Query psy2778
Match_columns 409
No_of_seqs 266 out of 2649
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 16:38:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c9o_A RUVB-like 1; hexameric 100.0 2.4E-61 8.1E-66 489.4 16.3 400 2-408 56-455 (456)
2 3uk6_A RUVB-like 2; hexameric 100.0 1.6E-32 5.4E-37 270.0 22.1 284 3-409 64-349 (368)
3 4b4t_J 26S protease regulatory 100.0 1E-31 3.6E-36 263.3 16.2 199 4-232 177-393 (405)
4 3cf2_A TER ATPase, transitiona 100.0 2.6E-31 8.9E-36 281.5 15.4 324 4-371 233-699 (806)
5 4b4t_I 26S protease regulatory 100.0 8.1E-31 2.8E-35 257.6 17.5 199 4-232 211-427 (437)
6 4b4t_M 26S protease regulatory 100.0 1.3E-30 4.3E-35 259.2 13.1 177 4-210 210-399 (434)
7 4b4t_H 26S protease regulatory 100.0 4.8E-30 1.6E-34 254.5 15.7 197 4-230 238-452 (467)
8 4b4t_L 26S protease subunit RP 100.0 4.1E-30 1.4E-34 255.7 15.2 177 4-210 210-399 (437)
9 4b4t_K 26S protease regulatory 100.0 1.4E-29 4.7E-34 251.5 13.2 177 4-210 201-391 (428)
10 3cf2_A TER ATPase, transitiona 99.9 6.6E-28 2.3E-32 255.5 9.9 179 4-212 506-697 (806)
11 3eie_A Vacuolar protein sortin 99.9 1.8E-22 6.3E-27 195.0 16.8 179 4-213 46-235 (322)
12 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.5E-22 5.2E-27 195.6 15.5 177 6-213 42-230 (322)
13 2x8a_A Nuclear valosin-contain 99.9 3.2E-22 1.1E-26 188.9 16.1 178 5-212 40-232 (274)
14 1g41_A Heat shock protein HSLU 99.9 4.5E-22 1.5E-26 198.1 17.7 336 7-399 48-442 (444)
15 3pvs_A Replication-associated 99.9 1.1E-22 3.8E-27 204.5 11.5 140 243-407 108-256 (447)
16 3cf0_A Transitional endoplasmi 99.9 1.1E-21 3.6E-26 187.9 16.5 178 5-212 45-235 (301)
17 2qp9_X Vacuolar protein sortin 99.9 1.1E-21 3.8E-26 192.0 14.3 178 5-213 80-268 (355)
18 2zan_A Vacuolar protein sortin 99.9 2.9E-21 9.9E-26 194.5 15.0 177 6-213 164-352 (444)
19 2ce7_A Cell division protein F 99.9 3.4E-21 1.2E-25 194.3 15.4 176 5-210 45-233 (476)
20 1ypw_A Transitional endoplasmi 99.8 4.5E-21 1.5E-25 206.0 13.0 174 5-209 234-418 (806)
21 3hu3_A Transitional endoplasmi 99.8 1.3E-20 4.3E-25 191.4 15.4 178 5-212 234-421 (489)
22 3h4m_A Proteasome-activating n 99.8 2.8E-20 9.7E-25 176.0 15.5 179 5-211 47-236 (285)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.8 8.5E-20 2.9E-24 170.3 16.1 178 5-212 35-228 (262)
24 3vfd_A Spastin; ATPase, microt 99.8 7E-19 2.4E-23 174.2 23.2 200 7-390 146-365 (389)
25 3b9p_A CG5977-PA, isoform A; A 99.8 4.5E-19 1.5E-23 168.9 20.5 199 8-390 53-272 (297)
26 1lv7_A FTSH; alpha/beta domain 99.8 1.2E-19 3.9E-24 169.5 15.6 176 5-211 41-230 (257)
27 3t15_A Ribulose bisphosphate c 99.8 2.3E-20 7.8E-25 177.9 10.1 163 5-185 32-198 (293)
28 3syl_A Protein CBBX; photosynt 99.8 1E-19 3.4E-24 174.2 14.3 183 7-370 65-262 (309)
29 3te6_A Regulatory protein SIR3 99.8 5E-20 1.7E-24 176.3 11.6 134 243-391 134-316 (318)
30 2dhr_A FTSH; AAA+ protein, hex 99.8 2.2E-19 7.5E-24 182.1 15.2 175 6-210 61-248 (499)
31 3d8b_A Fidgetin-like protein 1 99.8 2.6E-19 9E-24 175.3 14.3 177 7-213 115-302 (357)
32 1sxj_D Activator 1 41 kDa subu 99.8 1.1E-18 3.8E-23 169.8 18.6 126 243-389 135-262 (353)
33 1sxj_C Activator 1 40 kDa subu 99.8 1.6E-19 5.3E-24 175.7 11.9 125 243-388 112-237 (340)
34 3pfi_A Holliday junction ATP-d 99.8 2E-18 6.9E-23 167.3 18.2 99 278-390 155-254 (338)
35 2r62_A Cell division protease 99.8 7.8E-20 2.7E-24 171.5 6.6 178 5-211 40-231 (268)
36 1ypw_A Transitional endoplasmi 99.8 2.7E-20 9.3E-25 199.9 3.8 179 5-213 507-698 (806)
37 1ofh_A ATP-dependent HSL prote 99.8 1.7E-18 5.7E-23 165.3 15.6 91 299-389 181-298 (310)
38 1ixz_A ATP-dependent metallopr 99.8 1.3E-18 4.5E-23 162.0 14.2 175 7-211 47-234 (254)
39 3u61_B DNA polymerase accessor 99.8 9.6E-19 3.3E-23 168.7 13.4 119 243-388 107-235 (324)
40 1sxj_A Activator 1 95 kDa subu 99.8 1.5E-18 5.1E-23 178.0 15.6 123 243-388 150-272 (516)
41 2z4s_A Chromosomal replication 99.8 5.9E-18 2E-22 170.1 19.4 88 302-391 243-333 (440)
42 1in4_A RUVB, holliday junction 99.8 9.4E-18 3.2E-22 162.7 19.9 90 300-390 160-250 (334)
43 2chq_A Replication factor C sm 99.8 4.7E-18 1.6E-22 162.7 13.9 120 243-388 104-224 (319)
44 2chg_A Replication factor C sm 99.7 3.2E-17 1.1E-21 147.9 17.3 120 243-388 104-224 (226)
45 3bos_A Putative DNA replicatio 99.7 7.4E-17 2.5E-21 147.8 19.2 85 302-388 154-241 (242)
46 1hqc_A RUVB; extended AAA-ATPa 99.7 1.9E-17 6.3E-22 159.4 15.4 89 301-390 149-238 (324)
47 1iy2_A ATP-dependent metallopr 99.7 1.2E-17 4E-22 157.8 13.5 174 8-211 72-258 (278)
48 1r6b_X CLPA protein; AAA+, N-t 99.7 1.3E-16 4.5E-21 170.9 23.3 121 242-369 558-714 (758)
49 1iqp_A RFCS; clamp loader, ext 99.7 1.6E-17 5.5E-22 159.5 14.5 119 243-387 112-231 (327)
50 2v1u_A Cell division control p 99.7 7E-17 2.4E-21 158.5 18.7 133 244-389 133-275 (387)
51 1jr3_A DNA polymerase III subu 99.7 4.6E-17 1.6E-21 159.5 17.3 122 243-389 121-243 (373)
52 1sxj_B Activator 1 37 kDa subu 99.7 2.4E-17 8.2E-22 158.0 14.9 120 243-388 109-229 (323)
53 1l8q_A Chromosomal replication 99.7 8.2E-17 2.8E-21 155.2 17.6 86 302-390 147-240 (324)
54 1sxj_E Activator 1 40 kDa subu 99.7 3.9E-17 1.3E-21 159.2 15.0 107 243-370 136-244 (354)
55 2r44_A Uncharacterized protein 99.7 1.7E-16 5.8E-21 153.4 18.8 135 243-391 111-298 (331)
56 1a5t_A Delta prime, HOLB; zinc 99.7 8.3E-17 2.9E-21 156.1 16.2 99 243-367 110-209 (334)
57 1njg_A DNA polymerase III subu 99.7 1.7E-16 6E-21 144.7 15.9 122 242-388 127-249 (250)
58 1qvr_A CLPB protein; coiled co 99.7 2.5E-16 8.5E-21 170.7 19.1 122 242-370 661-819 (854)
59 2qby_B CDC6 homolog 3, cell di 99.7 4.3E-16 1.5E-20 153.2 18.4 126 244-389 136-269 (384)
60 3pxi_A Negative regulator of g 99.7 8.8E-16 3E-20 164.5 21.0 120 242-369 580-723 (758)
61 3m6a_A ATP-dependent protease 99.7 1.4E-16 4.7E-21 164.2 13.8 89 300-388 234-339 (543)
62 1g8p_A Magnesium-chelatase 38 99.7 2.6E-16 8.8E-21 152.9 14.6 131 243-393 146-325 (350)
63 1um8_A ATP-dependent CLP prote 99.7 4.7E-16 1.6E-20 153.1 15.1 87 301-387 254-362 (376)
64 3hws_A ATP-dependent CLP prote 99.7 6.1E-16 2.1E-20 151.6 13.2 81 8-90 50-134 (363)
65 2qby_A CDC6 homolog 1, cell di 99.6 3.3E-15 1.1E-19 146.4 18.2 133 243-389 130-271 (386)
66 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 8.7E-16 3E-20 155.8 13.0 126 243-385 111-281 (500)
67 1d2n_A N-ethylmaleimide-sensit 99.6 1.4E-15 4.8E-20 142.9 11.5 77 6-87 61-139 (272)
68 1fnn_A CDC6P, cell division co 99.6 2.1E-14 7.2E-19 141.1 20.4 130 243-389 127-273 (389)
69 2gno_A DNA polymerase III, gam 99.6 5.5E-15 1.9E-19 141.2 12.4 91 243-365 84-175 (305)
70 2bjv_A PSP operon transcriptio 99.6 9.8E-15 3.4E-19 136.5 10.4 125 243-383 102-250 (265)
71 4fcw_A Chaperone protein CLPB; 99.5 1.7E-14 5.7E-19 137.8 10.5 121 243-370 121-278 (311)
72 3pxg_A Negative regulator of g 99.5 7.4E-14 2.5E-18 141.3 13.8 73 302-374 308-389 (468)
73 1ojl_A Transcriptional regulat 99.5 2.4E-14 8.1E-19 136.9 9.4 126 243-384 98-246 (304)
74 1jr3_D DNA polymerase III, del 99.5 9.8E-14 3.4E-18 134.7 12.4 129 243-389 78-208 (343)
75 3f9v_A Minichromosome maintena 99.5 2.3E-14 7.9E-19 148.9 7.3 142 243-391 393-588 (595)
76 3k1j_A LON protease, ATP-depen 99.4 5.2E-13 1.8E-17 139.4 13.6 128 243-388 203-373 (604)
77 1jbk_A CLPB protein; beta barr 99.4 1.1E-12 3.7E-17 115.1 7.7 79 8-88 42-131 (195)
78 1w5s_A Origin recognition comp 99.3 1.7E-11 5.7E-16 121.3 14.0 134 243-388 140-291 (412)
79 2p65_A Hypothetical protein PF 99.3 7.4E-12 2.5E-16 109.4 8.0 79 9-89 43-132 (187)
80 3f8t_A Predicted ATPase involv 99.2 1.4E-10 4.6E-15 115.1 13.9 153 243-404 302-497 (506)
81 3co5_A Putative two-component 99.2 7.6E-12 2.6E-16 105.9 2.4 63 9-86 27-89 (143)
82 3pxi_A Negative regulator of g 99.1 8.4E-10 2.9E-14 118.1 14.6 70 11-86 523-593 (758)
83 3n70_A Transport activator; si 99.1 9.2E-11 3.2E-15 99.3 5.7 67 8-86 23-90 (145)
84 1r6b_X CLPA protein; AAA+, N-t 99.1 1E-09 3.5E-14 117.4 15.1 71 8-86 487-571 (758)
85 3dzd_A Transcriptional regulat 99.0 1.7E-09 5.7E-14 105.9 12.6 115 243-370 224-361 (368)
86 1ny5_A Transcriptional regulat 99.0 1.9E-09 6.4E-14 106.3 10.0 127 243-385 233-382 (387)
87 3cmw_A Protein RECA, recombina 98.8 3.4E-09 1.1E-13 120.0 6.8 79 8-89 1081-1177(1706)
88 1qvr_A CLPB protein; coiled co 98.8 2.1E-08 7.3E-13 108.5 12.3 73 10-86 589-674 (854)
89 1u0j_A DNA replication protein 98.7 9.1E-08 3.1E-12 88.6 11.6 40 302-342 213-260 (267)
90 2w58_A DNAI, primosome compone 98.7 1.6E-08 5.5E-13 89.9 6.1 70 10-84 55-127 (202)
91 2qen_A Walker-type ATPase; unk 98.7 3.6E-07 1.2E-11 87.6 15.1 117 243-364 130-247 (350)
92 2kjq_A DNAA-related protein; s 98.7 3.3E-08 1.1E-12 83.9 6.9 62 8-86 35-97 (149)
93 2vhj_A Ntpase P4, P4; non- hyd 98.6 3.4E-08 1.2E-12 93.7 6.6 80 5-89 119-199 (331)
94 3ec2_A DNA replication protein 98.6 2.2E-08 7.5E-13 87.5 4.6 72 8-84 37-112 (180)
95 4akg_A Glutathione S-transfera 98.6 2.6E-07 8.8E-12 109.1 13.8 33 301-333 1400-1432(2695)
96 2fna_A Conserved hypothetical 98.6 9.8E-07 3.4E-11 84.7 15.8 113 243-365 139-252 (357)
97 2cqa_A RUVB-like 2; TIP48, TIP 98.5 2.7E-08 9.1E-13 75.9 1.4 90 67-161 4-93 (95)
98 2qgz_A Helicase loader, putati 98.5 7.8E-08 2.7E-12 91.7 3.9 71 9-84 152-226 (308)
99 1tue_A Replication protein E1; 98.4 1.1E-07 3.9E-12 84.3 4.5 27 9-35 58-84 (212)
100 3h4m_A Proteasome-activating n 98.4 1.3E-06 4.4E-11 81.8 10.7 135 242-390 111-258 (285)
101 3eie_A Vacuolar protein sortin 98.3 2E-06 6.7E-11 82.4 11.0 118 241-371 110-236 (322)
102 2qp9_X Vacuolar protein sortin 98.3 4.1E-06 1.4E-10 81.3 13.3 118 241-371 143-269 (355)
103 3cmu_A Protein RECA, recombina 98.3 9.7E-07 3.3E-11 101.3 8.3 81 5-88 1423-1521(2050)
104 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.3E-06 7.7E-11 78.8 8.1 134 242-388 99-247 (262)
105 3sr0_A Adenylate kinase; phosp 98.2 1.9E-06 6.5E-11 77.1 6.4 52 11-66 2-53 (206)
106 4akg_A Glutathione S-transfera 98.2 3.7E-05 1.3E-09 91.1 18.8 65 9-84 645-709 (2695)
107 1xwi_A SKD1 protein; VPS4B, AA 98.2 1.9E-05 6.5E-10 75.5 13.5 117 241-370 105-230 (322)
108 3d8b_A Fidgetin-like protein 1 98.2 9.2E-06 3.1E-10 78.9 11.2 137 241-390 176-334 (357)
109 1svm_A Large T antigen; AAA+ f 98.1 6.6E-06 2.3E-10 80.3 8.2 65 5-86 165-230 (377)
110 1lv7_A FTSH; alpha/beta domain 98.1 2.5E-05 8.6E-10 71.8 11.5 132 242-389 105-251 (257)
111 4b4t_J 26S protease regulatory 98.0 6.4E-05 2.2E-09 73.6 12.6 135 240-388 240-387 (405)
112 1qhx_A CPT, protein (chloramph 97.9 7E-06 2.4E-10 71.0 4.9 35 9-45 3-37 (178)
113 2zan_A Vacuolar protein sortin 97.9 2.8E-05 9.5E-10 77.8 9.5 118 241-371 227-353 (444)
114 3umf_A Adenylate kinase; rossm 97.9 1.3E-05 4.5E-10 72.1 6.4 52 8-63 28-79 (217)
115 3trf_A Shikimate kinase, SK; a 97.9 8.3E-06 2.8E-10 71.0 4.6 33 9-43 5-37 (185)
116 2r2a_A Uncharacterized protein 97.8 1E-05 3.5E-10 71.9 4.3 24 10-33 6-29 (199)
117 4b4t_I 26S protease regulatory 97.8 0.0001 3.4E-09 72.6 11.3 134 240-388 274-421 (437)
118 3vaa_A Shikimate kinase, SK; s 97.8 1.4E-05 4.8E-10 70.7 4.6 34 8-43 24-57 (199)
119 2r62_A Cell division protease 97.8 4.6E-06 1.6E-10 77.3 1.3 134 241-388 103-251 (268)
120 2cvh_A DNA repair and recombin 97.8 2.8E-05 9.7E-10 69.3 6.5 39 5-45 16-54 (220)
121 4b4t_M 26S protease regulatory 97.8 0.00011 3.8E-09 72.8 11.3 135 240-389 273-421 (434)
122 4b4t_L 26S protease subunit RP 97.8 0.00018 6.3E-09 71.3 12.3 135 240-388 273-420 (437)
123 2ce7_A Cell division protein F 97.8 0.00014 4.7E-09 73.1 11.5 134 241-389 108-255 (476)
124 4b4t_H 26S protease regulatory 97.7 0.00023 7.7E-09 70.7 12.2 135 240-388 301-448 (467)
125 2rhm_A Putative kinase; P-loop 97.7 2.3E-05 7.9E-10 68.4 4.5 32 8-41 4-35 (193)
126 3iij_A Coilin-interacting nucl 97.7 2.5E-05 8.5E-10 67.7 4.4 33 8-42 10-42 (180)
127 3vkg_A Dynein heavy chain, cyt 97.7 0.0003 1E-08 84.2 14.0 32 301-332 1438-1469(3245)
128 1zuh_A Shikimate kinase; alpha 97.7 3E-05 1E-09 66.4 4.4 31 10-42 8-38 (168)
129 3kb2_A SPBC2 prophage-derived 97.6 3.4E-05 1.2E-09 66.0 4.5 31 11-43 3-33 (173)
130 1via_A Shikimate kinase; struc 97.6 2.9E-05 9.8E-10 67.0 4.0 30 11-42 6-35 (175)
131 2iyv_A Shikimate kinase, SK; t 97.6 3.2E-05 1.1E-09 67.2 4.3 32 10-43 3-34 (184)
132 1y63_A LMAJ004144AAA protein; 97.6 3.2E-05 1.1E-09 67.5 4.1 32 9-42 10-42 (184)
133 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00012 4.2E-09 67.6 8.2 37 9-47 4-43 (260)
134 3be4_A Adenylate kinase; malar 97.6 3.2E-05 1.1E-09 69.4 4.1 35 6-42 2-36 (217)
135 2cdn_A Adenylate kinase; phosp 97.6 4.8E-05 1.6E-09 67.2 5.0 33 8-42 19-51 (201)
136 1kag_A SKI, shikimate kinase I 97.6 4.3E-05 1.5E-09 65.5 4.6 31 9-41 4-34 (173)
137 1tev_A UMP-CMP kinase; ploop, 97.6 3.9E-05 1.3E-09 67.0 4.1 32 8-41 2-33 (196)
138 1zp6_A Hypothetical protein AT 97.6 3.8E-05 1.3E-09 67.0 3.9 39 7-47 7-45 (191)
139 3tlx_A Adenylate kinase 2; str 97.6 7.1E-05 2.4E-09 68.5 5.8 39 8-50 28-66 (243)
140 1kht_A Adenylate kinase; phosp 97.6 3.6E-05 1.2E-09 67.0 3.6 26 9-34 3-28 (192)
141 2zr9_A Protein RECA, recombina 97.6 0.00019 6.4E-09 69.4 8.9 80 5-86 57-153 (349)
142 3hu3_A Transitional endoplasmi 97.6 0.00024 8.1E-09 71.8 9.7 134 241-388 297-457 (489)
143 4b4t_K 26S protease regulatory 97.5 0.0013 4.5E-08 65.0 14.8 134 240-388 264-412 (428)
144 1ixz_A ATP-dependent metallopr 97.5 0.00023 7.9E-09 65.2 8.8 133 241-387 108-253 (254)
145 1aky_A Adenylate kinase; ATP:A 97.5 5.6E-05 1.9E-09 67.8 4.4 32 9-42 4-35 (220)
146 2c95_A Adenylate kinase 1; tra 97.5 5.4E-05 1.8E-09 66.2 4.1 32 9-42 9-40 (196)
147 3cm0_A Adenylate kinase; ATP-b 97.5 4.1E-05 1.4E-09 66.5 3.3 31 9-41 4-34 (186)
148 2ze6_A Isopentenyl transferase 97.5 6.7E-05 2.3E-09 69.1 4.6 33 11-45 3-35 (253)
149 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00033 1.1E-08 62.7 9.1 29 5-33 19-47 (235)
150 1u94_A RECA protein, recombina 97.5 0.00025 8.7E-09 68.6 8.8 78 5-86 59-155 (356)
151 2vli_A Antibiotic resistance p 97.5 5.5E-05 1.9E-09 65.4 3.8 30 9-40 5-34 (183)
152 1knq_A Gluconate kinase; ALFA/ 97.5 9E-05 3.1E-09 63.7 4.9 29 7-35 6-34 (175)
153 1e6c_A Shikimate kinase; phosp 97.5 6.8E-05 2.3E-09 64.2 4.1 31 10-42 3-33 (173)
154 3lw7_A Adenylate kinase relate 97.5 6.8E-05 2.3E-09 63.9 4.1 30 10-42 2-31 (179)
155 1iy2_A ATP-dependent metallopr 97.5 0.00047 1.6E-08 64.1 10.0 132 241-387 132-277 (278)
156 1gvn_B Zeta; postsegregational 97.5 8.6E-05 2.9E-09 69.7 4.9 38 8-47 32-69 (287)
157 3t61_A Gluconokinase; PSI-biol 97.5 8.8E-05 3E-09 65.5 4.7 31 9-41 18-48 (202)
158 2pez_A Bifunctional 3'-phospho 97.5 8.4E-05 2.9E-09 64.3 4.4 37 7-45 3-42 (179)
159 3cf0_A Transitional endoplasmi 97.5 0.00036 1.2E-08 65.8 9.1 136 241-390 108-281 (301)
160 1zd8_A GTP:AMP phosphotransfer 97.5 7.3E-05 2.5E-09 67.4 4.1 32 9-42 7-38 (227)
161 2bwj_A Adenylate kinase 5; pho 97.4 7.6E-05 2.6E-09 65.4 4.0 31 9-41 12-42 (199)
162 1xp8_A RECA protein, recombina 97.4 0.00028 9.7E-09 68.5 8.3 78 5-86 70-166 (366)
163 1qf9_A UMP/CMP kinase, protein 97.4 8.9E-05 3E-09 64.5 4.3 32 9-42 6-37 (194)
164 1n0w_A DNA repair protein RAD5 97.4 0.00034 1.2E-08 63.2 8.4 42 5-46 20-68 (243)
165 2p5t_B PEZT; postsegregational 97.4 7.4E-05 2.5E-09 68.7 3.9 38 8-47 31-68 (253)
166 1ly1_A Polynucleotide kinase; 97.4 5.7E-05 1.9E-09 65.0 3.0 26 9-34 2-28 (181)
167 1ak2_A Adenylate kinase isoenz 97.4 8.9E-05 3.1E-09 67.2 4.4 32 9-42 16-47 (233)
168 3dl0_A Adenylate kinase; phosp 97.4 8.9E-05 3E-09 66.1 4.3 30 11-42 2-31 (216)
169 3vkg_A Dynein heavy chain, cyt 97.4 0.00069 2.4E-08 81.2 12.6 64 10-84 605-668 (3245)
170 2pt5_A Shikimate kinase, SK; a 97.4 0.00011 3.6E-09 62.7 4.4 30 11-42 2-31 (168)
171 3fb4_A Adenylate kinase; psych 97.4 0.0001 3.5E-09 65.7 4.3 30 11-42 2-31 (216)
172 1nks_A Adenylate kinase; therm 97.4 9.3E-05 3.2E-09 64.4 3.9 37 11-47 3-40 (194)
173 1zak_A Adenylate kinase; ATP:A 97.4 6.8E-05 2.3E-09 67.3 2.9 27 9-35 5-31 (222)
174 3hr8_A Protein RECA; alpha and 97.4 0.00023 7.7E-09 68.8 6.7 80 5-86 57-153 (356)
175 4eun_A Thermoresistant glucoki 97.4 0.00014 4.7E-09 64.3 4.8 28 8-35 28-55 (200)
176 1ukz_A Uridylate kinase; trans 97.4 0.00012 4E-09 64.6 4.2 32 9-42 15-46 (203)
177 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00051 1.7E-08 69.4 8.9 134 240-389 122-270 (499)
178 2plr_A DTMP kinase, probable t 97.3 0.00014 4.8E-09 64.3 3.9 28 8-35 3-30 (213)
179 3crm_A TRNA delta(2)-isopenten 97.3 0.00016 5.5E-09 68.8 4.4 37 10-48 6-42 (323)
180 2z43_A DNA repair and recombin 97.3 0.00024 8.4E-09 67.8 5.6 29 5-33 103-131 (324)
181 1e4v_A Adenylate kinase; trans 97.3 0.00016 5.5E-09 64.5 4.1 30 11-42 2-31 (214)
182 3uie_A Adenylyl-sulfate kinase 97.2 0.00023 7.7E-09 62.8 4.4 26 8-33 24-49 (200)
183 2ga8_A Hypothetical 39.9 kDa p 97.2 4.5E-05 1.5E-09 73.3 -0.2 37 3-43 20-56 (359)
184 3cmw_A Protein RECA, recombina 97.2 0.00061 2.1E-08 77.6 8.8 82 5-86 728-824 (1706)
185 3nwj_A ATSK2; P loop, shikimat 97.2 0.00021 7.3E-09 65.6 4.2 33 9-43 48-80 (250)
186 1kgd_A CASK, peripheral plasma 97.2 0.00024 8.2E-09 61.6 4.1 29 6-34 2-30 (180)
187 1cke_A CK, MSSA, protein (cyti 97.2 0.00028 9.7E-09 63.2 4.6 26 10-35 6-31 (227)
188 2xb4_A Adenylate kinase; ATP-b 97.2 0.00026 9E-09 63.7 4.2 29 11-41 2-30 (223)
189 3cmu_A Protein RECA, recombina 97.2 0.001 3.5E-08 76.7 9.9 82 5-86 728-824 (2050)
190 2pbr_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 60.9 4.6 31 11-43 2-35 (195)
191 2jaq_A Deoxyguanosine kinase; 97.1 0.00029 1E-08 61.8 4.3 28 11-40 2-29 (205)
192 2fz4_A DNA repair protein RAD2 97.1 0.00068 2.3E-08 61.6 6.9 40 10-51 109-149 (237)
193 1v5w_A DMC1, meiotic recombina 97.1 0.00098 3.4E-08 64.1 8.3 29 5-33 118-146 (343)
194 2v54_A DTMP kinase, thymidylat 97.1 0.00026 9.1E-09 62.2 4.0 34 9-43 4-37 (204)
195 2qor_A Guanylate kinase; phosp 97.1 0.00026 9E-09 62.6 4.0 27 8-34 11-37 (204)
196 2eyu_A Twitching motility prot 97.1 0.00025 8.5E-09 65.6 3.7 27 7-33 23-49 (261)
197 2wwf_A Thymidilate kinase, put 97.1 0.00024 8.1E-09 62.9 3.5 28 8-35 9-36 (212)
198 3r20_A Cytidylate kinase; stru 97.1 0.00036 1.2E-08 63.4 4.6 27 9-35 9-35 (233)
199 3e1s_A Exodeoxyribonuclease V, 97.1 0.00069 2.4E-08 69.8 7.4 25 9-33 204-228 (574)
200 3io5_A Recombination and repai 97.1 0.00066 2.3E-08 64.2 6.5 81 6-87 26-126 (333)
201 2bbw_A Adenylate kinase 4, AK4 97.1 0.0003 1E-08 64.2 3.9 27 9-35 27-53 (246)
202 3jvv_A Twitching mobility prot 97.1 0.00027 9.3E-09 68.4 3.6 72 8-82 122-206 (356)
203 1pzn_A RAD51, DNA repair and r 97.1 0.0011 3.8E-08 63.9 7.8 29 5-33 127-155 (349)
204 1ltq_A Polynucleotide kinase; 97.0 0.0011 3.8E-08 62.1 7.6 24 10-33 3-26 (301)
205 2if2_A Dephospho-COA kinase; a 97.0 0.00036 1.2E-08 61.5 3.8 30 11-43 3-32 (204)
206 2z0h_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 60.1 4.5 30 11-42 2-34 (197)
207 1nn5_A Similar to deoxythymidy 97.0 0.00029 1E-08 62.4 3.1 26 9-34 9-34 (215)
208 2yvu_A Probable adenylyl-sulfa 97.0 0.00043 1.5E-08 60.1 4.1 28 7-34 11-38 (186)
209 3ake_A Cytidylate kinase; CMP 97.0 0.0006 2.1E-08 60.0 5.0 31 11-43 4-34 (208)
210 2bdt_A BH3686; alpha-beta prot 97.0 0.0004 1.4E-08 60.4 3.7 25 10-34 3-27 (189)
211 3a8t_A Adenylate isopentenyltr 97.0 0.00035 1.2E-08 66.7 3.5 35 10-46 41-75 (339)
212 1jjv_A Dephospho-COA kinase; P 97.0 0.00047 1.6E-08 60.9 3.9 29 10-41 3-31 (206)
213 1ye8_A Protein THEP1, hypothet 96.9 0.00046 1.6E-08 59.9 3.6 68 242-328 100-172 (178)
214 3foz_A TRNA delta(2)-isopenten 96.9 0.0006 2E-08 64.3 4.6 38 9-48 10-47 (316)
215 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00041 1.4E-08 66.4 3.5 73 8-83 170-251 (330)
216 2h92_A Cytidylate kinase; ross 96.9 0.00067 2.3E-08 60.4 4.2 32 9-42 3-34 (219)
217 2grj_A Dephospho-COA kinase; T 96.9 0.00063 2.2E-08 59.8 3.9 30 11-42 14-43 (192)
218 4e22_A Cytidylate kinase; P-lo 96.9 0.00084 2.9E-08 61.6 4.9 27 9-35 27-53 (252)
219 1uf9_A TT1252 protein; P-loop, 96.9 0.00058 2E-08 59.8 3.6 32 9-43 8-39 (203)
220 3tau_A Guanylate kinase, GMP k 96.9 0.00054 1.9E-08 60.8 3.4 27 8-34 7-33 (208)
221 2qmh_A HPR kinase/phosphorylas 96.9 0.00041 1.4E-08 61.1 2.5 33 9-44 34-66 (205)
222 2j41_A Guanylate kinase; GMP, 96.9 0.00067 2.3E-08 59.6 4.0 26 8-33 5-30 (207)
223 3gmt_A Adenylate kinase; ssgci 96.8 0.0009 3.1E-08 60.5 4.8 38 11-52 10-47 (230)
224 2b8t_A Thymidine kinase; deoxy 96.8 0.001 3.5E-08 59.9 5.0 26 8-33 11-36 (223)
225 3exa_A TRNA delta(2)-isopenten 96.8 0.00068 2.3E-08 64.0 3.9 35 9-45 3-37 (322)
226 1uj2_A Uridine-cytidine kinase 96.8 0.00093 3.2E-08 61.2 4.5 27 9-35 22-48 (252)
227 3tr0_A Guanylate kinase, GMP k 96.8 0.00085 2.9E-08 58.9 4.0 26 8-33 6-31 (205)
228 1q3t_A Cytidylate kinase; nucl 96.8 0.0011 3.7E-08 60.0 4.8 33 7-41 14-46 (236)
229 1ex7_A Guanylate kinase; subst 96.7 0.001 3.5E-08 58.2 4.1 25 10-34 2-26 (186)
230 1m7g_A Adenylylsulfate kinase; 96.7 0.00086 3E-08 59.5 3.7 38 8-45 24-63 (211)
231 1vht_A Dephospho-COA kinase; s 96.7 0.0011 3.7E-08 59.1 4.3 31 9-42 4-34 (218)
232 3c8u_A Fructokinase; YP_612366 96.7 0.0012 4E-08 58.6 4.4 40 8-47 21-63 (208)
233 3fdi_A Uncharacterized protein 96.7 0.0012 4.2E-08 58.4 4.5 31 9-41 6-36 (201)
234 3ney_A 55 kDa erythrocyte memb 96.7 0.0012 4.1E-08 58.3 4.3 28 7-34 17-44 (197)
235 3lda_A DNA repair protein RAD5 96.7 0.0027 9.1E-08 62.3 7.2 42 5-46 174-222 (400)
236 1g5t_A COB(I)alamin adenosyltr 96.7 0.006 2E-07 53.5 8.5 76 9-84 28-132 (196)
237 2qt1_A Nicotinamide riboside k 96.7 0.0008 2.7E-08 59.5 2.9 25 9-33 21-45 (207)
238 3d3q_A TRNA delta(2)-isopenten 96.6 0.0012 4E-08 63.3 4.1 34 10-45 8-41 (340)
239 2ehv_A Hypothetical protein PH 96.6 0.00095 3.3E-08 60.4 3.4 27 5-31 26-52 (251)
240 4a74_A DNA repair and recombin 96.6 0.00097 3.3E-08 59.5 3.3 29 5-33 21-49 (231)
241 3a00_A Guanylate kinase, GMP k 96.6 0.0012 3.9E-08 57.5 3.7 25 10-34 2-26 (186)
242 3zvl_A Bifunctional polynucleo 96.6 0.00075 2.6E-08 66.7 2.7 27 9-35 258-284 (416)
243 1lvg_A Guanylate kinase, GMP k 96.6 0.0011 3.7E-08 58.5 3.5 27 8-34 3-29 (198)
244 2dr3_A UPF0273 protein PH0284; 96.6 0.0011 3.6E-08 59.9 3.4 39 5-45 19-60 (247)
245 2f6r_A COA synthase, bifunctio 96.5 0.0013 4.6E-08 61.3 3.8 31 9-42 75-105 (281)
246 3eph_A TRNA isopentenyltransfe 96.5 0.0015 5E-08 63.9 4.0 34 9-44 2-35 (409)
247 3b6e_A Interferon-induced heli 96.5 0.0057 2E-07 53.7 7.5 25 9-33 48-72 (216)
248 2r8r_A Sensor protein; KDPD, P 96.5 0.0023 8E-08 57.5 4.8 34 10-43 7-43 (228)
249 1x6v_B Bifunctional 3'-phospho 96.5 0.002 6.7E-08 66.7 4.9 37 8-46 51-90 (630)
250 4eaq_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 58.6 3.8 27 8-34 25-51 (229)
251 3asz_A Uridine kinase; cytidin 96.4 0.0015 5.2E-08 57.7 3.3 27 8-34 5-31 (211)
252 2a5y_B CED-4; apoptosis; HET: 96.4 0.035 1.2E-06 56.6 13.8 50 312-363 286-336 (549)
253 1nlf_A Regulatory protein REPA 96.4 0.0017 5.7E-08 60.4 3.4 29 5-33 26-54 (279)
254 4gp7_A Metallophosphoesterase; 96.4 0.0017 5.8E-08 55.7 3.2 23 8-30 8-30 (171)
