-------------AASIISTIRSRCFKINVRSSIL 150 (263)
T ss_pred EEEEEechHHhCHH-------HHHHHHHhhcCCCCCeEEEEEeCC-------------hhhCchhHhhceEEEeCCCCCH
Confidence 69999999999999 99999999999977 445555532 5678889999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 365 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~ 365 (409)
.+..+....-..- -.+..-++.|.+.+ .-|.-..+...+.
T Consensus 151 ~~~~e~~~~~~~p---~~~~~~l~~i~~~~-~~d~~~w~~~~~~ 190 (263)
T PRK06581 151 HAYNELYSQFIQP---IADNKTLDFINRFT-TKDRELWLDFIDN 190 (263)
T ss_pred HHHHHHHHHhccc---ccccHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 7777766532221 12234467776665 4444444444443
No 276
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.72 E-value=1.8e-05 Score=67.15 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEeccccccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELTPV 87 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i~~~ 87 (409)
+..|||+|+|||||+++|++|....+. .-+|+.+++.++- .+.+..+ .+..+|++|+|.+...
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~l~~a------~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AELLEQA------KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHHHHHC------TTSEEEEECGCCS-HH
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHHHHHc------CCCEEEECChHHCCHH
Confidence 468999999999999999999998753 2366666665432 1223332 6789999999999553
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=7.8e-05 Score=63.76 Aligned_cols=26 Identities=35% Similarity=0.705 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
...+.++||||+||||++.-+|..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35799999999999999999998873
No 278
>PRK13949 shikimate kinase; Provisional
Probab=97.70 E-value=3.7e-05 Score=67.65 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+.|+|+||||+|||++++.||+.+++ +++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~--~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL--SFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC--Ceeccc
Confidence 47999999999999999999999986 777766
No 279
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.70 E-value=4.8e-05 Score=65.52 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=36.8
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHH
Q psy2778 14 MAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRA 65 (409)
Q Consensus 14 l~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a 65 (409)
+.||||+|||++|+.||+.++ ++.++..++...++.....+.+.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~----~~~is~~~llr~~~~~~s~~g~~i~~~ 48 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG----LVHISVGDLLREEIKSDSELGKQIQEY 48 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT----SEEEEHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC----cceechHHHHHHHHhhhhHHHHHHHHH
Confidence 589999999999999999986 678888888877775443444444444
No 280
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00058 Score=71.77 Aligned_cols=152 Identities=22% Similarity=0.208 Sum_probs=93.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCce--------------EEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPI--------------VIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~--------------~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
||.-|||.+-.+.+ ..++|..+||...-++ ++.|+|...-......+...--.+|+.|+
T Consensus 385 Gv~cIDEfdKm~~~-------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lL 457 (682)
T COG1241 385 GVCCIDEFDKMNEE-------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLL 457 (682)
T ss_pred CEEEEEeccCCChH-------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHH
Confidence 89999999988888 8999999999763222 22233332111100001111224688899
Q ss_pred hhhheee-cC-CCCHHHHHHHHHHH-----------------------------------HhhcC-CCCCHHHHHHHHHh
Q psy2778 309 DRLLIIR-TT-PYNQKDMEAIIKLR-----------------------------------ANTEG-HVLDDEALVTLSEI 350 (409)
Q Consensus 309 ~r~~~i~-~~-~~~~~e~~~il~~~-----------------------------------~~~~~-~~i~~~~l~~I~~~ 350 (409)
||+-+|. +. .++++.-..+...+ |.+.- -.+++++.+.|.+.
T Consensus 458 SRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~ 537 (682)
T COG1241 458 SRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDY 537 (682)
T ss_pred hhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHH
Confidence 9995433 22 23333222222222 12211 26788888888554
Q ss_pred -----cCC----------ccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHHHHH
Q psy2778 351 -----GTR----------STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARILT 401 (409)
Q Consensus 351 -----s~~----------g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~~~~ 401 (409)
... -++|.-..+++.+-.+|..+=+..|+.+||.+|..++...-..+-++.
T Consensus 538 Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp 603 (682)
T COG1241 538 YVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDP 603 (682)
T ss_pred HHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCc
Confidence 100 147888888888888888877889999999999998876666655553
No 281
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.69 E-value=0.0001 Score=62.68 Aligned_cols=30 Identities=33% Similarity=0.685 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
|.+.||||||||++|+.||+.++. +++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~--~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGL--PYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--ceeccc
Confidence 689999999999999999999985 887766
No 282
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.69 E-value=5.2e-05 Score=74.43 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=47.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC---Ccc-EEEecCch---------------hhhhhhhhhH-HH---HHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN---KVP-FCPMVGSE---------------VFSSEIKKTE-VL---MENFRRA 65 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~---~~~-~v~i~~~~---------------l~~~~~~~~e-~l---~~~f~~a 65 (409)
++..|++||||||||++++.|++.+.. ++. ++.+.+.. +.+......+ .+ ..++..|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999998743 222 33333321 1121111111 11 2344444
Q ss_pred Hhhh-hcccceEEeccccccccc
Q psy2778 66 IGLR-IKESKEVYEGEVTELTPV 87 (409)
Q Consensus 66 ~~~~-~~~~~ii~iDEid~i~~~ 87 (409)
...+ .....+||+||++++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHH
Confidence 4332 335679999999999765
No 283
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.69 E-value=0.00011 Score=68.63 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.+..++++||||||||++++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3678999999999999999999998864
No 284
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.69 E-value=7e-05 Score=69.14 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
..|++.||||+||||+|+.||+.++ +..++..+++...+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g----~~~is~gdllr~~~~ 46 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN----LKHINMGNILREEIK 46 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CcEEECChHHHHHhh
Confidence 5699999999999999999999987 345566666655443
No 285
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.68 E-value=0.00013 Score=68.40 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEV 47 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l 47 (409)
|+|+|+||+||||+|+.+++.++. ...++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 689999999999999999998842 135566655444
No 286
>PRK14529 adenylate kinase; Provisional
Probab=97.68 E-value=7.9e-05 Score=68.35 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=31.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
.|+|.||||+||||+++.||+.++. ..++..+++...+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~----~~is~gdllr~~i~ 40 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL----AHIESGAIFREHIG 40 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CCcccchhhhhhcc
Confidence 5899999999999999999999873 34566666665544
No 287
>PLN02674 adenylate kinase
Probab=97.68 E-value=7.1e-05 Score=69.52 Aligned_cols=52 Identities=17% Similarity=0.459 Sum_probs=39.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRR 64 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~ 64 (409)
+..++|.||||+||||+++.||+.++ +..++..+++...+.....+...++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~----~~his~GdllR~~i~~~s~~g~~i~~ 82 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAAVAAKTPLGIKAKE 82 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CcEEchhHHHHHHHhccChhhHHHHH
Confidence 46799999999999999999999986 57788888887765443333333333
No 288
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.67 E-value=3.9e-05 Score=66.86 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
.++|.|.|++|+||||+.++||+.++. +|+..+.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~--~F~D~D~ 35 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNL--PFIDTDQ 35 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCC--CcccchH
Confidence 368999999999999999999999996 8887664
No 289
>PRK06762 hypothetical protein; Provisional
Probab=97.66 E-value=0.0001 Score=64.46 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
|.-++++|+||+||||+|+.|++.++. .++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~--~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR--GTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC--CeEEecHHHHH
Confidence 367899999999999999999999964 45555654444
No 290
>PLN02200 adenylate kinase family protein
Probab=97.66 E-value=9.8e-05 Score=68.48 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=33.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
|..+++.||||+||||+|+.||+.+| +..++.+++...++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g----~~his~gdllR~~i~ 83 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG----FKHLSAGDLLRREIA 83 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC----CeEEEccHHHHHHHh
Confidence 46788999999999999999999987 356888888765543
No 291
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.66 E-value=8.7e-05 Score=66.42 Aligned_cols=37 Identities=32% Similarity=0.594 Sum_probs=29.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEI 52 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~ 52 (409)
|+++||||+|||++|+.||+.++. ..++..++.....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~----~~i~~~~l~~~~~ 38 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL----PHISTGDLLREEI 38 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC----eEEECcHHHHHHH
Confidence 799999999999999999999863 4466666655443
No 292
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.66 E-value=0.0004 Score=69.39 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=96.5
Q ss_pred ccCCccccccccccccccc-----C-ch-hhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLETF-----M-PH-LETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~-----~-~~-~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
-.|.++||||++.+-.... . .. .+.+..|...++.. ...++|++||+ +..+++.++.
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~-------------~d~LDpAllR 303 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR-------------ADTLDPALLR 303 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC-------------chhCCHHHcC
Confidence 3578999999987632100 0 01 12233444445432 23457777764 4566777765
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..|.+++++.++..+|++....+.++.- +-.+..+++.+.+-+++..-+++..|...|..+++..|+.+|+.++
T Consensus 304 ~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A 382 (398)
T PTZ00454 304 PGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKG 382 (398)
T ss_pred CCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 66 4589999999999999998887766542 3346788888867789999999999999998888889999999999
Q ss_pred HHh
Q psy2778 387 STL 389 (409)
Q Consensus 387 ~~~ 389 (409)
+.-
T Consensus 383 ~~~ 385 (398)
T PTZ00454 383 YKT 385 (398)
T ss_pred HHH
Confidence 863
No 293
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.66 E-value=0.00046 Score=71.32 Aligned_cols=136 Identities=26% Similarity=0.287 Sum_probs=96.0
Q ss_pred cCCcccccccccccccc---cCc----hhhhHHHHHHHhcccC---CceEEEecCcceeeecccccCCCCCCCchhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLET---FMP----HLETFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 309 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~---~~~----~~~~~~~L~~~~e~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 309 (409)
.|.++||||+|.+.... +.. ....++.|+..|+... ..+||.+||+ |..+.+.+++
T Consensus 147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~-------------~~~ld~al~r~ 213 (495)
T TIGR01241 147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR-------------PDVLDPALLRP 213 (495)
T ss_pred CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC-------------hhhcCHHHhcC
Confidence 46899999999875421 000 1234455666665332 2456666664 4566777775
Q ss_pred -hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 310 -RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 310 -r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
|+ ..+.++.++.++..+|++......... ++..+..+++.+.+-+++..-+++..|...|..++...|+.+++..++
T Consensus 214 gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~ 292 (495)
T TIGR01241 214 GRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAI 292 (495)
T ss_pred CcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 55 468899999999999999887765554 345578899998455788888888888777776777889999999988
Q ss_pred Hhc
Q psy2778 388 TLF 390 (409)
Q Consensus 388 ~~~ 390 (409)
...
T Consensus 293 ~~~ 295 (495)
T TIGR01241 293 DRV 295 (495)
T ss_pred HHH
Confidence 744
No 294
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.65 E-value=8.7e-05 Score=67.04 Aligned_cols=69 Identities=19% Similarity=0.362 Sum_probs=42.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCC--ccEEEecCc-hhh---------hhhhhhhH-HHHHHHHHHHhhhhcccceE
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNK--VPFCPMVGS-EVF---------SSEIKKTE-VLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~--~~~v~i~~~-~l~---------~~~~~~~e-~l~~~f~~a~~~~~~~~~ii 76 (409)
.-+++.||+|+||||++++++..+... ..++.+... ++. ...++... .+.+.++.+.. ..|.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr---~~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALR---QDPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhc---CCcCEE
Confidence 458899999999999999999888521 122222211 111 11222222 34455555542 479999
Q ss_pred Eeccc
Q psy2778 77 YEGEV 81 (409)
Q Consensus 77 ~iDEi 81 (409)
++||+
T Consensus 79 i~gEi 83 (198)
T cd01131 79 LVGEM 83 (198)
T ss_pred EEcCC
Confidence 99997
No 295
>PRK13948 shikimate kinase; Provisional
Probab=97.64 E-value=6.3e-05 Score=66.91 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
++..|+|.|+||||||++++.+|+.+++ +|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~--~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML--HFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC--CEEECC
Confidence 4689999999999999999999999997 888666
No 296
>CHL00176 ftsH cell division protein; Validated
Probab=97.64 E-value=0.00063 Score=71.87 Aligned_cols=137 Identities=21% Similarity=0.209 Sum_probs=95.2
Q ss_pred ccCCcccccccccccccc------cCc-hhhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLET------FMP-HLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~------~~~-~~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
-.|.++||||+|.+.... -.+ ..+.++.|+..|+.. ...++|.+||+ +..+.+.++.
T Consensus 274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~-------------~~~LD~ALlR 340 (638)
T CHL00176 274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR-------------VDILDAALLR 340 (638)
T ss_pred CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc-------------hHhhhhhhhc
Confidence 456799999999874210 000 122344455555432 23567777764 3344555664
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..+.+.+++.++..+|++..+++..+ .++..+..|++.+.+.+.+..-+++..|...|..++...|+.+++..+
T Consensus 341 pGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~A 419 (638)
T CHL00176 341 PGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTA 419 (638)
T ss_pred cccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 44 46889999999999999988877433 346678999999844588888899998888777778888999999998
Q ss_pred HHhc
Q psy2778 387 STLF 390 (409)
Q Consensus 387 ~~~~ 390 (409)
..-.
T Consensus 420 i~rv 423 (638)
T CHL00176 420 IDRV 423 (638)
T ss_pred HHHH
Confidence 8643
No 297
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.62 E-value=0.00053 Score=67.99 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=90.7
Q ss_pred cCCccccccccccccccc------Cc-hhhhHHHHHHHhccc--C-CceEEEecCcceeeecccccCCCCCCCchhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETF------MP-HLETFTYLHRALESA--I-APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 309 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~------~~-~~~~~~~L~~~~e~~--~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 309 (409)
.|+++|+||++.+-.... -+ ....+..|...++.. . ...||.+||+ +..+++.++.