255 1gtv_A TMK, thymidylate kinase 96.3 0.00094 3.2E-08 59.1 1.4 24 11-34 2-25 (214)
256 2zts_A Putative uncharacterize 96.3 0.0021 7.2E-08 58.0 3.7 28 5-32 26-53 (251)
257 1cr0_A DNA primase/helicase; R 96.3 0.0023 7.7E-08 59.9 4.0 29 5-33 31-59 (296)
258 1z6g_A Guanylate kinase; struc 96.3 0.0023 7.9E-08 57.2 3.8 26 8-33 22-47 (218)
259 3dm5_A SRP54, signal recogniti 96.3 0.0046 1.6E-07 61.2 6.3 26 8-33 99-124 (443)
260 1znw_A Guanylate kinase, GMP k 96.3 0.0026 8.7E-08 56.3 4.0 27 8-34 19-45 (207)
261 3tqf_A HPR(Ser) kinase; transf 96.3 0.0021 7.1E-08 55.3 3.2 27 8-35 15-41 (181)
262 1htw_A HI0065; nucleotide-bind 96.3 0.0026 9E-08 54.0 3.8 27 7-33 31-57 (158)
263 1s96_A Guanylate kinase, GMP k 96.2 0.0033 1.1E-07 56.4 4.0 27 8-34 15-41 (219)
264 2i3b_A HCR-ntpase, human cance 96.2 0.003 1E-07 55.3 3.6 24 10-33 2-25 (189)
265 1rj9_A FTSY, signal recognitio 96.2 0.0039 1.3E-07 58.8 4.6 41 8-48 101-141 (304)
266 4edh_A DTMP kinase, thymidylat 96.1 0.0031 1.1E-07 56.3 3.7 28 7-34 4-31 (213)
267 1rz3_A Hypothetical protein rb 96.1 0.0029 9.9E-08 55.7 3.4 26 8-33 21-46 (201)
268 2v9p_A Replication protein E1; 96.1 0.0037 1.3E-07 58.9 4.2 29 6-34 123-151 (305)
269 2orw_A Thymidine kinase; TMTK, 96.1 0.0038 1.3E-07 54.3 3.7 60 243-318 78-138 (184)
270 3lnc_A Guanylate kinase, GMP k 96.0 0.0024 8.3E-08 57.4 2.5 26 8-33 26-52 (231)
271 3upu_A ATP-dependent DNA helic 96.0 0.0036 1.2E-07 62.6 3.9 24 10-33 46-69 (459)
272 2jeo_A Uridine-cytidine kinase 96.0 0.0039 1.3E-07 56.7 3.8 27 9-35 25-51 (245)
273 1z6t_A APAF-1, apoptotic prote 96.0 0.01 3.6E-07 60.9 7.4 23 9-31 147-169 (591)
274 2i1q_A DNA repair and recombin 96.0 0.0035 1.2E-07 59.5 3.3 29 5-33 94-122 (322)
275 3hdt_A Putative kinase; struct 96.0 0.0045 1.5E-07 55.7 3.8 30 10-41 15-44 (223)
276 2axn_A 6-phosphofructo-2-kinas 95.9 0.0037 1.3E-07 63.5 3.6 27 9-35 35-61 (520)
277 3bh0_A DNAB-like replicative h 95.9 0.0048 1.6E-07 58.5 4.2 41 4-44 63-104 (315)
278 3lv8_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 56.2 3.7 30 5-34 23-52 (236)
279 4b3f_X DNA-binding protein smu 95.9 0.0035 1.2E-07 65.5 3.4 35 11-45 207-242 (646)
280 2oap_1 GSPE-2, type II secreti 95.9 0.0045 1.6E-07 62.7 3.9 37 8-44 259-295 (511)
281 1np6_A Molybdopterin-guanine d 95.9 0.0055 1.9E-07 52.8 3.9 25 9-33 6-30 (174)
282 1c9k_A COBU, adenosylcobinamid 95.9 0.0039 1.3E-07 54.0 3.0 33 12-47 2-34 (180)
283 1vma_A Cell division protein F 95.8 0.0049 1.7E-07 58.2 3.7 26 8-33 103-128 (306)
284 1w4r_A Thymidine kinase; type 95.8 0.0074 2.5E-07 52.9 4.5 36 9-44 20-56 (195)
285 2ewv_A Twitching motility prot 95.8 0.0049 1.7E-07 59.9 3.6 28 7-34 134-161 (372)
286 1odf_A YGR205W, hypothetical 3 95.8 0.0061 2.1E-07 57.1 4.1 27 8-34 30-56 (290)
287 2ocp_A DGK, deoxyguanosine kin 95.8 0.0052 1.8E-07 55.6 3.5 26 9-34 2-27 (241)
288 2px0_A Flagellar biosynthesis 95.8 0.0056 1.9E-07 57.5 3.7 26 8-33 104-129 (296)
289 2gza_A Type IV secretion syste 95.7 0.0063 2.2E-07 58.8 4.1 36 8-43 174-209 (361)
290 1nrj_B SR-beta, signal recogni 95.7 0.0068 2.3E-07 53.5 3.9 25 9-33 12-36 (218)
291 1xjc_A MOBB protein homolog; s 95.7 0.0061 2.1E-07 52.3 3.4 24 10-33 5-28 (169)
292 3b9q_A Chloroplast SRP recepto 95.7 0.0064 2.2E-07 57.3 3.7 26 8-33 99-124 (302)
293 3aez_A Pantothenate kinase; tr 95.7 0.0071 2.4E-07 57.3 4.0 28 7-34 88-115 (312)
294 1m8p_A Sulfate adenylyltransfe 95.6 0.0059 2E-07 62.7 3.6 38 9-46 396-435 (573)
295 1g8f_A Sulfate adenylyltransfe 95.6 0.0055 1.9E-07 61.9 3.3 26 10-35 396-421 (511)
296 1a7j_A Phosphoribulokinase; tr 95.6 0.0044 1.5E-07 58.1 2.4 25 10-34 6-30 (290)
297 3kta_A Chromosome segregation 95.6 0.0083 2.8E-07 51.5 4.0 27 9-35 26-52 (182)
298 1sky_E F1-ATPase, F1-ATP synth 95.6 0.0052 1.8E-07 61.2 2.9 25 9-33 151-175 (473)
299 3e70_C DPA, signal recognition 95.6 0.0076 2.6E-07 57.4 4.0 26 8-33 128-153 (328)
300 3v9p_A DTMP kinase, thymidylat 95.6 0.0069 2.3E-07 54.6 3.3 26 9-34 25-50 (227)
301 1jbk_A CLPB protein; beta barr 95.6 0.0058 2E-07 52.2 2.8 77 243-328 117-194 (195)
302 3tmk_A Thymidylate kinase; pho 95.5 0.0085 2.9E-07 53.5 3.8 27 9-35 5-31 (216)
303 2r6a_A DNAB helicase, replicat 95.5 0.0085 2.9E-07 59.8 4.2 29 5-33 199-227 (454)
304 3tqc_A Pantothenate kinase; bi 95.5 0.0091 3.1E-07 56.7 4.1 25 10-34 93-117 (321)
305 3tif_A Uncharacterized ABC tra 95.5 0.0069 2.4E-07 54.9 3.1 40 7-46 29-68 (235)
306 1sgw_A Putative ABC transporte 95.5 0.0074 2.5E-07 53.9 3.3 38 8-45 34-71 (214)
307 2pcj_A ABC transporter, lipopr 95.5 0.0065 2.2E-07 54.6 2.9 39 8-46 29-67 (224)
308 1b0u_A Histidine permease; ABC 95.5 0.0074 2.5E-07 55.6 3.3 40 8-47 31-70 (262)
309 2cbz_A Multidrug resistance-as 95.5 0.0072 2.5E-07 54.8 3.1 26 8-33 30-55 (237)
310 2ff7_A Alpha-hemolysin translo 95.4 0.0079 2.7E-07 54.9 3.4 39 8-46 34-72 (247)
311 1p9r_A General secretion pathw 95.4 0.0087 3E-07 59.0 3.8 28 8-35 166-193 (418)
312 2q6t_A DNAB replication FORK h 95.4 0.0091 3.1E-07 59.4 4.0 41 4-44 195-237 (444)
313 1p5z_B DCK, deoxycytidine kina 95.4 0.0036 1.2E-07 57.5 1.0 26 9-34 24-49 (263)
314 3kl4_A SRP54, signal recogniti 95.4 0.0073 2.5E-07 59.7 3.2 26 8-33 96-121 (433)
315 3b85_A Phosphate starvation-in 95.4 0.0067 2.3E-07 53.9 2.7 25 8-32 21-45 (208)
316 1sq5_A Pantothenate kinase; P- 95.4 0.0085 2.9E-07 56.5 3.6 27 8-34 79-105 (308)
317 2v3c_C SRP54, signal recogniti 95.4 0.0073 2.5E-07 59.8 3.2 25 9-33 99-123 (432)
318 1g6h_A High-affinity branched- 95.4 0.0083 2.8E-07 55.1 3.3 39 8-46 32-70 (257)
319 2dyk_A GTP-binding protein; GT 95.4 0.0093 3.2E-07 49.4 3.3 23 10-32 2-24 (161)
320 1lw7_A Transcriptional regulat 95.4 0.0093 3.2E-07 57.6 3.7 26 9-34 170-195 (365)
321 2ixe_A Antigen peptide transpo 95.3 0.0091 3.1E-07 55.3 3.5 40 8-47 44-83 (271)
322 1mv5_A LMRA, multidrug resista 95.3 0.008 2.7E-07 54.7 3.0 27 8-34 27-53 (243)
323 2gk6_A Regulator of nonsense t 95.3 0.0092 3.1E-07 62.0 3.8 24 10-33 196-219 (624)
324 3cr8_A Sulfate adenylyltranfer 95.3 0.0069 2.3E-07 61.9 2.7 27 8-34 368-394 (552)
325 1bif_A 6-phosphofructo-2-kinas 95.3 0.0078 2.7E-07 60.3 3.1 27 9-35 39-65 (469)
326 2og2_A Putative signal recogni 95.3 0.012 4E-07 56.9 4.2 41 8-48 156-196 (359)
327 4g1u_C Hemin import ATP-bindin 95.3 0.0099 3.4E-07 54.9 3.5 40 8-47 36-75 (266)
328 2iut_A DNA translocase FTSK; n 95.3 0.18 6.1E-06 51.4 13.1 74 243-330 345-421 (574)
329 4tmk_A Protein (thymidylate ki 95.3 0.011 3.7E-07 52.7 3.7 26 9-34 3-28 (213)
330 1kao_A RAP2A; GTP-binding prot 95.3 0.0097 3.3E-07 49.4 3.2 23 10-32 4-26 (167)
331 2qi9_C Vitamin B12 import ATP- 95.3 0.0088 3E-07 54.7 3.1 38 8-46 25-62 (249)
332 2olj_A Amino acid ABC transpor 95.3 0.0094 3.2E-07 55.0 3.3 39 8-46 49-87 (263)
333 2f9l_A RAB11B, member RAS onco 95.3 0.011 3.6E-07 51.6 3.5 23 10-32 6-28 (199)
334 3ld9_A DTMP kinase, thymidylat 95.3 0.012 4E-07 52.9 3.8 26 9-34 21-46 (223)
335 1ji0_A ABC transporter; ATP bi 95.3 0.0096 3.3E-07 54.1 3.3 39 8-46 31-69 (240)
336 1u8z_A RAS-related protein RAL 95.2 0.01 3.5E-07 49.4 3.2 24 9-32 4-27 (168)
337 2d2e_A SUFC protein; ABC-ATPas 95.2 0.011 3.9E-07 53.9 3.6 25 8-32 28-52 (250)
338 4a1f_A DNAB helicase, replicat 95.2 0.012 4.1E-07 56.2 4.0 29 5-33 42-70 (338)
339 1oix_A RAS-related protein RAB 95.2 0.0097 3.3E-07 51.6 3.0 23 11-33 31-53 (191)
340 2ihy_A ABC transporter, ATP-bi 95.2 0.011 3.7E-07 55.1 3.5 39 8-46 46-84 (279)
341 2ce2_X GTPase HRAS; signaling 95.2 0.0099 3.4E-07 49.3 3.0 23 10-32 4-26 (166)
342 1zu4_A FTSY; GTPase, signal re 95.2 0.012 4E-07 56.0 3.7 26 8-33 104-129 (320)
343 1z2a_A RAS-related protein RAB 95.2 0.012 4.1E-07 49.1 3.5 23 10-32 6-28 (168)
344 2onk_A Molybdate/tungstate ABC 95.2 0.012 4.1E-07 53.4 3.7 25 10-34 25-49 (240)
345 3fvq_A Fe(3+) IONS import ATP- 95.2 0.01 3.6E-07 57.1 3.4 27 8-34 29-55 (359)
346 2ged_A SR-beta, signal recogni 95.2 0.013 4.5E-07 50.4 3.8 24 9-32 48-71 (193)
347 2pze_A Cystic fibrosis transme 95.2 0.01 3.4E-07 53.5 3.1 27 8-34 33-59 (229)
348 1ek0_A Protein (GTP-binding pr 95.1 0.0099 3.4E-07 49.6 2.8 23 10-32 4-26 (170)
349 2yhs_A FTSY, cell division pro 95.1 0.013 4.3E-07 58.8 4.0 26 8-33 292-317 (503)
350 2ghi_A Transport protein; mult 95.1 0.01 3.6E-07 54.5 3.1 26 8-33 45-70 (260)
351 2zu0_C Probable ATP-dependent 95.1 0.012 4.2E-07 54.3 3.6 25 8-32 45-69 (267)
352 1w36_D RECD, exodeoxyribonucle 95.1 0.011 3.7E-07 61.3 3.5 25 9-33 164-188 (608)
353 2f1r_A Molybdopterin-guanine d 95.1 0.0077 2.6E-07 51.7 2.0 37 10-46 3-42 (171)
354 2wji_A Ferrous iron transport 95.1 0.011 3.9E-07 49.6 3.0 22 10-31 4-25 (165)
355 3gfo_A Cobalt import ATP-bindi 95.0 0.011 3.8E-07 54.8 3.1 40 8-47 33-72 (275)
356 1z47_A CYSA, putative ABC-tran 95.0 0.013 4.4E-07 56.4 3.6 27 8-34 40-66 (355)
357 2fwr_A DNA repair protein RAD2 95.0 0.031 1.1E-06 55.6 6.6 42 10-53 109-151 (472)
358 2yyz_A Sugar ABC transporter, 95.0 0.013 4.6E-07 56.4 3.6 27 8-34 28-54 (359)
359 1taf_A TFIID TBP associated fa 95.0 0.17 5.8E-06 36.1 8.5 62 326-391 5-67 (68)
360 2it1_A 362AA long hypothetical 95.0 0.014 4.6E-07 56.5 3.6 27 8-34 28-54 (362)
361 3p32_A Probable GTPase RV1496/ 95.0 0.019 6.6E-07 55.2 4.7 34 10-43 80-116 (355)
362 3rlf_A Maltose/maltodextrin im 95.0 0.014 4.7E-07 56.8 3.6 27 8-34 28-54 (381)
363 1z0j_A RAB-22, RAS-related pro 95.0 0.015 5E-07 48.6 3.4 23 10-32 7-29 (170)
364 3sop_A Neuronal-specific septi 95.0 0.013 4.4E-07 54.2 3.3 24 11-34 4-27 (270)
365 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.015 5E-07 49.1 3.4 23 10-32 8-30 (177)
366 3bgw_A DNAB-like replicative h 95.0 0.015 5E-07 57.9 3.9 40 5-44 193-233 (444)
367 2nzj_A GTP-binding protein REM 94.9 0.014 4.9E-07 49.0 3.3 22 10-31 5-26 (175)
368 1vpl_A ABC transporter, ATP-bi 94.9 0.013 4.3E-07 53.8 3.1 27 8-34 40-66 (256)
369 2zej_A Dardarin, leucine-rich 94.9 0.011 3.8E-07 50.7 2.6 22 10-31 3-24 (184)
370 1c1y_A RAS-related protein RAP 94.9 0.014 4.9E-07 48.5 3.2 22 10-31 4-25 (167)
371 1v43_A Sugar-binding transport 94.9 0.014 5E-07 56.5 3.6 27 8-34 36-62 (372)
372 1g16_A RAS-related protein SEC 94.9 0.015 5E-07 48.6 3.2 23 10-32 4-26 (170)
373 1g29_1 MALK, maltose transport 94.9 0.015 5.1E-07 56.4 3.6 27 8-34 28-54 (372)
374 1q57_A DNA primase/helicase; d 94.9 0.02 6.9E-07 57.7 4.8 40 5-44 238-279 (503)
375 1z08_A RAS-related protein RAB 94.9 0.016 5.5E-07 48.4 3.4 23 10-32 7-29 (170)
376 1ky3_A GTP-binding protein YPT 94.9 0.016 5.4E-07 49.0 3.4 24 9-32 8-31 (182)
377 3d31_A Sulfate/molybdate ABC t 94.9 0.012 4.1E-07 56.6 2.9 39 8-46 25-63 (348)
378 2nq2_C Hypothetical ABC transp 94.9 0.013 4.4E-07 53.7 3.0 27 8-34 30-56 (253)
379 2yz2_A Putative ABC transporte 94.9 0.013 4.5E-07 54.0 3.1 27 8-34 32-58 (266)
380 3kw6_A 26S protease regulatory 94.9 0.025 8.5E-07 41.6 4.0 43 170-212 1-52 (78)
381 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.014 4.8E-07 49.6 3.0 24 9-32 5-28 (186)
382 1tf7_A KAIC; homohexamer, hexa 94.8 0.015 5.1E-07 59.1 3.6 40 6-45 36-77 (525)
383 2wsm_A Hydrogenase expression/ 94.8 0.028 9.6E-07 49.6 5.0 26 10-35 31-56 (221)
384 1r2q_A RAS-related protein RAB 94.8 0.018 6.1E-07 48.0 3.5 23 10-32 7-29 (170)
385 2gj8_A MNME, tRNA modification 94.8 0.015 5.3E-07 49.3 3.1 24 9-32 4-27 (172)
386 1r8s_A ADP-ribosylation factor 94.8 0.019 6.6E-07 47.7 3.6 22 11-32 2-23 (164)
387 3q85_A GTP-binding protein REM 94.8 0.017 5.8E-07 48.3 3.3 21 11-31 4-24 (169)
388 2lkc_A Translation initiation 94.8 0.021 7E-07 48.2 3.8 23 9-31 8-30 (178)
389 1upt_A ARL1, ADP-ribosylation 94.8 0.019 6.6E-07 48.0 3.6 23 9-31 7-29 (171)
390 2qm8_A GTPase/ATPase; G protei 94.8 0.026 8.9E-07 53.9 4.9 26 8-33 54-79 (337)
391 2wjg_A FEOB, ferrous iron tran 94.8 0.016 5.5E-07 49.5 3.1 23 9-31 7-29 (188)
392 2erx_A GTP-binding protein DI- 94.7 0.017 5.8E-07 48.2 3.3 22 10-31 4-25 (172)
393 3bc1_A RAS-related protein RAB 94.7 0.018 6.1E-07 49.2 3.5 23 10-32 12-34 (195)
394 2dpy_A FLII, flagellum-specifi 94.7 0.026 8.8E-07 56.0 5.0 37 8-44 156-192 (438)
395 3nh6_A ATP-binding cassette SU 94.7 0.013 4.3E-07 55.3 2.6 41 7-47 78-118 (306)
396 2wjy_A Regulator of nonsense t 94.7 0.016 5.6E-07 61.8 3.8 24 10-33 372-395 (800)
397 2j37_W Signal recognition part 94.7 0.022 7.7E-07 57.4 4.5 35 8-42 100-137 (504)
398 1tf7_A KAIC; homohexamer, hexa 94.7 0.016 5.3E-07 59.0 3.4 29 5-33 277-305 (525)
399 2obl_A ESCN; ATPase, hydrolase 94.7 0.028 9.5E-07 54.0 5.0 36 8-43 70-105 (347)
400 1knx_A Probable HPR(Ser) kinas 94.7 0.014 4.8E-07 55.0 2.7 27 8-35 146-172 (312)
401 1m7b_A RND3/RHOE small GTP-bin 94.6 0.016 5.5E-07 49.5 2.9 24 9-32 7-30 (184)
402 4hlc_A DTMP kinase, thymidylat 94.6 0.031 1.1E-06 49.3 4.8 32 11-42 4-35 (205)
403 3q72_A GTP-binding protein RAD 94.6 0.017 5.8E-07 48.2 2.9 21 10-30 3-23 (166)
404 2y8e_A RAB-protein 6, GH09086P 94.6 0.019 6.5E-07 48.3 3.2 23 10-32 15-37 (179)
405 3k53_A Ferrous iron transport 94.6 0.018 6.1E-07 53.1 3.2 24 9-32 3-26 (271)
406 3gd7_A Fusion complex of cysti 94.6 0.018 6.2E-07 56.1 3.4 26 8-33 46-71 (390)
407 1oxx_K GLCV, glucose, ABC tran 94.6 0.013 4.3E-07 56.5 2.2 27 8-34 30-56 (353)
408 1m2o_B GTP-binding protein SAR 94.6 0.02 6.9E-07 49.4 3.3 24 9-32 23-46 (190)
409 4dsu_A GTPase KRAS, isoform 2B 94.6 0.021 7.2E-07 48.6 3.4 23 10-32 5-27 (189)
410 1z0f_A RAB14, member RAS oncog 94.6 0.022 7.4E-07 48.0 3.5 23 10-32 16-38 (179)
411 2a9k_A RAS-related protein RAL 94.5 0.019 6.5E-07 48.7 3.1 24 9-32 18-41 (187)
412 2hxs_A RAB-26, RAS-related pro 94.5 0.021 7.1E-07 48.2 3.3 24 9-32 6-29 (178)
413 2oil_A CATX-8, RAS-related pro 94.5 0.022 7.5E-07 49.0 3.5 23 10-32 26-48 (193)
414 2krk_A 26S protease regulatory 94.5 0.035 1.2E-06 41.8 4.1 41 170-210 9-58 (86)
415 3con_A GTPase NRAS; structural 94.5 0.022 7.6E-07 48.8 3.5 24 9-32 21-44 (190)
416 2pjz_A Hypothetical protein ST 94.5 0.018 6.1E-07 53.0 3.0 25 9-33 30-54 (263)
417 2efe_B Small GTP-binding prote 94.5 0.023 7.8E-07 48.1 3.4 23 10-32 13-35 (181)
418 3tw8_B RAS-related protein RAB 94.5 0.02 7E-07 48.3 3.1 22 10-31 10-31 (181)
419 3clv_A RAB5 protein, putative; 94.5 0.023 7.7E-07 48.9 3.4 24 9-32 7-30 (208)
420 2fn4_A P23, RAS-related protei 94.5 0.021 7.3E-07 48.1 3.2 24 9-32 9-32 (181)
421 1ls1_A Signal recognition part 94.5 0.023 7.7E-07 53.3 3.6 26 8-33 97-122 (295)
422 2bme_A RAB4A, RAS-related prot 94.4 0.022 7.5E-07 48.5 3.2 23 10-32 11-33 (186)
423 3ch4_B Pmkase, phosphomevalona 94.4 0.033 1.1E-06 49.1 4.3 31 5-35 7-37 (202)
424 2bbs_A Cystic fibrosis transme 94.4 0.019 6.3E-07 53.8 2.9 26 8-33 63-88 (290)
425 3ice_A Transcription terminati 94.4 0.025 8.4E-07 54.9 3.7 26 8-33 173-198 (422)
426 3kkq_A RAS-related protein M-R 94.4 0.025 8.5E-07 48.1 3.5 24 9-32 18-41 (183)
427 4i1u_A Dephospho-COA kinase; s 94.4 0.036 1.2E-06 49.1 4.6 30 10-42 10-39 (210)
428 1ko7_A HPR kinase/phosphatase; 94.4 0.022 7.4E-07 53.8 3.2 25 8-32 143-167 (314)
429 2g6b_A RAS-related protein RAB 94.4 0.025 8.7E-07 47.7 3.5 23 10-32 11-33 (180)
430 1svi_A GTP-binding protein YSX 94.3 0.024 8.2E-07 48.7 3.3 23 9-31 23-45 (195)
431 1pui_A ENGB, probable GTP-bind 94.3 0.0098 3.3E-07 52.0 0.8 24 8-31 25-48 (210)
432 2hf9_A Probable hydrogenase ni 94.3 0.025 8.6E-07 50.1 3.5 26 9-34 38-63 (226)
433 1vt4_I APAF-1 related killer D 94.3 0.093 3.2E-06 57.2 8.3 24 9-32 150-173 (1221)
434 2gks_A Bifunctional SAT/APS ki 94.3 0.019 6.6E-07 58.6 3.0 36 9-44 372-408 (546)
435 2cxx_A Probable GTP-binding pr 94.3 0.022 7.5E-07 48.6 3.0 21 11-31 3-23 (190)
436 2gf9_A RAS-related protein RAB 94.3 0.027 9.1E-07 48.3 3.5 23 10-32 23-45 (189)
437 2xzl_A ATP-dependent helicase 94.3 0.025 8.5E-07 60.5 3.8 24 10-33 376-399 (802)
438 1yrb_A ATP(GTP)binding protein 94.2 0.042 1.4E-06 49.9 4.9 24 10-33 15-38 (262)
439 3tkl_A RAS-related protein RAB 94.2 0.028 9.5E-07 48.3 3.5 23 10-32 17-39 (196)
440 3t15_A Ribulose bisphosphate c 94.2 0.34 1.2E-05 45.0 11.2 102 240-357 98-221 (293)
441 2bov_A RAla, RAS-related prote 94.2 0.027 9.1E-07 48.8 3.3 24 9-32 14-37 (206)
442 2atv_A RERG, RAS-like estrogen 94.2 0.029 1E-06 48.4 3.6 24 9-32 28-51 (196)
443 4ag6_A VIRB4 ATPase, type IV s 94.2 0.03 1E-06 54.5 4.0 97 242-354 263-362 (392)
444 2www_A Methylmalonic aciduria 94.2 0.032 1.1E-06 53.5 4.1 25 9-33 74-98 (349)
445 1j8m_F SRP54, signal recogniti 94.2 0.023 7.8E-07 53.3 3.0 25 9-33 98-122 (297)
446 2rcn_A Probable GTPase ENGC; Y 94.2 0.028 9.4E-07 54.2 3.6 26 8-33 214-239 (358)
447 3bwd_D RAC-like GTP-binding pr 94.2 0.034 1.1E-06 47.0 3.8 24 9-32 8-31 (182)
448 3dz8_A RAS-related protein RAB 94.1 0.029 9.9E-07 48.2 3.4 24 10-33 24-47 (191)
449 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.034 1.2E-06 46.4 3.7 25 9-33 23-47 (149)
450 1x3s_A RAS-related protein RAB 94.1 0.03 1E-06 48.0 3.5 24 9-32 15-38 (195)
451 2xxa_A Signal recognition part 94.1 0.028 9.6E-07 55.6 3.7 26 8-33 99-124 (433)
452 3t1o_A Gliding protein MGLA; G 94.1 0.03 1E-06 48.0 3.5 24 10-33 15-38 (198)
453 2iwr_A Centaurin gamma 1; ANK 94.1 0.023 7.7E-07 48.1 2.6 24 9-32 7-30 (178)
454 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.026 9E-07 56.3 3.4 26 8-33 137-162 (460)
455 3ihw_A Centg3; RAS, centaurin, 94.1 0.03 1E-06 48.1 3.4 24 9-32 20-43 (184)
456 2fg5_A RAB-22B, RAS-related pr 94.1 0.028 9.4E-07 48.5 3.2 23 10-32 24-46 (192)
457 3c5c_A RAS-like protein 12; GD 94.1 0.03 1E-06 48.1 3.4 23 10-32 22-44 (187)
458 3t5g_A GTP-binding protein RHE 94.1 0.029 9.9E-07 47.5 3.2 22 10-31 7-28 (181)
459 3pqc_A Probable GTP-binding pr 94.1 0.035 1.2E-06 47.5 3.8 23 10-32 24-46 (195)
460 2qag_B Septin-6, protein NEDD5 94.1 0.022 7.7E-07 56.0 2.8 21 12-32 45-65 (427)
461 1zd9_A ADP-ribosylation factor 94.1 0.031 1.1E-06 47.9 3.5 23 10-32 23-45 (188)
462 1vg8_A RAS-related protein RAB 94.1 0.031 1.1E-06 48.5 3.4 24 9-32 8-31 (207)
463 1z06_A RAS-related protein RAB 94.0 0.032 1.1E-06 47.9 3.4 23 10-32 21-43 (189)
464 1ksh_A ARF-like protein 2; sma 94.0 0.03 1E-06 47.8 3.3 24 8-31 17-40 (186)
465 2p5s_A RAS and EF-hand domain 94.0 0.032 1.1E-06 48.4 3.5 24 9-32 28-51 (199)
466 2a5j_A RAS-related protein RAB 94.0 0.032 1.1E-06 47.9 3.5 23 10-32 22-44 (191)
467 2fh5_B SR-beta, signal recogni 94.0 0.033 1.1E-06 48.8 3.6 24 9-32 7-30 (214)
468 1moz_A ARL1, ADP-ribosylation 94.0 0.021 7E-07 48.5 2.1 23 8-30 17-39 (183)
469 3reg_A RHO-like small GTPase; 94.0 0.033 1.1E-06 48.0 3.5 23 10-32 24-46 (194)
470 1zbd_A Rabphilin-3A; G protein 94.0 0.031 1E-06 48.5 3.3 23 10-32 9-31 (203)
471 3kw6_A 26S protease regulatory 94.0 0.18 6.2E-06 36.8 7.1 72 318-390 2-73 (78)
472 1f6b_A SAR1; gtpases, N-termin 94.0 0.027 9.1E-07 49.0 2.8 22 9-30 25-46 (198)
473 2bcg_Y Protein YP2, GTP-bindin 93.9 0.031 1.1E-06 48.6 3.2 23 10-32 9-31 (206)
474 3tui_C Methionine import ATP-b 93.9 0.033 1.1E-06 53.8 3.6 40 8-47 53-92 (366)
475 3cph_A RAS-related protein SEC 93.9 0.035 1.2E-06 48.4 3.5 24 9-32 20-43 (213)
476 2vp4_A Deoxynucleoside kinase; 93.9 0.019 6.5E-07 51.5 1.7 24 9-32 20-43 (230)
477 3oes_A GTPase rhebl1; small GT 93.9 0.033 1.1E-06 48.4 3.2 23 10-32 25-47 (201)
478 1fzq_A ADP-ribosylation factor 93.8 0.032 1.1E-06 47.6 3.1 23 9-31 16-38 (181)
479 2gf0_A GTP-binding protein DI- 93.8 0.034 1.1E-06 47.9 3.2 24 9-32 8-31 (199)
480 1wp9_A ATP-dependent RNA helic 93.8 0.18 6.3E-06 49.2 9.0 41 11-51 25-68 (494)
481 1gwn_A RHO-related GTP-binding 93.8 0.034 1.2E-06 48.7 3.2 23 10-32 29-51 (205)
482 2ew1_A RAS-related protein RAB 93.8 0.034 1.2E-06 48.6 3.2 23 10-32 27-49 (201)
483 3thx_B DNA mismatch repair pro 93.8 0.099 3.4E-06 56.5 7.4 24 8-31 672-695 (918)
484 2ffh_A Protein (FFH); SRP54, s 93.8 0.036 1.2E-06 54.6 3.7 26 8-33 97-122 (425)
485 3b5x_A Lipid A export ATP-bind 93.7 0.043 1.5E-06 56.4 4.3 41 7-47 367-407 (582)
486 2yv5_A YJEQ protein; hydrolase 93.7 0.041 1.4E-06 51.7 3.7 26 8-34 164-189 (302)
487 2fu5_C RAS-related protein RAB 93.6 0.023 7.8E-07 48.3 1.8 22 10-31 9-30 (183)
488 1zj6_A ADP-ribosylation factor 93.6 0.042 1.4E-06 46.9 3.4 23 9-31 16-38 (187)
489 2atx_A Small GTP binding prote 93.6 0.039 1.3E-06 47.4 3.2 23 10-32 19-41 (194)
490 2p67_A LAO/AO transport system 93.5 0.04 1.4E-06 52.7 3.4 25 9-33 56-80 (341)
491 2cjw_A GTP-binding protein GEM 93.5 0.045 1.5E-06 47.3 3.5 24 10-33 7-30 (192)
492 4bas_A ADP-ribosylation factor 93.5 0.034 1.2E-06 47.8 2.7 23 9-31 17-39 (199)
493 2o52_A RAS-related protein RAB 93.5 0.039 1.3E-06 48.0 3.1 22 10-31 26-47 (200)
494 2b6h_A ADP-ribosylation factor 93.5 0.042 1.4E-06 47.4 3.3 22 9-30 29-50 (192)
495 1u0l_A Probable GTPase ENGC; p 93.5 0.035 1.2E-06 52.0 2.9 26 9-34 169-194 (301)
496 3lxx_A GTPase IMAP family memb 93.5 0.041 1.4E-06 49.4 3.3 23 10-32 30-52 (239)
497 2q3h_A RAS homolog gene family 93.5 0.043 1.5E-06 47.5 3.3 23 9-31 20-42 (201)
498 2fv8_A H6, RHO-related GTP-bin 93.5 0.041 1.4E-06 48.0 3.2 23 10-32 26-48 (207)
499 3co5_A Putative two-component 93.4 0.043 1.5E-06 45.2 3.0 63 242-319 76-142 (143)
500 2gco_A H9, RHO-related GTP-bin 93.4 0.044 1.5E-06 47.6 3.2 23 10-32 26-48 (201)
No 1
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=100.00 E-value=2.4e-61 Score=489.41 Aligned_cols=400 Identities=80% Similarity=1.217 Sum_probs=331.8
Q ss_pred ccccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEeccc
Q psy2778 2 IKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEV 81 (409)
Q Consensus 2 i~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEi 81 (409)
++.|..+++++||+||||||||++|+++|++++.+++|+.++++++.++|+++++.+++.|+.+.+.+..+|++||+||+
T Consensus 56 ~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEi 135 (456)
T 2c9o_A 56 IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEV 135 (456)
T ss_dssp HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEE
T ss_pred HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEech
Confidence 34677788999999999999999999999999977799999999999999999999999999986656678999999999
Q ss_pred ccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccc
Q psy2778 82 TELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 82 d~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
|++++++.....++..+..+.++.+|.+.++...+++.+++++.+.+.++..+++++|.+||+++..+++++.+++|||+
T Consensus 136 d~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~ 215 (456)
T 2c9o_A 136 TELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL 215 (456)
T ss_dssp EEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSC
T ss_pred hhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCc
Confidence 99999987766555666667777788888999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhcccccc
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAELV 241 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 241 (409)
++..++|+|.++.+.|+++++.++.+|++.++..++||+|+.++|..++......+...+++.++..+.+|.+++..++.