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~-------------~~~ld~al~r~ 281 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR-------------PDILDPALLRP 281 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC-------------hhhCChhhcCc
Confidence 567999999998732100 00 122333444444432 2 3446666653 3456666663
Q ss_pred -hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 310 -RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 310 -r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
|+ ..+.+++++.++..+|++..+....+.- +..+..+++.+.+-+++..-+++..|...|..+++..|+.+|+.+++
T Consensus 282 grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~ 360 (364)
T TIGR01242 282 GRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAV 360 (364)
T ss_pred ccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 44 3688999999999999997776544321 22478888888555778888889999988888888999999999987
Q ss_pred H
Q psy2778 388 T 388 (409)
Q Consensus 388 ~ 388 (409)
.
T Consensus 361 ~ 361 (364)
T TIGR01242 361 E 361 (364)
T ss_pred H
Confidence 5
No 298
>PRK14530 adenylate kinase; Provisional
Probab=97.61 E-value=6.8e-05 Score=68.64 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~ 49 (409)
+..|+|.||||+||||+++.||+.++. +++ +..++.-
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~--~~i--~~g~~lr 39 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGV--EHV--TTGDALR 39 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC--eEE--eccHHHH
Confidence 357999999999999999999999974 444 4444443
No 299
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.61 E-value=8.6e-05 Score=67.70 Aligned_cols=38 Identities=29% Similarity=0.630 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
|+++||||+||||+|+.||+.+| +..++..++....+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g----~~~is~gdllr~~~~ 39 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG----LPHISTGDLLRAEIK 39 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CCeeehhHHHHHhhc
Confidence 78999999999999999999986 455666666655443
No 300
>PLN02459 probable adenylate kinase
Probab=97.59 E-value=0.00014 Score=68.10 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=39.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAI 66 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~ 66 (409)
..++|.||||+||||+++.||+.++ +..++..+++...+.....+.+.++...
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~ei~~~t~lg~~i~~~~ 82 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG----VPHIATGDLVREEIKSSGPLGAQLKEIV 82 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC----CcEEeCcHHHHHHHhccchhHHHHHHHH
Confidence 4689999999999999999999986 5778888887766654434444444433
No 301
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00048 Score=66.21 Aligned_cols=148 Identities=23% Similarity=0.309 Sum_probs=102.8
Q ss_pred HHHHHHhhccccccCCcccccccccccccccCc---h-hhhHHHHH---HHhcccCC----ceEEEecCcceeeeccccc
Q psy2778 228 VVNKYIDQGIAELVPGVLFIDEVHMLDLETFMP---H-LETFTYLH---RALESAIA----PIVIFATNRGRCLVRGTDD 296 (409)
Q Consensus 228 ~~~~~~~~~~~~~~~gvl~ide~~~l~~~~~~~---~-~~~~~~L~---~~~e~~~~----~~~i~~~~~~~~~~~~~~~ 296 (409)
.+.+.+.-++ +-.|.++||||++..--.-+-. . -|.+..+. .+|.. |+ .-||.|||+. +
T Consensus 232 lVRelF~lAr-ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG-FD~~~nvKVI~ATNR~--------D 301 (406)
T COG1222 232 LVRELFELAR-EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG-FDPRGNVKVIMATNRP--------D 301 (406)
T ss_pred HHHHHHHHHh-hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC-CCCCCCeEEEEecCCc--------c
Confidence 4444444333 3467899999988553211110 0 11344444 44442 33 4599999996 3
Q ss_pred CCCCCCCchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCC
Q psy2778 297 IISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT 376 (409)
Q Consensus 297 ~~~~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~ 376 (409)
...|.-+-+.-++| .|.|+.++.+.-.+|++.++.+.++. ++--++.|++...+.|.-.--+++.-|..+|..+.+.
T Consensus 302 ~LDPALLRPGR~DR--kIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 302 ILDPALLRPGRFDR--KIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred ccChhhcCCCcccc--eeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 44566666666666 46777899999999999999987662 2334788899986667778888899999999988999
Q ss_pred CccHHHHHHHHH
Q psy2778 377 AISKQDILEVST 388 (409)
Q Consensus 377 ~I~~~~v~~~~~ 388 (409)
.||.+|..++..
T Consensus 379 ~Vt~~DF~~Av~ 390 (406)
T COG1222 379 EVTMEDFLKAVE 390 (406)
T ss_pred eecHHHHHHHHH
Confidence 999999999886
No 302
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.59 E-value=0.00026 Score=64.35 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCch
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSE 46 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~ 46 (409)
-|..++.-++++||||||||+++..+|... ......+.++..+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 356667889999999999999999988765 1112566666644
No 303
>PRK14527 adenylate kinase; Provisional
Probab=97.56 E-value=0.00012 Score=65.74 Aligned_cols=40 Identities=25% Similarity=0.588 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEI 52 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~ 52 (409)
+.-++++||||+||||+|+.||+.++. ..++..++.....
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~----~~is~gd~~r~~~ 45 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGL----KKLSTGDILRDHV 45 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC----CCCCccHHHHHHH
Confidence 467999999999999999999999873 4555566654443
No 304
>PRK06217 hypothetical protein; Validated
Probab=97.56 E-value=8.3e-05 Score=66.27 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
..|++.|+||+||||+|++|++.++. +++.++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~--~~~~~D~ 34 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI--PHLDTDD 34 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC--cEEEcCc
Confidence 36999999999999999999999985 7776554
No 305
>PRK13808 adenylate kinase; Provisional
Probab=97.56 E-value=0.00016 Score=70.02 Aligned_cols=39 Identities=21% Similarity=0.567 Sum_probs=32.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
.|+|+||||+|||++++.||+.++ +..++..+++...+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg----l~~is~gdlLR~~i~ 40 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG----IVQLSTGDMLRAAVA 40 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CceecccHHHHHHhh
Confidence 589999999999999999999986 467777777765543
No 306
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.56 E-value=0.00014 Score=66.49 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=30.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
.|+++||||+|||++|+.||+.+++ ..++..++....+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~----~~is~~dl~r~~~~ 40 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI----PHISTGDMLRAAVK 40 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC----cEEECCccHHHHHh
Confidence 4899999999999999999999873 45556566554443
No 307
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.56 E-value=4.5e-05 Score=68.56 Aligned_cols=26 Identities=46% Similarity=0.804 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.|+||+||||||||++|+++..-+.
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 46999999999999999999998775
No 308
>PRK14526 adenylate kinase; Provisional
Probab=97.55 E-value=0.00012 Score=66.85 Aligned_cols=39 Identities=33% Similarity=0.685 Sum_probs=30.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIK 53 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~ 53 (409)
.++|+||||+||||+++.||+.++ +..++..+++...+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~----~~~is~G~llr~~~~ 40 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN----YYHISTGDLFRENIL 40 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CceeecChHHHHhcc
Confidence 589999999999999999999986 345667676655443
No 309
>PRK14528 adenylate kinase; Provisional
Probab=97.54 E-value=6.2e-05 Score=67.33 Aligned_cols=37 Identities=27% Similarity=0.585 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhh
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSS 50 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~ 50 (409)
+.+++.||||+|||++++.||+.++. +. ++..++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~--~~--is~~~~lr~ 38 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSI--PQ--ISTGDILRE 38 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC--Ce--eeCCHHHHH
Confidence 46899999999999999999999874 44 445555543
No 310
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.54 E-value=0.00025 Score=62.99 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy2778 12 ILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l 33 (409)
+|++||||||||+++..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999887764
No 311
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.54 E-value=5.6e-05 Score=61.18 Aligned_cols=23 Identities=39% Similarity=0.771 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~ 34 (409)
|.|+||||+|||++|..||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998885
No 312
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.54 E-value=8.1e-05 Score=63.85 Aligned_cols=24 Identities=33% Similarity=0.706 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++|+||||+||||+|+.+++.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 689999999999999999999874
No 313
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.53 E-value=0.0068 Score=57.32 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=45.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhh-hHHHHHHHHHHHhhhhcccceEEeccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKK-TEVLMENFRRAIGLRIKESKEVYEGEV 81 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~-~e~l~~~f~~a~~~~~~~~~ii~iDEi 81 (409)
.|++|+||.|++|+||+++++-.|.-.+. .++.+..+.-++ ..+ .+.|++++.+|.. ..+|.++++.|-
T Consensus 29 ~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~--~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~--~~~~~vfll~d~ 98 (268)
T PF12780_consen 29 QPRGHALLVGVGGSGRQSLARLAAFICGY--EVFQIEITKGYS--IKDFKEDLKKALQKAGI--KGKPTVFLLTDS 98 (268)
T ss_dssp STTEEEEEECTTTSCHHHHHHHHHHHTTE--EEE-TTTSTTTH--HHHHHHHHHHHHHHHHC--S-S-EEEEEECC
T ss_pred CCCCCeEEecCCCccHHHHHHHHHHHhcc--ceEEEEeeCCcC--HHHHHHHHHHHHHHHhc--cCCCeEEEecCc
Confidence 46789999999999999999988877764 777777543222 122 2356777777642 346777777653
No 314
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.51 E-value=8.6e-05 Score=64.67 Aligned_cols=27 Identities=41% Similarity=0.773 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEE
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFC 40 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v 40 (409)
|++.|||||||||+|+.|++.++. +++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~--~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA--KFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC--eEE
Confidence 578999999999999999999974 554
No 315
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.50 E-value=0.0004 Score=64.33 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=26.3
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
.-|..++..++++||||||||+++..++.+.
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3466778889999999999999999997653
No 316
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.50 E-value=9.2e-05 Score=64.10 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
.|+++|.|||||||+++.|+ ++|. +.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~--~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY--KVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC--ceeeHH
Confidence 58999999999999999999 8886 666655
No 317
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.49 E-value=0.00018 Score=70.68 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=45.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC--CccEEEecCc-hh---------hhhhhhhhH-HHHHHHHHHHhhhhcccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN--KVPFCPMVGS-EV---------FSSEIKKTE-VLMENFRRAIGLRIKESK 74 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~--~~~~v~i~~~-~l---------~~~~~~~~e-~l~~~f~~a~~~~~~~~~ 74 (409)
++..+|++||+|+||||+.+++...+.. ...++.+..+ ++ ....++... .+.+.++.+. ...|.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~l---r~~pd 197 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAAL---REDPD 197 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhh---ccCCC
Confidence 3467899999999999999999988753 1233333221 11 112223222 3445555554 25899
Q ss_pred eEEecccc
Q psy2778 75 EVYEGEVT 82 (409)
Q Consensus 75 ii~iDEid 82 (409)
+|++||+-
T Consensus 198 ~i~vgEir 205 (343)
T TIGR01420 198 VILIGEMR 205 (343)
T ss_pred EEEEeCCC
Confidence 99999984
No 318
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.49 E-value=0.00014 Score=64.18 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
++.|+|.||||+|||++++.+|+.++. +++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~--~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM--EFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCC--cEEECCc
Confidence 468999999999999999999999985 7777664
No 319
>PRK13946 shikimate kinase; Provisional
Probab=97.48 E-value=0.00011 Score=65.48 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
.++.|+|.|+||||||++++.||+.+|+ +|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~--~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGL--PFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC--CeECcC
Confidence 3578999999999999999999999996 777655
No 320
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.47 E-value=0.0003 Score=67.64 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
.-+++.|||||||||+|+.|++.+. .+..++..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~---~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP---KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC---CCEEEeccHH
Confidence 5688999999999999999999983 2344555444
No 321
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.47 E-value=0.00027 Score=65.27 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEeccccccc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELT 85 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i~ 85 (409)
.+-.++||+|||||.+++.+|+.+|. +++.+++++-.+. ..+.++|.-+. ...+-+.+||++.+.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~--~~~vfnc~~~~~~-----~~l~ril~G~~----~~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGR--FVVVFNCSEQMDY-----QSLSRILKGLA----QSGAWLCFDEFNRLS 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT----EEEEETTSSS-H-----HHHHHHHHHHH----HHT-EEEEETCCCSS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCC--eEEEecccccccH-----HHHHHHHHHHh----hcCchhhhhhhhhhh
Confidence 56678999999999999999999997 8899998774422 23456666554 357889999999983
No 322
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.47 E-value=0.00025 Score=70.02 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+++.++++||||||||++++.+++.+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4567999999999999999999998643
No 323
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.47 E-value=0.00013 Score=63.99 Aligned_cols=32 Identities=28% Similarity=0.620 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
..++|+|+||||||++++.||+.+|+ +|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~--~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGY--RFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC--CEEEcc
Confidence 46899999999999999999999996 777554
No 324
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.46 E-value=0.00075 Score=68.12 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=92.2
Q ss_pred cCCccccccccccccccc--Cc-----hhhhHHHHHHHhcc---cCCceEEEecCcceeeecccccCCCCCCCchhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETF--MP-----HLETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 309 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~--~~-----~~~~~~~L~~~~e~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 309 (409)
.|.++||||++.+-.... .. ..+.+..|...++. .....||.+||+ +..+++.++.
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr-------------~d~LDpaLlRp 342 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR-------------IESLDPALIRP 342 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC-------------hHHhhHHhccC
Confidence 578999999987632100 00 01223334444432 234567788875 3455556653
Q ss_pred -hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 310 -RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 310 -r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
|+ ..|.|++++.++..+|++....+..+.- +..++.++..+.+.+++..-+++..|...|..+++..|+.+|+.++.
T Consensus 343 GRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 343 GRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAK 421 (438)
T ss_pred CeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 55 4689999999999999998877654421 22367777777566888888889999999988888999999999988
Q ss_pred H
Q psy2778 388 T 388 (409)
Q Consensus 388 ~ 388 (409)
.
T Consensus 422 ~ 422 (438)
T PTZ00361 422 E 422 (438)
T ss_pred H
Confidence 6
No 325
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.46 E-value=0.00057 Score=70.21 Aligned_cols=115 Identities=27% Similarity=0.374 Sum_probs=83.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ce----------EEEecCcceeeecccccCCCCCCCchhhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PI----------VIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 311 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 311 (409)
|.+|.||+.-++.. .++.|++.+++..- |+ ||-+|++...- ...--.+-++|+=|+
T Consensus 409 GtlFldeIgd~p~~-------~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~------lv~~g~fredLyyrL 475 (606)
T COG3284 409 GTLFLDEIGDMPLA-------LQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQ------LVEQGRFREDLYYRL 475 (606)
T ss_pred CccHHHHhhhchHH-------HHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHH------HHHcCCchHHHHHHh
Confidence 79999999999888 99999999987522 32 77777765331 112234566777777
Q ss_pred --heeecCCCCH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 312 --LIIRTTPYNQ-----KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 312 --~~i~~~~~~~-----~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
++|+++|+-+ .-+..+++... ...+.++++++..+.....-|+.|.-.|.++.++..+.
T Consensus 476 ~~~~i~lP~lr~R~d~~~~l~~~~~~~~-~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 476 NAFVITLPPLRERSDRIPLLDRILKREN-DWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred cCeeeccCchhcccccHHHHHHHHHHcc-CCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 5677777654 22333333222 25689999999999999999999999999999988764
No 326
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.46 E-value=0.00028 Score=71.65 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcC-CCccEEEecCchhhhhhhhhhH---------------HHHHHHHHHHhh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELG-NKVPFCPMVGSEVFSSEIKKTE---------------VLMENFRRAIGL 68 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~~l~~~~~~~~e---------------~l~~~f~~a~~~ 68 (409)
|..++.-+|++||||+|||+++..+|.... ...+.+++++.+-........+ .+.++++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i--- 152 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI--- 152 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH---
Confidence 566777889999999999999999988762 1136677776543322111111 123333333
Q ss_pred hhcccceEEeccccccccc
Q psy2778 69 RIKESKEVYEGEVTELTPV 87 (409)
Q Consensus 69 ~~~~~~ii~iDEid~i~~~ 87 (409)
....|.+|++|++..+...
T Consensus 153 ~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HhhCCCEEEEechhhhccc
Confidence 2357899999999988654
No 327
>PHA02624 large T antigen; Provisional
Probab=97.46 E-value=0.00014 Score=74.77 Aligned_cols=66 Identities=20% Similarity=0.103 Sum_probs=45.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh-hhhhhhHHHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS-SEIKKTEVLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~-~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
+|....+.+||+||||||||+++.+|++.++. ..+.+|++.-.+ -|.+ . .....++++|++-
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G--~vlsVNsPt~ks~FwL~------------p---l~D~~~~l~dD~t 488 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGG--KSLNVNCPPDKLNFELG------------C---AIDQFMVVFEDVK 488 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCC--eEEEeeCCcchhHHHhh------------h---hhhceEEEeeecc
Confidence 34555678999999999999999999999955 466677543221 2222 1 1234678888886
Q ss_pred cccc
Q psy2778 83 ELTP 86 (409)
Q Consensus 83 ~i~~ 86 (409)
.-+.
T Consensus 489 ~~~~ 492 (647)
T PHA02624 489 GQPA 492 (647)
T ss_pred cccc
Confidence 5544
No 328
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.45 E-value=0.00028 Score=63.66 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=41.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhh-----HHHHHHHHHHHhhh------hcccceEE
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKT-----EVLMENFRRAIGLR------IKESKEVY 77 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~-----e~l~~~f~~a~~~~------~~~~~ii~ 77 (409)
+-.++.||||||||++.+.+++.+.. ...++.+..+.-......+. ..+...+....... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 46788999999999999998877622 13566555543322222221 11222221111100 12347999
Q ss_pred eccccccc
Q psy2778 78 EGEVTELT 85 (409)
Q Consensus 78 iDEid~i~ 85 (409)
+||+-.+.
T Consensus 99 VDEasmv~ 106 (196)
T PF13604_consen 99 VDEASMVD 106 (196)
T ss_dssp ESSGGG-B
T ss_pred EecccccC
Confidence 99998873
No 329
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.45 E-value=0.00017 Score=64.17 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~ 49 (409)
-+++.||||+||||+++.||+.+|. ..++.+++.-
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~----~~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGF----THLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC----cEEeHHHHHH
Confidence 6889999999999999999999874 3455545443
No 330
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.00058 Score=68.40 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=46.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
-++++||.+||||++++.+.+.+.. .++.++.-|+...+..-.+.+ ..+..+. ..+...+|+|||...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~--~~iy~~~~d~~~~~~~l~d~~-~~~~~~~---~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE--EIIYINFDDLRLDRIELLDLL-RAYIELK---EREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc--ceEEEEecchhcchhhHHHHH-HHHHHhh---ccCCceEEEecccCc
Confidence 7899999999999999999988764 367777766655444322211 2222222 115579999999987
No 331
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.43 E-value=0.0014 Score=62.33 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.8
Q ss_pred hheeecCCCCHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHhcCCccHHHHHHHH
Q psy2778 311 LLIIRTTPYNQKDMEAIIKLRANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLL 363 (409)
Q Consensus 311 ~~~i~~~~~~~~e~~~il~~~~~~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll 363 (409)
...+.+++++.+|-.+++...+-... -+-.++....|++.+ +|.| .|+.++
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glP-Lal~~~ 202 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKC-GGLP-LALKLI 202 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHT-TT-H-HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccc-cccccc
Confidence 56799999999999999998765443 223356678888988 7766 566555
No 332
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.42 E-value=0.00063 Score=62.26 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=30.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcC-CCccEEEecCc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELG-NKVPFCPMVGS 45 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~ 45 (409)
|..++.-++++||||||||+++..+|.+.. ..-+.+.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 566667789999999999999999997762 11255556543
No 333
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00014 Score=62.30 Aligned_cols=33 Identities=33% Similarity=0.668 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
|-+.|||||||||.|+.||+.+|. +++ ++..+|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl--~~v--saG~iF 35 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL--KLV--SAGTIF 35 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC--cee--eccHHH
Confidence 568999999999999999999985 444 444444
No 334
>PF13245 AAA_19: Part of AAA domain
Probab=97.41 E-value=0.00036 Score=52.74 Aligned_cols=24 Identities=42% Similarity=0.757 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKT-AIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT-~la~alA~~l 33 (409)
+-+++.|||||||| +++..++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556999999999 4555555554
No 335
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.41 E-value=0.00072 Score=69.98 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=26.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
..++.++|+.||+|||||++.||||.-..+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 356789999999999999999999987754
No 336
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.40 E-value=0.00038 Score=68.87 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=51.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCC-ccEEEecCchhhhhhh------hh--------hH-HHHHHHHHHHhh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNK-VPFCPMVGSEVFSSEI------KK--------TE-VLMENFRRAIGL 68 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~-~~~v~i~~~~l~~~~~------~~--------~e-~l~~~f~~a~~~ 68 (409)
|..++.-+|++||||+|||+++..+|..+... -+.+++++.+-..... +. .+ .+.++++..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i--- 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI--- 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH---
Confidence 56667788999999999999999998776221 2666776644222111 10 01 223333333
Q ss_pred hhcccceEEeccccccccc
Q psy2778 69 RIKESKEVYEGEVTELTPV 87 (409)
Q Consensus 69 ~~~~~~ii~iDEid~i~~~ 87 (409)
....|.+|+||++..+...
T Consensus 155 ~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HhcCCcEEEEcchHHhhcc
Confidence 2357999999999998543
No 337
>PRK06547 hypothetical protein; Provisional
Probab=97.40 E-value=0.00018 Score=63.39 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.++.-|++.||||||||++|+.|++.++. +++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~--~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGF--QLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC--Ceecc
Confidence 34567889999999999999999999874 55544
No 338
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.39 E-value=0.00061 Score=58.57 Aligned_cols=34 Identities=38% Similarity=0.688 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEV 47 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l 47 (409)
++++|+||+|||++|+.|+..+ +. ..+.+++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~--~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGR--PVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC--CEEEEcCHHH
Confidence 6899999999999999999998 43 4555665443
No 339
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.39 E-value=0.00013 Score=60.43 Aligned_cols=22 Identities=45% Similarity=0.739 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy2778 12 ILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l 33 (409)
|+|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 340
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.39 E-value=0.00066 Score=56.14 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC---CccEEEecCch
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN---KVPFCPMVGSE 46 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~---~~~~v~i~~~~ 46 (409)
++++++||||+|||+.+..++..+.. .-..+.+.+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~ 40 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTR 40 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcH
Confidence 47899999999999998888877742 12555555543
No 341
>PRK13764 ATPase; Provisional
Probab=97.38 E-value=0.00025 Score=73.88 Aligned_cols=27 Identities=37% Similarity=0.682 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++++|++||||+||||++++++..+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999998853
No 342
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.38 E-value=0.00029 Score=68.24 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=45.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC---CCccEEEec-Cchhhhhh-------hhhhHHHHHHHHHHHhhhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG---NKVPFCPMV-GSEVFSSE-------IKKTEVLMENFRRAIGLRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~---~~~~~v~i~-~~~l~~~~-------~~~~e~l~~~f~~a~~~~~~~~~ii~ 77 (409)
+.++|++||+|+||||++++|+..+. ....++.+. ..++.... ....-.+.++++.+.. ..|..|+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR---~~PD~Ii 220 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMR---LRPDRII 220 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhC---CCCCEEE
Confidence 56899999999999999999999872 112334333 22222110 0111134566666653 5899999
Q ss_pred eccccc
Q psy2778 78 EGEVTE 83 (409)
Q Consensus 78 iDEid~ 83 (409)
++|+-.
T Consensus 221 vGEiRg 226 (323)
T PRK13833 221 VGEVRD 226 (323)
T ss_pred EeecCC
Confidence 999853
No 343
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.38 E-value=0.0036 Score=60.69 Aligned_cols=36 Identities=31% Similarity=0.590 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
..+-++|.||+|+|||++++.|-+.+.. .++..+.+
T Consensus 87 ~krIl~L~GPvg~GKSsl~~~Lk~~le~-y~~Y~l~~ 122 (358)
T PF08298_consen 87 RKRILLLLGPVGGGKSSLAELLKRGLEE-YPIYTLKG 122 (358)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhhe-EEEEEecC
Confidence 3467889999999999999999998864 35555543
No 344
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.37 E-value=0.00043 Score=61.86 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc-hhhhh---hh----------hhhH-HHHHHHHHHHhhhhcc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS-EVFSS---EI----------KKTE-VLMENFRRAIGLRIKE 72 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~-~l~~~---~~----------~~~e-~l~~~f~~a~~~~~~~ 72 (409)
++..+++.||+|+||||+.++++..+..+...+.+... ++... ++ +... ...+.++.+.. ..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR---~~ 100 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALR---MR 100 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhc---cC
Confidence 45789999999999999999999987543344433332 11110 00 0011 23445554442 46
Q ss_pred cceEEeccccc
Q psy2778 73 SKEVYEGEVTE 83 (409)
Q Consensus 73 ~~ii~iDEid~ 83 (409)
|..++++|+-.
T Consensus 101 pd~i~igEir~ 111 (186)
T cd01130 101 PDRIIVGEVRG 111 (186)
T ss_pred CCEEEEEccCc
Confidence 99999999853
No 345
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.00033 Score=63.43 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=42.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCC------ccEEEecC-chhhhhhhhh-----hHH---H-----HHHHHHHHhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNK------VPFCPMVG-SEVFSSEIKK-----TEV---L-----MENFRRAIGLRI 70 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~------~~~v~i~~-~~l~~~~~~~-----~e~---l-----~~~f~~a~~~~~ 70 (409)
+.|+.|||||||||+.+-||+-+... ..+..++- +++.+...|- ..+ + .+.+-. .++.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmm--aIrs 216 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMM--AIRS 216 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHH--HHHh
Confidence 78999999999999999999877321 12333332 2333311111 001 1 112222 2356
Q ss_pred cccceEEecccccc
Q psy2778 71 KESKEVYEGEVTEL 84 (409)
Q Consensus 71 ~~~~ii~iDEid~i 84 (409)
..|.++++|||..-
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 79999999998764
No 346
>PRK02496 adk adenylate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=64.12 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.++++||||+|||++++.||+.++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999999874
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.36 E-value=0.00087 Score=62.01 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=27.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecC
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVG 44 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~ 44 (409)
|..++.-++++||||||||+++..++..+ ......+.++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45567789999999999999986665544 22224555543
No 348
>PRK04296 thymidine kinase; Provisional
Probab=97.36 E-value=0.00033 Score=62.83 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
.-.+++||||+|||+++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 457899999999999998888776
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.35 E-value=0.00038 Score=67.87 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC-chhhh-h------------hhhhhH-HHHHHHHHHHhhhhcc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG-SEVFS-S------------EIKKTE-VLMENFRRAIGLRIKE 72 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~-~~l~~-~------------~~~~~e-~l~~~f~~a~~~~~~~ 72 (409)
.++++|++||+|+||||+.+++...+..+..++.+-. .++.- . ..+... .+.++++.+.. ..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR---~~ 235 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLR---LR 235 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhc---cC
Confidence 3679999999999999999999999875444444322 12221 0 011122 34566766653 57
Q ss_pred cceEEeccccc
Q psy2778 73 SKEVYEGEVTE 83 (409)
Q Consensus 73 ~~ii~iDEid~ 83 (409)
|..|+++|+-.