T Consensus 216 ~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~ 295 (456)
T 2c9o_A 216 EAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELV 295 (456)
T ss_dssp SSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC-----------------------------CHHHHHHHHHHHTTSEEEE
T ss_pred ceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88899999999999999999999999999999999999999999987666666778888899999999999999999999
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++|+||||+|+|+.+ ++++|+++||.+..+++|++||.+.+++++++....++.+|+.++|||..++|.||+.
T Consensus 296 ~~VliIDEa~~l~~~-------a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~ 368 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE-------CFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTP 368 (456)
T ss_dssp ECEEEEESGGGCBHH-------HHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCH
T ss_pred ceEEEEechhhcCHH-------HHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCH
Confidence 999999999999999 9999999999999999999999999999888447779999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARILT 401 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~~~~ 401 (409)
+++.++|+.+++.+++.++++++.+|+++|.+|++|+|+++|+.|...|..+|+..|+.+||++++++|+|.++|++|++
T Consensus 369 ~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~ 448 (456)
T 2c9o_A 369 QEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILA 448 (456)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHH
Confidence 99999999999999999999999999999867899999999999999998889999999999999999999999999999
Q ss_pred Hhhhhhc
Q psy2778 402 ENKDKFM 408 (409)
Q Consensus 402 ~~~~~~~ 408 (409)
+++.+|+
T Consensus 449 ~~~~~~~ 455 (456)
T 2c9o_A 449 DQQDKYM 455 (456)
T ss_dssp C------
T ss_pred HHHHhcc
Confidence 9999986
No 2
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=100.00 E-value=1.6e-32 Score=269.95 Aligned_cols=284 Identities=48% Similarity=0.813 Sum_probs=220.9
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcc--cceEEecc
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKE--SKEVYEGE 80 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~--~~ii~iDE 80 (409)
+.|..+++++||+||||||||++|+++|+.++.+.+++.+++..+.+.+.+..+.+.+.|+++.+.+..+ +..+.+++
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHE 143 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHH
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhh
Confidence 4567777899999999999999999999999987899999999999999998888778887654321111 11222222
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+|.+
T Consensus 144 ld~~---------------------------------------------------------------------------- 147 (368)
T 3uk6_A 144 IDVI---------------------------------------------------------------------------- 147 (368)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 2221
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhccccc
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAEL 240 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 240 (409)
.....+ +. .++.+...+....+++.++.....+...+....
T Consensus 148 --------------------------------~~~~~~---~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (368)
T 3uk6_A 148 --------------------------------NSRTQG---FL----ALFSGDTGEIKSEVREQINAKVAEWREEGKAEI 188 (368)
T ss_dssp --------------------------------TC-------CC----SCC-------CHHHHHHHHHHHHHHHHHTC---
T ss_pred --------------------------------hccccc---ch----hhccCcccccHHHHHHHHHHHHHHhhhhccccc
Confidence 111110 00 001112233455666677777777778888777
Q ss_pred cCCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 241 VPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
.++++||||+|.++.+ .++.|++.+|.+..++++++++++...+.++ +.++++.+++++++||..+.++|++
T Consensus 189 ~~~vl~IDEi~~l~~~-------~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t-~~~~~~~l~~~l~sR~~~i~~~~~~ 260 (368)
T 3uk6_A 189 IPGVLFIDEVHMLDIE-------SFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIPIDLLDRLLIVSTTPYS 260 (368)
T ss_dssp CBCEEEEESGGGSBHH-------HHHHHHHHTTCTTCCEEEEEESCSEEECBTS-SCEEETTCCHHHHTTEEEEEECCCC
T ss_pred cCceEEEhhccccChH-------HHHHHHHHhhCcCCCeeeeecccceeeeecc-CCCCcccCCHHHHhhccEEEecCCC
Confidence 8899999999999999 9999999999999999999999998888888 7788899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARIL 400 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~~~ 400 (409)
.+++.++++.++...++.++++++++|++.+..|++|+++++|+.+...|..++...|+.++|++++..|.|.+++.+++
T Consensus 261 ~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~ 340 (368)
T 3uk6_A 261 EKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYM 340 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999993399999999999999999888888999999999999999999999999
Q ss_pred HHhhhhhcC
Q psy2778 401 TENKDKFMR 409 (409)
Q Consensus 401 ~~~~~~~~~ 409 (409)
+++...|+|
T Consensus 341 ~~~~~~~~~ 349 (368)
T 3uk6_A 341 KEYQDAFLF 349 (368)
T ss_dssp C--------
T ss_pred HHhhhhhhh
Confidence 999999986
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-31 Score=263.27 Aligned_cols=199 Identities=20% Similarity=0.306 Sum_probs=153.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..||+|+|||||||||||++|+|+|++++. +|+.++++++.++|+|+++ .++++|..|. ..+||||||||+|
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--~f~~v~~s~l~sk~vGese~~vr~lF~~Ar---~~aP~IIFiDEiD 251 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--KFIRVSGAELVQKYIGEGSRMVRELFVMAR---EHAPSIIFMDEID 251 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--EEEEEEGGGGSCSSTTHHHHHHHHHHHHHH---HTCSEEEEEESSS
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--CceEEEhHHhhccccchHHHHHHHHHHHHH---HhCCceEeeecch
Confidence 37788999999999999999999999999996 9999999999999999999 7899999995 4689999999999
Q ss_pred cccccccCCCCCCcc---chhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 83 ELTPVETENPMGGYG---KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+++++|.....++.. +.+++++..|+ |+.....|+|++|||+++.++++..|+|||
T Consensus 252 ai~~~R~~~~~~~~~~~~~~l~~lL~~lD---------------------g~~~~~~V~vIaATNrpd~LDpAllRpGRf 310 (405)
T 4b4t_J 252 SIGSTRVEGSGGGDSEVQRTMLELLNQLD---------------------GFETSKNIKIIMATNRLDILDPALLRPGRI 310 (405)
T ss_dssp CCTTSCSCSSSGGGGHHHHHHHHHHHHHH---------------------TTTCCCCEEEEEEESCSSSSCHHHHSTTSS
T ss_pred hhccCCCCCCCCCcHHHHHHHHHHHHhhh---------------------ccCCCCCeEEEeccCChhhCCHhHcCCCcC
Confidence 999988765443322 34444444333 334444566666777999999999999999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH----hhhhhhh-hHHHHHHH
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI----KSKKTEI-TDKLRKEI 225 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~----~~~~~~~-~~~~~~~i 225 (409)
|+ .+.+|.|+...|..||+.+.. -|++.+|..|+| ||||.++|..+. +.+...+ .+.+...+
T Consensus 311 D~----~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 311 DR----KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAV 386 (405)
T ss_dssp CC----EEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred ce----EEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 95 444555577789998876532 168899999999 999999997653 2222222 34566666
Q ss_pred HHHHHHH
Q psy2778 226 NKVVNKY 232 (409)
Q Consensus 226 ~~~~~~~ 232 (409)
++++.+.
T Consensus 387 ~~v~~~~ 393 (405)
T 4b4t_J 387 GKVMNKN 393 (405)
T ss_dssp HHHHHHH
T ss_pred HHHhCcc
Confidence 6665543
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=2.6e-31 Score=281.55 Aligned_cols=324 Identities=21% Similarity=0.257 Sum_probs=210.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+|||||||||||||++|+++|++++. +|+.++++++.++|+|+++ .++++|+.|. ..+||||||||+|
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg~--~~~~v~~~~l~sk~~gese~~lr~lF~~A~---~~~PsIIfIDEiD 307 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDELD 307 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--EEEEEEHHHHHSSCTTHHHHHHHHHHHHHT---TSCSEEEEEESGG
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--eEEEEEhHHhhcccchHHHHHHHHHHHHHH---HcCCeEEEEehhc
Confidence 36678999999999999999999999999996 9999999999999999999 8999999995 4689999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
.|+++|.+.......+.+++++..|+.. .....|+|+++||+++.++++..+++|||+
T Consensus 308 al~~~r~~~~~~~~~riv~~LL~~mdg~---------------------~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~- 365 (806)
T 3cf2_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGL---------------------KQRAHVIVMAATNRPNSIDPALRRFGRFDR- 365 (806)
T ss_dssp GTCCTTTTCCCTTHHHHHHHHHTHHHHC---------------------CGGGCEEEEEECSSTTTSCTTTTSTTSSCE-
T ss_pred ccccccCCCCChHHHHHHHHHHHHHhcc---------------------cccCCEEEEEecCChhhcCHHHhCCcccce-
Confidence 9999987665544455666665544332 222335555666799999999999999995
Q ss_pred ceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHHhhhhhhhh---------------
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLIKSKKTEIT--------------- 218 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~~~~~~~~~--------------- 218 (409)
.+.+|.|+...|.+||+.+... +++.+|..|+| |+|+..+|+.+.........
T Consensus 366 ---~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~ 442 (806)
T 3cf2_A 366 ---EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (806)
T ss_dssp ---EEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHH
T ss_pred ---EEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhh
Confidence 4555556888899999876532 68899999999 99999999654321100000
Q ss_pred ----------------------------------------HHHHHHHHH-------------------------------
Q psy2778 219 ----------------------------------------DKLRKEINK------------------------------- 227 (409)
Q Consensus 219 ----------------------------------------~~~~~~i~~------------------------------- 227 (409)
+.+.+.+..
T Consensus 443 ~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGt 522 (806)
T 3cf2_A 443 NSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 522 (806)
T ss_dssp HHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTS
T ss_pred ccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCC
Confidence 011111111
Q ss_pred ------------------------HHHHHHhhcc----------ccccCCcccccccccccccc--c-----CchhhhHH
Q psy2778 228 ------------------------VVNKYIDQGI----------AELVPGVLFIDEVHMLDLET--F-----MPHLETFT 266 (409)
Q Consensus 228 ------------------------~~~~~~~~~~----------~~~~~gvl~ide~~~l~~~~--~-----~~~~~~~~ 266 (409)
.+.+|.-+.. ....|.|+||||++.+-..- . --..+..+
T Consensus 523 GKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~ 602 (806)
T 3cf2_A 523 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 602 (806)
T ss_dssp SHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHH
T ss_pred CchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHH
Confidence 2333332211 12468899999999874320 0 00123467
Q ss_pred HHHHHhccc--CC-ceEEEecCcceeeecccccCCCCCCCchhhhh--hh-heeecCCCCHHHHHHHHHHHHhhcCCCCC
Q psy2778 267 YLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLD 340 (409)
Q Consensus 267 ~L~~~~e~~--~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~ 340 (409)
.|+..|+.- .. .+|+.+||+ |..+.++++. |+ ..|.++.++.++-.+|++...++..+. +
T Consensus 603 ~lL~~mdg~~~~~~V~vi~aTN~-------------p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~ 668 (806)
T 3cf2_A 603 QILTEMDGMSTKKNVFIIGATNR-------------PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-K 668 (806)
T ss_dssp HHHHHHHSSCSSSSEEEECC-CC-------------SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-C
T ss_pred HHHHHHhCCCCCCCEEEEEeCCC-------------chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-C
Confidence 777777743 22 345556664 5778888886 77 468888999999999998776654332 2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 341 DEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 341 ~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
+.-++.|++.+.+-+...--+++..|...|.
T Consensus 669 ~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp C----------------CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3347888888755566666667777766553
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-31 Score=257.62 Aligned_cols=199 Identities=17% Similarity=0.259 Sum_probs=152.3
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+|||||||||||||++|+|+|++++. +|+.++++++.++|+|+++ .++.+|..|. ..+||||||||+|
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--~fi~v~~s~l~sk~vGesek~ir~lF~~Ar---~~aP~IIfiDEiD 285 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--TFLRIVGSELIQKYLGDGPRLCRQIFKVAG---ENAPSIVFIDEID 285 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--EEEEEESGGGCCSSSSHHHHHHHHHHHHHH---HTCSEEEEEEEES
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCC--CEEEEEHHHhhhccCchHHHHHHHHHHHHH---hcCCcEEEEehhh
Confidence 46778999999999999999999999999996 9999999999999999999 7899999985 4689999999999
Q ss_pred cccccccCCCCCCcc---chhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 83 ELTPVETENPMGGYG---KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+++++|......+.. +.+++++..++ ++....-++|++|||+++.+++++.|+|||
T Consensus 286 ai~~~R~~~~~~~~~~~~~~l~~LL~~lD---------------------g~~~~~~ViVIaATNrpd~LDpALlRpGRf 344 (437)
T 4b4t_I 286 AIGTKRYDSNSGGEREIQRTMLELLNQLD---------------------GFDDRGDVKVIMATNKIETLDPALIRPGRI 344 (437)
T ss_dssp SSSCCCSCSSCSSCCHHHHHHHHHHHHHH---------------------HCCCSSSEEEEEEESCSTTCCTTSSCTTTE
T ss_pred hhcccCCCCCCCccHHHHHHHHHHHHHhh---------------------CcCCCCCEEEEEeCCChhhcCHHHhcCCce
Confidence 999998766544433 23333433332 333334455556667999999999999999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHh----hhhhhh-hHHHHHHH
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIK----SKKTEI-TDKLRKEI 225 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~----~~~~~~-~~~~~~~i 225 (409)
|+ .|.+|.|+...|+.||+.+.. -|++.+|..|+| ||||.++|..+.. .+...+ .+.+.+.+
T Consensus 345 D~----~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 345 DR----KILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp EE----EECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred eE----EEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 95 455555678889999876532 168899999999 9999999976532 222222 34566666
Q ss_pred HHHHHHH
Q psy2778 226 NKVVNKY 232 (409)
Q Consensus 226 ~~~~~~~ 232 (409)
.++....
T Consensus 421 ~rv~~~~ 427 (437)
T 4b4t_I 421 ERVMKNK 427 (437)
T ss_dssp HHHHHHH
T ss_pred HHHhCCC
Confidence 6655544
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-30 Score=259.19 Aligned_cols=177 Identities=16% Similarity=0.213 Sum_probs=141.9
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+|||||||||||||++|+|+|+++++ +|+.++++++.++|+|+++ .++.+|..|. ..+||||||||+|
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--~f~~v~~s~l~~~~vGese~~ir~lF~~A~---~~aP~IifiDEiD 284 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNA--TFLKLAAPQLVQMYIGEGAKLVRDAFALAK---EKAPTIIFIDELD 284 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--EEEEEEGGGGCSSCSSHHHHHHHHHHHHHH---HHCSEEEEEECTH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--CEEEEehhhhhhcccchHHHHHHHHHHHHH---hcCCeEEeecchh
Confidence 47788999999999999999999999999996 9999999999999999999 7899999885 4689999999999
Q ss_pred cccccccCCCCCCcc---chhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 83 ELTPVETENPMGGYG---KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+++++|.+...++.. +.+++++..|+ |+...+.|+|++|||+++.+++++.++|||
T Consensus 285 al~~~R~~~~~~~~~~~~~~~~~lL~~ld---------------------g~~~~~~ViVIaaTNrp~~LD~AllRpGRf 343 (434)
T 4b4t_M 285 AIGTKRFDSEKSGDREVQRTMLELLNQLD---------------------GFSSDDRVKVLAATNRVDVLDPALLRSGRL 343 (434)
T ss_dssp HHHCCCSSGGGGTTHHHHHHHHHHHHHHT---------------------TSCSSCSSEEEEECSSCCCCCTTTCSTTSE
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHHHhh---------------------ccCCCCCEEEEEeCCCchhcCHhHhcCCce
Confidence 999988765544332 23333433332 333334455666667999999999999999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
|+ .+.+|.|+...|..||+.+... +++.+|..|+| ||||.++|..+.
T Consensus 344 D~----~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 344 DR----KIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp EE----EEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred eE----EEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 95 4455555778899988765432 58899999999 999999997654
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=254.48 Aligned_cols=197 Identities=18% Similarity=0.244 Sum_probs=149.5
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+|||||||||||||++|+|+|++++. +|+.++++++.++|+|+++ .++.+|..|. ..+||||||||+|
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--~fi~vs~s~L~sk~vGesek~ir~lF~~Ar---~~aP~IIfiDEiD 312 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDA--TFIRVIGSELVQKYVGEGARMVRELFEMAR---TKKACIIFFDEID 312 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--EEEEEEGGGGCCCSSSHHHHHHHHHHHHHH---HTCSEEEEEECCT
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--CeEEEEhHHhhcccCCHHHHHHHHHHHHHH---hcCCceEeecccc
Confidence 36778999999999999999999999999996 9999999999999999999 7899999995 4689999999999
Q ss_pred cccccccCCCCCCccc---hhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 83 ELTPVETENPMGGYGK---TVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
.++++|.+...+.... .+++++..|+ +......|+|++|||+++.+++++.|+|||
T Consensus 313 ai~~~R~~~~~~~~~~~~~~l~~lL~~lD---------------------g~~~~~~ViVIaATNrpd~LDpALlRpGRF 371 (467)
T 4b4t_H 313 AVGGARFDDGAGGDNEVQRTMLELITQLD---------------------GFDPRGNIKVMFATNRPNTLDPALLRPGRI 371 (467)
T ss_dssp TTSBCCSSSSCGGGGHHHHHHHHHHHHHH---------------------SSCCTTTEEEEEECSCTTSBCHHHHSTTTC
T ss_pred cccccccCcCCCccHHHHHHHHHHHHHhh---------------------ccCCCCcEEEEeCCCCcccCChhhhccccc
Confidence 9999887655433322 2333333332 233334455556667999999999999999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHHh----hhhhhh-hHHHHHHH
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLIK----SKKTEI-TDKLRKEI 225 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~~----~~~~~~-~~~~~~~i 225 (409)
|+ .+.+|.|+...|..||+.+... +++.+|..|+| ||||.++|..+.. .+...+ .+.+.+.+
T Consensus 372 D~----~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 372 DR----KVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAV 447 (467)
T ss_dssp CE----EECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred cE----EEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 95 5555556788899998765321 68899999999 9999999976532 222222 33555566
Q ss_pred HHHHH
Q psy2778 226 NKVVN 230 (409)
Q Consensus 226 ~~~~~ 230 (409)
++++.
T Consensus 448 ~kV~~ 452 (467)
T 4b4t_H 448 DKVIS 452 (467)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=255.71 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=141.7
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..||+|+|||||||||||++|+|+|++++. +|+.++++++.++|+|+++ .++.+|..|. ..+||||||||+|
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~--~~~~v~~s~l~sk~~Gese~~ir~~F~~A~---~~~P~IifiDEiD 284 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA--NFIFSPASGIVDKYIGESARIIREMFAYAK---EHEPCIIFMDEVD 284 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--EEEEEEGGGTCCSSSSHHHHHHHHHHHHHH---HSCSEEEEEECCC
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--CEEEEehhhhccccchHHHHHHHHHHHHHH---hcCCceeeeeccc
Confidence 37788999999999999999999999999996 9999999999999999999 7899999985 4689999999999
Q ss_pred cccccccCCCCCCcc---chhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 83 ELTPVETENPMGGYG---KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+++++|......... +.+++++..|+..+ ..+.+++| +|||+++.+++++.|+|||
T Consensus 285 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------------------~~~~vivI-~ATNrp~~LDpAllRpGRf 343 (437)
T 4b4t_L 285 AIGGRRFSEGTSADREIQRTLMELLTQMDGFD--------------------NLGQTKII-MATNRPDTLDPALLRPGRL 343 (437)
T ss_dssp SSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS--------------------CTTSSEEE-EEESSTTSSCTTTTSTTSE
T ss_pred ccccccccCCCCcchHHHHHHHHHHHHhhccc--------------------CCCCeEEE-EecCCchhhCHHHhCCCcc
Confidence 999988665433322 34444544443322 12344444 5566999999999999999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
|. .|.+|.|+...|..||+.+.. .|++.+|..|+| ||||.++|..+.
T Consensus 344 D~----~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 344 DR----KVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAG 399 (437)
T ss_dssp EE----EECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred ce----eeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 95 555566678889999886543 268899999999 999999997653
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-29 Score=251.54 Aligned_cols=177 Identities=16% Similarity=0.250 Sum_probs=142.5
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+|+|+|||||||||||++|+|+|++++. +|+.++++++.++|+|+++ .++++|..|. ..+|||+||||+|
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~--~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~---~~aP~IifiDEiD 275 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA--AFIRVNGSEFVHKYLGEGPRMVRDVFRLAR---ENAPSIIFIDEVD 275 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC--EEEEEEGGGTCCSSCSHHHHHHHHHHHHHH---HTCSEEEEEECTH
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecchhhccccchhHHHHHHHHHHHH---HcCCCeeechhhh
Confidence 37788999999999999999999999999996 9999999999999999999 8999999995 4689999999999
Q ss_pred cccccccCCCCCCc---cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 83 ELTPVETENPMGGY---GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 83 ~i~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+++++|.+....+. .+.+++++..|+. +....-++|++|||+++.++++..|+|||
T Consensus 276 ~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg---------------------~~~~~~v~vI~aTN~~~~LD~AllRpGRf 334 (428)
T 4b4t_K 276 SIATKRFDAQTGSDREVQRILIELLTQMDG---------------------FDQSTNVKVIMATNRADTLDPALLRPGRL 334 (428)
T ss_dssp HHHCSCSSSCSCCCCHHHHHHHHHHHHHHH---------------------SCSSCSEEEEEEESCSSSCCHHHHSSSSE
T ss_pred hhhccccCCCCCCChHHHHHHHHHHHHhhC---------------------CCCCCCEEEEEecCChhhcChhhhcCCcc
Confidence 99998866543332 2445555444433 33333355556667999999999999999
Q ss_pred cccceeeccCC-CccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 160 DLEAEEYVPLP-KGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 160 d~~~~~~i~~p-~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
|+ .|.+| .|+...|..||+.+.. .|++.+|..|+| ||||.++|+.+.
T Consensus 335 d~----~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~ 391 (428)
T 4b4t_K 335 DR----KIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAG 391 (428)
T ss_dssp EE----EEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred eE----EEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 95 45555 3577888888876532 268899999999 999999997654
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=6.6e-28 Score=255.52 Aligned_cols=179 Identities=19% Similarity=0.312 Sum_probs=125.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.|..+++|+|||||||||||++|+++|.+++. +|+.++++++.++|+|+++ +++++|+.|. ..+||||||||+|
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--~f~~v~~~~l~s~~vGese~~vr~lF~~Ar---~~~P~IifiDEiD 580 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLTMWFGESEANVREIFDKAR---QAAPCVLFFDELD 580 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--EEEECCHHHHHTTTCSSCHHHHHHHHHHHH---TTCSEEEECSCGG
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCC--ceEEeccchhhccccchHHHHHHHHHHHHH---HcCCceeechhhh
Confidence 46778999999999999999999999999996 9999999999999999999 8999999995 4689999999999
Q ss_pred cccccccCCC---CCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 83 ELTPVETENP---MGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 83 ~i~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+++++|.... .+...+.+++++..|+.. ...+.|+|+++||+++.++++..|+|||
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~---------------------~~~~~V~vi~aTN~p~~lD~AllRpgRf 639 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQILTEMDGM---------------------STKKNVFIIGATNRPDIIDPAILRPGRL 639 (806)
T ss_dssp GCC--------------CHHHHHHHHHHHSS---------------------CSSSSEEEECC-CCSSSSCHHHHSTTTS
T ss_pred HHhhccCCCCCCCchHHHHHHHHHHHHHhCC---------------------CCCCCEEEEEeCCCchhCCHhHcCCCcc
Confidence 9999886442 234456777777666543 3334467777778999999999999999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
|.. +++|+| +...|..||+.+.. .|++.+|..++| ||||.++|+.+...
T Consensus 640 d~~--i~v~lP--d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~ 697 (806)
T 3cf2_A 640 DQL--IYIPLP--DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 697 (806)
T ss_dssp CCE--EEC-------CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHH
T ss_pred eEE--EEECCc--CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 964 455555 56668888876642 268899999999 99999999876544
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.89 E-value=1.8e-22 Score=195.00 Aligned_cols=179 Identities=19% Similarity=0.292 Sum_probs=131.9
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccc
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVT 82 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid 82 (409)
.+..+++++|||||||||||++|+++|++++. +|+.++++++.+.++++.+ .++++|..+. ...|++|||||+|
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~---~~~~~vl~iDEid 120 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEANS--TFFSVSSSDLVSKWMGESEKLVKQLFAMAR---ENKPSIIFIDQVD 120 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--EEEEEEHHHHHTTTGGGHHHHHHHHHHHHH---HTSSEEEEEECGG
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--CEEEEchHHHhhcccchHHHHHHHHHHHHH---hcCCeEEEechhh
Confidence 34566799999999999999999999999986 9999999999999999988 7889998885 4589999999999
Q ss_pred cccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 83 ELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
.+.+++.........+....++..+.... -....+++| +|++.+..+++...+ ||+.