T Consensus 236 PD~IivGEiR~ 246 (332)
T PRK13900 236 PDRIIVGELRG 246 (332)
T ss_pred CCeEEEEecCC
Confidence 99999999864
No 350
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.35 E-value=0.0018 Score=63.34 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=70.1
Q ss_pred hhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q psy2778 306 DLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 385 (409)
Q Consensus 306 ~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~ 385 (409)
.+.+++.++.+.+++..++...++..+++.|+.++++++++|++.+ ++|++.+.+-++-...++. + ..||.++|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~El~KL~l~~~--~-~~It~~~I~~ 208 (340)
T PRK05574 133 ALKKKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERV-EGNLLALAQELEKLALLYP--D-GKITLEDVEE 208 (340)
T ss_pred HHHhCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CchHHHHHHHHHHHHhhcC--C-CCCCHHHHHH
Confidence 4566788999999999999999999999999999999999999999 8999999999998887753 2 2399999987
Q ss_pred HHHh
Q psy2778 386 VSTL 389 (409)
Q Consensus 386 ~~~~ 389 (409)
+.+.
T Consensus 209 ~i~~ 212 (340)
T PRK05574 209 AVPD 212 (340)
T ss_pred HHhh
Confidence 7654
No 351
>PRK04040 adenylate kinase; Provisional
Probab=97.34 E-value=0.00023 Score=63.75 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-++++|+|||||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999999994
No 352
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.34 E-value=0.00019 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy2778 12 ILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l 33 (409)
+.+.||||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999996
No 353
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00017 Score=64.10 Aligned_cols=25 Identities=40% Similarity=0.723 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
=++|+|+||+|||++|+.||+++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4789999999999999999999954
No 354
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.33 E-value=0.0028 Score=64.97 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=98.9
Q ss_pred ccCCcccccccccccc--cccCc---hhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhh--hh-
Q psy2778 240 LVPGVLFIDEVHMLDL--ETFMP---HLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL- 311 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~--~~~~~---~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--r~- 311 (409)
..|.|+||||++.+-. ...-. ..+.+..+...|....+++++++|. |.+..+|++++. |+
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT------------N~~~~Ld~allR~GRFD 384 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA------------NNIDLLPLEILRKGRFD 384 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec------------CChhhCCHHHhCCCcCC
Confidence 4688999999986532 10001 1234556666777777777666652 236788888875 77
Q ss_pred heeecCCCCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 312 LIIRTTPYNQKDMEAIIKLRANTEGHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~~~~~~~~~-i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
.++.+..++.++-.+|++...++.+.. .++..++.+++.+.+-+.+.--+++..|...|..++ ..++.+|+..+..-+
T Consensus 385 ~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 385 EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALKQF 463 (489)
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhc
Confidence 468899999999999999888775432 345668999999967788888888888877776544 568999998887644
No 355
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.31 E-value=0.00029 Score=66.72 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCC-ccEEEecC-chhhhhhhh-------hhH-HHHHHHHHHHhhhhcccceEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNK-VPFCPMVG-SEVFSSEIK-------KTE-VLMENFRRAIGLRIKESKEVYE 78 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~-~~~v~i~~-~~l~~~~~~-------~~e-~l~~~f~~a~~~~~~~~~ii~i 78 (409)
.+++|+.||+|+||||+.+++...+... ..++.+.. .++...... ... .+.+.++.+.. ..|.+|++
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR---~~pD~iii 203 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALR---QDPDVIII 203 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTT---S--SEEEE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhc---CCCCcccc
Confidence 5799999999999999999999999654 44454443 222211111 112 45666776653 57999999
Q ss_pred cccccc
Q psy2778 79 GEVTEL 84 (409)
Q Consensus 79 DEid~i 84 (409)
+|+-.-
T Consensus 204 gEiR~~ 209 (270)
T PF00437_consen 204 GEIRDP 209 (270)
T ss_dssp SCE-SC
T ss_pred cccCCH
Confidence 998754
No 356
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.31 E-value=0.00097 Score=58.67 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~ 49 (409)
.+|+.||||+|||++|..++..++. +.+++.......
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~--~~~~iat~~~~~ 39 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL--QVLYIATAQPFD 39 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC--CcEeCcCCCCCh
Confidence 5899999999999999999999875 566666655443
No 357
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.30 E-value=0.00049 Score=63.31 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=30.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGS 45 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~ 45 (409)
-|..++.-++++||||+|||+++..+|.+. +. ..+.++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~--~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGK--KVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEECC
Confidence 355666778999999999999999999755 44 45555544
No 358
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.27 E-value=0.00077 Score=63.77 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=39.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhh-h--hh-hhhhH-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVF-S--SE-IKKTE-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~-~--~~-~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
=|+++|.||+|||++|+.|++.+.. ...++.++..++. . .| -...| .++..++.+.........+|++|..-.+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 3789999999999999999998631 1255555544333 1 11 12334 4555555554433445689999976655
No 359
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.27 E-value=0.00035 Score=62.71 Aligned_cols=37 Identities=35% Similarity=0.695 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~ 49 (409)
-++++||+|||||.+|-++|+.+|+ |++..+.-..+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~--pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGA--PVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCC--CEEEecceeccc
Confidence 4789999999999999999999997 999988866655
No 360
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.26 E-value=4.7e-05 Score=72.19 Aligned_cols=27 Identities=41% Similarity=0.781 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++++||+||+|||||++++..-+.+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 579999999999999999988777654
No 361
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.25 E-value=0.0005 Score=67.27 Aligned_cols=73 Identities=14% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc-hhhhh------------hhhhhH-HHHHHHHHHHhhhhccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS-EVFSS------------EIKKTE-VLMENFRRAIGLRIKES 73 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~-~l~~~------------~~~~~e-~l~~~f~~a~~~~~~~~ 73 (409)
.+.++|+.||+|+||||++++|+..+..+...+.+... ++.-. ..+... ...++++.+.. ..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR---~~p 237 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLR---MRP 237 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhc---CCC
Confidence 45799999999999999999999988654444443321 21110 001111 34456666653 479
Q ss_pred ceEEeccccc
Q psy2778 74 KEVYEGEVTE 83 (409)
Q Consensus 74 ~ii~iDEid~ 83 (409)
..|+++|+-.
T Consensus 238 D~IivGEiR~ 247 (344)
T PRK13851 238 DRILLGEMRD 247 (344)
T ss_pred CeEEEEeeCc
Confidence 9999999854
No 362
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.24 E-value=0.00062 Score=67.30 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=45.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC---CccEEEecCc-hhh-----------hhhhhhhH-HHHHHHHHHHhhhhcc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN---KVPFCPMVGS-EVF-----------SSEIKKTE-VLMENFRRAIGLRIKE 72 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~---~~~~v~i~~~-~l~-----------~~~~~~~e-~l~~~f~~a~~~~~~~ 72 (409)
...+|++||+|+||||+.+++...+.. +...+.+..+ ++. ...++... .+.+.++.+.. ..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR---~~ 225 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALR---RA 225 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhc---cC
Confidence 457899999999999999999988731 1234444322 211 12222211 34455555542 48
Q ss_pred cceEEecccccc
Q psy2778 73 SKEVYEGEVTEL 84 (409)
Q Consensus 73 ~~ii~iDEid~i 84 (409)
|.+|+++|+-.-
T Consensus 226 PD~I~vGEiRd~ 237 (372)
T TIGR02525 226 PKIIGVGEIRDL 237 (372)
T ss_pred CCEEeeCCCCCH
Confidence 999999998653
No 363
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.23 E-value=0.00035 Score=58.69 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.++.-++|.|+.|+|||++++.+++.++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34567889999999999999999999985
No 364
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.23 E-value=0.00066 Score=66.97 Aligned_cols=24 Identities=50% Similarity=0.840 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
.-+++.|.||||||.+|-.+++++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999998
No 365
>PF14516 AAA_35: AAA-like domain
Probab=97.22 E-value=0.031 Score=54.63 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=34.9
Q ss_pred hheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHH
Q psy2778 311 LLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLR 357 (409)
Q Consensus 311 ~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R 357 (409)
...+.+++.|.+|+.++++ ..+.+++++.++.|...+ +|-|=
T Consensus 193 g~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~t-gGhP~ 234 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWT-GGHPY 234 (331)
T ss_pred ccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHH-CCCHH
Confidence 5568899999999998776 346778889999999999 88873
No 366
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.21 E-value=0.0012 Score=57.04 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=42.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhh--------hhhhhhHHHHHHHHHHHhhhhcccceEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFS--------SEIKKTEVLMENFRRAIGLRIKESKEVYEG 79 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~--------~~~~~~e~l~~~f~~a~~~~~~~~~ii~iD 79 (409)
|.-|.|+|.||+||||+|++|.+.|.. ..+.+.+++..+.. ..-+..+.++.+...|.-+ ..+..+++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll-~~~G~ivIva 80 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLL-ADQGIIVIVA 80 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHH-HHTTSEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHH-HhCCCeEEEe
Confidence 346889999999999999999999821 23777777765543 2223344555555555433 2344444443
No 367
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.21 E-value=0.00093 Score=64.63 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=47.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhh-h---------------hhhhHHHHHHHHHH
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSS-E---------------IKKTEVLMENFRRA 65 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~-~---------------~~~~e~l~~~f~~a 65 (409)
|..+++-++++||||||||+++-.++... +. ..+.++..+-... + +...+.+.......
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~--~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGG--TVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC--CEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 45566678899999999999999887554 43 5555555321111 1 11111111222222
Q ss_pred HhhhhcccceEEeccccccccc
Q psy2778 66 IGLRIKESKEVYEGEVTELTPV 87 (409)
Q Consensus 66 ~~~~~~~~~ii~iDEid~i~~~ 87 (409)
++...+.+|++|=+-++.+.
T Consensus 129 --i~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 129 --VRSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred --HhccCCCEEEEcchHhhccc
Confidence 13457899999999998763
No 368
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.20 E-value=0.00064 Score=65.69 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=48.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCchhhhhh----hh---------hhHHHHHHHHHHHh-hh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSEVFSSE----IK---------KTEVLMENFRRAIG-LR 69 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~l~~~~----~~---------~~e~l~~~f~~a~~-~~ 69 (409)
|..+++-++++||||||||+|+..++... ...-+.+.++..+..... .| ......+.+..+.. ++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56667788999999999999988776654 111255555543322110 00 00011122222211 23
Q ss_pred hcccceEEeccccccccc
Q psy2778 70 IKESKEVYEGEVTELTPV 87 (409)
Q Consensus 70 ~~~~~ii~iDEid~i~~~ 87 (409)
...+.+|++|-+-++.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 457899999999998764
No 369
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.20 E-value=0.0004 Score=65.65 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.++++.||||+||||+.++++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 58999999999999999999998854
No 370
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.20 E-value=0.001 Score=60.12 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++-++|+||+|+||||+.+.++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3578899999999999999998543
No 371
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.19 E-value=0.00064 Score=65.94 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecC-chhhh---hh----hhhhHHHHHHHHHHHhhhhcccceE
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVG-SEVFS---SE----IKKTEVLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~-~~l~~---~~----~~~~e~l~~~f~~a~~~~~~~~~ii 76 (409)
.+++++++||+|+|||+++++|+..+ .....++.+.. .++.- .+ .+....+.++++.+.. ..|..|
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR---~~PD~I 223 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLR---MRPDRI 223 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhc---CCCCEE
Confidence 45799999999999999999999874 21123332222 12210 00 0111145667776653 579999
Q ss_pred Eeccccc
Q psy2778 77 YEGEVTE 83 (409)
Q Consensus 77 ~iDEid~ 83 (409)
+++|+-.
T Consensus 224 ivGEiR~ 230 (319)
T PRK13894 224 LVGEVRG 230 (319)
T ss_pred EEeccCC
Confidence 9999864
No 372
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.18 E-value=0.00058 Score=67.75 Aligned_cols=64 Identities=27% Similarity=0.285 Sum_probs=39.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH--cCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE--LGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~--l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i~~ 86 (409)
+.++++.||||||||+++.+++.. +-.. -..+...++.. + -.+..+ ......+|+|||+..+.-
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~-------L---~~~~lg-~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN-------I---STRQIG-LVGRWDVVAFDEVATLKF 274 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH-------H---HHHHHh-hhccCCEEEEEcCCCCcC
Confidence 569999999999999999999877 2110 11111121111 1 111111 234678999999998643
No 373
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.18 E-value=0.00046 Score=66.41 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC---CccEEEecCc-hhh-------hhhhhhhH-HHHHHHHHHHhhhhcccce
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN---KVPFCPMVGS-EVF-------SSEIKKTE-VLMENFRRAIGLRIKESKE 75 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~---~~~~v~i~~~-~l~-------~~~~~~~e-~l~~~f~~a~~~~~~~~~i 75 (409)
.++++|++||+|+||||+++++++.+.. ...++.+... ++. .-..+... .+.++++.+.. ..|..
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR---~~pD~ 207 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLR---LRPDR 207 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhc---CCCCE
Confidence 3579999999999999999999998732 1233333221 211 00011111 44566666653 47999
Q ss_pred EEeccccc
Q psy2778 76 VYEGEVTE 83 (409)
Q Consensus 76 i~iDEid~ 83 (409)
|+++|+-.
T Consensus 208 iivGEiR~ 215 (299)
T TIGR02782 208 IIVGEVRG 215 (299)
T ss_pred EEEeccCC
Confidence 99999854
No 374
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.18 E-value=0.0046 Score=59.56 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=54.8
Q ss_pred CceEEEecCcceeeecccccCCCCCCCchhhhhhhhe--eecCCCCH--HHH---HHH-HHHHHhhcCC---CCCHHHHH
Q psy2778 277 APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI--IRTTPYNQ--KDM---EAI-IKLRANTEGH---VLDDEALV 345 (409)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~--i~~~~~~~--~e~---~~i-l~~~~~~~~~---~i~~~~l~ 345 (409)
...||-+|..... .....-.+-.++.-|+-+ +.++|+-+ .++ .+. +...+.+.++ +++++.+.