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~~v~vi-~atn~~~~ld~al~~--Rf~~- 177 (322)
T 3eie_A 121 ALTGTRGEGESEASRRIKTELLVQMNGVG-------------------NDSQGVLVL-GATNIPWQLDSAIRR--RFER- 177 (322)
T ss_dssp GGSCC------CCTHHHHHHHHHHHGGGG-------------------TSCCCEEEE-EEESCGGGSCHHHHH--HCCE-
T ss_pred hhhccCCCCcchHHHHHHHHHHHHhcccc-------------------ccCCceEEE-EecCChhhCCHHHHc--ccCe-
Confidence 99988765544444444454544333221 123344544 555688888877665 8884
Q ss_pred ceeeccCCCccHHHHHHHHhhc--------CHhhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDV--------TLHDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~--------~~~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.+.+|.|+...|..+++.. +..+++.++..++| |+||..+|+.+....
T Consensus 178 ---~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 178 ---RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp ---EEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred ---EEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4455555777788888753 34478899999999 999999998776554
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=195.56 Aligned_cols=177 Identities=20% Similarity=0.308 Sum_probs=132.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
..+++++|||||||||||++|+++|+++ +. +|+.++++++.+.|+|+++ .++.+|..+. ..+|++|||||+|.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~---~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSSDLVSKWLGESEKLVKNLFQLAR---ENKPSIIFIDEIDS 116 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECCSSCCSSCCSCHHHHHHHHHHHH---HTSSEEEEEETTTG
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhHHHHhhhhhHHHHHHHHHHHHHH---hcCCcEEEeecHHH
Confidence 4567999999999999999999999999 54 9999999999999999988 7888888875 35799999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+++++.........+.+++++..++... .....+++|++| +.++.+++...+ ||+.
T Consensus 117 l~~~~~~~~~~~~~~~~~~ll~~ld~~~-------------------~~~~~v~vI~at-n~~~~ld~al~r--Rf~~-- 172 (322)
T 1xwi_A 117 LCGSRSENESEAARRIKTEFLVQMQGVG-------------------VDNDGILVLGAT-NIPWVLDSAIRR--RFEK-- 172 (322)
T ss_dssp GGCCSSSCCTTHHHHHHHHHHHHHHCSS-------------------SCCTTEEEEEEE-SCTTTSCHHHHH--TCCE--
T ss_pred hccccccccchHHHHHHHHHHHHHhccc-------------------ccCCCEEEEEec-CCcccCCHHHHh--hcCe--
Confidence 9988765543333344444433332211 123455555555 577888876655 8884
Q ss_pred eeeccCCCccHHHHHHHHhhc--------CHhhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDV--------TLHDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~--------~~~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.+.+|.|+...|..+++.+ +..+++.++..++| |+|+..+|..+....
T Consensus 173 --~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 173 --RIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp --EEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred --EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4444555667788877653 33478899999999 999999998876553
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=188.88 Aligned_cols=178 Identities=20% Similarity=0.307 Sum_probs=131.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+...++|++|+||||||||++++++|.+++. +++.+++.++.+.+.++.+ .+..+|+.+. ...|+++|+||+|.
T Consensus 40 ~l~~~~GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~---~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 40 GLVTPAGVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK---NSAPCVIFFDEVDA 114 (274)
T ss_dssp TCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH---HTCSEEEEEETCTT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH---hcCCCeEeeehhhh
Confidence 4456788999999999999999999999986 8999999999999999887 7888888874 35799999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+.+.+.........+.+++++..|. |......+++.++++.+..++++..+++|||.
T Consensus 115 ~~~~r~~~~~~~~~~~~~~~l~~Ls---------------------gg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~-- 171 (274)
T 2x8a_A 115 LCPRRSDRETGASVRVVNQLLTEMD---------------------GLEARQQVFIMAATNRPDIIDPAILRPGRLDK-- 171 (274)
T ss_dssp TCC---------CTTHHHHHHHHHH---------------------TCCSTTCEEEEEEESCGGGSCHHHHSTTSSCE--
T ss_pred hhcccCCCcchHHHHHHHHHHHhhh---------------------cccccCCEEEEeecCChhhCCHhhcCcccCCe--
Confidence 8876543222222233333322222 33445667777777899999999999999995
Q ss_pred eeeccCCCccHHHHHHHHhhcCH----------hhHHHhhcCCC--C--hHHHHHHHHHHHhh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTL----------HDLDMANAKPQ--G--GQDILSMVGQLIKS 212 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~----------~dl~~~a~~~~--g--gadi~~l~~~~~~~ 212 (409)
.+.+|.|+...|..+++.+.. .+++.++..+. | ||||.++|+.+...
T Consensus 172 --~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~ 232 (274)
T 2x8a_A 172 --TLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232 (274)
T ss_dssp --EEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHH
T ss_pred --EEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHH
Confidence 444555577789998876542 15778888754 8 99999999876543
No 14
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.88 E-value=4.5e-22 Score=198.11 Aligned_cols=336 Identities=17% Similarity=0.171 Sum_probs=155.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh-hhhhh-hH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS-SEIKK-TE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~-~~~~~-~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
.+++|+||+||||||||++|+++|+.++. +|+.++++.+.+ .|+|+ .+ .+++.|..+.. ++++||++.
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~--~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~-------~~~~De~d~ 118 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK-------LVRQQEIAK 118 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCCTHHHHHHHHHHHHH-------HHHHHHHHS
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCC--CceeecchhhcccceeeccHHHHHHHHHHHHHh-------cchhhhhhh
Confidence 46789999999999999999999999986 999999999888 59995 56 67888887753 345899888
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+... .......+.+++++..|+... ....+ +.++||+++.+++++.+++|||+++
T Consensus 119 ~~~~---~~~~~e~rvl~~LL~~~dg~~---------------------~~~~v-~a~~TN~~~~ld~aL~rggr~D~~i 173 (444)
T 1g41_A 119 NRAR---AEDVAEERILDALLPPAKNQW---------------------GEVEN-HDSHSSTRQAFRKKLREGQLDDKEI 173 (444)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhcc---chhhHHHHHHHHHHHHhhccc---------------------ccccc-ccccccCHHHHHHHHHcCCCcceEE
Confidence 7432 222333455555544433221 11112 3443789999999999999999875
Q ss_pred eeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHH------------HHH--HHHH
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLR------------KEI--NKVV 229 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~------------~~i--~~~~ 229 (409)
++.+|...+ .|.+++..-...++ |.++..++..++..+...-.-.+. .++ +.+.
T Consensus 174 ~i~lP~~~~---~~~ei~~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~ 241 (444)
T 1g41_A 174 EIDVSAGVS---MGVEIMAPPGMEEM---------TNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELK 241 (444)
T ss_dssp ----------------------------------------------------------------CCGGGSCSSCCHHHHH
T ss_pred EEcCCCCcc---chhhhhcCCChHHH---------HHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHH
Confidence 444443321 24444432111100 112222222222111100000000 000 0011
Q ss_pred HHHHhhccccccCCcccccccccccccc--cC--chhh-hHHHHHHHhcc----------cCCceEEEecCcceeeeccc
Q psy2778 230 NKYIDQGIAELVPGVLFIDEVHMLDLET--FM--PHLE-TFTYLHRALES----------AIAPIVIFATNRGRCLVRGT 294 (409)
Q Consensus 230 ~~~~~~~~~~~~~gvl~ide~~~l~~~~--~~--~~~~-~~~~L~~~~e~----------~~~~~~i~~~~~~~~~~~~~ 294 (409)
.+-++.. -..|++|+||++.+...+ .. +.-| .+..|++.||. ..+.++++++. ..
T Consensus 242 ~~ai~~a---e~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~g-------af 311 (444)
T 1g41_A 242 QKAIDAV---EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG-------AF 311 (444)
T ss_dssp HHHHHHH---HHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE-------CC
T ss_pred HHHHHHh---ccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecc-------cc
Confidence 1111111 012799999999886531 11 1111 46799999996 24444444441 01
Q ss_pred ccCCCCCCCchhhhhhhhe-eecCCCCHHHHHHHHHH-----------HH--hhcCCCCCHHHHHHHHHhc-------CC
Q psy2778 295 DDIISPHGIPLDLLDRLLI-IRTTPYNQKDMEAIIKL-----------RA--NTEGHVLDDEALVTLSEIG-------TR 353 (409)
Q Consensus 295 ~~~~~~~~~~~~l~~r~~~-i~~~~~~~~e~~~il~~-----------~~--~~~~~~i~~~~l~~I~~~s-------~~ 353 (409)
...+ |..+.++|++|+-+ +.+++|+.+|+.+|+.. .. ....+.++++++..|++.+ .+
T Consensus 312 ~~~~-~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~ 390 (444)
T 1g41_A 312 QVAR-PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN 390 (444)
T ss_dssp SSCC-GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred ccCC-hhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCcc
Confidence 0112 33455789999976 89999999999999941 11 1224689999999999864 35
Q ss_pred ccHHHHHHHHHHHHHHHHHh-----C-CCCccHHHHHHHHHhccChHHHHHH
Q psy2778 354 STLRYVVQLLTPAALTAKTN-----G-RTAISKQDILEVSTLFLDAKSSARI 399 (409)
Q Consensus 354 g~~R~al~ll~~~~~~a~~~-----~-~~~I~~~~v~~~~~~~~~~~~~~~~ 399 (409)
+++|..-++++.+...+..+ + .-.|+.+.|...++-.....-..||
T Consensus 391 ~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~dl~~~ 442 (444)
T 1g41_A 391 IGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRF 442 (444)
T ss_dssp CGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccccCCChhcc
Confidence 78999888888776543211 1 2358999998877544333333333
No 15
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.88 E-value=1.1e-22 Score=204.51 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=107.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQK 322 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~ 322 (409)
+++||||+|.++.. .++.|++.+|+ ...++|++| +.++.+.+++++++||.++.+++++.+
T Consensus 108 ~iLfIDEI~~l~~~-------~q~~LL~~le~-~~v~lI~at-----------t~n~~~~l~~aL~sR~~v~~l~~l~~e 168 (447)
T 3pvs_A 108 TILFVDEVHRFNKS-------QQDAFLPHIED-GTITFIGAT-----------TENPSFELNSALLSRARVYLLKSLSTE 168 (447)
T ss_dssp EEEEEETTTCC-------------CCHHHHHT-TSCEEEEEE-----------SSCGGGSSCHHHHTTEEEEECCCCCHH
T ss_pred cEEEEeChhhhCHH-------HHHHHHHHHhc-CceEEEecC-----------CCCcccccCHHHhCceeEEeeCCcCHH
Confidence 57777777777776 67777788886 335566666 345667889999999999999999999
Q ss_pred HHHHHHHHHHhh-------cCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh--CCCCccHHHHHHHHHhccCh
Q psy2778 323 DMEAIIKLRANT-------EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTN--GRTAISKQDILEVSTLFLDA 393 (409)
Q Consensus 323 e~~~il~~~~~~-------~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~--~~~~I~~~~v~~~~~~~~~~ 393 (409)
++.++++..+.+ .++.++++++++|++.+ .||+|.++++|+.+...+... +...||.++|.++++
T Consensus 169 di~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~-~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~----- 242 (447)
T 3pvs_A 169 DIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELV-NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG----- 242 (447)
T ss_dssp HHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHH-CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh-----
Confidence 999999998876 66889999999999998 999999999999999887533 446799999999987
Q ss_pred HHHHHHHHHhhhhh
Q psy2778 394 KSSARILTENKDKF 407 (409)
Q Consensus 394 ~~~~~~~~~~~~~~ 407 (409)
+...+|++.++.||
T Consensus 243 ~~~~~~dk~gd~~y 256 (447)
T 3pvs_A 243 ERSARFDNKGDRFY 256 (447)
T ss_dssp CCCCC---CCHHHH
T ss_pred hhhhccCCccchHH
Confidence 34455666666666
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.87 E-value=1.1e-21 Score=187.87 Aligned_cols=178 Identities=18% Similarity=0.288 Sum_probs=133.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+++++||+||||||||++|+++|++++. +|+.++++++.+.++|+++ .++..|..+.. ..|++||+||+|.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~--~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~---~~p~il~iDEid~ 119 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLTMWFGESEANVREIFDKARQ---AAPCVLFFDELDS 119 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--EEEEECHHHHHHHHHTTCTTHHHHHHHHHHH---TCSEEEEECSTTH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhCC--CEEEEEhHHHHhhhcCchHHHHHHHHHHHHh---cCCeEEEEEChHH
Confidence 5567899999999999999999999999985 9999999999999999988 78899998853 5799999999999
Q ss_pred ccccccCCCC---CCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 84 LTPVETENPM---GGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 84 i~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+.+.+..... +...+.+.+++..++... ...++++| ++++.++.+++...+++||+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--------------------~~~~v~vi-~atn~~~~ld~al~r~gRf~ 178 (301)
T 3cf0_A 120 IAKARGGNIGDGGGAADRVINQILTEMDGMS--------------------TKKNVFII-GATNRPDIIDPAILRPGRLD 178 (301)
T ss_dssp HHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--------------------TTSSEEEE-EEESCGGGSCGGGGSTTSSC
T ss_pred HhhccCCCcCCcchHHHHHHHHHHHHhhccc--------------------CCCCEEEE-EecCCccccChHHhcCCccc
Confidence 9887654321 122334444433332111 12345554 55568888899888899999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
. .+.+|.|+.+.|..+++.... .+++.++..++| |+|+.++|..+...
T Consensus 179 ~----~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 179 Q----LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 235 (301)
T ss_dssp E----EEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred e----EEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4 455555677778888865431 257788999999 99999999877644
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.86 E-value=1.1e-21 Score=191.99 Aligned_cols=178 Identities=19% Similarity=0.293 Sum_probs=123.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+..+++++|||||||||||++|+++|++++. +|+.++++++.+.+.++.+ .++.+|..+. ...|+||||||+|.
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~--~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~---~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANS--TFFSVSSSDLVSKWMGESEKLVKQLFAMAR---ENKPSIIFIDQVDA 154 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC--EEEEEEHHHHHSCC---CHHHHHHHHHHHH---HTSSEEEEEECGGG
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEEEeeHHHHhhhhcchHHHHHHHHHHHHH---HcCCeEEEEechHh
Confidence 4456789999999999999999999999986 9999999999999999988 6788888874 35799999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+.+.+.........+...+++..|+... -....+++| ++++.+..+++...+ ||+.
T Consensus 155 l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~~v~vI-~atn~~~~ld~al~r--Rf~~-- 210 (355)
T 2qp9_X 155 LTGTRGEGESEASRRIKTELLVQMNGVG-------------------NDSQGVLVL-GATNIPWQLDSAIRR--RFER-- 210 (355)
T ss_dssp GTC------CTHHHHHHHHHHHHHHHCC----------------------CCEEEE-EEESCGGGSCHHHHH--TCCE--
T ss_pred hcccCCCCcchHHHHHHHHHHHHhhccc-------------------ccCCCeEEE-eecCCcccCCHHHHc--ccCE--
Confidence 9887654433222333444433332111 112345555 455578788876655 8884
Q ss_pred eeeccCCCccHHHHHHHHhhc--------CHhhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDV--------TLHDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~--------~~~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.+.+|.|+...|..+++.. +..+++.++..++| |+||..+|..+....
T Consensus 211 --~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 211 --RIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp --EEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred --EEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4445555777788887653 34478899999999 999999998776543
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.86 E-value=2.9e-21 Score=194.51 Aligned_cols=177 Identities=20% Similarity=0.314 Sum_probs=123.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
..+++++|||||||||||++|+++|+++ +. +|+.++++++.+.|+|+++ .++.+|..+. ...|+||||||+|.
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~--~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~---~~~~~vl~iDEid~ 238 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSSDLVSKWLGESEKLVKNLFQLAR---ENKPSIIFIDEIDS 238 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSS--EEEEECCC---------CCCTHHHHHHHHH---HSCSEEEEESCTTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCC--CEEEEeHHHHHhhhcchHHHHHHHHHHHHH---HcCCeEEEEechHh
Confidence 4567999999999999999999999999 54 9999999999999999988 7888898875 35799999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+++.+.........+.+++++..++... .....+++|++| +.++.+++...+ ||+.
T Consensus 239 l~~~~~~~~~~~~~~~~~~lL~~l~~~~-------------------~~~~~v~vI~at-n~~~~ld~al~r--Rf~~-- 294 (444)
T 2zan_A 239 LCGSRSENESEAARRIKTEFLVQMQGVG-------------------VDNDGILVLGAT-NIPWVLDSAIRR--RFEK-- 294 (444)
T ss_dssp TCCCSSCCCCGGGHHHHHHHHTTTTCSS-------------------CCCSSCEEEEEE-SCGGGSCHHHHT--TCCE--
T ss_pred hccCCCCccccHHHHHHHHHHHHHhCcc-------------------cCCCCEEEEecC-CCccccCHHHHh--hcce--
Confidence 9988765543333344444433332111 123455555555 577888876655 8884
Q ss_pred eeeccCCCccHHHHHHHHhhc--------CHhhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDV--------TLHDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~--------~~~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.+.+|.|+...|..+++.+ +..+++.++..+.| |+||..+|..+....
T Consensus 295 --~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 295 --RIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp --EEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred --EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4445555667788877654 33478899999999 999999998876543
No 19
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.86 E-value=3.4e-21 Score=194.28 Aligned_cols=176 Identities=20% Similarity=0.304 Sum_probs=128.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|...|+++||+||||||||++|+++|++++. +|+.++++++...++|..+ +++..|..+. ...|+||||||+|.
T Consensus 45 g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~f~~is~~~~~~~~~g~~~~~~r~lf~~A~---~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 45 GARMPKGILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDFVELFVGVGAARVRDLFAQAK---AHAPCIVFIDEIDA 119 (476)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGTTTCCTTHHHHHHHHHHHHHH---HTCSEEEEEETGGG
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHHHHHHHhcccHHHHHHHHHHHH---hcCCCEEEEechhh
Confidence 3445789999999999999999999999985 9999999999998888877 7888999885 35799999999999
Q ss_pred ccccccCCCCCCc---cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 84 LTPVETENPMGGY---GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 84 i~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+.++++....+.. .+.+++++..++... ....+++|++| +.+..+++...+++|||
T Consensus 120 l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------------------~~~~viVIaaT-n~~~~Ld~allR~gRFd 178 (476)
T 2ce7_A 120 VGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------------------SKEGIIVMAAT-NRPDILDPALLRPGRFD 178 (476)
T ss_dssp TCCC---------CHHHHHHHHHHHHHHHSC--------------------GGGTEEEEEEE-SCGGGSCGGGGSTTSSC
T ss_pred hhhhcccccCcCcHHHHHHHHHHHHHHhccC--------------------CCCCEEEEEec-CChhhhchhhcccCcce
Confidence 9887754322221 133444433332111 12345555554 57888899999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
+ .+.++.|+.+.|..|++.+.. .+++.++..+.| |+|+.++|+.+.
T Consensus 179 ~----~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 179 K----KIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp E----EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred e----EeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 5 455566688888888865421 157889999999 899999997654
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=4.5e-21 Score=205.96 Aligned_cols=174 Identities=24% Similarity=0.327 Sum_probs=129.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+..++.++||+||||||||++|+++|++++. +++.++++++.+.+.++.+ .+..+|+.+. ...|+++|+||+|.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~---~~~p~il~iDEid~ 308 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDELDA 308 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--EEEEEEHHHHSSSSTTHHHHHHHHHHHHHH---HHCSEEEEEESGGG
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--cEEEEEchHhhhhhhhhHHHHHHHHHHHHH---hcCCcEEEeccHHH
Confidence 4567889999999999999999999999986 8999999999999999888 7888998885 35799999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccc-cCcEEEEEcccccccccCcccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVE-VGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~-~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
+++.+.........+.+.+++..+. +.. ...+++|. +++.+..+++...+.+||+.
T Consensus 309 l~~~~~~~~~~~~~~~~~~Ll~ll~---------------------g~~~~~~v~vI~-atn~~~~ld~al~r~gRf~~- 365 (806)
T 1ypw_A 309 IAPKREKTHGEVERRIVSQLLTLMD---------------------GLKQRAHVIVMA-ATNRPNSIDPALRRFGRFDR- 365 (806)
T ss_dssp TSCTTSCCCSHHHHHHHHHHHHHHH---------------------SSCTTSCCEEEE-ECSCTTTSCTTTTSTTSSCE-
T ss_pred hhhccccccchHHHHHHHHHHHHhh---------------------hhcccccEEEec-ccCCchhcCHHHhccccccc-
Confidence 9887654322111222222222221 222 23455554 44577888888888899994
Q ss_pred ceeeccCCCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHH
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQL 209 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~ 209 (409)
.+.++.++...|.++++.+... ++..++..++| ++++..+|..+
T Consensus 366 ---~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea 418 (806)
T 1ypw_A 366 ---EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp ---EECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ---ccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHH
Confidence 4556666778888888765432 57788999999 99999887544
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.84 E-value=1.3e-20 Score=191.39 Aligned_cols=178 Identities=24% Similarity=0.305 Sum_probs=134.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+++++|||||||||||++|+++|++++. +|+.++++++.+.+.|+.+ .++.+|..+.. ..|++|||||+|.
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~---~~p~iLfLDEId~ 308 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESESNLRKAFEEAEK---NAPAIIFIDELDA 308 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHCSS--EEEEEEHHHHHTSCTTHHHHHHHHHHHHHHH---TCSEEEEEESHHH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHhCC--CEEEEEchHhhhhhcchhHHHHHHHHHHHHh---cCCcEEEecchhh
Confidence 4566789999999999999999999999985 9999999999999999988 78999998853 5799999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
+.+++.........+.+..++..|... -...++++|++| +.+..+++...+++||+.
T Consensus 309 l~~~~~~~~~~~~~~~~~~LL~~ld~~--------------------~~~~~v~vIaaT-n~~~~Ld~al~r~gRf~~-- 365 (489)
T 3hu3_A 309 IAPKREKTHGEVERRIVSQLLTLMDGL--------------------KQRAHVIVMAAT-NRPNSIDPALRRFGRFDR-- 365 (489)
T ss_dssp HCBCTTSCCCHHHHHHHHHHHHHHHHS--------------------CTTSCEEEEEEE-SCGGGBCGGGGSTTSSCE--
T ss_pred hccccccccchHHHHHHHHHHHHhhcc--------------------ccCCceEEEEec-CCccccCHHHhCCCcCce--
Confidence 998775433222223333333322211 123455555555 577888888888899995
Q ss_pred eeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
.+.++.|+.+.|.++++.... .+++.++..+.| |+|+..+|..+...
T Consensus 366 --~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~ 421 (489)
T 3hu3_A 366 --EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (489)
T ss_dssp --EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred --EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 455666678889998886543 257889999999 99999999766544
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=2.8e-20 Score=176.03 Aligned_cols=179 Identities=22% Similarity=0.318 Sum_probs=131.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+++++||+||||||||++|+++|++++. +++.++++++.+.+.+..+ .+...|..+. ...|++|||||+|.
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNA--TFIRVVGSELVKKFIGEGASLVKDIFKLAK---EKAPSIIFIDEIDA 121 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTTC--EEEEEEGGGGCCCSTTHHHHHHHHHHHHHH---HTCSEEEEEETTHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--CEEEEehHHHHHhccchHHHHHHHHHHHHH---HcCCeEEEEECHHH
Confidence 3456789999999999999999999999986 9999999999999999887 6788888775 35789999999999
Q ss_pred ccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhcccc-CcEEEEEcccccccccCcccccccccccc
Q psy2778 84 LTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEV-GDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~-~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
+.+++.+...++.......+...+... .+... +.+++| +|++.+..+++...+++||+.
T Consensus 122 l~~~~~~~~~~~~~~~~~~l~~ll~~~------------------~~~~~~~~~~vI-~ttn~~~~l~~~l~~~~Rf~~- 181 (285)
T 3h4m_A 122 IAAKRTDALTGGDREVQRTLMQLLAEM------------------DGFDARGDVKII-GATNRPDILDPAILRPGRFDR- 181 (285)
T ss_dssp HHBCCSSSCCGGGGHHHHHHHHHHHHH------------------HTTCSSSSEEEE-EECSCGGGBCHHHHSTTSEEE-
T ss_pred hcccCccccCCccHHHHHHHHHHHHHh------------------hCCCCCCCEEEE-EeCCCchhcCHHHcCCCcCCe-
Confidence 988776554333322222221111111 12222 344444 555678888888888889984
Q ss_pred ceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHh
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIK 211 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~ 211 (409)
.+.+|.++...|..+++.... .++..++..+.| |+|+..+|..+..
T Consensus 182 ---~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 236 (285)
T 3h4m_A 182 ---IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGM 236 (285)
T ss_dssp ---EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred ---EEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 566666677888888865422 257888999999 9999999976653
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.83 E-value=8.5e-20 Score=170.31 Aligned_cols=178 Identities=18% Similarity=0.242 Sum_probs=118.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+++++||+||||||||++|+++|++++. +++.++++++.+.+.+..+ .+...|..+.. ..|++|||||+|.
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~vl~iDeid~ 109 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQV--PFLAMAGAEFVEVIGGLGAARVRSLFKEARA---RAPCIVYIDEIDA 109 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--CEEEEETTTTSSSSTTHHHHHHHHHHHHHHH---TCSEEEEEECC--
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHhhccChhHHHHHHHHHHHHh---cCCeEEEEeCcch
Confidence 4456789999999999999999999999986 9999999999888888777 67888888753 4689999999999
Q ss_pred ccccccCCCCC----CccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 84 LTPVETENPMG----GYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 84 i~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+.+++...... .....+..++..+. +......+++++|++.+..+++...+++||
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~ 168 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTLNQLLVEMD---------------------GMGTTDHVIVLASTNRADILDGALMRPGRL 168 (262)
T ss_dssp -----------------CHHHHHHHHHHH---------------------TCCTTCCEEEEEEESCGGGGGSGGGSTTSC
T ss_pred hhccccccccCccchhHHHHHHHHHHHhh---------------------CcCCCCCEEEEecCCChhhcCHHHhcCCcC
Confidence 98776443211 11122222222111 122223344445556788888888888999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCHh---------hHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTLH---------DLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~~---------dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
+. .+.++.|+...|..+++..... .++.++..+.| |+|+..+|..+...
T Consensus 169 ~~----~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 169 DR----HVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALH 228 (262)
T ss_dssp CE----EEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC
T ss_pred Ce----EEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 84 4445555777788887654321 24678889998 88999999776544
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.82 E-value=7e-19 Score=174.23 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=137.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELT 85 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~ 85 (409)
.+++++||+||||||||++|+++|++++. +|+.++++++.+.+.++.+ .+..+|..+. ...|++|||||+|.+.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~--~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~---~~~~~il~iDEid~l~ 220 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNA--TFFNISAASLTSKYVGEGEKLVRALFAVAR---ELQPSIIFIDQVDSLL 220 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTC--EEEEECSCCC-------CHHHHHHHHHHHH---HSSSEEEEEETGGGGC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcC--cEEEeeHHHhhccccchHHHHHHHHHHHHH---hcCCeEEEEECchhhc
Confidence 35689999999999999999999999986 9999999999999999988 6788888875 3578999999999996
Q ss_pred ccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccccee
Q psy2778 86 PVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAEE 165 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~~ 165 (409)
..+.........+
T Consensus 221 ~~~~~~~~~~~~~------------------------------------------------------------------- 233 (389)
T 3vfd_A 221 CERREGEHDASRR------------------------------------------------------------------- 233 (389)
T ss_dssp --------CTHHH-------------------------------------------------------------------
T ss_pred ccCCCccchHHHH-------------------------------------------------------------------
Confidence 6543211000000
Q ss_pred eccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhccccccCCcc
Q psy2778 166 YVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAELVPGVL 245 (409)
Q Consensus 166 ~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~gvl 245 (409)
T Consensus 234 -------------------------------------------------------------------------------- 233 (389)
T 3vfd_A 234 -------------------------------------------------------------------------------- 233 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCchhhhHHHHHHHhc----cc-CCceEEEecCcceeeecccccCCCCCCCchhhhhhhh-eeecCCC
Q psy2778 246 FIDEVHMLDLETFMPHLETFTYLHRALE----SA-IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTTPY 319 (409)
Q Consensus 246 ~ide~~~l~~~~~~~~~~~~~~L~~~~e----~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~~ 319 (409)
.+..|.+.++ .. ...+||.+||. +..+++.+++||. .+.+.++
T Consensus 234 ------------------~~~~ll~~l~~~~~~~~~~v~vI~atn~-------------~~~l~~~l~~R~~~~i~i~~p 282 (389)
T 3vfd_A 234 ------------------LKTEFLIEFDGVQSAGDDRVLVMGATNR-------------PQELDEAVLRRFIKRVYVSLP 282 (389)
T ss_dssp ------------------HHHHHHHHHHHHC-----CEEEEEEESC-------------GGGCCHHHHTTCCEEEECCCC
T ss_pred ------------------HHHHHHHHhhcccccCCCCEEEEEecCC-------------chhcCHHHHcCcceEEEcCCc
Confidence 1111111111 11 22345556653 4567788999995 7999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHh------------CCCCccHHHHHHH
Q psy2778 320 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVV-QLLTPAALTAKTN------------GRTAISKQDILEV 386 (409)
Q Consensus 320 ~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al-~ll~~~~~~a~~~------------~~~~I~~~~v~~~ 386 (409)
+.++..++++..+...+..++++.+..|++.+ .|..+.++ .++..+...+..+ +...|+.+|+..+
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~-~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~a 361 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMT-DGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTES 361 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHH
Confidence 99999999999999999999999999999999 66555444 5555555444332 2347999999888
Q ss_pred HHhc
Q psy2778 387 STLF 390 (409)
Q Consensus 387 ~~~~ 390 (409)
+.-.
T Consensus 362 l~~~ 365 (389)
T 3vfd_A 362 LKKI 365 (389)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 8643
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=4.5e-19 Score=168.87 Aligned_cols=199 Identities=23% Similarity=0.259 Sum_probs=144.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~~ 86 (409)
+++++||+||||||||++|+++|++++. +|+.++++++.+.+.+..+ .++..|..+. ...|++||+||+|.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA--TFLNISAASLTSKYVGDGEKLVRALFAVAR---HMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC--EEEEEESTTTSSSSCSCHHHHHHHHHHHHH---HTCSEEEEEETGGGTSB
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC--CeEEeeHHHHhhcccchHHHHHHHHHHHHH---HcCCcEEEeccHHHhcc
Confidence 5789999999999999999999999985 9999999999999988877 6677787774 35799999999999976
Q ss_pred cccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccceee
Q psy2778 87 VETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAEEY 166 (409)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~~~ 166 (409)
.+.........+
T Consensus 128 ~~~~~~~~~~~~-------------------------------------------------------------------- 139 (297)
T 3b9p_A 128 ERSSSEHEASRR-------------------------------------------------------------------- 139 (297)
T ss_dssp CC-----CCSHH--------------------------------------------------------------------
T ss_pred ccccCcchHHHH--------------------------------------------------------------------
Confidence 543211000000
Q ss_pred ccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhccccccCCccc
Q psy2778 167 VPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAELVPGVLF 246 (409)
Q Consensus 167 i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~gvl~ 246 (409)
T Consensus 140 -------------------------------------------------------------------------------- 139 (297)
T 3b9p_A 140 -------------------------------------------------------------------------------- 139 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCchhhhHHHHHHHhccc------CCceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCC
Q psy2778 247 IDEVHMLDLETFMPHLETFTYLHRALESA------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPY 319 (409)
Q Consensus 247 ide~~~l~~~~~~~~~~~~~~L~~~~e~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~ 319 (409)
..+.|...++.. ...+++.+||. +..+++.+++|| ..+.++.+
T Consensus 140 -----------------~~~~ll~~l~~~~~~~~~~~v~vi~~tn~-------------~~~l~~~l~~R~~~~i~~~~p 189 (297)
T 3b9p_A 140 -----------------LKTEFLVEFDGLPGNPDGDRIVVLAATNR-------------PQELDEAALRRFTKRVYVSLP 189 (297)
T ss_dssp -----------------HHHHHHHHHHHCC------CEEEEEEESC-------------GGGBCHHHHHHCCEEEECCCC
T ss_pred -----------------HHHHHHHHHhcccccCCCCcEEEEeecCC-------------hhhCCHHHHhhCCeEEEeCCc
Confidence 001111111110 12345556653 345677899999 57889999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHhC------------CCCccHHHHHHH
Q psy2778 320 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVV-QLLTPAALTAKTNG------------RTAISKQDILEV 386 (409)
Q Consensus 320 ~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al-~ll~~~~~~a~~~~------------~~~I~~~~v~~~ 386 (409)
+.++..++++..+.+.+.+++++.++.|++.+ .|..+.++ ++++.+...+..+. ...|+.+|+..+
T Consensus 190 ~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~-~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a 268 (297)
T 3b9p_A 190 DEQTRELLLNRLLQKQGSPLDTEALRRLAKIT-DGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSS 268 (297)
T ss_dssp CHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHH
Confidence 99999999999999889999999999999999 66655555 67776665554332 247999999988
Q ss_pred HHhc
Q psy2778 387 STLF 390 (409)
Q Consensus 387 ~~~~ 390 (409)
+.-.
T Consensus 269 ~~~~ 272 (297)
T 3b9p_A 269 LKRI 272 (297)
T ss_dssp TTSC
T ss_pred HHHc
Confidence 7654
No 26
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.82 E-value=1.2e-19 Score=169.46 Aligned_cols=176 Identities=21% Similarity=0.300 Sum_probs=126.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|...++++||+||||||||++|+++|++++. +++.++++++.+.+.+..+ .+...|+.+. ...|+++|+||+|.
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~il~iDeid~ 115 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDFVEMFVGVGASRVRDMFEQAK---KAAPCIIFIDEIDA 115 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSSTTSCCCCCHHHHHHHHHHHH---TTCSEEEEETTHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--CEEEEeHHHHHHHhhhhhHHHHHHHHHHHH---HcCCeeehhhhhhh
Confidence 3345789999999999999999999999985 8999999999988888877 7788888875 34689999999999
Q ss_pred ccccccCCCCCCcc---chhhhHHHhhhcccCcccccCChHHHHHHhhhccc-cCcEEEEEcccccccccCccccccccc
Q psy2778 84 LTPVETENPMGGYG---KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVE-VGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 84 i~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~-~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+.+.+.....++.. +.+..++..+. ++. ..++++| ++++.+..+++...+++||
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~ll~~l~---------------------~~~~~~~~~vI-~~tn~~~~l~~~l~r~~rf 173 (257)
T 1lv7_A 116 VGRQRGAGLGGGHDEREQTLNQMLVEMD---------------------GFEGNEGIIVI-AATNRPDVLDPALLRPGRF 173 (257)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHH---------------------TCCSSSCEEEE-EEESCTTTSCGGGGSTTSS
T ss_pred hccCCCCCcCCCchHHHHHHHHHHHHhh---------------------CcccCCCEEEE-EeeCCchhCCHHHcCCCcC
Confidence 98876543322211 22333322222 122 2344555 5555778888888888999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHh
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIK 211 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~ 211 (409)
++ .+.++.|+.+.|..+++.... .++..++..+.| ++|+.++|..+..
T Consensus 174 ~~----~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 230 (257)
T 1lv7_A 174 DR----QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 230 (257)
T ss_dssp CE----EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred Ce----EEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 95 444555567778888765421 146778889998 9999999977653
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.82 E-value=2.3e-20 Score=177.92 Aligned_cols=163 Identities=11% Similarity=0.028 Sum_probs=99.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhh-hhcccceEEecccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGL-RIKESKEVYEGEVT 82 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~-~~~~~~ii~iDEid 82 (409)
+..+|+++|||||||||||++|+++|++++. +|+.++++++.+.++|..+ .+++.|+.+... +...|+||||||+|
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~--~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC--CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 4556799999999999999999999999986 9999999999999999988 788999888422 34579999999999
Q ss_pred cccccccCCCC-CCcc-chhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 83 ELTPVETENPM-GGYG-KTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 83 ~i~~~~~~~~~-~~~~-~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
.+.+.+.+... .... ...+.++..|+...... ++ .. .......++ +|++|+|.+..+++...+++|||
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~---~~-----~~-~~~~~~~~v-~vI~ttN~~~~ld~al~R~~R~d 179 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ---LP-----GM-YNKQENARV-PIIVTGNDFSTLYAPLIRDGRME 179 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC--------------------CCCCC-CEEEECSSCCC--CHHHHHHHEE
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccc---cc-----cc-cccccCCCc-EEEEecCCcccCCHHHhCCCCCc
Confidence 99886543221 1112 22244433333111000 00 00 000122344 44555568888999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcC
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVT 185 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~ 185 (409)
..+ .+| +...|..|++.+.
T Consensus 180 ~~i----~~P--~~~~r~~Il~~~~ 198 (293)
T 3t15_A 180 KFY----WAP--TREDRIGVCTGIF 198 (293)
T ss_dssp EEE----ECC--CHHHHHHHHHHHH
T ss_pred eeE----eCc--CHHHHHHHHHHhc
Confidence 643 345 7777888887553
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=1e-19 Score=174.17 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=136.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC-----CccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN-----KVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGE 80 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~-----~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDE 80 (409)
.++.++||+||||||||++|+++|+.++. ..+++.++++++.+.+.+... .+...|+.+ .+++|||||
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~------~~~vl~iDE 138 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA------MGGVLFIDE 138 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH------TTSEEEEET
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc------CCCEEEEEC
Confidence 34568999999999999999999999832 238999999999998988877 667777665 478999999
Q ss_pred cccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 81 VTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 81 id~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+|.+.+.+.+...
T Consensus 139 id~l~~~~~~~~~------------------------------------------------------------------- 151 (309)
T 3syl_A 139 AYYLYRPDNERDY------------------------------------------------------------------- 151 (309)
T ss_dssp GGGSCCCC---CC-------------------------------------------------------------------
T ss_pred hhhhccCCCcccc-------------------------------------------------------------------
Confidence 9999654321100
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCHhhHHHhhcCCCChHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhccccc
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTLHDLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAEL 240 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~~dl~~~a~~~~ggadi~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 240 (409)
T Consensus 152 -------------------------------------------------------------------------------- 151 (309)
T 3syl_A 152 -------------------------------------------------------------------------------- 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCC
Q psy2778 241 VPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTP 318 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~ 318 (409)
+.+ .++.|++.++.... .++|+++|... ....+.+.+.+++|| ..+.|++
T Consensus 152 -------------~~~-------~~~~Ll~~l~~~~~~~~~i~~~~~~~--------~~~~~~~~~~l~~R~~~~i~~~~ 203 (309)
T 3syl_A 152 -------------GQE-------AIEILLQVMENNRDDLVVILAGYADR--------MENFFQSNPGFRSRIAHHIEFPD 203 (309)
T ss_dssp -------------THH-------HHHHHHHHHHHCTTTCEEEEEECHHH--------HHHHHHHSTTHHHHEEEEEEECC
T ss_pred -------------cHH-------HHHHHHHHHhcCCCCEEEEEeCChHH--------HHHHHhhCHHHHHhCCeEEEcCC
Confidence 001 44455555555443 34445544210 011112235599999 8999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-------cCCccHHHHHHHHHHHHHHH
Q psy2778 319 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEI-------GTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~-------s~~g~~R~al~ll~~~~~~a 370 (409)
++.+++.++++..+.+.++.+++++++.+++. ...|++|.+.++++.+...+
T Consensus 204 ~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 204 YSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 44589999999999998654
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5e-20 Score=176.32 Aligned_cols=134 Identities=11% Similarity=0.174 Sum_probs=92.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceE-EEecCcceeeecccccCCCCCCCchhhhhhh--heeecCCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIV-IFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTPY 319 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~--~~i~~~~~ 319 (409)
.++++||+|.+..+ ..+..|.+..+...++++ |..+|. ..++...+++.++||+ .+|.|+||
T Consensus 134 ~ii~lDE~d~l~~q------~~L~~l~~~~~~~~s~~~vI~i~n~---------~d~~~~~L~~~v~SR~~~~~i~F~pY 198 (318)
T 3te6_A 134 TLILIQNPENLLSE------KILQYFEKWISSKNSKLSIICVGGH---------NVTIREQINIMPSLKAHFTEIKLNKV 198 (318)
T ss_dssp EEEEEECCSSSCCT------HHHHHHHHHHHCSSCCEEEEEECCS---------SCCCHHHHHTCHHHHTTEEEEECCCC
T ss_pred eEEEEecHHHhhcc------hHHHHHHhcccccCCcEEEEEEecC---------cccchhhcchhhhccCCceEEEeCCC
Confidence 47777887777521 122222232333445554 444442 2233334556678998 46999999
Q ss_pred CHHHHHHHHHHHHhhc--C---------------------------------CCCCHHHHHHHHHh--cCCccHHHHHHH
Q psy2778 320 NQKDMEAIIKLRANTE--G---------------------------------HVLDDEALVTLSEI--GTRSTLRYVVQL 362 (409)
Q Consensus 320 ~~~e~~~il~~~~~~~--~---------------------------------~~i~~~~l~~I~~~--s~~g~~R~al~l 362 (409)
+.+++.+|++.+.+.. + +.+++++++++++. +..||+|.|+++
T Consensus 199 t~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~i 278 (318)
T 3te6_A 199 DKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKI 278 (318)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHH
Confidence 9999999999988753 1 14799999999995 238999999999
Q ss_pred HHHHHHHHHH---------hCCCCccHHHHHHHHHhcc
Q psy2778 363 LTPAALTAKT---------NGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 363 l~~~~~~a~~---------~~~~~I~~~~v~~~~~~~~ 391 (409)
|+.|...|+. .|...||.+++.++++-+.
T Consensus 279 lr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 279 CEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp HHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHh
Confidence 9999999864 2335789999988887544
No 30
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.81 E-value=2.2e-19 Score=182.05 Aligned_cols=175 Identities=19% Similarity=0.304 Sum_probs=129.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
...++|+||+||||||||++|+++|.+++. +|+.++++++...+++... .++.+|+.+. ...|+++|+||+|.+
T Consensus 61 ~~ip~GvLL~GppGtGKTtLaraIa~~~~~--~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~---~~~p~il~IDEId~l 135 (499)
T 2dhr_A 61 ARIPKGVLLVGPPGVGKTHLARAVAGEARV--PFITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAV 135 (499)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTC--CEEEEEGGGGTSSCTTHHHHHHHHHTTTSS---SSSSCEEEEECGGGT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEEehhHHHHhhhhhHHHHHHHHHHHHH---hcCCCEEEEehHHHH
Confidence 344689999999999999999999999984 9999999999888888776 6777777663 246899999999999
Q ss_pred cccccCCCCCCc---cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccc
Q psy2778 85 TPVETENPMGGY---GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDL 161 (409)
Q Consensus 85 ~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~ 161 (409)
...+......+. .+.+++++..|+ +......+++.++++.+..+++...+++|||+
T Consensus 136 ~~~r~~~~~~~~~e~~~~l~~LL~~Ld---------------------g~~~~~~viviAatn~p~~LD~aLlr~gRfdr 194 (499)
T 2dhr_A 136 GRKRGSGVGGGNDEREQTLNQLLVEMD---------------------GFEKDTAIVVMAATNRPDILDPALLRPGRFDR 194 (499)
T ss_dssp CCCSSSSTTTSSHHHHHHHHHHHHHGG---------------------GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCC
T ss_pred HHhhccCcCCCcHHHHHHHHHHHHHhc---------------------ccccCccEEEEEecCChhhcCcccccccccce
Confidence 876653211111 123333332222 23333455566666688889999999999995
Q ss_pred cceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 162 EAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 162 ~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
.+.++.|+...|..|++.+.. .++..++..+.| |+|+.++|+.+.
T Consensus 195 ----~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa 248 (499)
T 2dhr_A 195 ----QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 248 (499)
T ss_dssp ----EEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHH
T ss_pred ----EEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 555566678888889876532 157889999999 899999997664
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=175.28 Aligned_cols=177 Identities=15% Similarity=0.270 Sum_probs=123.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELT 85 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~ 85 (409)
.+++++||+||||||||++|+++|++++. +|+.++++++.+.+.++.+ .++..|..+. ...|++|||||+|.+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~--~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~---~~~~~vl~iDEid~l~ 189 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGA--TFFSISASSLTSKWVGEGEKMVRALFAVAR---CQQPAVIFIDEIDSLL 189 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTC--EEEEEEGGGGCCSSTTHHHHHHHHHHHHHH---HTCSEEEEEETHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC--eEEEEehHHhhccccchHHHHHHHHHHHHH---hcCCeEEEEeCchhhh
Confidence 45789999999999999999999999986 9999999999999999887 6778887774 3578999999999998
Q ss_pred ccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccccee
Q psy2778 86 PVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAEE 165 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~~~ 165 (409)
+.+.........+.+..++..+.... .-...++++|++| +.+..+++...+ ||+.
T Consensus 190 ~~~~~~~~~~~~~~~~~lL~~l~~~~------------------~~~~~~v~vI~at-n~~~~l~~~l~~--Rf~~---- 244 (357)
T 3d8b_A 190 SQRGDGEHESSRRIKTEFLVQLDGAT------------------TSSEDRILVVGAT-NRPQEIDEAARR--RLVK---- 244 (357)
T ss_dssp BC------CHHHHHHHHHHHHHHC----------------------CCCCEEEEEEE-SCGGGBCHHHHT--TCCE----
T ss_pred ccCCCCcchHHHHHHHHHHHHHhccc------------------ccCCCCEEEEEec-CChhhCCHHHHh--hCce----
Confidence 87654332222233333433322110 0112345555555 567777765544 8873
Q ss_pred eccCCCccHHHHHHHHhhc--------CHhhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 166 YVPLPKGDVHKKKEVIQDV--------TLHDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 166 ~i~~p~~~~~~r~~il~~~--------~~~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.+.++.++...|..+++.. +..+++.++..+.| |+|+..+|..++...
T Consensus 245 ~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 245 RLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP 302 (357)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3444555666777776543 34468889999999 999999998877554
No 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=1.1e-18 Score=169.75 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=108.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
+++++||++.++.+ .++.|.+.+|.+.. ..+|+++|. +..+++.+++||..+.+.|++.
T Consensus 135 ~vliiDE~~~l~~~-------~~~~Ll~~le~~~~~~~~il~~~~-------------~~~l~~~l~sR~~~i~~~~~~~ 194 (353)
T 1sxj_D 135 KIIILDEADSMTAD-------AQSALRRTMETYSGVTRFCLICNY-------------VTRIIDPLASQCSKFRFKALDA 194 (353)
T ss_dssp EEEEETTGGGSCHH-------HHHHHHHHHHHTTTTEEEEEEESC-------------GGGSCHHHHHHSEEEECCCCCH
T ss_pred eEEEEECCCccCHH-------HHHHHHHHHHhcCCCceEEEEeCc-------------hhhCcchhhccCceEEeCCCCH
Confidence 59999999999988 89999999998754 456666653 3457788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT-AISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~-~I~~~~v~~~~~~ 389 (409)
+++.+++..++.++++.++++++++|++.+ .|++|.++++|+.+..++...+.. .|+.++|+.+.+.
T Consensus 195 ~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 195 SNAIDRLRFISEQENVKCDDGVLERILDIS-AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHT-SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCC
Confidence 999999999999999999999999999999 899999999999988876544433 7999999988763
No 33
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=1.6e-19 Score=175.65 Aligned_cols=125 Identities=22% Similarity=0.231 Sum_probs=105.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ +++.|++.+|.+.. ..+++++|. ++.+++.++|||..+++.+++.
T Consensus 112 ~viiiDe~~~l~~~-------~~~~L~~~le~~~~~~~~il~~n~-------------~~~i~~~i~sR~~~~~~~~l~~ 171 (340)
T 1sxj_C 112 KLIILDEADAMTNA-------AQNALRRVIERYTKNTRFCVLANY-------------AHKLTPALLSQCTRFRFQPLPQ 171 (340)
T ss_dssp EEEEETTGGGSCHH-------HHHHHHHHHHHTTTTEEEEEEESC-------------GGGSCHHHHTTSEEEECCCCCH
T ss_pred eEEEEeCCCCCCHH-------HHHHHHHHHhcCCCCeEEEEEecC-------------ccccchhHHhhceeEeccCCCH
Confidence 58899999999988 99999999998755 556677653 4567889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+.+..+++++++.++++++++|++.| +|++|.|+++|+.+...+...+...|+.++|..+.+
T Consensus 172 ~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s-~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 172 EAIERRIANVLVHEKLKLSPNAEKALIELS-NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHHHHHHHHTTTCCBCHHHHHHHHHHH-TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 999999999999999999999999999999 999999999998775443322334688888876654
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=2e-18 Score=167.33 Aligned_cols=99 Identities=22% Similarity=0.242 Sum_probs=86.3
Q ss_pred ceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccH
Q psy2778 278 PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTL 356 (409)
Q Consensus 278 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~ 356 (409)
.++|.+||. ...+++++++|| .++.+++++.+++.++++..+...++.+++++++.|++.+ .|++
T Consensus 155 ~~~i~atn~-------------~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G~~ 220 (338)
T 3pfi_A 155 FTLIGATTR-------------AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RSTP 220 (338)
T ss_dssp CEEEEEESC-------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TTCH
T ss_pred eEEEEeCCC-------------ccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCH
Confidence 457777764 223678899999 8999999999999999999999999999999999999977 9999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 357 RYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 357 R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
|.+.++++.+..++...+...|+.+++..++..+
T Consensus 221 r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 221 RIALRLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 9999999999988887777889999998887643
No 35
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.78 E-value=7.8e-20 Score=171.53 Aligned_cols=178 Identities=20% Similarity=0.280 Sum_probs=121.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+++++||+||||||||++|+++|++++. +++.++++++.+.+.+..+ .++..|+.+.. ..|++|||||+|.
T Consensus 40 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~vl~iDEid~ 114 (268)
T 2r62_A 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PFFSMGGSSFIEMFVGLGASRVRDLFETAKK---QAPSIIFIDEIDA 114 (268)
T ss_dssp SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CCCCCCSCTTTTSCSSSCSSSSSTTHHHHHH---SCSCEEEESCGGG
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEEEechHHHHHhhcchHHHHHHHHHHHHHh---cCCeEEEEeChhh
Confidence 3455789999999999999999999999986 8999999998888877765 56677877753 4789999999999
Q ss_pred ccccccCCCC----CCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccc
Q psy2778 84 LTPVETENPM----GGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEF 159 (409)
Q Consensus 84 i~~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rf 159 (409)
+.+++..... ....+.+..++..+... +-....+++| +|++.+..+++...+++||
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------------~~~~~~v~vi-~ttn~~~~ld~~l~r~~Rf 174 (268)
T 2r62_A 115 IGKSRAAGGVVSGNDEREQTLNQLLAEMDGF-------------------GSENAPVIVL-AATNRPEILDPALMRPGRF 174 (268)
T ss_dssp TTC----------CCCSCSSTTTTTTTTTCS-------------------SCSCSCCEEE-ECBSCCTTSCGGGGSSSSS
T ss_pred hcccccccccCCCchhHHHHHHHHHHHhhCc-------------------ccCCCCEEEE-EecCCchhcCHhHcCCCCC
Confidence 9887543211 11112233332222111 1112234555 5555778888888888999
Q ss_pred cccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHh
Q psy2778 160 DLEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIK 211 (409)
Q Consensus 160 d~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~ 211 (409)
+.. +.++.|+...|..+++.... .+++.++..+.| |+|+.++|..+..
T Consensus 175 ~~~----i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 175 DRQ----VLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAAL 231 (268)
T ss_dssp CCC----CBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHH
T ss_pred CeE----EEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 953 44444555667777765421 247788999998 8999999977654
No 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.78 E-value=2.7e-20 Score=199.91 Aligned_cols=179 Identities=18% Similarity=0.310 Sum_probs=133.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+..++.++||+||||||||++|+++|++++. +|+.++++++.+.|+|+.+ .+..+|+.+.. ..|+++|+||+|.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~---~~p~vl~iDEid~ 581 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLTMWFGESEANVREIFDKARQ---AAPCVLFFDELDS 581 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCSSSTTCCTTTSSHHHHHHHHHHHH---HCSBCCCCSSHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEechHhhhhhcCccHHHHHHHHHHHHh---cCCeEEEEEChhh
Confidence 5567889999999999999999999999986 8999999999999999988 78999998853 5799999999999
Q ss_pred ccccccCCCCC---CccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccc
Q psy2778 84 LTPVETENPMG---GYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFD 160 (409)
Q Consensus 84 i~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd 160 (409)
+++.+...... ...+.+++++..|+ ++.....++|++|||.++.++++..+++||+
T Consensus 582 l~~~r~~~~~~~~~~~~~v~~~LL~~ld---------------------~~~~~~~v~vI~tTN~~~~ld~allrpgRf~ 640 (806)
T 1ypw_A 582 IAKARGGNIGDGGGAADRVINQILTEMD---------------------GMSTKKNVFIIGATNRPDIIDPAILRPGRLD 640 (806)
T ss_dssp HCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------------------CCBCCCCCBSCGGGSCTTSSGGGTT
T ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHh---------------------cccccCCeEEEEecCCcccCCHHHhCccccC
Confidence 98877643211 11233333333222 2223344566677779999999999999999
Q ss_pred ccceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhhh
Q psy2778 161 LEAEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKSK 213 (409)
Q Consensus 161 ~~~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~~ 213 (409)
.. +++|.| +...|..|++.... .+++.++..+.| |+||.++|+.+....
T Consensus 641 ~~--i~~~~p--~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a 698 (806)
T 1ypw_A 641 QL--IYIPLP--DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698 (806)
T ss_dssp SC--CCCCCC--CCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHH
T ss_pred ce--eecCCC--CHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHH
Confidence 54 344444 55568888876542 257788888888 999999998776554
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.78 E-value=1.7e-18 Score=165.33 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=70.9
Q ss_pred CCCCCchhhhhhh-heeecCCCCHHHHHHHHHH-----------HHhhcC--CCCCHHHHHHHHHhcC-------CccHH
Q psy2778 299 SPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKL-----------RANTEG--HVLDDEALVTLSEIGT-------RSTLR 357 (409)
Q Consensus 299 ~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~-----------~~~~~~--~~i~~~~l~~I~~~s~-------~g~~R 357 (409)
.+..+++++++|| ..+.+++++.+++.++++. .+...+ +.++++++++|++.+. .|++|
T Consensus 181 ~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R 260 (310)
T 1ofh_A 181 RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGAR 260 (310)
T ss_dssp CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTH
T ss_pred CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcH
Confidence 4567889999999 5699999999999999983 222344 4799999999999984 58999
Q ss_pred HHHHHHHHHHHHHHH-----hCCC-CccHHHHHHHHHh
Q psy2778 358 YVVQLLTPAALTAKT-----NGRT-AISKQDILEVSTL 389 (409)
Q Consensus 358 ~al~ll~~~~~~a~~-----~~~~-~I~~~~v~~~~~~ 389 (409)
.+.++++.+...+.. ++.. .|+.++|++++.-
T Consensus 261 ~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 261 RLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 999999998754321 1222 4999999988753
No 38
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.78 E-value=1.3e-18 Score=161.98 Aligned_cols=175 Identities=19% Similarity=0.305 Sum_probs=125.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccccc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELT 85 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~ 85 (409)
..++|++|+||||||||++++++|+.++. +++.+++.++...+.+... .+..+|+.+. ...|+++|+||+|.+.
T Consensus 47 ~~~~g~ll~G~~G~GKTtl~~~i~~~~~~--~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~~Deid~l~ 121 (254)
T 1ixz_A 47 RIPKGVLLVGPPGVGKTHLARAVAGEARV--PFITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVG 121 (254)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEHHHHHHSCTTHHHHHHHHHHHHHT---TSSSEEEEEETHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCC--CEEEeeHHHHHHHHhhHHHHHHHHHHHHHH---hcCCeEEEehhhhhhh
Confidence 34678999999999999999999999985 8999999988777777665 6777888764 2468999999999997
Q ss_pred ccccCCCCCCc---cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCcccccccccccc
Q psy2778 86 PVETENPMGGY---GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLE 162 (409)
Q Consensus 86 ~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~ 162 (409)
..+........ .+.+.+++..| .+.....++++.++++.+..+++...+++|||.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~ll~~l---------------------~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~- 179 (254)
T 1ixz_A 122 RKRGSGVGGGNDEREQTLNQLLVEM---------------------DGFEKDTAIVVMAATNRPDILDPALLRPGRFDR- 179 (254)
T ss_dssp C---------CHHHHHHHHHHHHHH---------------------HTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCE-
T ss_pred cccCccccccchHHHHHHHHHHHHH---------------------hCCCCCCCEEEEEccCCchhCCHHHcCCCcCCe-
Confidence 66542110011 11222222111 133445566777777788999999999999995
Q ss_pred ceeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHh
Q psy2778 163 AEEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIK 211 (409)
Q Consensus 163 ~~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~ 211 (409)
.++++.|+...|..+++.... .++..++..++| |+|+.++|..+..
T Consensus 180 ---~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~ 234 (254)
T 1ixz_A 180 ---QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 234 (254)
T ss_dssp ---EEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred ---EEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 566666677888888875421 247889999999 8999999976653
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=9.6e-19 Score=168.69 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=90.0
Q ss_pred Cccccccccccc-ccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 243 GVLFIDEVHMLD-LETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 243 gvl~ide~~~l~-~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
++++|||+|.++ .+ .++.|++.+|.+.+ ..+|+++|. +..+++.+++||.++.+++++
T Consensus 107 ~vliiDEi~~l~~~~-------~~~~L~~~le~~~~~~~iI~~~n~-------------~~~l~~~l~sR~~~i~~~~~~ 166 (324)
T 3u61_B 107 KVIVIDEFDRSGLAE-------SQRHLRSFMEAYSSNCSIIITANN-------------IDGIIKPLQSRCRVITFGQPT 166 (324)
T ss_dssp EEEEEESCCCGGGHH-------HHHHHHHHHHHHGGGCEEEEEESS-------------GGGSCTTHHHHSEEEECCCCC
T ss_pred eEEEEECCcccCcHH-------HHHHHHHHHHhCCCCcEEEEEeCC-------------ccccCHHHHhhCcEEEeCCCC
Confidence 588888888888 77 88999999998755 556777764 235778899999999999999
Q ss_pred HHHH-------HHHHHHHHhhcCCCCCH-HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 321 QKDM-------EAIIKLRANTEGHVLDD-EALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 321 ~~e~-------~~il~~~~~~~~~~i~~-~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
.++. .+.+...+.++++.+++ +++++|++.+ +||+|.|++.|+.+. ....|+.++|..+..
T Consensus 167 ~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~gd~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 167 DEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKN-FPDFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHT-CSCTTHHHHHHHHHG------GGTCBCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhC-CCCHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 8884 34455567788999999 9999999999 999999999999876 123588888876654
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.5e-18 Score=178.00 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=97.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCHH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQK 322 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~~ 322 (409)
.+++|||+|.+..+ ..+.+..|++.++....|+|+++++. . ...+ +.+++||..+.|++++.+
T Consensus 150 ~vliIDEid~l~~~----~~~~l~~L~~~l~~~~~~iIli~~~~----------~--~~~l-~~l~~r~~~i~f~~~~~~ 212 (516)
T 1sxj_A 150 FVIIMDEVDGMSGG----DRGGVGQLAQFCRKTSTPLILICNER----------N--LPKM-RPFDRVCLDIQFRRPDAN 212 (516)
T ss_dssp EEEEECSGGGCCTT----STTHHHHHHHHHHHCSSCEEEEESCT----------T--SSTT-GGGTTTSEEEECCCCCHH
T ss_pred eEEEEECCCccchh----hHHHHHHHHHHHHhcCCCEEEEEcCC----------C--Cccc-hhhHhceEEEEeCCCCHH
Confidence 58899999988764 11245788888888777776666531 1 1122 348899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 323 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 323 e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
++.+++..++.++++.+++++++.|++.+ .||+|.++++|+.+.. +...|+.++++.+..
T Consensus 213 ~~~~~L~~i~~~~~~~i~~~~l~~la~~s-~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 213 SIKSRLMTIAIREKFKLDPNVIDRLIQTT-RGDIRQVINLLSTIST-----TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHHHHHHTCCCCTTHHHHHHHHT-TTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHH
Confidence 99999999999999999999999999999 9999999999987643 235688888877765
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.78 E-value=5.9e-18 Score=170.11 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=79.8
Q ss_pred CCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCc
Q psy2778 302 GIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378 (409)
Q Consensus 302 ~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I 378 (409)
.+.+.+++|| .++.+++++.++..++++..+...++.++++++++|++.+ .|++|.+.++|+.+..+|...+. .|
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~-~gn~R~l~~~L~~~~~~a~~~~~-~I 320 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETTGK-EV 320 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHSSS-CC
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 4678899999 6899999999999999999999999999999999999999 89999999999999999876654 69
Q ss_pred cHHHHHHHHHhcc
Q psy2778 379 SKQDILEVSTLFL 391 (409)
Q Consensus 379 ~~~~v~~~~~~~~ 391 (409)
+.+++++++.-..
T Consensus 321 t~~~~~~~l~~~~ 333 (440)
T 2z4s_A 321 DLKEAILLLKDFI 333 (440)
T ss_dssp CHHHHHHHTSTTT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987544
No 42
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.78 E-value=9.4e-18 Score=162.75 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=82.5
Q ss_pred CCCCchhhhhhhh-eeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCc
Q psy2778 300 PHGIPLDLLDRLL-IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378 (409)
Q Consensus 300 ~~~~~~~l~~r~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I 378 (409)
+..++..+++||. .+.+.+++.+++.++++..++..++.++++++.+|++.+ +|++|.|+++|+.+..+|..++...|
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~-~G~~R~a~~ll~~~~~~a~~~~~~~I 238 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRVRDMLTVVKADRI 238 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 4577888999994 688999999999999999999999999999999999999 99999999999999999988888889
Q ss_pred cHHHHHHHHHhc
Q psy2778 379 SKQDILEVSTLF 390 (409)
Q Consensus 379 ~~~~v~~~~~~~ 390 (409)
+.+++++++...
T Consensus 239 t~~~v~~al~~~ 250 (334)
T 1in4_A 239 NTDIVLKTMEVL 250 (334)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999998754
No 43
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.76 E-value=4.7e-18 Score=162.73 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=101.3
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|.++.+ .++.|.+.+|.+.. ..+|+++|. +..+++.+++||..+++.+++.
T Consensus 104 ~vliiDe~~~l~~~-------~~~~L~~~le~~~~~~~~i~~~~~-------------~~~l~~~l~sr~~~i~~~~~~~ 163 (319)
T 2chq_A 104 KIIFLDEADALTAD-------AQAALRRTMEMYSKSCRFILSCNY-------------VSRIIEPIQSRCAVFRFKPVPK 163 (319)
T ss_dssp EEEEEETGGGSCHH-------HHHTTGGGTSSSSSSEEEEEEESC-------------GGGSCHHHHTTCEEEECCCCCH
T ss_pred eEEEEeCCCcCCHH-------HHHHHHHHHHhcCCCCeEEEEeCC-------------hhhcchHHHhhCeEEEecCCCH
Confidence 58899999999888 88999999998755 456666653 2466788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+++..+++++++.+++++++.|++.+ +||+|.++++|+.+... ...|+.++|..+.+
T Consensus 164 ~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 164 EAMKKRLLEICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHHHHHHHHTTCCCBCHHHHHHHHHTT-TTCHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 999999999999999999999999999999 99999999999877542 24588888876654
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=3.2e-17 Score=147.85 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=101.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||++.++.+ ..+.|.+.++.... ..+|++++. +..+.+.+++|+..+.+.+++.