T Consensus 334 dVRVIcatq~nL~------~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~ 407 (511)
T COG3283 334 DVRVICATQVNLV------ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLT 407 (511)
T ss_pred EEEEEecccccHH------HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHH
Confidence 3456666654422 112223345566677644 44444322 222 222 2345556665 67899999
Q ss_pred HHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 346 TLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 346 ~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
++.++.+-|+.|.--|.+-+|+...
T Consensus 408 ~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 408 VLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHh
Confidence 9999999999999999999988654
No 375
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.15 E-value=0.00038 Score=63.70 Aligned_cols=24 Identities=42% Similarity=0.750 Sum_probs=18.5
Q ss_pred ce-EEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RA-ILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~-iLl~GPpGtGKT~la~alA~~l 33 (409)
.+ .++.||||||||+++..++..+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 44 8899999999998777666665
No 376
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.14 E-value=0.0004 Score=61.32 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+|.-|+|.||||+||||+++.+++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999985
No 377
>PRK01184 hypothetical protein; Provisional
Probab=97.14 E-value=0.00043 Score=61.54 Aligned_cols=33 Identities=33% Similarity=0.619 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
-|+++||||+||||+++ +++++|. +++.. +++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~--~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGI--PVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCC--cEEEh--hHHH
Confidence 57899999999999987 7888874 55443 4544
No 378
>PLN02199 shikimate kinase
Probab=97.13 E-value=0.00053 Score=65.01 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
.++++|+|.|++|+|||++++.+|+.+++ +|+..+.
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~--~fIDtD~ 135 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGY--TFFDCDT 135 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCC--CEEehHH
Confidence 34689999999999999999999999997 8886553
No 379
>PHA02774 E1; Provisional
Probab=97.13 E-value=0.00078 Score=69.23 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=26.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
|......++|+||||||||++|-+|++.++.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G 460 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG 460 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3433468999999999999999999999864
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.13 E-value=0.00075 Score=65.29 Aligned_cols=73 Identities=15% Similarity=0.280 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC-chhhhh---h---------hhhhH-HHHHHHHHHHhhhhccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG-SEVFSS---E---------IKKTE-VLMENFRRAIGLRIKES 73 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~-~~l~~~---~---------~~~~e-~l~~~f~~a~~~~~~~~ 73 (409)
.+.++++.||+|+||||++++++..+..+...+.+.. .++... + .+... .+.+.++.+. ...|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L---r~~p 219 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL---RMRP 219 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh---cCCC
Confidence 4679999999999999999999988854333333321 111110 0 01111 3455666554 2579
Q ss_pred ceEEeccccc
Q psy2778 74 KEVYEGEVTE 83 (409)
Q Consensus 74 ~ii~iDEid~ 83 (409)
.++++||+-.
T Consensus 220 d~ii~gE~r~ 229 (308)
T TIGR02788 220 DRIILGELRG 229 (308)
T ss_pred CeEEEeccCC
Confidence 9999999874
No 381
>PF13479 AAA_24: AAA domain
Probab=97.13 E-value=0.00073 Score=61.77 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=40.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhh--------hhhhHHHHHHHHHHHhhhhcccceEEecc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSE--------IKKTEVLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~--------~~~~e~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
+-.+++|||||+|||++|..+ +. .-|+....+...-.. +..-+.+.+++..... ....-..|+||-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k-~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~-~~~~y~tiVIDs 76 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PK-PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEE-DEADYDTIVIDS 76 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CC-eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHh-ccCCCCEEEEEC
Confidence 457999999999999999888 32 234444444211100 1111134444444322 134568999998
Q ss_pred cccc
Q psy2778 81 VTEL 84 (409)
Q Consensus 81 id~i 84 (409)
++.+
T Consensus 77 is~~ 80 (213)
T PF13479_consen 77 ISWL 80 (213)
T ss_pred HHHH
Confidence 8775
No 382
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.0012 Score=64.87 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++..|++||||||||++++.+|+.+..
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999998743
No 383
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.13 E-value=0.00045 Score=57.05 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy2778 12 ILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l 33 (409)
+-|+||||||||.+++.||+.+
T Consensus 56 lSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EEeecCCCCcHHHHHHHHHHHH
Confidence 3499999999999999999996
No 384
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.12 E-value=0.071 Score=51.66 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=52.5
Q ss_pred cCCcccccccccccccccCchhhhHHHHHHHhc---ccCCceEEEecCcceeeecccccCCC--CCCCchhhhhhhh--e
Q psy2778 241 VPGVLFIDEVHMLDLETFMPHLETFTYLHRALE---SAIAPIVIFATNRGRCLVRGTDDIIS--PHGIPLDLLDRLL--I 313 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e---~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~l~~r~~--~ 313 (409)
.+=|++|||.++++++ ....+++.+. +-...++|++.++....-.....+.. ......+++++++ .
T Consensus 172 ~~iViiIDdLDR~~~~-------~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~ 244 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE-------EIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVP 244 (325)
T ss_pred ceEEEEEcchhcCCcH-------HHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeE
Confidence 3459999999999987 4333333333 22445677777755221000000000 1134567888885 5
Q ss_pred eecCCCCHHHHHHHHHHHHhh
Q psy2778 314 IRTTPYNQKDMEAIIKLRANT 334 (409)
Q Consensus 314 i~~~~~~~~e~~~il~~~~~~ 334 (409)
+.+++++..++.+.+.....+
T Consensus 245 ~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 245 FSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 788999999999888866443
No 385
>PRK04182 cytidylate kinase; Provisional
Probab=97.11 E-value=0.00049 Score=60.62 Aligned_cols=29 Identities=38% Similarity=0.726 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
.|++.|+||||||++++.||+.++. +++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~--~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL--KHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC--cEec
Confidence 4889999999999999999999985 6654
No 386
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.11 E-value=0.00052 Score=66.44 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=30.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
.++..|.|+|+||||||++++.+|+.+|+ +|+.+.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~--~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGV--PFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCC--CEEeHH
Confidence 45678999999999999999999999996 888544
No 387
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0014 Score=56.74 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=43.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh-------h---h---hhhhHHHHHHHHHHHhhhhccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS-------S---E---IKKTEVLMENFRRAIGLRIKES 73 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~-------~---~---~~~~e~l~~~f~~a~~~~~~~~ 73 (409)
.++..+.|.||+|+|||++.++|+..+...---+.+++..+.. . + ....+.-+-.+..+. ...|
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l---~~~~ 99 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARAL---LLNP 99 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHH---hcCC
Confidence 3456888999999999999999998764322233444432211 0 0 111121111122232 3479
Q ss_pred ceEEeccccc
Q psy2778 74 KEVYEGEVTE 83 (409)
Q Consensus 74 ~ii~iDEid~ 83 (409)
.++++||...
T Consensus 100 ~i~ilDEp~~ 109 (157)
T cd00267 100 DLLLLDEPTS 109 (157)
T ss_pred CEEEEeCCCc
Confidence 9999999775
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.09 E-value=0.0013 Score=57.39 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++..+.|.||+|+|||||.+.|+....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567889999999999999999998763
No 389
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.00093 Score=61.08 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 390
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.09 E-value=0.001 Score=56.80 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++..+.+.||+|+||||+.++|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4567888999999999999999998763
No 391
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.07 E-value=0.00047 Score=60.06 Aligned_cols=30 Identities=37% Similarity=0.670 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
|.|+|+||||||||+++|++. |. +++.=.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~--~~v~E~a 31 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GY--PVVPEYA 31 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T---EEE--TT
T ss_pred EEEECCCCCCHHHHHHHHHHc-CC--eEEeecH
Confidence 789999999999999999998 64 6663333
No 392
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.07 E-value=0.00099 Score=62.97 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=44.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecC-chhhhh-----hhhhh-H-HHHHHHHHHHhhhhcccceEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVG-SEVFSS-----EIKKT-E-VLMENFRRAIGLRIKESKEVYEG 79 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~-~~l~~~-----~~~~~-e-~l~~~f~~a~~~~~~~~~ii~iD 79 (409)
...+++.||+|+||||+.+++...+.. ...++.+.. .++.-. .+... . ...+.++.+.. ..|.+|+++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR---~~PD~i~vg 156 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILR---QDPDIIMVG 156 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhc---cCCCEEEec
Confidence 346899999999999999999887742 123444322 122111 11111 1 24455555542 589999999
Q ss_pred ccccc
Q psy2778 80 EVTEL 84 (409)
Q Consensus 80 Eid~i 84 (409)
|+..-
T Consensus 157 EiR~~ 161 (264)
T cd01129 157 EIRDA 161 (264)
T ss_pred cCCCH
Confidence 98653
No 393
>PRK08233 hypothetical protein; Provisional
Probab=97.06 E-value=0.00052 Score=60.62 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
.-|.+.||||+||||+|+.|++.++. .+.+..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~-~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN-SKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC-CceEEEC
Confidence 45778899999999999999999863 2444443
No 394
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.05 E-value=0.0004 Score=61.30 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCC-ccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNK-VPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~-~~~v~i~~~~ 46 (409)
.++.++++||||+|||++.+++...+... .-++.+++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 35799999999999999999988887432 0155555544
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.05 E-value=0.00049 Score=60.44 Aligned_cols=23 Identities=43% Similarity=0.819 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l 33 (409)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 396
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.04 E-value=0.0014 Score=56.72 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
..++-.++++||+|||||++.+++|.-..-+.--+...|.+
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~ 66 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGED 66 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcc
Confidence 34567899999999999999999998764333334444433
No 397
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.04 E-value=0.00063 Score=60.74 Aligned_cols=27 Identities=30% Similarity=0.628 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+..++|.||+|+||||+++.|+..++.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 357899999999999999999998764
No 398
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.03 E-value=0.00056 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.-+++.||||+||||++++|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35789999999999999999998864
No 399
>KOG1051|consensus
Probab=97.03 E-value=0.0016 Score=70.32 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=82.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchh--hhhhhhhhH-HHHHHHHHHHhhhhcccceEEe
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEV--FSSEIKKTE-VLMENFRRAIGLRIKESKEVYE 78 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l--~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~i 78 (409)
++=+|.|.||+|||.++.-+|+..-. ...++.++-..+ ..++-++.+ ++..+.+.+.. ....-|+|+
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~--~~~gvILfi 286 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES--GGGGVILFL 286 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc--CCCcEEEEe
Confidence 68899999999999999999988721 112333333323 235666676 78888887753 345668899
Q ss_pred cccccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccc--cccCcccccc
Q psy2778 79 GEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAV--KRQGRSDTFA 156 (409)
Q Consensus 79 DEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~--~~~~~~~~~~ 156 (409)
||++-+.+.... .+.. -.-.+++..+..|.+.+|++||... .-+.+.-...
T Consensus 287 gelh~lvg~g~~---~~~~------------------------d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalE 339 (898)
T KOG1051|consen 287 GELHWLVGSGSN---YGAI------------------------DAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALE 339 (898)
T ss_pred cceeeeecCCCc---chHH------------------------HHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchh
Confidence 999999775443 0000 1234455566677788888888221 2223333445
Q ss_pred ccccccceeeccCCCc
Q psy2778 157 AEFDLEAEEYVPLPKG 172 (409)
Q Consensus 157 ~rfd~~~~~~i~~p~~ 172 (409)
+||+. ..++.|..
T Consensus 340 rrw~l---~~v~~pS~ 352 (898)
T KOG1051|consen 340 RRWQL---VLVPIPSV 352 (898)
T ss_pred hCcce---eEeccCcc
Confidence 57875 46666654
No 400
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.01 E-value=0.0016 Score=59.99 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecC
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVG 44 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~ 44 (409)
-|..++..++++||||+|||+++..++... ...-+.+.++.
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 466778889999999999999999877543 21225556655
No 401
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0029 Score=55.17 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=40.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhh--------hhhhhhHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFS--------SEIKKTEVLMENFRRAI 66 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~--------~~~~~~e~l~~~f~~a~ 66 (409)
|.-+.|+|.+|+||||+|.++.+.|.. ......++|..+.. +.-+..++++.+-..|.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAk 89 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAK 89 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHH
Confidence 456889999999999999999999821 13777777755542 33344556666555554
No 402
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.0007 Score=59.72 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=24.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++.-+.|.|+||+|||++|+.|+..+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456889999999999999999999883
No 403
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.98 E-value=0.00074 Score=58.98 Aligned_cols=29 Identities=34% Similarity=0.673 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
-|.++|+||+|||++|+.+|+.++. +++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~--~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSL--KLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC--ceec
Confidence 4789999999999999999999985 5544
No 404
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.98 E-value=0.0023 Score=60.26 Aligned_cols=72 Identities=21% Similarity=0.400 Sum_probs=49.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCc--cEEEecC---------ch-hhhhhhhhhH-HHHHHHHHHHhhhhcccceE
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKV--PFCPMVG---------SE-VFSSEIKKTE-VLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~--~~v~i~~---------~~-l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii 76 (409)
.=||.+||.|+||||...++-..++... +.+.+-. .. +...++|+-. .+..+++.|.. ..|.||
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALR---eDPDVI 202 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALR---EDPDVI 202 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhh---cCCCEE
Confidence 4577889999999999999998886532 3333322 22 2335666544 56666666653 579999
Q ss_pred Eecccccc
Q psy2778 77 YEGEVTEL 84 (409)
Q Consensus 77 ~iDEid~i 84 (409)
++.|.-..