T Consensus 104 ~vliiDe~~~l~~~-------~~~~l~~~l~~~~~~~~~i~~~~~-------------~~~~~~~l~~r~~~i~~~~~~~ 163 (226)
T 2chg_A 104 KIIFLDEADALTAD-------AQAALRRTMEMYSKSCRFILSCNY-------------VSRIIEPIQSRCAVFRFKPVPK 163 (226)
T ss_dssp EEEEEETGGGSCHH-------HHHHHHHHHHHTTTTEEEEEEESC-------------GGGSCHHHHTTSEEEECCCCCH
T ss_pred eEEEEeChhhcCHH-------HHHHHHHHHHhcCCCCeEEEEeCC-------------hhhcCHHHHHhCceeecCCCCH
Confidence 57888888888777 77888888887544 445666553 2356788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+++...+...++.+++++++.|++.+ .|++|.++++++.+...+ ..|+.++|+.+++
T Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 164 EAMKKRLLEICEKEGVKITEDGLEALIYIS-GGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 999999999999999999999999999999 999999999999887654 5799999999876
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=7.4e-17 Score=147.77 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=76.6
Q ss_pred CCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCc
Q psy2778 302 GIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378 (409)
Q Consensus 302 ~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I 378 (409)
...+.+++|+ .++.+++++.++..+++...++..++.++++++++|++.+ .|++|.+.++|+.+..+|..++ ..|
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~a~~~~-~~I 231 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRM-ARDLRTLFDVLDRLDKASMVHQ-RKL 231 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhC-CCC
Confidence 3457899999 8999999999999999999999999999999999999999 9999999999999998886555 469
Q ss_pred cHHHHHHHHH
Q psy2778 379 SKQDILEVST 388 (409)
Q Consensus 379 ~~~~v~~~~~ 388 (409)
+.++|++++.
T Consensus 232 t~~~v~~~l~ 241 (242)
T 3bos_A 232 TIPFVKEMLR 241 (242)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhh
Confidence 9999988764
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.74 E-value=1.9e-17 Score=159.35 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=78.3
Q ss_pred CCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 301 HGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 301 ~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
..+.+++++|| .++.+.+++.+++.++++..+...++.+++++++.|++.+ .|++|.+.++++.+...|...+...|+
T Consensus 149 ~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~ 227 (324)
T 1hqc_A 149 GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRS-RGTMRVAKRLFRRVRDFAQVAGEEVIT 227 (324)
T ss_dssp SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS-CSCHHHHHHHHHHHTTTSTTTSCSCCC
T ss_pred ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 35567799999 6999999999999999999999999999999999999999 999999999999998777655667899
Q ss_pred HHHHHHHHHhc
Q psy2778 380 KQDILEVSTLF 390 (409)
Q Consensus 380 ~~~v~~~~~~~ 390 (409)
.+++..+...+
T Consensus 228 ~~~~~~~~~~~ 238 (324)
T 1hqc_A 228 RERALEALAAL 238 (324)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998877544
No 47
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.74 E-value=1.2e-17 Score=157.80 Aligned_cols=174 Identities=20% Similarity=0.313 Sum_probs=123.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEecccccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~i~~ 86 (409)
.++|++|+||||||||++++++|..++. +++.+++.++...+.+... .+..+|+.+.. ..|+++|+||+|.+..
T Consensus 72 ~~~gvll~Gp~GtGKTtl~~~i~~~~~~--~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~i~~iDeid~l~~ 146 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGKTHLARAVAGEARV--PFITASGSDFVEMFVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGR 146 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT---SCSEEEEEETHHHHHC
T ss_pred CCCeEEEECCCcChHHHHHHHHHHHcCC--CEEEecHHHHHHHHhhHHHHHHHHHHHHHHh---cCCcEEehhhhHhhhc
Confidence 4578999999999999999999999984 8999999988777777665 67778887742 4689999999999876
Q ss_pred cccCCCCCCc---cchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccccccCccccccccccccc
Q psy2778 87 VETENPMGGY---GKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEA 163 (409)
Q Consensus 87 ~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~~~~~~~~~~~~rfd~~~ 163 (409)
.+........ .+.+.+++..| .+.....++++.++++.+..+++...+++||+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~ll~~l---------------------sgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~-- 203 (278)
T 1iy2_A 147 KRGSGVGGGNDEREQTLNQLLVEM---------------------DGFEKDTAIVVMAATNRPDILDPALLRPGRFDR-- 203 (278)
T ss_dssp C--------CHHHHHHHHHHHHHH---------------------TTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCC--
T ss_pred ccccccCCcchHHHHHHHHHHHHH---------------------hCCCCCCCEEEEEecCCchhCCHhHcCCCcCCe--
Confidence 5542110000 11122221111 133344566677777788889999999999995
Q ss_pred eeeccCCCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHh
Q psy2778 164 EEYVPLPKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIK 211 (409)
Q Consensus 164 ~~~i~~p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~ 211 (409)
.++++.|+...|..+++.... .++..++..++| |+|+.++|..+..
T Consensus 204 --~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 258 (278)
T 1iy2_A 204 --QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 258 (278)
T ss_dssp --EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred --EEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455566677888888875421 247889999999 8999999976653
No 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=1.3e-16 Score=170.95 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=89.0
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeec----ccccCCC------
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVR----GTDDIIS------ 299 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~----~~~~~~~------ 299 (409)
.+|+|+||++.++++ .++.|++.||+.. ..+||+++|.+...+. |......
T Consensus 558 ~~vl~lDEi~~~~~~-------~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~ 630 (758)
T 1r6b_X 558 HAVLLLDEIEKAHPD-------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAME 630 (758)
T ss_dssp SEEEEEETGGGSCHH-------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHH
T ss_pred CcEEEEeCccccCHH-------HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHH
Confidence 479999999999999 9999999999742 2457888886432110 0000000
Q ss_pred --CCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhhc---------CCCCCHHHHHHHHHhcCCc--cHHHHHHHHHH
Q psy2778 300 --PHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTE---------GHVLDDEALVTLSEIGTRS--TLRYVVQLLTP 365 (409)
Q Consensus 300 --~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~~---------~~~i~~~~l~~I~~~s~~g--~~R~al~ll~~ 365 (409)
...++++|++|| .++.|+|++.+++..|+...+.+. .+.++++++++|++.+..+ ++|...++++.
T Consensus 631 ~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~ 710 (758)
T 1r6b_X 631 EIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_dssp HHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHH
T ss_pred HHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHH
Confidence 015688999999 789999999999999999876532 4689999999999886444 48888888887
Q ss_pred HHHH
Q psy2778 366 AALT 369 (409)
Q Consensus 366 ~~~~ 369 (409)
+...
T Consensus 711 ~~~~ 714 (758)
T 1r6b_X 711 NLKK 714 (758)
T ss_dssp HHTH
T ss_pred HHHH
Confidence 7653
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1.6e-17 Score=159.54 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=98.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
++++|||+|.++.+ .++.|.+.+|.+.. ..+|++++. +..+++.+.+||..++++|++.
T Consensus 112 ~vliiDe~~~l~~~-------~~~~L~~~le~~~~~~~~i~~~~~-------------~~~l~~~l~sr~~~~~~~~l~~ 171 (327)
T 1iqp_A 112 KIIFLDEADALTQD-------AQQALRRTMEMFSSNVRFILSCNY-------------SSKIIEPIQSRCAIFRFRPLRD 171 (327)
T ss_dssp EEEEEETGGGSCHH-------HHHHHHHHHHHTTTTEEEEEEESC-------------GGGSCHHHHHTEEEEECCCCCH
T ss_pred eEEEEeCCCcCCHH-------HHHHHHHHHHhcCCCCeEEEEeCC-------------ccccCHHHHhhCcEEEecCCCH
Confidence 58899999999888 89999999998654 456666643 2457788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
+++.+++..++...++.++++++++|++.+ +||+|.++++++.+...+ ..|+.++|..+.
T Consensus 172 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~ 231 (327)
T 1iqp_A 172 EDIAKRLRYIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAALD-----KKITDENVFMVA 231 (327)
T ss_dssp HHHHHHHHHHHHTTTCEECHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC-----SEECHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHH
Confidence 999999999999999999999999999999 999999999998775432 245665555443
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.73 E-value=7e-17 Score=158.51 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=98.6
Q ss_pred cccccccccccccccCchhhhHHHHHHHhcc---cCCceEEEecCcceeeecccccCCCCCCCchhhhhhh--heeecCC
Q psy2778 244 VLFIDEVHMLDLETFMPHLETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTP 318 (409)
Q Consensus 244 vl~ide~~~l~~~~~~~~~~~~~~L~~~~e~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~--~~i~~~~ 318 (409)
+++|||+|.+.... ...+.+..|.+.++. .....+|+++|.. .....+.+.+++|+ ..+.++|
T Consensus 133 vlilDEi~~l~~~~--~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~----------~~~~~l~~~l~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 133 IIVLDEIDFLPKRP--GGQDLLYRITRINQELGDRVWVSLVGITNSL----------GFVENLEPRVKSSLGEVELVFPP 200 (387)
T ss_dssp EEEEETTTHHHHST--THHHHHHHHHHGGGCC-----CEEEEECSCS----------TTSSSSCHHHHTTTTSEECCBCC
T ss_pred EEEEccHhhhcccC--CCChHHHhHhhchhhcCCCceEEEEEEECCC----------chHhhhCHHHHhcCCCeEEeeCC
Confidence 77777777665320 011133344444443 2234566666532 12356788899999 6799999
Q ss_pred CCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 319 YNQKDMEAIIKLRANT--EGHVLDDEALVTLSEIGTR---STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~--~~~~i~~~~l~~I~~~s~~---g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
++.+++.++++.++.. .+..+++++++.|++.+ . |++|+++++|+.+...|..++...|+.+++..++..
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALA-AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHH-HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9999999999988875 56889999999999999 6 999999999999998888777788999999988753
No 51
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.73 E-value=4.6e-17 Score=159.45 Aligned_cols=122 Identities=25% Similarity=0.340 Sum_probs=105.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ .++.|.+.+|++.. .++|++++. +..+++.+++||..+++++++.
T Consensus 121 ~vliiDe~~~l~~~-------~~~~Ll~~le~~~~~~~~Il~~~~-------------~~~l~~~l~sr~~~i~~~~l~~ 180 (373)
T 1jr3_A 121 KVYLIDEVHMLSRH-------SFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILSRCLQFHLKALDV 180 (373)
T ss_dssp EEEEEECGGGSCHH-------HHHHHHHHHHSCCSSEEEEEEESC-------------GGGSCHHHHTTSEEEECCCCCH
T ss_pred EEEEEECcchhcHH-------HHHHHHHHHhcCCCceEEEEEeCC-------------hHhCcHHHHhheeEeeCCCCCH
Confidence 69999999999998 99999999998755 556666653 2356788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
+++.++++.++++.|+.+++++++.|++.+ +|++|.++++++.+..++ ...|+.++|..+.+.
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 181 EQIRHQLEHILNEEHIAHEPRALQLLARAA-EGSLRDALSLTDQAIASG----DGQVSTQAVSAMLGT 243 (373)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHS-SSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhc----CCcccHHHHHHHhCC
Confidence 999999999999999999999999999999 999999999999886543 356899988877543
No 52
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=2.4e-17 Score=158.05 Aligned_cols=120 Identities=14% Similarity=0.196 Sum_probs=102.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||+|.++.+ .++.|.+.+|.+.. ..+|++++. +..+++.+++||..+++++++.
T Consensus 109 ~viiiDe~~~l~~~-------~~~~L~~~le~~~~~~~~il~~~~-------------~~~l~~~l~sr~~~i~~~~~~~ 168 (323)
T 1sxj_B 109 KIVILDEADSMTAG-------AQQALRRTMELYSNSTRFAFACNQ-------------SNKIIEPLQSQCAILRYSKLSD 168 (323)
T ss_dssp EEEEEESGGGSCHH-------HHHTTHHHHHHTTTTEEEEEEESC-------------GGGSCHHHHTTSEEEECCCCCH
T ss_pred eEEEEECcccCCHH-------HHHHHHHHHhccCCCceEEEEeCC-------------hhhchhHHHhhceEEeecCCCH
Confidence 58999999999988 89999999998754 556666653 3467788999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
+++.+++..++.+.++++++++++.|++.+ +|++|.|+++|+.+.... ..|+.++|..+.+
T Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 169 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTA-EGDMRQAINNLQSTVAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH-----SSBCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----CCcCHHHHHHHHC
Confidence 999999999999999999999999999999 999999999999776321 3588888877654
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=8.2e-17 Score=155.24 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCchhhhhhh---heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH----HhC
Q psy2778 302 GIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK----TNG 374 (409)
Q Consensus 302 ~~~~~l~~r~---~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~----~~~ 374 (409)
.+.+.+++|+ .++.++| +.++..++++..+...++.++++++++|++.+ |++|.+.++|+.+..+.. ..+
T Consensus 147 ~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~ 223 (324)
T 1l8q_A 147 GVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKE 223 (324)
T ss_dssp TSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhcccc
Confidence 5788899999 7899999 99999999999999999999999999999998 899999999998877610 012
Q ss_pred CCCc-cHHHHHHHHHhc
Q psy2778 375 RTAI-SKQDILEVSTLF 390 (409)
Q Consensus 375 ~~~I-~~~~v~~~~~~~ 390 (409)
...| +.++|.++..-+
T Consensus 224 ~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 224 RKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 2358 888888877543
No 54
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=3.9e-17 Score=159.15 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=95.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.++++||++.++.+ .++.|.+.+|.+.. ..+|++|+. +..+++.++|||..++|++++.
T Consensus 136 ~vlilDE~~~L~~~-------~~~~L~~~le~~~~~~~~Il~t~~-------------~~~l~~~l~sR~~~~~~~~~~~ 195 (354)
T 1sxj_E 136 KCVIINEANSLTKD-------AQAALRRTMEKYSKNIRLIMVCDS-------------MSPIIAPIKSQCLLIRCPAPSD 195 (354)
T ss_dssp EEEEEECTTSSCHH-------HHHHHHHHHHHSTTTEEEEEEESC-------------SCSSCHHHHTTSEEEECCCCCH
T ss_pred eEEEEeCccccCHH-------HHHHHHHHHHhhcCCCEEEEEeCC-------------HHHHHHHHHhhceEEecCCcCH
Confidence 59999999999999 99999999998754 557777753 3457888999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCC-HHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLD-DEALVTLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~-~~~l~~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
+++.++++.++++++++++ +++++.|++.+ +||+|.|+++|+.+..++
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~-~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 196 SEISTILSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHHHHHHHHTCEECCSHHHHHHHHHH-TTCHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999 99999999999 999999999999887654
No 55
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=1.7e-16 Score=153.45 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=107.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-----------CCceEEEecCcceeeecccccCCCCCCCchhhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-----------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 311 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 311 (409)
+++|+||++.++.+ .++.|++.|+.. ..++++++|+.+. .....+.+++.+++||
T Consensus 111 ~vl~iDEi~~~~~~-------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~-------~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 111 NFILADEVNRSPAK-------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV-------EQEGTYPLPEAQVDRF 176 (331)
T ss_dssp SEEEEETGGGSCHH-------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT-------CCSCCCCCCHHHHTTS
T ss_pred cEEEEEccccCCHH-------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC-------cccCcccCCHHHHhhe
Confidence 69999999999998 899999999864 2244555543221 1112345899999999
Q ss_pred h-eeecCCCCHHHHHHHHHHHHhh----------------------cCCCCCHHHHHHHHHhcC----C-----------
Q psy2778 312 L-IIRTTPYNQKDMEAIIKLRANT----------------------EGHVLDDEALVTLSEIGT----R----------- 353 (409)
Q Consensus 312 ~-~i~~~~~~~~e~~~il~~~~~~----------------------~~~~i~~~~l~~I~~~s~----~----------- 353 (409)
. .+.+.+++.++..++++..+.. .++.++++++++|++++. .
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~ 256 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASY 256 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccc
Confidence 7 4999999999999999987654 278899999999987641 1
Q ss_pred ----ccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 354 ----STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 354 ----g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
.++|.++++++.+...|..+|+..|+++||.+++...+
T Consensus 257 ~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 257 ILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred cccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 27999999999999999999999999999999887654
No 56
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.72 E-value=8.3e-17 Score=156.05 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=87.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|.++.+ +++.|++.+|++.. .++|++|+. ++.+++.++|||..++|++++.
T Consensus 110 kvviIdead~l~~~-------a~naLLk~lEep~~~~~~Il~t~~-------------~~~l~~ti~SRc~~~~~~~~~~ 169 (334)
T 1a5t_A 110 KVVWVTDAALLTDA-------AANALLKTLEEPPAETWFFLATRE-------------PERLLATLRSRCRLHYLAPPPE 169 (334)
T ss_dssp EEEEESCGGGBCHH-------HHHHHHHHHTSCCTTEEEEEEESC-------------GGGSCHHHHTTSEEEECCCCCH
T ss_pred EEEEECchhhcCHH-------HHHHHHHHhcCCCCCeEEEEEeCC-------------hHhCcHHHhhcceeeeCCCCCH
Confidence 69999999999999 99999999999865 567777753 3578899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 367 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~ 367 (409)
+++.+.++.++ .++++++..+++.+ +|++|.|+++++.+.
T Consensus 170 ~~~~~~L~~~~-----~~~~~~~~~l~~~s-~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 170 QYAVTWLSREV-----TMSQDALLAALRLS-AGSPGAALALFQGDN 209 (334)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHT-TTCHHHHHHTTSSHH
T ss_pred HHHHHHHHHhc-----CCCHHHHHHHHHHc-CCCHHHHHHHhccch
Confidence 99999998665 78999999999999 999999999998654
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=1.7e-16 Score=144.69 Aligned_cols=122 Identities=25% Similarity=0.350 Sum_probs=104.4
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
+.+++|||+|.++.+ .++.|.+.++.... ..+|++++. +..+++.+++|+..+.+++++
T Consensus 127 ~~vlviDe~~~l~~~-------~~~~l~~~l~~~~~~~~~i~~t~~-------------~~~~~~~l~~r~~~i~l~~l~ 186 (250)
T 1njg_A 127 FKVYLIDEVHMLSRH-------SFNALLKTLEEPPEHVKFLLATTD-------------PQKLPVTILSRCLQFHLKALD 186 (250)
T ss_dssp SEEEEEETGGGSCHH-------HHHHHHHHHHSCCTTEEEEEEESC-------------GGGSCHHHHTTSEEEECCCCC
T ss_pred ceEEEEECcccccHH-------HHHHHHHHHhcCCCceEEEEEeCC-------------hHhCCHHHHHHhhhccCCCCC
Confidence 369999999999988 89999999987644 556666653 234577899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
.+++.+++...+.+.+..+++++++.|++.+ +|++|.+.++++.+... +...|+.++|+++++
T Consensus 187 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 187 VEQIRHQLEHILNEEHIAHEPRALQLLARAA-EGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-TTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc----cCceecHHHHHHHhC
Confidence 9999999999999999999999999999999 99999999999988543 334799999998865
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=2.5e-16 Score=170.73 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=92.0
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecc----------cccCC-
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRG----------TDDII- 298 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~----------~~~~~- 298 (409)
.+++|+||++.++.+ .++.|++.|++.. ..+||++||.+...+.. .....
T Consensus 661 ~~vl~lDEi~~l~~~-------~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~ 733 (854)
T 1qvr_A 661 YSVILFDEIEKAHPD-------VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVF 733 (854)
T ss_dssp SEEEEESSGGGSCHH-------HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CeEEEEecccccCHH-------HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHH
Confidence 368999999999999 9999999999752 35688888864221100 00000
Q ss_pred --CCCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhh---------cCCCCCHHHHHHHHHhcC--CccHHHHHHHHH
Q psy2778 299 --SPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIGT--RSTLRYVVQLLT 364 (409)
Q Consensus 299 --~~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~I~~~s~--~g~~R~al~ll~ 364 (409)
....+.++|++|| .++.+.|++.+++..|+.....+ ..+.++++++++|++.+. .|++|...++++
T Consensus 734 ~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~ 813 (854)
T 1qvr_A 734 KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQ 813 (854)
T ss_dssp HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHH
T ss_pred HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHH
Confidence 1235678999999 78889999999999999876552 135799999999999985 589999999998
Q ss_pred HHHHHH
Q psy2778 365 PAALTA 370 (409)
Q Consensus 365 ~~~~~a 370 (409)
.+...+
T Consensus 814 ~~~~~~ 819 (854)
T 1qvr_A 814 RELETP 819 (854)
T ss_dssp HHTHHH
T ss_pred HHHHHH
Confidence 877544
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=4.3e-16 Score=153.16 Aligned_cols=126 Identities=25% Similarity=0.240 Sum_probs=96.3
Q ss_pred cccccccccccccccCchhhh-HHH-HHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCCC
Q psy2778 244 VLFIDEVHMLDLETFMPHLET-FTY-LHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYN 320 (409)
Q Consensus 244 vl~ide~~~l~~~~~~~~~~~-~~~-L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~~ 320 (409)
+++|||+|.++.. . ... |+..++......+|++++.. .....+.+.+++|+ ..+.++|++
T Consensus 136 vlilDEi~~l~~~-------~~~~~~l~~l~~~~~~~~iI~~t~~~----------~~~~~l~~~l~sr~~~~i~l~~l~ 198 (384)
T 2qby_B 136 IIYLDEVDTLVKR-------RGGDIVLYQLLRSDANISVIMISNDI----------NVRDYMEPRVLSSLGPSVIFKPYD 198 (384)
T ss_dssp EEEEETTHHHHHS-------TTSHHHHHHHHTSSSCEEEEEECSST----------TTTTTSCHHHHHTCCCEEEECCCC
T ss_pred EEEEECHHHhccC-------CCCceeHHHHhcCCcceEEEEEECCC----------chHhhhCHHHHhcCCCeEEECCCC
Confidence 8889999888653 2 333 44444433334556666531 12256778899995 799999999
Q ss_pred HHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 321 QKDMEAIIKLRANT--EGHVLDDEALVTLSEIGTR---STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 321 ~~e~~~il~~~~~~--~~~~i~~~~l~~I~~~s~~---g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
.+++.++++.++.. .+..+++++++.|++.+ . |++|.|+++|+.+...|. +...|+.++|..++.-
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 199 AEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS-AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 99999999988864 45789999999999998 6 999999999999988875 5578999999888753
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=8.8e-16 Score=164.50 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=85.8
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
.+++|+||++.++.+ .++.|++.|++.. ..++|++||.+....... .......++++|++
T Consensus 580 ~~vl~lDEi~~~~~~-------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~-~~~~~~~f~p~l~~ 651 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPD-------VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV-MGELKRAFRPEFIN 651 (758)
T ss_dssp SSEEEEECGGGSCHH-------HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHH-HHHHHHHSCHHHHT
T ss_pred CeEEEEeCccccCHH-------HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHH-HHHHHhhCCHHHHh
Confidence 368999999999999 9999999999732 357888887432100000 00001127899999
Q ss_pred hh-heeecCCCCHHHHHHHHHHHHhh---------cCCCCCHHHHHHHHHh--cCCccHHHHHHHHHHHHHH
Q psy2778 310 RL-LIIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEI--GTRSTLRYVVQLLTPAALT 369 (409)
Q Consensus 310 r~-~~i~~~~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~I~~~--s~~g~~R~al~ll~~~~~~ 369 (409)
|| .++.|+|++.+++.+|+...+.. ..+.++++++++|++. ...|++|..-+.++.+...
T Consensus 652 Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 652 RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVED 723 (758)
T ss_dssp TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHH
T ss_pred hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Confidence 99 89999999999999999876653 2568999999999884 4567777777777766543
No 61
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.69 E-value=1.4e-16 Score=164.15 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCCchhhhhhhheeecCCCCHHHHHHHHHHHHh-----h-----cCCCCCHHHHHHHHH-hcCCccHHHHHHHHHHHHH
Q psy2778 300 PHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRAN-----T-----EGHVLDDEALVTLSE-IGTRSTLRYVVQLLTPAAL 368 (409)
Q Consensus 300 ~~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~-----~-----~~~~i~~~~l~~I~~-~s~~g~~R~al~ll~~~~~ 368 (409)
+..++++|++||.++.+.+|+.++..+|++.... . .++.++++++..|++ .+..+++|..-+.++.++.
T Consensus 234 ~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 234 LATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp TTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred cccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 5688999999999999999999999999987542 2 256889999999877 5555788888888777766
Q ss_pred HHHHh------CCCCccHHHHHHHHH
Q psy2778 369 TAKTN------GRTAISKQDILEVST 388 (409)
Q Consensus 369 ~a~~~------~~~~I~~~~v~~~~~ 388 (409)
.+... +...|+.+++.++++
T Consensus 314 ~aa~~~~~~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 314 KAAKAIVAEERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred HHHHHHHhcCCcceecCHHHHHHHhC
Confidence 55321 345799999988875
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.68 E-value=2.6e-16 Score=152.88 Aligned_cols=131 Identities=22% Similarity=0.265 Sum_probs=102.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC--------------CceEEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
+++||||++.++.+ .++.|++.+|... ..++|.++|. ....++++++
T Consensus 146 ~vl~iDEi~~l~~~-------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~------------~~~~l~~~L~ 206 (350)
T 1g8p_A 146 GYLYIDECNLLEDH-------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP------------EEGDLRPQLL 206 (350)
T ss_dssp EEEEETTGGGSCHH-------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS------------CSCCCCHHHH
T ss_pred CEEEEeChhhCCHH-------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC------------CCCCCCHHHH
Confidence 79999999999998 8999999998741 2334555542 1246889999
Q ss_pred hhhhe-eecCCCC-HHHHHHHHHHH-----------------------------HhhcCCCCCHHHHHHHHHhcCCc---
Q psy2778 309 DRLLI-IRTTPYN-QKDMEAIIKLR-----------------------------ANTEGHVLDDEALVTLSEIGTRS--- 354 (409)
Q Consensus 309 ~r~~~-i~~~~~~-~~e~~~il~~~-----------------------------~~~~~~~i~~~~l~~I~~~s~~g--- 354 (409)
+||.+ +.+.+++ .++..++++.+ ....++.++++++++|++.+ .+
T Consensus 207 ~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~-~~~~~ 285 (350)
T 1g8p_A 207 DRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC-IALGS 285 (350)
T ss_dssp TTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH-HHSSS
T ss_pred hhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHhCC
Confidence 99965 9999984 55554666541 33446799999999999998 44
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhccCh
Q psy2778 355 -TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDA 393 (409)
Q Consensus 355 -~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~ 393 (409)
++|.++++++.|...|..+++..|+.+||.+++...+-.
T Consensus 286 ~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 286 DGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred CCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 789999999999999988888899999999998765443
No 63
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.67 E-value=4.7e-16 Score=153.09 Aligned_cols=87 Identities=15% Similarity=0.272 Sum_probs=67.1
Q ss_pred CCCchhhhhhh-heeecCCCCHHHHHHHHHH----H-------H--hhcCCCCCHHHHHHHHHhcC--CccHHHHHHHHH
Q psy2778 301 HGIPLDLLDRL-LIIRTTPYNQKDMEAIIKL----R-------A--NTEGHVLDDEALVTLSEIGT--RSTLRYVVQLLT 364 (409)
Q Consensus 301 ~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~----~-------~--~~~~~~i~~~~l~~I~~~s~--~g~~R~al~ll~ 364 (409)
+.++++|++|+ .++.|+|++.+++.+++.. . . ...++.++++++++|++.+. .|++|...++++
T Consensus 254 ~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 254 YGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp TTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred cCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 46789999999 8899999999999999962 1 1 12357899999999999973 289999999999
Q ss_pred HHHHHHHHh------CCCCccHHHHHHHH
Q psy2778 365 PAALTAKTN------GRTAISKQDILEVS 387 (409)
Q Consensus 365 ~~~~~a~~~------~~~~I~~~~v~~~~ 387 (409)
.+...+..+ +...|+.++|....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 334 DFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 988754332 12258888886543
No 64
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.65 E-value=6.1e-16 Score=151.62 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=65.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhh-hhhhh-H-HHHHHHHHHHhh-hhcccceEEeccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSS-EIKKT-E-VLMENFRRAIGL-RIKESKEVYEGEVTE 83 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~-~~~~~-e-~l~~~f~~a~~~-~~~~~~ii~iDEid~ 83 (409)
++.++||+||||||||++|+++|+.++. +|+.++++++... |+|.. + .+++.|+.+... ....+++|||||+|.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~--~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~ 127 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDV--PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDK 127 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC--CEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhh
Confidence 6789999999999999999999999985 9999999988754 77775 3 567777665321 234689999999999
Q ss_pred ccccccC
Q psy2778 84 LTPVETE 90 (409)
Q Consensus 84 i~~~~~~ 90 (409)
+.+.+.+
T Consensus 128 l~~~~~~ 134 (363)
T 3hws_A 128 ISRKSDN 134 (363)
T ss_dssp HCCCSSC
T ss_pred hcccccc
Confidence 9876543
No 65
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=3.3e-15 Score=146.37 Aligned_cols=133 Identities=19% Similarity=0.167 Sum_probs=97.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcc-cC-CceEEEecCcceeeecccccCCCCCCCchhhhhhh--heeecCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALES-AI-APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTP 318 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~--~~i~~~~ 318 (409)
.++++||++.+.... ..+.+..|.+.++. .. ...+|++++... ....+...+.+|+ ..+.++|
T Consensus 130 ~vlilDE~~~l~~~~---~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~----------~~~~~~~~~~~r~~~~~i~l~~ 196 (386)
T 2qby_A 130 VVIVLDEIDAFVKKY---NDDILYKLSRINSEVNKSKISFIGITNDVK----------FVDLLDPRVKSSLSEEEIIFPP 196 (386)
T ss_dssp EEEEEETHHHHHHSS---CSTHHHHHHHHHHSCCC--EEEEEEESCGG----------GGGGCTTHHHHTTTTEEEEECC
T ss_pred EEEEEcChhhhhccC---cCHHHHHHhhchhhcCCCeEEEEEEECCCC----------hHhhhCHHHhccCCCeeEEeCC
Confidence 477888877765210 01156666666653 12 344566665321 1134556688998 5799999
Q ss_pred CCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 319 YNQKDMEAIIKLRANTE--GHVLDDEALVTLSEIGTR---STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~~--~~~i~~~~l~~I~~~s~~---g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
++.+++.+++..++... ...++++++++|++.+ . |++|.++++++.+...|..++...|+.+++..+..-
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALA-AREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 99999999999877642 4689999999999998 6 999999999999998888777789999999887753
No 66
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.64 E-value=8.7e-16 Score=155.84 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=95.5
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc-----------CCceEEEecCcceeeecccccCCCCCCCchhhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA-----------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 311 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 311 (409)
+++||||++.++.+ .++.|+..|+.. ..+++|++||... .....++++++|+
T Consensus 111 ~IL~IDEI~r~~~~-------~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp----------e~~~~~~aLldRF 173 (500)
T 3nbx_X 111 EIVFLDEIWKAGPA-------ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP----------EADSSLEALYDRM 173 (500)
T ss_dssp SEEEEESGGGCCHH-------HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC----------CTTCTTHHHHTTC
T ss_pred eeeeHHhHhhhcHH-------HHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC----------CccccHHHHHHHH
Confidence 57888888888777 788888888642 2356688887421 1123457899998
Q ss_pred he-eecCCCCH-HHHHHHHHHHHh-----------------------hcCCCCCHHHHHHHHHhc---------CCccHH
Q psy2778 312 LI-IRTTPYNQ-KDMEAIIKLRAN-----------------------TEGHVLDDEALVTLSEIG---------TRSTLR 357 (409)
Q Consensus 312 ~~-i~~~~~~~-~e~~~il~~~~~-----------------------~~~~~i~~~~l~~I~~~s---------~~g~~R 357 (409)
.. +.+++++. ++..+|++.... ..++.++++++++|+++. .+.|+|
T Consensus 174 ~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R 253 (500)
T 3nbx_X 174 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDR 253 (500)
T ss_dssp CEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHH
T ss_pred HHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchh
Confidence 54 77888876 667777775431 237889999999998876 244899
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHH
Q psy2778 358 YVVQLLTPAALTAKTNGRTAISKQDILE 385 (409)
Q Consensus 358 ~al~ll~~~~~~a~~~~~~~I~~~~v~~ 385 (409)
.++.++..|...|..+|+..|+++||..