T Consensus 203 lvGEmRD~ 210 (353)
T COG2805 203 LVGEMRDL 210 (353)
T ss_pred EEeccccH
Confidence 99998665
No 405
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.97 E-value=0.00094 Score=60.23 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-++++|+||+|||++|+.+|..++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 467899999999999999999999874
No 406
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.00086 Score=61.71 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFS 49 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~ 49 (409)
+.-|.+.||||+||||+|+.|+..++. ..+++.++..+++-
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 457889999999999999999999932 13666666655553
No 407
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.95 E-value=0.001 Score=61.75 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=31.7
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGS 45 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~ 45 (409)
.-|..++..+|++||||||||+++..++.+. ...-+.+.++..
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 3477788899999999999999998876552 222356666653
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0024 Score=63.43 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-------CCCccEEEecCc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL-------GNKVPFCPMVGS 45 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l-------~~~~~~v~i~~~ 45 (409)
|+.++|+||+|+||||++..+|..+ +.++.++.++..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 5789999999999999999999765 334556666653
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.93 E-value=0.0017 Score=61.92 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc----C-CCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL----G-NKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l----~-~~~~~v~i~~ 44 (409)
++.++|+||+|+||||++..||..+ + .++.++..+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4678899999999999999999876 3 4445555443
No 410
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.93 E-value=0.0076 Score=69.32 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=88.0
Q ss_pred ccCCcccccccccccccccCchhhhHHHHHHHhccc------CCceEEEecCcceeeecccccCCCCCCCchhhhh--hh
Q psy2778 240 LVPGVLFIDEVHMLDLETFMPHLETFTYLHRALESA------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL 311 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--r~ 311 (409)
..|-++||||+|.+.... ........|...|... .+.+||.|||+ |..+.++++. |+
T Consensus 1731 ~SPCIIFIDEIDaL~~~d--s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR-------------PD~LDPALLRPGRF 1795 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNE--SNYLSLGLLVNSLSRDCERCSTRNILVIASTHI-------------PQKVDPALIAPNKL 1795 (2281)
T ss_pred CCCeEEEEEchhhcCCCc--cceehHHHHHHHhccccccCCCCCEEEEEeCCC-------------cccCCHhHcCCCCC
Confidence 578899999999998740 0011245565656522 23567778876 3445555554 44
Q ss_pred -heeecCCCCHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 312 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE--ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 312 -~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~--~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
..|.+..++..+-.+++.......++.++++ .++.+++.+.+-+++.--+++..|...|..+++..|+.+++..|..
T Consensus 1796 DR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1796 NTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred CeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 2344444444444455543333345555543 3788899986668999999999999999888889999999988874
No 411
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.93 E-value=0.0029 Score=61.68 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
.+.+.|.|+||||||||++.|++.++. +++.--+-+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~--~~v~E~~R~ 197 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT--TSAWEYARE 197 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--CEEeehhHH
Confidence 468999999999999999999999885 555444433
No 412
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.92 E-value=0.00091 Score=59.22 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
++..+.+.||+|+||||++++++..++. ..+++.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 4567899999999999999999999873 34555544
No 413
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.91 E-value=0.003 Score=55.87 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++..+.+.||+|+|||||+++|+....
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3567889999999999999999998763
No 414
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0047 Score=65.01 Aligned_cols=134 Identities=24% Similarity=0.261 Sum_probs=90.9
Q ss_pred ccccCCcccccccccccccccCchhhhHHHHHHHhcccCC----------------------ceEEEecCcceeeecccc
Q psy2778 238 AELVPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA----------------------PIVIFATNRGRCLVRGTD 295 (409)
Q Consensus 238 ~~~~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~----------------------~~~i~~~~~~~~~~~~~~ 295 (409)
++...|||||||..+|... .+++++|+|+...- -.+|++-|..
T Consensus 222 HkAngGVLiIdei~lL~~~-------~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~-------- 286 (647)
T COG1067 222 HKANGGVLIIDEIGLLAQP-------LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE-------- 286 (647)
T ss_pred ccccCcEEEEEhhhhhCcH-------HHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH--------
Confidence 3444599999999999988 89999998887511 1244444432
Q ss_pred cCCCCCCCchhhhhhhhe----eecC---CCCHHHHHHHHHHHHh---hc-C-CCCCHHHHHHHHHhcCCc---------
Q psy2778 296 DIISPHGIPLDLLDRLLI----IRTT---PYNQKDMEAIIKLRAN---TE-G-HVLDDEALVTLSEIGTRS--------- 354 (409)
Q Consensus 296 ~~~~~~~~~~~l~~r~~~----i~~~---~~~~~e~~~il~~~~~---~~-~-~~i~~~~l~~I~~~s~~g--------- 354 (409)
++ ..+-+...+|..- ..++ |.++++-...+...+. +. + -+++.+|+..|.+.+.+.
T Consensus 287 ~l---~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl 363 (647)
T COG1067 287 DL---EDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTL 363 (647)
T ss_pred HH---HhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceecc
Confidence 11 1222223444432 3333 3466666666665443 22 3 478889988887665332
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 355 TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 355 ~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
.+|...++++.|...|..+|++.|+.+||.+++..
T Consensus 364 ~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 364 RLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 69999999999999999889999999999999864
No 415
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.90 E-value=0.0024 Score=56.55 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=41.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh--hhh--hhhhHHHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF--SSE--IKKTEVLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~--~~~--~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
++.-+.+.||.|+|||||.+.|+..+...---+.+++..+. ... ....++-+-.+..+. ...|.++++||--+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral---~~~p~lllLDEPts 100 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAAL---LRNATFYLFDEPSA 100 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHH---hcCCCEEEEECCcc
Confidence 45678899999999999999999875321122333332110 011 111221111222222 35899999999754
No 416
>PRK13975 thymidylate kinase; Provisional
Probab=96.90 E-value=0.0015 Score=58.51 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.-|.|.||+|+||||+++.||+.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999999985
No 417
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0075 Score=55.37 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
..++.+-.++||.|+|||||.+.++.+..
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 45678899999999999999999998874
No 418
>PLN02165 adenylate isopentenyltransferase
Probab=96.87 E-value=0.0012 Score=63.88 Aligned_cols=34 Identities=12% Similarity=0.386 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
+..+.|.||+|+|||++|..||+.+++ .++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~--eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPS--EIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCC--ceecCCh
Confidence 456899999999999999999999986 5555443
No 419
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.87 E-value=0.001 Score=60.18 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|+|||++++.|++.++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 566899999999999999999999875
No 420
>KOG0482|consensus
Probab=96.87 E-value=0.021 Score=57.41 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCchhhhhhhhe-------------------------------eecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy2778 302 GIPLDLLDRLLI-------------------------------IRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 350 (409)
Q Consensus 302 ~~~~~l~~r~~~-------------------------------i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~ 350 (409)
.+|.+|+||+-+ ..|+|++.+-+...+. .|+..+=.++++.-++|+..
T Consensus 507 ~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~A 585 (721)
T KOG0482|consen 507 NLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS-LAKRKNPVVPEALADYITGA 585 (721)
T ss_pred CCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHH
Confidence 579999999952 3344566666666666 55555556777878888543
Q ss_pred -------c------CCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHH
Q psy2778 351 -------G------TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSA 397 (409)
Q Consensus 351 -------s------~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~ 397 (409)
+ .-.++|.-+.+|+.+..+|..+=...|+.+||.+++.+.-=++.|+
T Consensus 586 Yv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~sL 645 (721)
T KOG0482|consen 586 YVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSKDSL 645 (721)
T ss_pred HHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhccc
Confidence 1 1458999999999999999887778899999999987754444444
No 421
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.85 E-value=0.0079 Score=64.08 Aligned_cols=135 Identities=20% Similarity=0.216 Sum_probs=93.1
Q ss_pred ccCCcccccccccccccc---cC----chhhhHHHHHHHhcccC---CceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLET---FM----PHLETFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~---~~----~~~~~~~~L~~~~e~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..|.++||||+|.+-... +- ...+.++.|+..|+... ..++|.+||+ |..+.+.++.
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~-------------p~~lD~Al~R 309 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR-------------PDVLDPALLR 309 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCC-------------hhhcCHHHhC
Confidence 357899999999874320 00 01223455555565432 3466667764 4566666663
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..+.++.++.++..+|++...+...+.- +..+..+++.+.+-+++.--+++..|...|..+++..|+.+++.++
T Consensus 310 pgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a 388 (644)
T PRK10733 310 PGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKA 388 (644)
T ss_pred CcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 66 4678999999999999998876644322 2225678888755688899999999998888778889999999887
Q ss_pred HH
Q psy2778 387 ST 388 (409)
Q Consensus 387 ~~ 388 (409)
..
T Consensus 389 ~~ 390 (644)
T PRK10733 389 KD 390 (644)
T ss_pred HH
Confidence 64
No 422
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.84 E-value=0.0013 Score=61.62 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=48.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc----CCCccEEEecCchhhhhhh-hhhH-HHHHHHHHHHh-----hhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL----GNKVPFCPMVGSEVFSSEI-KKTE-VLMENFRRAIG-----LRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l----~~~~~~v~i~~~~l~~~~~-~~~e-~l~~~f~~a~~-----~~~~~~~ii~ 77 (409)
...+||.||.|.||+.+|+.+-..- ...-+|+++|+..+.+... ..-- .+..+|..|.. ++......+|
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 3579999999999999999875321 1112999999987765221 1000 12233322221 2334568999
Q ss_pred ecccccccc
Q psy2778 78 EGEVTELTP 86 (409)
Q Consensus 78 iDEid~i~~ 86 (409)
+|||..+..
T Consensus 288 ldeigelga 296 (531)
T COG4650 288 LDEIGELGA 296 (531)
T ss_pred hHhhhhcCc
Confidence 999999843
No 423
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.004 Score=54.68 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++..+.+.||+|+|||||.++|+..+.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4567889999999999999999998763
No 424
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.83 E-value=0.0028 Score=64.58 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=49.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhhH---------------HHHHHHHHHHhh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKTE---------------VLMENFRRAIGL 68 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~e---------------~l~~~f~~a~~~ 68 (409)
|..++.-+|++|+||+|||+++..+|..+-. .-+.+++++.+-......... .+.++....
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i--- 166 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANI--- 166 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHH---
Confidence 5667778999999999999999999876621 125667776443321111101 112222222
Q ss_pred hhcccceEEecccccccc
Q psy2778 69 RIKESKEVYEGEVTELTP 86 (409)
Q Consensus 69 ~~~~~~ii~iDEid~i~~ 86 (409)
....|.+++||.+..+..
T Consensus 167 ~~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 167 EEENPQACVIDSIQTLYS 184 (454)
T ss_pred HhcCCcEEEEecchhhcc
Confidence 335789999999998754
No 425
>PRK12338 hypothetical protein; Provisional
Probab=96.82 E-value=0.0011 Score=63.81 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
|.-+++.|+|||||||+|+++|+.+++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~ 30 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNI 30 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 568999999999999999999999985
No 426
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.82 E-value=0.0016 Score=58.61 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~ 44 (409)
|+-++|.||+|+||||.+-.||..+ ++++.++..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 4678999999999999988888776 45455555544
No 427
>PF05729 NACHT: NACHT domain
Probab=96.82 E-value=0.001 Score=57.45 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
-++++|+||+|||++++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 478999999999999999998874
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.82 E-value=0.0016 Score=59.12 Aligned_cols=26 Identities=42% Similarity=0.581 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|.+.|||||||||++++|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999984
No 429
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.81 E-value=0.00049 Score=63.43 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy2778 12 ILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l 33 (409)
++++|+||+|||++++.+++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999983
No 430
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=96.80 E-value=0.016 Score=57.77 Aligned_cols=88 Identities=28% Similarity=0.323 Sum_probs=55.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcc------cCCceEEEecCcceeeecccccCCCCCCCchhhhhhh-hee-
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALES------AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LII- 314 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i- 314 (409)
-|+|+||+|+|=.+ +-..|...+|. .++.-|.|.|.. |..+|.++++.+ -.|
T Consensus 257 lVfFfDEAHLLF~d-------a~kall~~ieqvvrLIRSKGVGv~fvTQ~-------------P~DiP~~VL~QLGnrIQ 316 (502)
T PF05872_consen 257 LVFFFDEAHLLFND-------APKALLDKIEQVVRLIRSKGVGVYFVTQN-------------PTDIPDDVLGQLGNRIQ 316 (502)
T ss_pred EEEEEechhhhhcC-------CCHHHHHHHHHHHHHhhccCceEEEEeCC-------------CCCCCHHHHHhhhhHHH
Confidence 47999999998665 54555555553 255668888853 678899999887 233
Q ss_pred -ecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc
Q psy2778 315 -RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 351 (409)
Q Consensus 315 -~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s 351 (409)
.+..+|+.|-+.+=. .++...-.=.-+..+.|..+.
T Consensus 317 HaLRAfTP~DqKavk~-aa~tfr~np~~d~~~~it~Lg 353 (502)
T PF05872_consen 317 HALRAFTPKDQKAVKA-AAETFRPNPAFDTEEVITELG 353 (502)
T ss_pred HHHhcCCHhHHHHHHH-HHHhCCCCccccHHHHHhhcC
Confidence 677788887765433 444322111124456666664
No 431
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.79 E-value=0.0024 Score=55.14 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=35.6
Q ss_pred EcCCCCcHHHHHHHHHHHcC-CCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEec
Q psy2778 15 AGPPGTGKTAIALAMSHELG-NKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEG 79 (409)
Q Consensus 15 ~GPpGtGKT~la~alA~~l~-~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iD 79 (409)
.+++||||||++.+|++-++ | -.+...++.++ ....-+....+.. ......++|.|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~w----gHvQnDnI~~k--~~~~f~~~~l~~L---~~~~~~vViaD 61 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEW----GHVQNDNITGK--RKPKFIKAVLELL---AKDTHPVVIAD 61 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCC----CccccCCCCCC--CHHHHHHHHHHHH---hhCCCCEEEEe
Confidence 58999999999999999998 5 23455555444 2222223333333 12456788888
No 432
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.78 E-value=0.001 Score=59.74 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
|-+.||||+||||+|+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 568999999999999999999973
No 433
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.75 E-value=0.0016 Score=58.80 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSS 50 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~ 50 (409)
.|.-+++.||||+|||+++..+...++ .-.++.+++.++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~-~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG-GGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT--TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc-CCCeEEEehHHHHHh
Confidence 467899999999999999999999982 127888888776543
No 434
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.75 E-value=0.0023 Score=57.34 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|.|.|+||+||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999985
No 435
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.75 E-value=0.002 Score=60.70 Aligned_cols=41 Identities=34% Similarity=0.466 Sum_probs=30.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGS 45 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~ 45 (409)
|..+++.+|++|+||||||+++..++...-. ..+.+.++-.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 4566788999999999999999888876511 1356666553
No 436
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.74 E-value=0.0068 Score=65.37 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=42.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCC---ccEEEecCchhhhhhhhh-----hHHHHHHHHHHHhh-------hhccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNK---VPFCPMVGSEVFSSEIKK-----TEVLMENFRRAIGL-------RIKES 73 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~---~~~v~i~~~~l~~~~~~~-----~e~l~~~f~~a~~~-------~~~~~ 73 (409)
.+-++++|+||||||++++++.+.+... .+++-..++.-....+.+ ...+.+.+...... .....
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 3578999999999999999998766321 233333332222222221 11334444321110 01245
Q ss_pred ceEEecccccc
Q psy2778 74 KEVYEGEVTEL 84 (409)
Q Consensus 74 ~ii~iDEid~i 84 (409)
.+|++||+..+
T Consensus 418 ~llIvDEaSMv 428 (720)
T TIGR01448 418 DLLIVDESSMM 428 (720)
T ss_pred CEEEEeccccC
Confidence 79999998877
No 437
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.74 E-value=0.0051 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++..+.+.||+|+|||+|.++|+...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45678899999999999999999876
No 438
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.73 E-value=0.0016 Score=59.96 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=28.9
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHc----CCCccEEEecC
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHEL----GNKVPFCPMVG 44 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l----~~~~~~v~i~~ 44 (409)
-|..++..+|++||||||||+++..++... |. +.+.++.
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge--~vlyvs~ 56 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE--KVLYVSF 56 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEES
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC--cEEEEEe
Confidence 466778899999999999999999877543 54 5555554
No 439
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.73 E-value=0.0013 Score=62.06 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=24.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-+|++||||||||+++..+|...
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56677889999999999999999887653
No 440
>PRK05973 replicative DNA helicase; Provisional
Probab=96.73 E-value=0.0021 Score=59.49 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=29.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecC
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVG 44 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~ 44 (409)
-|..++.-+|+.|+||+|||+++-.+|... |. +.++++.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge--~vlyfSl 100 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR--TGVFFTL 100 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--eEEEEEE
Confidence 366777789999999999999998887755 43 4455444
No 441
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.73 E-value=0.0027 Score=62.55 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++..++++||+|+||||+.+++++.+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999887
No 442
>KOG0478|consensus
Probab=96.72 E-value=0.063 Score=55.93 Aligned_cols=139 Identities=24% Similarity=0.242 Sum_probs=77.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC--------------CceEEEecCcceeee-cccccCCCCCCCchhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI--------------APIVIFATNRGRCLV-RGTDDIISPHGIPLDL 307 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~--------------~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l 307 (409)
|+.-|||.+-++.. .-+-|+..||..- .+=|+-++|..-.+. .+. ....--.+|+.|
T Consensus 528 GiCCIDEFDKM~dS-------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k-~i~eNI~LpptL 599 (804)
T KOG0478|consen 528 GICCIDEFDKMSDS-------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNK-SIIENINLPPTL 599 (804)
T ss_pred ceEEchhhhhhhHH-------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCC-chhhccCCChhh
Confidence 67778887777666 6777777777531 122455555432221 111 122223568999
Q ss_pred hhhhheee--cCCCCHHHHHHHHHH---------------------------HHhhc-CCCCCHHHHHHHHHh-------
Q psy2778 308 LDRLLIIR--TTPYNQKDMEAIIKL---------------------------RANTE-GHVLDDEALVTLSEI------- 350 (409)
Q Consensus 308 ~~r~~~i~--~~~~~~~e~~~il~~---------------------------~~~~~-~~~i~~~~l~~I~~~------- 350 (409)
+||+-.|. +.+.++.--..+.+. .|.+. --.+++++...+...
T Consensus 600 LSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~ 679 (804)
T KOG0478|consen 600 LSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKI 679 (804)
T ss_pred hhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhh
Confidence 99995433 344433311222111 12221 235567777666433
Q ss_pred c-CCc----cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 351 G-TRS----TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 351 s-~~g----~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
. .+| .+|.--.|.+.+-.+|+..-...+...||++++.+
T Consensus 680 ~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 680 GEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 1 122 36666677777777777666778999999998875
No 443
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=96.72 E-value=0.01 Score=57.75 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=88.7
Q ss_pred Ccccccccccc---cccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCC
Q psy2778 243 GVLFIDEVHML---DLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTP 318 (409)
Q Consensus 243 gvl~ide~~~l---~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~ 318 (409)
.++++++++.+ +.+ ..+.|.+.++++.. .++|+.+..... .-......+...+.+..+.+
T Consensus 63 rlVvv~~~~~~~~~~~~-------~~~~L~~~l~~~~~~~~li~~~~~~~d---------~r~k~~k~l~k~~~~~~~~~ 126 (326)
T PRK07452 63 RLVWLKNSPLCQGCSEE-------LLAELERTLPLIPENTHLLLTNTKKPD---------GRLKSTKLLQKLAEEKEFSL 126 (326)
T ss_pred eEEEEeCchhhccCCHH-------HHHHHHHHHcCCCCCcEEEEEeCCCcc---------hHHHHHHHHHHceeEEEecC
Confidence 46777877554 334 66788888888544 455554321110 00112233444455555544
Q ss_pred ---CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 319 ---YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 319 ---~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
++.+++...+..++++.|+.++++++.+|+... ++|++.+.+-|+-...++. .+...||.++|+.+.+
T Consensus 127 ~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~~-~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 127 IPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAV-GNDSRRLYNELEKLALYAE-NSTKPISAEEVKALVS 197 (326)
T ss_pred CCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CccHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc
Confidence 466789999999999999999999999999999 8999999999998887742 1245799999998764
No 444
>PRK04328 hypothetical protein; Provisional
Probab=96.72 E-value=0.002 Score=60.30 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=31.0
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHH-cCCCccEEEecCch
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHE-LGNKVPFCPMVGSE 46 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~-l~~~~~~v~i~~~~ 46 (409)
-|..++..+|++||||||||+++..++.+ +...-+.+.++..+
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 45667888999999999999999887755 32223566666533
No 445
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.72 E-value=0.0011 Score=58.49 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+-++|.||+|+|||++++.|++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4688999999999999999999764
No 446
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.71 E-value=0.0029 Score=63.86 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCc-cEEEecC------chhhhhhhhhhH--HHHHHHHHHHhhhhcccceEEe
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKV-PFCPMVG------SEVFSSEIKKTE--VLMENFRRAIGLRIKESKEVYE 78 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~-~~v~i~~------~~l~~~~~~~~e--~l~~~f~~a~~~~~~~~~ii~i 78 (409)
|.+-+|++||.|+||||+..++.++++... .++.+.. +.+....++... .....++... -..|.||++
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~L---RqDPDvImV 333 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAIL---RQDPDVIMV 333 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHh---ccCCCeEEE
Confidence 334567889999999999999999986532 2332222 222222222211 2234444443 358999999
Q ss_pred cccccc
Q psy2778 79 GEVTEL 84 (409)
Q Consensus 79 DEid~i 84 (409)
+||-..
T Consensus 334 GEIRD~ 339 (500)
T COG2804 334 GEIRDL 339 (500)
T ss_pred eccCCH
Confidence 999765
No 447
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.70 E-value=0.0074 Score=53.61 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhh
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVF 48 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~ 48 (409)
.++.-+.+.|+||+|||++++.|+..+.. ....+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 34567889999999999999999998731 1245666665543
No 448
>KOG0480|consensus
Probab=96.69 E-value=0.054 Score=55.99 Aligned_cols=138 Identities=23% Similarity=0.296 Sum_probs=82.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCce--------------EEEecCcceee-ecccccCCCCCCCchhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPI--------------VIFATNRGRCL-VRGTDDIISPHGIPLDL 307 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~--------------~i~~~~~~~~~-~~~~~~~~~~~~~~~~l 307 (409)
|+.-|||-+-.|.. .+.+|+.+||...-.+ |+-|+|+.--- .++. +...--.+...+
T Consensus 444 GICCIDEFDKMd~~-------dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~k-tl~eNi~msApi 515 (764)
T KOG0480|consen 444 GICCIDEFDKMDVK-------DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKK-TLRENINMSAPI 515 (764)
T ss_pred ceEEechhcccChH-------hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCcccccc-chhhhcCCCchh
Confidence 88999999988887 7888999999753221 33333322110 0111 222223456668
Q ss_pred hhhhhe--eecC-----------------------------CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh------
Q psy2778 308 LDRLLI--IRTT-----------------------------PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI------ 350 (409)
Q Consensus 308 ~~r~~~--i~~~-----------------------------~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~------ 350 (409)
+||+-. +-+. +|+.+.+..-+.. |....=.++.++-+.|.+.
T Consensus 516 mSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~y-AR~~~P~ls~ea~~~lve~Y~~lR~ 594 (764)
T KOG0480|consen 516 MSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRY-ARNFKPKLSKEASEMLVEKYKGLRQ 594 (764)
T ss_pred hhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHH-HHhcCccccHHHHHHHHHHHHHHHH
Confidence 999843 2233 3444444444442 2222334566666666443
Q ss_pred ---------cCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 351 ---------GTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 351 ---------s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
|..=+.|.--+|++.+-..|..+-++.||++||++++.+
T Consensus 595 ~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 595 RDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred hhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 111147777777777777777777889999999999976
No 449
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.68 E-value=0.0015 Score=59.28 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-+.+.||+|+||||++++|+..++
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566999999999999999999876
No 450
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.67 E-value=0.0018 Score=57.77 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
|.+.|+|||||||+|+.|++.++. +.++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~-~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPN-CCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-CeEEccc
Confidence 568899999999999999999842 3444333
No 451
>PRK10536 hypothetical protein; Provisional
Probab=96.66 E-value=0.0023 Score=59.66 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH-c-CCCccEEEecCch
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE-L-GNKVPFCPMVGSE 46 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~-l-~~~~~~v~i~~~~ 46 (409)
.-++++||+|||||++|.++|.+ + +..+..+.+.-+.
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 47889999999999999999985 3 4335555555443
No 452
>PRK09354 recA recombinase A; Provisional
Probab=96.65 E-value=0.0054 Score=59.93 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=46.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhh-hhh------------hhHHHHHHHHHHHh-
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSS-EIK------------KTEVLMENFRRAIG- 67 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~-~~~------------~~e~l~~~f~~a~~- 67 (409)
|...++-++++||||||||+|+-.++... +. ..++++..+-... +.. ......+.+..+..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~--~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGG--TAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 45566778899999999999998877544 33 5555554331111 100 00001122222211
Q ss_pred hhhcccceEEecccccccc
Q psy2778 68 LRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 68 ~~~~~~~ii~iDEid~i~~ 86 (409)
++...+.+|++|=+-++.+
T Consensus 134 i~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 134 VRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hhcCCCCEEEEeChhhhcc
Confidence 2345789999999998876
No 453
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.65 E-value=0.06 Score=59.79 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=61.9
Q ss_pred CCcccccccccccccccCchhhh-HHHHHHHhccc-CCceEEEecCcceeeecccccCCCCCCC-chhhhhhhheeecC-
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLET-FTYLHRALESA-IAPIVIFATNRGRCLVRGTDDIISPHGI-PLDLLDRLLIIRTT- 317 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~-~~~L~~~~e~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~r~~~i~~~- 317 (409)
|-++++|++|.++.. . ..+|...+... ....+|+++-. .++..+ .......+..+...