T Consensus 254 ~~~~llr~A~A~A~l~gr~~Vt~eDv~~ 281 (500)
T 3nbx_X 254 RWKKAIRLLQASAFFSGRSAVAPVDLIL 281 (500)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCGGGGGG
T ss_pred HHHHHHHHHHHHHhhcCCccccchHHHH
Confidence 9999999999999999999999999983
No 67
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.62 E-value=1.4e-15 Score=142.89 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=58.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh-hhhhhhh-HHHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF-SSEIKKT-EVLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~-~~~~~~~-e~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
..++.++||+||||||||++|+++|+.++. +|+.+++++.. +...+.. ..+.+.|..+. ...+++||+||+|.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF--PFIKICSPDKMIGFSETAKCQAMKKIFDDAY---KSQLSCVVVDDIER 135 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC--SEEEEECGGGCTTCCHHHHHHHHHHHHHHHH---TSSEEEEEECCHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC--CEEEEeCHHHhcCCchHHHHHHHHHHHHHHH---hcCCcEEEEEChhh
Confidence 456689999999999999999999999986 89999876532 2222222 25666777664 24689999999999
Q ss_pred cccc
Q psy2778 84 LTPV 87 (409)
Q Consensus 84 i~~~ 87 (409)
+++.
T Consensus 136 l~~~ 139 (272)
T 1d2n_A 136 LLDY 139 (272)
T ss_dssp HTTC
T ss_pred hhcc
Confidence 8654
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=2.1e-14 Score=141.08 Aligned_cols=130 Identities=19% Similarity=0.275 Sum_probs=105.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-----CceEEEecCcceeeecccccCCCCCCCchhhhhhhh--eee
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-----APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--IIR 315 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~--~i~ 315 (409)
.++++||+|.++.+ .+..|.+.++... ...+|++++... ....+.+.+.+|+. .+.
T Consensus 127 ~vlilDE~~~l~~~-------~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~----------~~~~l~~~~~~r~~~~~i~ 189 (389)
T 1fnn_A 127 MFLVLDDAFNLAPD-------ILSTFIRLGQEADKLGAFRIALVIVGHNDA----------VLNNLDPSTRGIMGKYVIR 189 (389)
T ss_dssp EEEEEETGGGSCHH-------HHHHHHHHTTCHHHHSSCCEEEEEEESSTH----------HHHTSCHHHHHHHTTCEEE
T ss_pred EEEEEECccccchH-------HHHHHHHHHHhCCCCCcCCEEEEEEECCch----------HHHHhCHHhhhcCCCceEE
Confidence 49999999999888 8999999987642 344666665321 11345677899987 699
Q ss_pred cCCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q psy2778 316 TTPYNQKDMEAIIKLRANT--EGHVLDDEALVTLSEIGT--------RSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 385 (409)
Q Consensus 316 ~~~~~~~e~~~il~~~~~~--~~~~i~~~~l~~I~~~s~--------~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~ 385 (409)
++|++.+++.+++..++.. ....+++++++.|++.+. .|++|+++++++.+...|..++...|+.++|..
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~ 269 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 269 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 9999999999999988765 235799999999999985 689999999999999988877878899999988
Q ss_pred HHHh
Q psy2778 386 VSTL 389 (409)
Q Consensus 386 ~~~~ 389 (409)
+...
T Consensus 270 ~~~~ 273 (389)
T 1fnn_A 270 SSKE 273 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 69
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=5.5e-15 Score=141.20 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=77.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.|++|||+|.++.+ +++.|+|.||+|.. .++|++|+. +..+++.++|| +++|++++.
T Consensus 84 kvviIdead~lt~~-------a~naLLk~LEep~~~t~fIl~t~~-------------~~kl~~tI~SR--~~~f~~l~~ 141 (305)
T 2gno_A 84 KYVIVHDCERMTQQ-------AANAFLKALEEPPEYAVIVLNTRR-------------WHYLLPTIKSR--VFRVVVNVP 141 (305)
T ss_dssp EEEEETTGGGBCHH-------HHHHTHHHHHSCCTTEEEEEEESC-------------GGGSCHHHHTT--SEEEECCCC
T ss_pred eEEEeccHHHhCHH-------HHHHHHHHHhCCCCCeEEEEEECC-------------hHhChHHHHce--eEeCCCCCH
Confidence 69999999999999 99999999999865 667777752 45788899999 999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 365 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~ 365 (409)
+++.+.++.++ .++++++ +++ .||+|.|++++..
T Consensus 142 ~~i~~~L~~~~-----~i~~~~~----~~~-~g~~~~al~~l~~ 175 (305)
T 2gno_A 142 KEFRDLVKEKI-----GDLWEEL----PLL-ERDFKTALEAYKL 175 (305)
T ss_dssp HHHHHHHHHHH-----TTHHHHC----GGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCCHHHH----HHH-CCCHHHHHHHHHH
Confidence 99999999877 3677776 556 8999999999864
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.56 E-value=9.8e-15 Score=136.51 Aligned_cols=125 Identities=19% Similarity=0.244 Sum_probs=92.1
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc------------CCceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++||||++.++.+ .+..|++.++.. ....+|+++|..... ......+.+++++|
T Consensus 102 ~~l~lDEi~~l~~~-------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~------~~~~~~~~~~L~~R 168 (265)
T 2bjv_A 102 GTLFLDELATAPMM-------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPA------MVNEGTFRADLLDA 168 (265)
T ss_dssp SEEEEESGGGSCHH-------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHH------HHHHTSSCHHHHHH
T ss_pred cEEEEechHhcCHH-------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHH------HHHcCCccHHHHHh
Confidence 79999999999988 888999988863 245688888753210 00112467889999
Q ss_pred h--heeecCCCCH--HHHHHHHHH----HHhhcCC----CCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCc
Q psy2778 311 L--LIIRTTPYNQ--KDMEAIIKL----RANTEGH----VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378 (409)
Q Consensus 311 ~--~~i~~~~~~~--~e~~~il~~----~~~~~~~----~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I 378 (409)
+ ..+.++|+.. +++..+++. .+...+. .+++++++.|...+..|++|...++++.+...+. ...|
T Consensus 169 l~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i 245 (265)
T 2bjv_A 169 LAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDY 245 (265)
T ss_dssp HCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSS
T ss_pred hcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcC
Confidence 9 4588889876 677766553 3344454 6899999999999889999999999999887653 3457
Q ss_pred cHHHH
Q psy2778 379 SKQDI 383 (409)
Q Consensus 379 ~~~~v 383 (409)
+.+|+
T Consensus 246 ~~~~l 250 (265)
T 2bjv_A 246 PLDDI 250 (265)
T ss_dssp CBCCC
T ss_pred cHHHc
Confidence 76665
No 71
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.54 E-value=1.7e-14 Score=137.77 Aligned_cols=121 Identities=18% Similarity=0.254 Sum_probs=90.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccc----cCCC-------
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTD----DIIS------- 299 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~----~~~~------- 299 (409)
+++|+||++.++.+ .++.|++.+++.. ..++|++||.+...+.... ....
T Consensus 121 ~vl~lDEi~~l~~~-------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~ 193 (311)
T 4fcw_A 121 SVILFDAIEKAHPD-------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFK 193 (311)
T ss_dssp EEEEEETGGGSCHH-------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHH
T ss_pred eEEEEeChhhcCHH-------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHH
Confidence 68999999999888 8999999998754 3557788876311000000 0000
Q ss_pred --CCCCchhhhhhh-heeecCCCCHHHHHHHHHHHHhh---------cCCCCCHHHHHHHHHhcC--CccHHHHHHHHHH
Q psy2778 300 --PHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIGT--RSTLRYVVQLLTP 365 (409)
Q Consensus 300 --~~~~~~~l~~r~-~~i~~~~~~~~e~~~il~~~~~~---------~~~~i~~~~l~~I~~~s~--~g~~R~al~ll~~ 365 (409)
...++++|++|| .++.+.|++.+++.+++.....+ ..+.++++++++|++.+. .|++|...++++.
T Consensus 194 ~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~ 273 (311)
T 4fcw_A 194 VLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQR 273 (311)
T ss_dssp HHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHH
T ss_pred HHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHH
Confidence 225678899999 78899999999999999976543 246799999999999986 5899999999998
Q ss_pred HHHHH
Q psy2778 366 AALTA 370 (409)
Q Consensus 366 ~~~~a 370 (409)
+...+
T Consensus 274 ~~~~~ 278 (311)
T 4fcw_A 274 ELETP 278 (311)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 77644
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=7.4e-14 Score=141.31 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=60.5
Q ss_pred CCchhhhhhhheeecCCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHH
Q psy2778 302 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGT-----RSTLRYVVQLLTPAALTAKT 372 (409)
Q Consensus 302 ~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~~----~~~~i~~~~l~~I~~~s~-----~g~~R~al~ll~~~~~~a~~ 372 (409)
.+++.+++||.++.+.+++.++..++++..+.. .++.++++++.++++++. +.-++.|+.+|+.++..+..
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~ 387 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRL 387 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHh
Confidence 345679999999999999999999999987765 789999999999999862 22378999999998876654
Q ss_pred hC
Q psy2778 373 NG 374 (409)
Q Consensus 373 ~~ 374 (409)
+.
T Consensus 388 ~~ 389 (468)
T 3pxg_A 388 RS 389 (468)
T ss_dssp HT
T ss_pred cc
Confidence 43
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.51 E-value=2.4e-14 Score=136.92 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=93.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.++.+ .+..|++.++... ...+|.+||..... ....-.+.+++++|
T Consensus 98 g~L~LDEi~~l~~~-------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~------~v~~g~fr~~L~~R 164 (304)
T 1ojl_A 98 GTLFLDEIGDISPL-------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAE------EVSAGRFRQDLYYR 164 (304)
T ss_dssp SEEEEESCTTCCHH-------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHH------HHHHTSSCHHHHHH
T ss_pred CEEEEeccccCCHH-------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHH------HHHhCCcHHHHHhh
Confidence 79999999999988 8999999998753 35688888864210 11112356889999
Q ss_pred hh--eeecCCCC--HHHHHHHHHHHHh----hc---CCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 LL--IIRTTPYN--QKDMEAIIKLRAN----TE---GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~~--~i~~~~~~--~~e~~~il~~~~~----~~---~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+- .+.++|+. .+++..++....+ .. ...+++++++.|...+..|++|...++++.+...+. ...|+
T Consensus 165 l~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~ 241 (304)
T 1ojl_A 165 LNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLT---GEYIS 241 (304)
T ss_dssp HSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBC
T ss_pred cCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC---CCccc
Confidence 84 46788888 5777777764332 22 357999999999999989999999999999987753 24566
Q ss_pred HHHHH
Q psy2778 380 KQDIL 384 (409)
Q Consensus 380 ~~~v~ 384 (409)
.+++.
T Consensus 242 ~~~l~ 246 (304)
T 1ojl_A 242 ERELP 246 (304)
T ss_dssp GGGSC
T ss_pred HHhhh
Confidence 66653
No 74
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.50 E-value=9.8e-14 Score=134.71 Aligned_cols=129 Identities=14% Similarity=0.013 Sum_probs=109.1
Q ss_pred Cccccccccc-ccccccCchhhhHHHHHHHhcccCC-ceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCC
Q psy2778 243 GVLFIDEVHM-LDLETFMPHLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 320 (409)
Q Consensus 243 gvl~ide~~~-l~~~~~~~~~~~~~~L~~~~e~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~ 320 (409)
.+++|||+|. ++.+ .++.|.+.+|++.. .++|+.++.. +.....+.+++.+.+||.+++|.+++
T Consensus 78 kvvii~~~~~kl~~~-------~~~aLl~~le~p~~~~~~il~~~~~-------~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 78 QTLLLLLPENGPNAA-------INEQLLTLTGLLHDDLLLIVRGNKL-------SKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp EEEEEECCSSCCCTT-------HHHHHHHHHTTCBTTEEEEEEESCC-------CTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred eEEEEECCCCCCChH-------HHHHHHHHHhcCCCCeEEEEEcCCC-------ChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 5999999999 9988 99999999998754 5566666421 01122467888999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q psy2778 321 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 389 (409)
Q Consensus 321 ~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~ 389 (409)
..++.+.++.+++++|+.++++++++|++.+ +||+|.+.+.|+.+..++ +...||.++|..+.+.
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~-~gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCY-EGNLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSS-TTCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-chHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999 999999999999988775 2347999999887654
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=2.3e-14 Score=148.90 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=102.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC--------------CceEEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
|++||||++.++.+ .++.|+..||... ...+|.++|.......+..+...-..+|++++
T Consensus 393 gil~IDEid~l~~~-------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl 465 (595)
T 3f9v_A 393 GIAVIDEIDKMRDE-------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTIL 465 (595)
T ss_dssp SEECCTTTTCCCSH-------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSG
T ss_pred CcEEeehhhhCCHh-------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHH
Confidence 89999999999999 9999999998643 23466677653110000000011127899999
Q ss_pred hhh-heeecCCCCHHHHHHHHHHHHhhc-------------------------CCCCCHHHHHHHHHh------------
Q psy2778 309 DRL-LIIRTTPYNQKDMEAIIKLRANTE-------------------------GHVLDDEALVTLSEI------------ 350 (409)
Q Consensus 309 ~r~-~~i~~~~~~~~e~~~il~~~~~~~-------------------------~~~i~~~~l~~I~~~------------ 350 (409)
||+ +++.+.++...+...+++...... .-.+++++.+.|.+.
T Consensus 466 ~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~ 545 (595)
T 3f9v_A 466 SRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETP 545 (595)
T ss_dssp GGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCS
T ss_pred hhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 999 677777776666555555443321 226788888888877
Q ss_pred --cCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 351 --GTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 351 --s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
+..+++|...++++.|..+|..+++..|+.+||.++..++.
T Consensus 546 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 546 DSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp SSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999998753
No 76
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.44 E-value=5.2e-13 Score=139.35 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=100.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC----------------------CceEEEecCcceeeecccccCCCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI----------------------APIVIFATNRGRCLVRGTDDIISP 300 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~----------------------~~~~i~~~~~~~~~~~~~~~~~~~ 300 (409)
|++|+||++.++++ .++.|++.||+.. ...+|++||+. ..
T Consensus 203 gvL~LDEi~~l~~~-------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~-----------~~ 264 (604)
T 3k1j_A 203 GVLFIDEIATLSLK-------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD-----------TV 264 (604)
T ss_dssp SEEEETTGGGSCHH-------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-----------HH
T ss_pred CEEEEechhhCCHH-------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-----------HH
Confidence 89999999999999 9999999999531 23478888753 12
Q ss_pred CCCchhhhhhhh----eeecCC---CCHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhcC--Cc-------cHHHH
Q psy2778 301 HGIPLDLLDRLL----IIRTTP---YNQKDMEAIIKLRANTE-----GHVLDDEALVTLSEIGT--RS-------TLRYV 359 (409)
Q Consensus 301 ~~~~~~l~~r~~----~i~~~~---~~~~e~~~il~~~~~~~-----~~~i~~~~l~~I~~~s~--~g-------~~R~a 359 (409)
+.++++|++||- .+.+.+ .+.+.+..+++..++.. ...++++++..|.+.+. .| ++|.+
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 457899999994 455543 46667777777655432 26899999999988652 33 69999
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 360 VQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 360 l~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
.++++.|...|..+++..|+.+||.++..
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 99999999999888899999999999985
No 77
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.35 E-value=1.1e-12 Score=115.10 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchhh--hhhhhhhH-HHHHHHHHHHhhhhcccceE
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEVF--SSEIKKTE-VLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l~--~~~~~~~e-~l~~~f~~a~~~~~~~~~ii 76 (409)
.+++++|+||||||||++|+++++.+.. ..+++.++..++. ..+.+... .+.+.+..+. +...+++|
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vl 119 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA--KQEGNVIL 119 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHH--HSTTTEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHh--hcCCCeEE
Confidence 3578999999999999999999999721 2478888887765 23444444 4566666553 23457899
Q ss_pred Eecccccccccc
Q psy2778 77 YEGEVTELTPVE 88 (409)
Q Consensus 77 ~iDEid~i~~~~ 88 (409)
||||+|.+.+.+
T Consensus 120 ~iDe~~~l~~~~ 131 (195)
T 1jbk_A 120 FIDELHTMVGAG 131 (195)
T ss_dssp EEETGGGGTT--
T ss_pred EEeCHHHHhccC
Confidence 999999997654
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.31 E-value=1.7e-11 Score=121.33 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=89.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC-----Cce-EEEecCcceeeecccccCCCCCCCc---hhhhhhh-h
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI-----API-VIFATNRGRCLVRGTDDIISPHGIP---LDLLDRL-L 312 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~-----~~~-~i~~~~~~~~~~~~~~~~~~~~~~~---~~l~~r~-~ 312 (409)
-+++|||+|.++... ....+.+..|.+.+++.. +++ +|++++.... ...+. +.+.+++ .
T Consensus 140 ~llvlDe~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~----------~~~l~~~~~~~~~~~~~ 208 (412)
T 1w5s_A 140 LLVILDEFQSMLSSP-RIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRA----------LSYMREKIPQVESQIGF 208 (412)
T ss_dssp EEEEEESTHHHHSCT-TSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHH----------HHHHHHHCHHHHTTCSE
T ss_pred EEEEEeCHHHHhhcc-CcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccH----------HHHHhhhcchhhhhcCC
Confidence 489999999886400 000115555666665432 454 4444432100 00111 2233443 2
Q ss_pred eeecCCCCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q psy2778 313 IIRTTPYNQKDMEAIIKLRANTE--GHVLDDEALVTLSEIGTR------STLRYVVQLLTPAALTAKTNGRTAISKQDIL 384 (409)
Q Consensus 313 ~i~~~~~~~~e~~~il~~~~~~~--~~~i~~~~l~~I~~~s~~------g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~ 384 (409)
.+.++|++.++..+++..++... ...++++++..|++.+ + |++|+++.+++.+...|...+...|+.+++.
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY-GEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH-CGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 38999999999999998776543 2468999999999999 7 9999999999998887777677789988887
Q ss_pred HHHH
Q psy2778 385 EVST 388 (409)
Q Consensus 385 ~~~~ 388 (409)
.+..
T Consensus 288 ~~~~ 291 (412)
T 1w5s_A 288 KAVS 291 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 79
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.27 E-value=7.4e-12 Score=109.43 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=57.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC--------CccEEEecCchhhhh--hhhhhH-HHHHHHHHHHhhhhcccceEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN--------KVPFCPMVGSEVFSS--EIKKTE-VLMENFRRAIGLRIKESKEVY 77 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~--------~~~~v~i~~~~l~~~--~~~~~e-~l~~~f~~a~~~~~~~~~ii~ 77 (409)
++++||+||||||||++|+++|+.+.. ..+++.++...+... +.+... .+.+.+..+.. ...|.+||
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~ 120 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQD--AEGQVVMF 120 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHH--TTTSEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHh--cCCceEEE
Confidence 578999999999999999999999821 247888887766532 334433 45666665542 24678999
Q ss_pred eccccccccccc
Q psy2778 78 EGEVTELTPVET 89 (409)
Q Consensus 78 iDEid~i~~~~~ 89 (409)
+||++.+.+.+.
T Consensus 121 iDe~~~l~~~~~ 132 (187)
T 2p65_A 121 IDEIHTVVGAGA 132 (187)
T ss_dssp ETTGGGGSSSSS
T ss_pred EeCHHHhccccc
Confidence 999999976543
No 80
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.20 E-value=1.4e-10 Score=115.11 Aligned_cols=153 Identities=17% Similarity=0.085 Sum_probs=106.4
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc---------CCce-EEEecCcceeeecccccCCCCCCCchhhhhhh-
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA---------IAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 311 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~---------~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~- 311 (409)
|++|+||++.++++ .+.+|+..||+. ..++ |+.++|... ......+. .-..+|..++||+
T Consensus 302 Gvl~lDEIn~~~~~-------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFD 372 (506)
T 3f8t_A 302 GILAVDHLEGAPEP-------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFD 372 (506)
T ss_dssp SEEEEECCTTCCHH-------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCS
T ss_pred CeeehHhhhhCCHH-------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc-ccCCCCCc-cccCCChHHhhhee
Confidence 89999999999999 999999999964 2344 444555321 11000000 1237899999999
Q ss_pred heeecCC--------------CCHHHHHHHHHHHH-hhcCCCCCHHHHHHHHHh-----------------cCCccHHHH
Q psy2778 312 LIIRTTP--------------YNQKDMEAIIKLRA-NTEGHVLDDEALVTLSEI-----------------GTRSTLRYV 359 (409)
Q Consensus 312 ~~i~~~~--------------~~~~e~~~il~~~~-~~~~~~i~~~~l~~I~~~-----------------s~~g~~R~a 359 (409)
+++-+.. ++.+++.+.+...- ......+++++.++|.++ +..-++|..
T Consensus 373 Li~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~l 452 (506)
T 3f8t_A 373 LIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQL 452 (506)
T ss_dssp EEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred eEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHH
Confidence 5443322 34455555555332 234788999999998654 112379999
Q ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHhccChHHHHHHHHHhh
Q psy2778 360 VQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARILTENK 404 (409)
Q Consensus 360 l~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 404 (409)
+.+++.|..+|..+++..|+++||+++..+|..+-+.+.|+.+++
T Consensus 453 eaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~tg 497 (506)
T 3f8t_A 453 ESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGD 497 (506)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999988887777776544
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.16 E-value=7.6e-12 Score=105.87 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=50.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i~~ 86 (409)
+.++||+||||||||++|+++++..+ +|+.++++++...+ ....+..+ .+.++|+||+|.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~------~~~~~~~a------~~~~l~lDei~~l~~ 89 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDM------PMELLQKA------EGGVLYVGDIAQYSR 89 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHC------HHHHHHHT------TTSEEEEEECTTCCH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHh------hhhHHHhC------CCCeEEEeChHHCCH
Confidence 56899999999999999999999876 89999998876544 22334433 468999999999954
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.08 E-value=8.4e-10 Score=118.12 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=52.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc-CCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccccc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHEL-GNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l-~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i~~ 86 (409)
++||+||||||||++|+++|+.+ +...+|+.++++++...+......+.+.++ ...+++||+||++.+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~------~~~~~vl~lDEi~~~~~ 593 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR------RKPYSVVLLDAIEKAHP 593 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH------HCSSSEEEEECGGGSCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH------hCCCeEEEEeCccccCH
Confidence 79999999999999999999997 334599999999887665543223333332 23578999999998843
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.08 E-value=9.2e-11 Score=99.32 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i~~ 86 (409)
.+.++||+||||||||++|+++++.... ..+|+ ++++.+... ......+..+ .+++||+||+|.+.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~~~~~~a------~~g~l~ldei~~l~~ 90 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLNDFIALA------QGGTLVLSHPEHLTR 90 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHHHHHHHH------TTSCEEEECGGGSCH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhhcHHHHc------CCcEEEEcChHHCCH
Confidence 3578999999999999999999998622 34888 998876544 1122344444 458999999999954
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.08 E-value=1e-09 Score=117.43 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=53.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhh------------hhhhhH--HHHHHHHHHHhhhhccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSS------------EIKKTE--VLMENFRRAIGLRIKES 73 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~------------~~~~~e--~l~~~f~~a~~~~~~~~ 73 (409)
|..++||+||||||||++|+++|+.++. +++.++++++... |+|..+ .+.+.++. ..+
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~~--~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~------~~~ 558 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK------HPH 558 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH------CSS
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcC--CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh------CCC
Confidence 3458999999999999999999999975 8999998876432 555433 34444433 357
Q ss_pred ceEEecccccccc
Q psy2778 74 KEVYEGEVTELTP 86 (409)
Q Consensus 74 ~ii~iDEid~i~~ 86 (409)
++||+||++.+.+
T Consensus 559 ~vl~lDEi~~~~~ 571 (758)
T 1r6b_X 559 AVLLLDEIEKAHP 571 (758)
T ss_dssp EEEEEETGGGSCH
T ss_pred cEEEEeCccccCH
Confidence 8999999998743
No 85
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.02 E-value=1.7e-09 Score=105.90 Aligned_cols=115 Identities=28% Similarity=0.290 Sum_probs=89.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccC------------CceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|.+|+||++.++.+ .+..|++.+|+.. ...+|.+||.... .......+.++|+.|
T Consensus 224 gtlfldei~~l~~~-------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~------~~v~~g~fr~dL~~r 290 (368)
T 3dzd_A 224 GTLFLDEVGELDQR-------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE------EEIKKGNFREDLYYR 290 (368)
T ss_dssp SEEEEETGGGSCHH-------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH------HHHHTTSSCHHHHHH
T ss_pred CeEEecChhhCCHH-------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH------HHHHcCCccHHHHHH
Confidence 89999999999999 9999999998742 2348888886532 112234567789999
Q ss_pred hhe--eecCCCCH--HHHHHHHHHHHh----hcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 311 LLI--IRTTPYNQ--KDMEAIIKLRAN----TEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 311 ~~~--i~~~~~~~--~e~~~il~~~~~----~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
+-+ ++++|+.+ +++..++....+ ..+ ..+++++++.+..++.-|+.|...++++++...+
T Consensus 291 l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 291 LSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred hCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 965 56889887 788777665433 223 4699999999999999999999999999998765
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.95 E-value=1.9e-09 Score=106.28 Aligned_cols=127 Identities=23% Similarity=0.248 Sum_probs=95.7
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc------------CCceEEEecCcceeeecccccCCCCCCCchhhhhh
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 310 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 310 (409)
|++|+||++.++.+ .+..|.+.+++. ....+|.+||..... ....-.+.++++.|
T Consensus 233 gtlfldei~~l~~~-------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~------~~~~g~fr~dl~~r 299 (387)
T 1ny5_A 233 GTLFLDEIGELSLE-------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKE------LVKEGKFREDLYYR 299 (387)
T ss_dssp SEEEEESGGGCCHH-------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHH------HHHTTSSCHHHHHH
T ss_pred cEEEEcChhhCCHH-------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHH------HHHcCCccHHHHHh
Confidence 89999999999999 999999999873 234588888865321 11233457788888
Q ss_pred hh--eeecCCCCH--HHHHHHHHHHH----hhcC---CCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCcc
Q psy2778 311 LL--IIRTTPYNQ--KDMEAIIKLRA----NTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 379 (409)
Q Consensus 311 ~~--~i~~~~~~~--~e~~~il~~~~----~~~~---~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~ 379 (409)
+- .+.++|+-+ +++..++.... .+.+ ..+++++++.+.....-|+.|.--++++++...+. ...|+
T Consensus 300 l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~---~~~i~ 376 (387)
T 1ny5_A 300 LGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE---GKFID 376 (387)
T ss_dssp HTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC---SSEEC
T ss_pred hcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC---CCcCc
Confidence 85 467788765 77777666433 2333 34899999999999999999999999999988763 24788
Q ss_pred HHHHHH
Q psy2778 380 KQDILE 385 (409)
Q Consensus 380 ~~~v~~ 385 (409)
.+++..
T Consensus 377 ~~~l~~ 382 (387)
T 1ny5_A 377 RGELSC 382 (387)
T ss_dssp HHHHHH
T ss_pred HHHCcH
Confidence 888753
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.81 E-value=3.4e-09 Score=119.99 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=58.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCC-cc--EEEecC--chhh--------hhhhhh----hH-HHHHHHHHHHhhh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNK-VP--FCPMVG--SEVF--------SSEIKK----TE-VLMENFRRAIGLR 69 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~-~~--~v~i~~--~~l~--------~~~~~~----~e-~l~~~f~~a~~~~ 69 (409)
.++.+|+|||||||||++|.++|.+.... -+ |+.+.. .+++ ++|+++ +| .++.+|..|.
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar--- 1157 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR--- 1157 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH---
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH---
Confidence 34559999999999999999999876321 14 444443 3334 566677 67 6778887774
Q ss_pred hcccceEEeccccccccccc
Q psy2778 70 IKESKEVYEGEVTELTPVET 89 (409)
Q Consensus 70 ~~~~~ii~iDEid~i~~~~~ 89 (409)
...||++|+||+++|++.+.
T Consensus 1158 ~~~~~~i~~d~~~al~~~~~ 1177 (1706)
T 3cmw_A 1158 SGAVDVIVVDSVAALTPKAE 1177 (1706)
T ss_dssp HTCCSEEEESCGGGCCCHHH
T ss_pred hcCCeEEEeCchHhcCcccc
Confidence 56899999999999999854
No 88
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.79 E-value=2.1e-08 Score=108.53 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhh------------hhhhhHHHHHHHHHHHhhhhcccceE
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSS------------EIKKTEVLMENFRRAIGLRIKESKEV 76 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~------------~~~~~e~l~~~f~~a~~~~~~~~~ii 76 (409)
.++||+||||||||++|++||+.+.. ..+|+.++++++... |+|..+ ...|..+. +...+++|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~--~~~~~~vl 664 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAV--RRRPYSVI 664 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHH--HHCSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHH--HhCCCeEE
Confidence 58999999999999999999999822 359999998765432 223221 01122222 12346899
Q ss_pred Eecccccccc
Q psy2778 77 YEGEVTELTP 86 (409)
Q Consensus 77 ~iDEid~i~~ 86 (409)
|+||++.+.+
T Consensus 665 ~lDEi~~l~~ 674 (854)
T 1qvr_A 665 LFDEIEKAHP 674 (854)
T ss_dssp EESSGGGSCH
T ss_pred EEecccccCH
Confidence 9999998743
No 89
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.70 E-value=9.1e-08 Score=88.63 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=32.5
Q ss_pred CCchhhhhhhheeecC--------CCCHHHHHHHHHHHHhhcCCCCCHH
Q psy2778 302 GIPLDLLDRLLIIRTT--------PYNQKDMEAIIKLRANTEGHVLDDE 342 (409)
Q Consensus 302 ~~~~~l~~r~~~i~~~--------~~~~~e~~~il~~~~~~~~~~i~~~ 342 (409)
..-..|.|||.+++|. +++.++....++ .++.+.++++++
T Consensus 213 ~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~~ 260 (267)
T 1u0j_A 213 EHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEHE 260 (267)
T ss_dssp TTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCCC
T ss_pred hhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCccc
Confidence 4455699999999999 899999999999 447777776543
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.69 E-value=1.6e-08 Score=89.94 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=47.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhhH--HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKTE--VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~e--~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
++++|+||||||||++|+++++.+.. ..+++.++++++......... .+.+.+... ..+.+|+|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYI-----KKVPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHH-----HHSSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHh-----cCCCEEEEcCCCCC
Confidence 79999999999999999999998832 247777777766543322110 112222222 24579999999765
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.66 E-value=3.6e-07 Score=87.65 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=69.2
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~~~ 321 (409)
-+++|||+|.++...-....+...+|...++......++++........ ...........+..|. ..+++.|++.