T Consensus 122 ~~~lvlDD~h~~~~~-------~~~~~l~~l~~~~~~~~~lv~~sR~-----------~~~~~~~~l~~~~~~~~l~~~~ 183 (903)
T PRK04841 122 PLYLVIDDYHLITNP-------EIHEAMRFFLRHQPENLTLVVLSRN-----------LPPLGIANLRVRDQLLEIGSQQ 183 (903)
T ss_pred CEEEEEeCcCcCCCh-------HHHHHHHHHHHhCCCCeEEEEEeCC-----------CCCCchHhHHhcCcceecCHHh
Confidence 358999999999855 3 33555555543 34455555421 112221 11123444455555
Q ss_pred -CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHH
Q psy2778 318 -PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLL 363 (409)
Q Consensus 318 -~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll 363 (409)
+++.+|..+.+.. ..+.+++++.+..|.+.+ +|.|- ++.++
T Consensus 184 l~f~~~e~~~ll~~---~~~~~~~~~~~~~l~~~t-~Gwp~-~l~l~ 225 (903)
T PRK04841 184 LAFDHQEAQQFFDQ---RLSSPIEAAESSRLCDDV-EGWAT-ALQLI 225 (903)
T ss_pred CCCCHHHHHHHHHh---ccCCCCCHHHHHHHHHHh-CChHH-HHHHH
Confidence 8999999998863 346678999999999999 99884 44443
No 454
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.65 E-value=0.0021 Score=61.91 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~ 45 (409)
+.-+++.||+|||||++|..||+.++. +++..++-
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~--~iis~Ds~ 38 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNG--EIISADSM 38 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCC--cEEecccc
Confidence 357889999999999999999999985 66666553
No 455
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.65 E-value=0.0058 Score=63.06 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++.=++++|+||+||||+|+.++...++
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~ 395 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGY 395 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3567899999999999999999998764
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.64 E-value=0.0017 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.++-++|+|||||||||++++|++.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4577889999999999999999865
No 457
>PLN02840 tRNA dimethylallyltransferase
Probab=96.64 E-value=0.0024 Score=63.79 Aligned_cols=38 Identities=26% Similarity=0.600 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
+.-+++.||+|+|||++|..||+.++. +++..++..++
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~--~iis~Ds~qvY 58 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG--EIISADSVQVY 58 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC--CeEecccccee
Confidence 456889999999999999999999986 67777664443
No 458
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.63 E-value=0.0016 Score=55.79 Aligned_cols=24 Identities=38% Similarity=0.805 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
++++||.||+|+|||++|.++.+.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999999988876
No 459
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.62 E-value=0.0017 Score=57.97 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+|+-++|+||||+|||++++.|.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457799999999999999999998763
No 460
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.59 E-value=0.0026 Score=60.75 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
|--+++.||+|||||++|..||+.++.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~ 118 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGI 118 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999999985
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.58 E-value=0.0017 Score=58.37 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.+.|||||||||++++|+..++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999873
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.58 E-value=0.0018 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.|.||+|+|||++++.|++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 678999999999999999998753
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.57 E-value=0.0019 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA 30 (409)
++..+.|.||+|+|||++++++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34679999999999999999987
No 464
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.56 E-value=0.0023 Score=52.93 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=24.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.++.-|+|.|+=|+|||++++++++.+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34567899999999999999999999985
No 465
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.55 E-value=0.0054 Score=55.45 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA 30 (409)
.-++++||.|+|||++.+.++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 468999999999999999999
No 466
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.55 E-value=0.0027 Score=56.31 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~ 34 (409)
|.+.|+||||||++|+.|++.++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999984
No 467
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.0084 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-++|.||+|+||||++..||..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999754
No 468
>PRK06761 hypothetical protein; Provisional
Probab=96.53 E-value=0.0029 Score=60.03 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+-+++.||||+||||+++.+++.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46899999999999999999999974
No 469
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.53 E-value=0.0019 Score=56.34 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.4
Q ss_pred EcCCCCcHHHHHHHHHHHcCC
Q psy2778 15 AGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 15 ~GPpGtGKT~la~alA~~l~~ 35 (409)
.|||||||||++++++..++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~ 21 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHA 21 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCC
Confidence 499999999999999999974
No 470
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.51 E-value=0.028 Score=58.60 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
.++..+.+.||+|+||||+++.|++.....---+.+++.++
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i 399 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSV 399 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 45778999999999999999999987643223355555443
No 471
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.50 E-value=0.0025 Score=66.46 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
..|.|.|+|||||||+++.+|+.+++ +|+.++.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~--~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRL--PFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCC--CEEEchH
Confidence 47899999999999999999999997 8998775
No 472
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.49 E-value=0.0038 Score=57.96 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=30.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc----CCCccEEEecC
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL----GNKVPFCPMVG 44 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l----~~~~~~v~i~~ 44 (409)
|..++.-+++.||||+|||+++..+|... +. +.+.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~--~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGK--PVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--ceEEEeC
Confidence 77788889999999999999988887655 43 5555554
No 473
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.49 E-value=0.007 Score=54.63 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA 30 (409)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 474
>KOG2170|consensus
Probab=96.48 E-value=0.003 Score=59.52 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=34.0
Q ss_pred CchhhhhhhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy2778 303 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 350 (409)
Q Consensus 303 ~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~ 350 (409)
++..+++- .|.|-|++...+..-+.....+.|...+.+.++.+++.
T Consensus 273 i~~~lid~--fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 273 ISNNLIDH--FIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVERVANS 318 (344)
T ss_pred chhhHHhh--ccCcCcccHHHHHHHHHHHHHhcccccchHHHHHHHHh
Confidence 34444443 35667899888888888888888888888888887765
No 475
>KOG3354|consensus
Probab=96.48 E-value=0.0026 Score=54.12 Aligned_cols=30 Identities=40% Similarity=0.625 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
.-+++-|++||||||+++++++++++ +|+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~--~F~d 42 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGL--KFID 42 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCC--cccc
Confidence 46788899999999999999999996 5553
No 476
>PRK08356 hypothetical protein; Provisional
Probab=96.48 E-value=0.0033 Score=56.53 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.-++|+||||+||||+|+.|+ +.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g 29 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKG 29 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC
Confidence 458899999999999999996 455
No 477
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0041 Score=56.09 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l 47 (409)
+|.-+.|+|+||+||||+++.|+..+.. ....+.+++.++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 4567889999999999999999998732 123555655443
No 478
>PRK10436 hypothetical protein; Provisional
Probab=96.45 E-value=0.0049 Score=62.73 Aligned_cols=74 Identities=20% Similarity=0.405 Sum_probs=44.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCC-ccEEEecCc-hhh-----hhhhhh-hH-HHHHHHHHHHhhhhcccceEEe
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNK-VPFCPMVGS-EVF-----SSEIKK-TE-VLMENFRRAIGLRIKESKEVYE 78 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~-~~~v~i~~~-~l~-----~~~~~~-~e-~l~~~f~~a~~~~~~~~~ii~i 78 (409)
+..-+|++||+|+||||+..++.++++.. ..++.+-.+ +.. ...++. .. .....++.+. -..|.+|++
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~L---R~dPDvI~v 293 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALL---RQDPDVIMV 293 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHh---cCCCCEEEE
Confidence 44568899999999999998888777531 234433321 111 111211 11 2344455443 258999999
Q ss_pred cccccc
Q psy2778 79 GEVTEL 84 (409)
Q Consensus 79 DEid~i 84 (409)
+|+-.-
T Consensus 294 GEIRD~ 299 (462)
T PRK10436 294 GEIRDG 299 (462)
T ss_pred CCCCCH
Confidence 998653
No 479
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.45 E-value=0.004 Score=55.56 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy2778 12 ILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l 33 (409)
|.|.||+|+||||+++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998
No 480
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.45 E-value=0.0039 Score=55.41 Aligned_cols=27 Identities=33% Similarity=0.719 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++-++|.||+|+|||++++.|.+....
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc
Confidence 478999999999999999999999865
No 481
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.44 E-value=0.0034 Score=55.69 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=22.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
|.++|+||+||||+++.+++ +|. +++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~--~~i~ 28 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGI--PVID 28 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCC--CEEe
Confidence 67999999999999999999 663 5443
No 482
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.43 E-value=0.0031 Score=64.80 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
+|.|+|+|||||||+++.+|+.+++ +|+..+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~--~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDL--QFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC--eEEECcH
Confidence 6899999999999999999999996 7875553
No 483
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.43 E-value=0.0097 Score=55.10 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+-.+++.||+|||||+++..|-..+......+.+-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 45899999999999999999988876544444333
No 484
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.43 E-value=0.0066 Score=54.64 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~ 49 (409)
-|.++||||+|||++++.+++.+|. +++ ++.++..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~--~~i--~~D~~~~ 37 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGI--PIL--DADIYAR 37 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC--eEe--eCcHHHH
Confidence 5889999999999999999998774 554 5555443
No 485
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.42 E-value=0.0058 Score=59.85 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=47.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc-hhhhh----------h---hhhhH-HHHHHHHHHHhhhhccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS-EVFSS----------E---IKKTE-VLMENFRRAIGLRIKES 73 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~-~l~~~----------~---~~~~e-~l~~~f~~a~~~~~~~~ 73 (409)
++++++.||+|+|||++.+++...+......+.+... ++... . .+... .+.++++.+.. ..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR---~~P 254 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALR---MRP 254 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhc---cCC
Confidence 5799999999999999999999887543344433322 22210 0 01112 35566666653 479
Q ss_pred ceEEeccccc
Q psy2778 74 KEVYEGEVTE 83 (409)
Q Consensus 74 ~ii~iDEid~ 83 (409)
..|+++|+-.
T Consensus 255 D~IivGEiRg 264 (340)
T TIGR03819 255 DRIVVGEVRG 264 (340)
T ss_pred CeEEEeCcCc
Confidence 9999999864
No 486
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.41 E-value=0.0026 Score=55.91 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l 33 (409)
-++++||||+|||+++..+|..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999876
No 487
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.41 E-value=0.0033 Score=59.85 Aligned_cols=35 Identities=20% Similarity=0.560 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
+++.||+|+|||++|..||+.++. .++.+++-.++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~--~iis~Ds~qvY 36 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNA--EIISVDSMQIY 36 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC--cEEEechhhee
Confidence 689999999999999999999985 67777664443
No 488
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.0027 Score=62.71 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+..++|+||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999864
No 489
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.40 E-value=0.0049 Score=54.16 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
+|++||||+|||++|..++...+. +.+++....-+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~--~~~y~at~~~~ 36 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGG--PVTYIATAEAF 36 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC--CeEEEEccCcC
Confidence 689999999999999999988664 66666554433
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.40 E-value=0.0039 Score=44.89 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
..+|+||.|+||||+..|+.-.+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 599999999999999999988774
No 491
>KOG2543|consensus
Probab=96.39 E-value=0.046 Score=53.29 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=33.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~ 49 (409)
|.++.+||-.|||||.+.+.+-+.++. +.+.+++-+.+.
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n~--~~vw~n~~ecft 68 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLNL--ENVWLNCVECFT 68 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcCC--cceeeehHHhcc
Confidence 578899999999999999999999974 888888866543
No 492
>PTZ00301 uridine kinase; Provisional
Probab=96.38 E-value=0.0027 Score=57.85 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
=|-+.||||+||||+|+.|++.+.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 466899999999999999998873
No 493
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.38 E-value=0.0056 Score=59.69 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC--CCccEEEecCchhh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELG--NKVPFCPMVGSEVF 48 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~--~~~~~v~i~~~~l~ 48 (409)
+.|+|+||+||||++++++..+. ....+..++..+++
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 46899999999999999997774 23466666766665
No 494
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.014 Score=57.52 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=59.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHH---------------HHHHHHHHHhhh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEV---------------LMENFRRAIGLR 69 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~---------------l~~~f~~a~~~~ 69 (409)
|..++.-+|+-|.||.|||||.-.+|..+...-+.+++++.+-........++ +..+++.. .
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l---~ 165 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL---E 165 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH---H
Confidence 45677789999999999999988888887544489999997655544333333 33444444 3
Q ss_pred hcccceEEeccccccccccc
Q psy2778 70 IKESKEVYEGEVTELTPVET 89 (409)
Q Consensus 70 ~~~~~ii~iDEid~i~~~~~ 89 (409)
..+|.+++||=|..+.....
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~ 185 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEI 185 (456)
T ss_pred hcCCCEEEEeccceeecccc
Confidence 47899999999999876543
No 495
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0043 Score=59.31 Aligned_cols=38 Identities=34% Similarity=0.674 Sum_probs=33.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
+.-++++||.++|||.+|-.||+.++. +++.+++-.++
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~--eIIs~DSmQvY 40 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGG--EIISLDSMQVY 40 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCC--cEEecchhhhc
Confidence 467999999999999999999999997 88888875544
No 496
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.37 E-value=0.0043 Score=61.51 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
..|..+.+.||.|||||++.++|...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 34678999999999999999999988854
No 497
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.36 E-value=0.0041 Score=56.99 Aligned_cols=26 Identities=38% Similarity=0.712 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
..|-+.||+||||||+++.||+.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~ 28 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGY 28 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999984
No 498
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.36 E-value=0.0058 Score=64.09 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=44.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCc------hhhhhhhhh-h-HHHHHHHHHHHhhhhcccceEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGS------EVFSSEIKK-T-EVLMENFRRAIGLRIKESKEVYEG 79 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~------~l~~~~~~~-~-e~l~~~f~~a~~~~~~~~~ii~iD 79 (409)
...+|++||+|+||||+..++.+.++. +..++.+-.+ .+....++. . ......++.+. -..|.+|+++
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~L---R~dPDvI~vG 392 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFL---RQDPDIIMVG 392 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHh---ccCCCEEEeC
Confidence 356789999999999999988888853 2234433221 111111111 1 12344445443 3589999999
Q ss_pred ccccc
Q psy2778 80 EVTEL 84 (409)
Q Consensus 80 Eid~i 84 (409)
|+-.-
T Consensus 393 EiRd~ 397 (564)
T TIGR02538 393 EIRDL 397 (564)
T ss_pred CCCCH
Confidence 98754
No 499
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.34 E-value=0.0026 Score=62.91 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
..|||+.||||.||||+|.|+|.-+.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHH
Confidence 47999999999999999999998774
No 500
>PLN02842 nucleotide kinase
Probab=96.34 E-value=0.0042 Score=63.40 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=27.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhh
Q psy2778 13 LMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSE 51 (409)
Q Consensus 13 Ll~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~ 51 (409)
++.||||+||||+++.||+.++. ..++..++....
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~----~hIs~gdLLR~e 35 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGL----VHISTGDLLRAE 35 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCC----CEEEccHHHHHH
Confidence 47899999999999999999863 444455665443
Done!