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~----~~l~~~~~~~~l~~~~~~~i~l~pl~~ 205 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLH----DFLKITDYESPLYGRIAGEVLVKPFDK 205 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHH----HHHCTTCTTSTTTTCCCEEEECCCCCH
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHH----HHHhhcCCCCccccCccceeeCCCCCH
Confidence 4889999998874000000114556655555532223333322110000 0000001111244455 4799999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 364 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~ 364 (409)
+|..+++.......+.+++++.+..|...+ +|.|.+...+..
T Consensus 206 ~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t-gG~P~~l~~~~~ 247 (350)
T 2qen_A 206 DTSVEFLKRGFREVNLDVPENEIEEAVELL-DGIPGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 999999998777778889999999999999 999976554443
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.66 E-value=3.3e-08 Score=83.95 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i~~ 86 (409)
++..++|+||+|+|||+++++++..+.. ....+.+++.++... + ....|.++++||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------~---~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------D---AAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------G---GGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------H---HHhCCCEEEEeCccccCh
Confidence 5678999999999999999999998821 125777887766543 0 124689999999988643
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.63 E-value=3.4e-08 Score=93.75 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=49.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhH-HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE-VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e-~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
|..+++.++|+||||||||++|.++|...+.++.|+.+...+..+.+....+ .+..+++... ..+ +||||+++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~----~~~-LLVIDsI~a 193 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML----QHR-VIVIDSLKN 193 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH----HCS-EEEEECCTT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh----hCC-EEEEecccc
Confidence 3445566899999999999999999988665567777722222222222233 3333333332 123 999999999
Q ss_pred cccccc
Q psy2778 84 LTPVET 89 (409)
Q Consensus 84 i~~~~~ 89 (409)
+.....
T Consensus 194 L~~~~~ 199 (331)
T 2vhj_A 194 VIGAAG 199 (331)
T ss_dssp TC----
T ss_pred cccccc
Confidence 966543
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.62 E-value=2.2e-08 Score=87.48 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC--CCccEEEecCchhhhhhhhhhH--HHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG--NKVPFCPMVGSEVFSSEIKKTE--VLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~--~~~~~v~i~~~~l~~~~~~~~e--~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
++.+++|+||||||||+++++++..+. ....++.++..++......... .....+.. ...|.+|++||++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~llilDE~~~ 111 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT-----VLNSPVLVLDDLGS 111 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH-----HHTCSEEEEETCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH-----hcCCCEEEEeCCCC
Confidence 467999999999999999999999872 1124555666555433221111 00111221 24789999999985
Q ss_pred c
Q psy2778 84 L 84 (409)
Q Consensus 84 i 84 (409)
.
T Consensus 112 ~ 112 (180)
T 3ec2_A 112 E 112 (180)
T ss_dssp S
T ss_pred C
Confidence 4
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.59 E-value=2.6e-07 Score=109.11 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=30.0
Q ss_pred CCCchhhhhhhheeecCCCCHHHHHHHHHHHHh
Q psy2778 301 HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRAN 333 (409)
Q Consensus 301 ~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~~ 333 (409)
+.+++.+++||.++.++.++.+++..|+.....
T Consensus 1400 ~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1400 IPMSERFTRHAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHH
T ss_pred ccCChhhhheeeEEEeCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999997664
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.58 E-value=9.8e-07 Score=84.72 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=66.9
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~~~ 321 (409)
-+++|||+|.++... ..+...+|....+......+|+++....... ...........+..|. ..+.+.|++.
T Consensus 139 ~vlvlDe~~~~~~~~---~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~----~~l~~~~~~~~l~~r~~~~i~l~~l~~ 211 (357)
T 2fna_A 139 VIIVLDEAQELVKLR---GVNLLPALAYAYDNLKRIKFIMSGSEMGLLY----DYLRVEDPESPLFGRAFSTVELKPFSR 211 (357)
T ss_dssp EEEEEETGGGGGGCT---TCCCHHHHHHHHHHCTTEEEEEEESSHHHHH----HHTTTTCTTSTTTTCCCEEEEECCCCH
T ss_pred eEEEEECHHHhhccC---chhHHHHHHHHHHcCCCeEEEEEcCchHHHH----HHHhccCCCCccccCccceeecCCCCH
Confidence 488999999886410 0114566655555432233444432210000 0000001112245565 5799999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHH
Q psy2778 322 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 365 (409)
Q Consensus 322 ~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~ 365 (409)
+|..+++.......+.+.++. ..|...+ +|.|.+...+...
T Consensus 212 ~e~~~~l~~~~~~~~~~~~~~--~~i~~~t-~G~P~~l~~~~~~ 252 (357)
T 2fna_A 212 EEAIEFLRRGFQEADIDFKDY--EVVYEKI-GGIPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCCH--HHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcH--HHHHHHh-CCCHHHHHHHHHH
Confidence 999999998776667766654 8888899 9999876655543
No 97
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=98.49 E-value=2.7e-08 Score=75.86 Aligned_cols=90 Identities=34% Similarity=0.385 Sum_probs=76.5
Q ss_pred hhhhcccceEEecccccccccccCCCCCCccchhhhHHHhhhcccCcccccCChHHHHHHhhhccccCcEEEEEcccccc
Q psy2778 67 GLRIKESKEVYEGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEKVEVGDVIYIEANSGAV 146 (409)
Q Consensus 67 ~~~~~~~~ii~iDEid~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~~~i~~~~~i~i~at~~~~ 146 (409)
+++.++..-++..|+-.|.+.+..+. +.. ....+.|+|.++++.|+++++|+++|+++++..||+|+|.+.+..+
T Consensus 4 GvRIkE~keVyEGEV~ei~~~~~~~~---~~~--~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V 78 (95)
T 2cqa_A 4 GSSGKEETEIIEGEVVEIQIDRPATG---TGS--KVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKI 78 (95)
T ss_dssp CCSCCCCCSEEEEEEEEEEEECTTSS---SSS--CEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEE
T ss_pred EEEEEEEEEEEEEEEEEEEEeecCCC---Ccc--eEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEE
Confidence 45667788899999999988776553 222 2223578999999999999999999999999999999999999999
Q ss_pred cccCccccccccccc
Q psy2778 147 KRQGRSDTFAAEFDL 161 (409)
Q Consensus 147 ~~~~~~~~~~~rfd~ 161 (409)
.++||++.++..||.
T Consensus 79 ~klGRs~~~a~~yDl 93 (95)
T 2cqa_A 79 SKLGRSFTRARSGPS 93 (95)
T ss_dssp EEEECCCCCCCCCSC
T ss_pred EEEEEeecccccccc
Confidence 999999988888884
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.45 E-value=7.8e-08 Score=91.70 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC-C-CccEEEecCchhhhhhhhhh-H-HHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG-N-KVPFCPMVGSEVFSSEIKKT-E-VLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~-~-~~~~v~i~~~~l~~~~~~~~-e-~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
+.+++|+||||||||++|.++|+++. . ..+++.++.+++........ . .+.+.+.. ...+.+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA-----VKNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH-----HHTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH-----hcCCCEEEEcCCCCC
Confidence 57999999999999999999999774 1 24677777776654332211 0 11111111 235679999999765
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.44 E-value=1.1e-07 Score=84.27 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.+++|||||||||||++|.++|+.+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999965
No 100
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.39 E-value=1.3e-06 Score=81.77 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=95.9
Q ss_pred CCcccccccccccccc---c----CchhhhHHHHHHHhcc--cC-CceEEEecCcceeeecccccCCCCCCCchhhhh--
Q psy2778 242 PGVLFIDEVHMLDLET---F----MPHLETFTYLHRALES--AI-APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 309 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~---~----~~~~~~~~~L~~~~e~--~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 309 (409)
++++||||++.+.... . ....+.+..+...++. .. ..++|.+||. +..+++.+++
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~-------------~~~l~~~l~~~~ 177 (285)
T 3h4m_A 111 PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR-------------PDILDPAILRPG 177 (285)
T ss_dssp SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC-------------GGGBCHHHHSTT
T ss_pred CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC-------------chhcCHHHcCCC
Confidence 4699999999873210 0 0012233334444432 22 3445555543 4567788888
Q ss_pred hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q psy2778 310 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 388 (409)
Q Consensus 310 r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~ 388 (409)
|+ ..+.+++++.++..++++..+...++. ++..+..|+..+.+.++|...+++..|...|..+++..|+.+|+.+++.
T Consensus 178 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 178 RFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp SEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 77 479999999999999999888776654 3344788888885558999999999999999888888999999999986
Q ss_pred hc
Q psy2778 389 LF 390 (409)
Q Consensus 389 ~~ 390 (409)
-+
T Consensus 257 ~~ 258 (285)
T 3h4m_A 257 KI 258 (285)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 101
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.35 E-value=2e-06 Score=82.36 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=87.5
Q ss_pred cCCccccccccccccccc---C-chhhhHHHHHHHhccc---CC-ceEEEecCcceeeecccccCCCCCCCchhhhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETF---M-PHLETFTYLHRALESA---IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 311 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~---~-~~~~~~~~L~~~~e~~---~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~- 311 (409)
.++++||||++.+....- . ...+..+.|+..++.. .. .+||.+||. +..+++.+++||
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~-------------~~~ld~al~~Rf~ 176 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI-------------PWQLDSAIRRRFE 176 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC-------------GGGSCHHHHHHCC
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC-------------hhhCCHHHHcccC
Confidence 457999999998865200 0 0012356666766632 33 445556653 456788999999
Q ss_pred heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 312 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
..+.+++++.++..++++..+...+..++++.++.|++.+.+.+++..-+++..|...|.
T Consensus 177 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~ 236 (322)
T 3eie_A 177 RRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 236 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988888999999999999955588888888887766553
No 102
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.35 E-value=4.1e-06 Score=81.34 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=87.6
Q ss_pred cCCccccccccccccccc---C-chhhhHHHHHHHhcc----cCCceEEEecCcceeeecccccCCCCCCCchhhhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETF---M-PHLETFTYLHRALES----AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 311 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~---~-~~~~~~~~L~~~~e~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~- 311 (409)
.++++||||++.+....- . ...+..+.|+..|+. ....+||.+||. +..+++.+++||
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~-------------~~~ld~al~rRf~ 209 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI-------------PWQLDSAIRRRFE 209 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC-------------GGGSCHHHHHTCC
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC-------------cccCCHHHHcccC
Confidence 457999999998864200 0 001235666666653 233455666653 456778899999
Q ss_pred heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 312 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
..+.+.+++.++..++++..+...+..+++..++.|++.+.+.++|..-+++..|...|.
T Consensus 210 ~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 210 RRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 678999999999999999999888888899999999999944488888889988887664
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.28 E-value=9.7e-07 Score=101.26 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=53.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCc--hhhhhhhh------------hhH-HHHHHHHHHH
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGS--EVFSSEIK------------KTE-VLMENFRRAI 66 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~--~l~~~~~~------------~~e-~l~~~f~~a~ 66 (409)
|..++++++|+||||||||+||.++|.+. |.++.|+....+ .++....| ..+ .+..+++.+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv- 1501 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1501 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH-
Confidence 45678899999999999999999998876 443445544432 22222222 223 233333333
Q ss_pred hhhhcccceEEecccccccccc
Q psy2778 67 GLRIKESKEVYEGEVTELTPVE 88 (409)
Q Consensus 67 ~~~~~~~~ii~iDEid~i~~~~ 88 (409)
+..+|++|||||++.+.+.+
T Consensus 1502 --r~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1502 --RSGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp --HHTCCSEEEESCGGGCCCHH
T ss_pred --hcCCCCEEEEcChhHhcccc
Confidence 34689999999999998853
No 104
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.23 E-value=2.3e-06 Score=78.85 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=85.1
Q ss_pred CCccccccccccccccc--------CchhhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh-
Q psy2778 242 PGVLFIDEVHMLDLETF--------MPHLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 309 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~--------~~~~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 309 (409)
++++||||++.+....- ....+.+..|...++.. ...++|.+||. +..+++.+++
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~-------------~~~ld~~l~~~ 165 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR-------------ADILDGALMRP 165 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC-------------GGGGGSGGGST
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCC-------------hhhcCHHHhcC
Confidence 57999999998832100 00112334444444432 23455666653 2345566777
Q ss_pred -hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 -RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 -r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..+.+++++.++..++++..++..++..+++. +..+++.+.+-++|...+++..|...|..++...|+.+|+..+
T Consensus 166 ~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a 245 (262)
T 2qz4_A 166 GRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYA 245 (262)
T ss_dssp TSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHH
T ss_pred CcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 88 67889999999999999999998888887764 5889998844477888888888888777677788999999888
Q ss_pred HH
Q psy2778 387 ST 388 (409)
Q Consensus 387 ~~ 388 (409)
+.
T Consensus 246 ~~ 247 (262)
T 2qz4_A 246 VE 247 (262)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 105
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.19 E-value=1.9e-06 Score=77.09 Aligned_cols=52 Identities=23% Similarity=0.487 Sum_probs=39.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHH
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAI 66 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~ 66 (409)
.|+|.||||+||+|.|+.||+.+| +..++..+++...+.....+.+.++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g----~~~istGdllR~~i~~~t~lg~~~~~~~ 53 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG----FVHISTGDILREAVQKGTPLGKKAKEYM 53 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----CEEEEHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CeEEcHHHHHHHHHHhcChhhhhHHHHH
Confidence 478999999999999999999986 5678888888766654444444444433
No 106
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.19 E-value=3.7e-05 Score=91.13 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=51.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
..+.++.||||||||.+++++|+.+|. +++.+++++-... ..+.+.|..+. ..++.+++||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~--~~v~~nc~e~ld~-----~~lg~~~~g~~----~~Gaw~~~DE~nr~ 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGR--VVVVFNCDDSFDY-----QVLSRLLVGIT----QIGAWGCFDEFNRL 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTC--CCEEEETTSSCCH-----HHHHHHHHHHH----HHTCEEEEETTTSS
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCC--cEEEEECCCCCCh-----hHhhHHHHHHH----hcCCEeeehhhhhc
Confidence 468999999999999999999999997 8899999764431 23345666554 34689999999987
No 107
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.17 E-value=1.9e-05 Score=75.50 Aligned_cols=117 Identities=18% Similarity=0.138 Sum_probs=87.1
Q ss_pred cCCcccccccccccccccC---ch-hhhHHHHHHHhccc----CCceEEEecCcceeeecccccCCCCCCCchhhhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETFM---PH-LETFTYLHRALESA----IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 311 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~---~~-~~~~~~L~~~~e~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~- 311 (409)
.++++||||++.+....-. .. .+..+.|...++.. ...+||.+||. |..+++.+++||
T Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~-------------~~~ld~al~rRf~ 171 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI-------------PWVLDSAIRRRFE 171 (322)
T ss_dssp SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC-------------TTTSCHHHHHTCC
T ss_pred CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC-------------cccCCHHHHhhcC
Confidence 3579999999988442100 01 12355666666642 22455556653 567888999999
Q ss_pred heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Q psy2778 312 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 370 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a 370 (409)
..+.+++++.++..++++..+...+..+++..++.|++.+.+.+++..-+++..|...|
T Consensus 172 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 172 KRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 67999999999999999998988888889999999999995557888888888877655
No 108
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.16 E-value=9.2e-06 Score=78.86 Aligned_cols=137 Identities=21% Similarity=0.157 Sum_probs=97.4
Q ss_pred cCCccccccccccccccc----CchhhhHHHHHHHhccc----CC-ceEEEecCcceeeecccccCCCCCCCchhhhhhh
Q psy2778 241 VPGVLFIDEVHMLDLETF----MPHLETFTYLHRALESA----IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 311 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~----~~~~~~~~~L~~~~e~~----~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 311 (409)
.++++||||++.+....- ....+.++.|...++.. .. .+||.+||. +..+++.+++||
T Consensus 176 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~-------------~~~l~~~l~~Rf 242 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR-------------PQEIDEAARRRL 242 (357)
T ss_dssp CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC-------------GGGBCHHHHTTC
T ss_pred CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC-------------hhhCCHHHHhhC
Confidence 357999999998743200 00122456666766642 23 345556653 345678899999
Q ss_pred h-eeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH------------hCCCCc
Q psy2778 312 L-IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT------------NGRTAI 378 (409)
Q Consensus 312 ~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~------------~~~~~I 378 (409)
. .+.++.++.++..++++..+...++.++++.++.|++.+.+-+++..-.++..|...+.. .....|
T Consensus 243 ~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i 322 (357)
T 3d8b_A 243 VKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPI 322 (357)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCB
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCc
Confidence 5 789999999999999999999889999999999999999444777777777777655432 123579
Q ss_pred cHHHHHHHHHhc
Q psy2778 379 SKQDILEVSTLF 390 (409)
Q Consensus 379 ~~~~v~~~~~~~ 390 (409)
+.+|+..++.-+
T Consensus 323 ~~~d~~~al~~~ 334 (357)
T 3d8b_A 323 AYIDFENAFRTV 334 (357)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999998887543
No 109
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.07 E-value=6.6e-06 Score=80.31 Aligned_cols=65 Identities=20% Similarity=0.066 Sum_probs=45.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh-hhhhhhhHHHHHHHHHHHhhhhcccceEEeccccc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF-SSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTE 83 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~-~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~ 83 (409)
+..++..++|+||||+||||++++++..++. .++.+..++-. ..+++ ...+..++++||++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g--~~~~~~~~~~~~~~~lg---------------~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGG--KALNVNLPLDRLNFELG---------------VAIDQFLVVFEDVKG 227 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCC--EEECCSSCTTTHHHHHG---------------GGTTCSCEEETTCCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCC--cEEEEeccchhHHHHHH---------------HhcchhHHHHHHHHH
Confidence 4556779999999999999999999999875 44444433211 11111 123567889999999
Q ss_pred ccc
Q psy2778 84 LTP 86 (409)
Q Consensus 84 i~~ 86 (409)
+..
T Consensus 228 ~~~ 230 (377)
T 1svm_A 228 TGG 230 (377)
T ss_dssp STT
T ss_pred HHH
Confidence 865
No 110
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.06 E-value=2.5e-05 Score=71.83 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=94.0
Q ss_pred CCccccccccccccccc---C---ch-hhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh--
Q psy2778 242 PGVLFIDEVHMLDLETF---M---PH-LETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 309 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~---~---~~-~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 309 (409)
++++|+||++.+..+.- . .. .+.++.+.+.++.. ...++|.+||. +..+++.+++
T Consensus 105 ~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~-------------~~~l~~~l~r~~ 171 (257)
T 1lv7_A 105 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR-------------PDVLDPALLRPG 171 (257)
T ss_dssp SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC-------------TTTSCGGGGSTT
T ss_pred CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC-------------chhCCHHHcCCC
Confidence 46999999987765310 0 00 13455566666642 23456666653 3455666665
Q ss_pred hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCc-cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~I~~~s~~g-~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..+.+++++.++..++++..++.. ++++++ +..++..+ .| ++|...++++.|...|..++...|+.+|+..+
T Consensus 172 rf~~~i~i~~P~~~~r~~il~~~~~~~--~l~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a 248 (257)
T 1lv7_A 172 RFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGT-PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKA 248 (257)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 65 468888999999999998877654 444443 67888888 77 99999999999999998878889999999988
Q ss_pred HHh
Q psy2778 387 STL 389 (409)
Q Consensus 387 ~~~ 389 (409)
+..
T Consensus 249 ~~~ 251 (257)
T 1lv7_A 249 KDK 251 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 111
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=6.4e-05 Score=73.60 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=100.1
Q ss_pred ccCCcccccccccccccccC-------chhhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLETFM-------PHLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~~-------~~~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..|.++||||++.+-..... .....++.|+..|+.. ...+||.+||+ |..+.++++.
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr-------------pd~LDpAllR 306 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR-------------LDILDPALLR 306 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC-------------SSSSCHHHHS
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC-------------hhhCCHhHcC
Confidence 35789999999977432100 0122456666766632 23467777775 5778888886
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..|.++.++.++-.+|++..+++.++. ++.-++.|++.+.+-+++.--+++..|...|..+++..|+.+|+..+
T Consensus 307 pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~A 385 (405)
T 4b4t_J 307 PGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 385 (405)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred CCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 88 579999999999999999888765442 12238899999866688888899999998888888889999999888
Q ss_pred HH
Q psy2778 387 ST 388 (409)
Q Consensus 387 ~~ 388 (409)
+.
T Consensus 386 l~ 387 (405)
T 4b4t_J 386 VG 387 (405)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.94 E-value=7e-06 Score=70.96 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~ 45 (409)
+.-|+|+||||+||||++++||+.++. +++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~--~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE--PWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS--CEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC--CeEEeccc
Confidence 467999999999999999999999985 77766553
No 113
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.91 E-value=2.8e-05 Score=77.75 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=88.3
Q ss_pred cCCcccccccccccccccC---c-hhhhHHHHHHHhccc----CCceEEEecCcceeeecccccCCCCCCCchhhhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETFM---P-HLETFTYLHRALESA----IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 311 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~---~-~~~~~~~L~~~~e~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~- 311 (409)
.++++||||++.+.....- . ..+..+.|+..++.. ...+||.+||. ++.+++.+++||
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~-------------~~~ld~al~rRf~ 293 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI-------------PWVLDSAIRRRFE 293 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC-------------GGGSCHHHHTTCC
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC-------------ccccCHHHHhhcc
Confidence 4689999999988432000 0 122456666777652 33556667764 456788999999
Q ss_pred heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Q psy2778 312 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~ 371 (409)
.++.+++++.++..++++..+...+..+++..++.|++.+.+.+++..-+++..|...|.
T Consensus 294 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 294 KRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353 (444)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999998888888899999999999944488888888888876553
No 114
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.91 E-value=1.3e-05 Score=72.11 Aligned_cols=52 Identities=15% Similarity=0.388 Sum_probs=38.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFR 63 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~ 63 (409)
.++-|+|.||||+||+|.|+.||+.++ +..++..+++...+.....+.+.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g----~~hIstGdllR~~i~~~t~lg~~~~ 79 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH----FNHLSSGDLLRAEVQSGSPKGKELK 79 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC----CEEECHHHHHHHHHTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC----CceEcHHHHHHHHHHcCCchHHHHH
Confidence 356788899999999999999999986 5677888887766654333333333
No 115
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.89 E-value=8.3e-06 Score=71.02 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
++.|+|+|||||||||+++.||+.+++ +++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~--~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR--ILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC--CEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC--CEEECh
Confidence 468999999999999999999999986 777553
No 116
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.84 E-value=1e-05 Score=71.91 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
...|++||||||||+.|.+++...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999998876553
No 117
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.0001 Score=72.58 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=97.7
Q ss_pred ccCCcccccccccccccccC-------chhhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLETFM-------PHLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~~-------~~~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..|.++||||++.+-..-.- .....+..|+..|+.. ...+||.+||+ |..+.++++.
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr-------------pd~LDpALlR 340 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK-------------IETLDPALIR 340 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC-------------STTCCTTSSC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC-------------hhhcCHHHhc
Confidence 45789999999976432000 0123455666665532 33567778875 4566677775
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 385 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~-~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~ 385 (409)
|+ ..|.++.++.++-.+|++..+++.. ++++ -++.|++.+.+-+.+.--+++..|...|..+++..|+.+|+..
T Consensus 341 pGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~ 418 (437)
T 4b4t_I 341 PGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQ 418 (437)
T ss_dssp TTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHH
T ss_pred CCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 77 4688999999999999998887654 3333 3889999986668888889999999988888888999999988
Q ss_pred HHH
Q psy2778 386 VST 388 (409)
Q Consensus 386 ~~~ 388 (409)
+..
T Consensus 419 Al~ 421 (437)
T 4b4t_I 419 AKE 421 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=1.4e-05 Score=70.69 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
++..|+|.|||||||||++++||+.+++ +++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~--~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV--PFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC--CEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC--CEEcch
Confidence 4568999999999999999999999986 776544
No 119
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.80 E-value=4.6e-06 Score=77.28 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=90.8
Q ss_pred cCCcccccccccccccc--------cCchhhhHHHHHHHhcccC---C-ceEEEecCcceeeecccccCCCCCCCchhhh
Q psy2778 241 VPGVLFIDEVHMLDLET--------FMPHLETFTYLHRALESAI---A-PIVIFATNRGRCLVRGTDDIISPHGIPLDLL 308 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~--------~~~~~~~~~~L~~~~e~~~---~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (409)
.++++||||++.+.... .....+.++.|.+.++... . .++|.+||. +..+++.++
T Consensus 103 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~-------------~~~ld~~l~ 169 (268)
T 2r62_A 103 APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR-------------PEILDPALM 169 (268)
T ss_dssp CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSC-------------CTTSCGGGG
T ss_pred CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCC-------------chhcCHhHc
Confidence 35899999999886530 0000123455666666432 2 344555542 345667787
Q ss_pred h--hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q psy2778 309 D--RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 385 (409)
Q Consensus 309 ~--r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~ 385 (409)
+ |+ ..+.+++++.++..++++..++..++. ++..++.|++.+.+-++|...++++.|...|...+...|+.+++..
T Consensus 170 r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~ 248 (268)
T 2r62_A 170 RPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKE 248 (268)
T ss_dssp SSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHT
T ss_pred CCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 7 65 568899999999999999877654432 2334677888874447888889999998888766677899999987
Q ss_pred HHH
Q psy2778 386 VST 388 (409)
Q Consensus 386 ~~~ 388 (409)
++.
T Consensus 249 a~~ 251 (268)
T 2r62_A 249 AVE 251 (268)
T ss_dssp SCT
T ss_pred HHH
Confidence 664
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.80 E-value=2.8e-05 Score=69.31 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=29.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~ 45 (409)
|..++.-++++||||+|||+++..+|...+. +.+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGK--KVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCS--EEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCC--cEEEEECC
Confidence 4556677899999999999999999984454 55555543
No 121
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00011 Score=72.77 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=98.7
Q ss_pred ccCCcccccccccccccccC-------chhhhHHHHHHHhcccCC---ceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLETFM-------PHLETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~~-------~~~~~~~~L~~~~e~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..|.++||||++.+-..-.- .....+..|+..|+...+ .+||.+||+ |..++++++.
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr-------------p~~LD~AllR 339 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR-------------VDVLDPALLR 339 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS-------------CCCCCTTTCS
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-------------chhcCHhHhc
Confidence 35789999999976332000 012235667777765432 467777875 5667777866
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 385 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~-~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~ 385 (409)
|+ ..|.++.++.++-.+|++..+++..+ +++ -++.|++.+.+-+++.--+++..|...|..+++..|+.+|+..
T Consensus 340 pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~ 417 (434)
T 4b4t_M 340 SGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVE 417 (434)
T ss_dssp TTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred CCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 77 46899999999999999988876543 332 3788999985668888888999998888888888999999988
Q ss_pred HHHh
Q psy2778 386 VSTL 389 (409)
Q Consensus 386 ~~~~ 389 (409)
++.-
T Consensus 418 Al~~ 421 (434)
T 4b4t_M 418 GISE 421 (434)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 8753
No 122
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00018 Score=71.28 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=97.9
Q ss_pred ccCCcccccccccccccc----cCc---hhhhHHHHHHHhcccC---CceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLET----FMP---HLETFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~----~~~---~~~~~~~L~~~~e~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..|.++||||++.+-..- .-. ....++.|+..|+... ..+||.+||+ |..+.++++.
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr-------------p~~LDpAllR 339 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR-------------PDTLDPALLR 339 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS-------------TTSSCTTTTS
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC-------------chhhCHHHhC
Confidence 357899999999764320 000 1234566777776432 3578888876 4566677765
Q ss_pred h--h-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 R--L-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 r--~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
+ + ..|.++.++.++-.+|++..+.+.... ++.-++.|++.+.+-+++.--+++..|...|..+++..|+.+|+..+
T Consensus 340 pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~A 418 (437)
T 4b4t_L 340 PGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKA 418 (437)
T ss_dssp TTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 4 5 468899999999999999888765432 22237899999966688888889999988888888889999999888
Q ss_pred HH
Q psy2778 387 ST 388 (409)
Q Consensus 387 ~~ 388 (409)
+.
T Consensus 419 l~ 420 (437)
T 4b4t_L 419 VR 420 (437)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 123
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.76 E-value=0.00014 Score=73.10 Aligned_cols=134 Identities=23% Similarity=0.264 Sum_probs=93.4
Q ss_pred cCCcccccccccccccc------cCch-hhhHHHHHHHhcc---cCCceEEEecCcceeeecccccCCCCCCCchhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLET------FMPH-LETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 309 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~------~~~~-~~~~~~L~~~~e~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 309 (409)
.|.++||||++.+.... ..+. .+.++.|+..|+. ....+||.+||+. ..+.+.++.
T Consensus 108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~-------------~~Ld~allR~ 174 (476)
T 2ce7_A 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP-------------DILDPALLRP 174 (476)
T ss_dssp CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG-------------GGSCGGGGST
T ss_pred CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh-------------hhhchhhccc
Confidence 35799999999885530 0011 2346667777753 2345677777653 334445554
Q ss_pred -hhh-eeecCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 -RLL-IIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 -r~~-~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+. .+.+.+++.++..+|++..++... +.+++ +..|++.+.+-+.|...+++..|...|..++...|+.+++..+
T Consensus 175 gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~a 252 (476)
T 2ce7_A 175 GRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEA 252 (476)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 664 788999999999999998776643 44333 7889998833356888999999998887777788999999888
Q ss_pred HHh
Q psy2778 387 STL 389 (409)
Q Consensus 387 ~~~ 389 (409)
+.-
T Consensus 253 l~~ 255 (476)
T 2ce7_A 253 IDR 255 (476)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 124
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00023 Score=70.74 Aligned_cols=135 Identities=20% Similarity=0.204 Sum_probs=97.2
Q ss_pred ccCCcccccccccccccccC-------chhhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLETFM-------PHLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~~-------~~~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..|.++||||++.+-..-.- .....+..|+..|+.. ...+||.+||+ |..+.++++.
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNr-------------pd~LDpALlR 367 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNR-------------PNTLDPALLR 367 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSC-------------TTSBCHHHHS
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCC-------------cccCChhhhc
Confidence 35779999999977432000 0122355566666543 22456777765 5677888876
Q ss_pred --hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 --r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..|.++.++.++..+|++..+++..+.- +--++.|++.+.+-+.+.--+++..|...|..+++..|+.+|+..+
T Consensus 368 pGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~A 446 (467)
T 4b4t_H 368 PGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKA 446 (467)
T ss_dssp TTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred cccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 88 5789999999999999998887654321 2237889999866688888889999998888888889999999887
Q ss_pred HH
Q psy2778 387 ST 388 (409)
Q Consensus 387 ~~ 388 (409)
+.
T Consensus 447 l~ 448 (467)
T 4b4t_H 447 VD 448 (467)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.72 E-value=2.3e-05 Score=68.45 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
.+.-|+|.||||+||||+++.|++.+++ +++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~--~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL--PLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC--CEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC--eEec
Confidence 4567999999999999999999999985 6665
No 126
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.70 E-value=2.5e-05 Score=67.71 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.++.|+|+||||+||||+++.||+.++. +++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~--~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL--KYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC--eEEEH
Confidence 3467999999999999999999999985 56543
No 127
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.66 E-value=0.0003 Score=84.23 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=28.2
Q ss_pred CCCchhhhhhhheeecCCCCHHHHHHHHHHHH
Q psy2778 301 HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRA 332 (409)
Q Consensus 301 ~~~~~~l~~r~~~i~~~~~~~~e~~~il~~~~ 332 (409)
+.+|+-+++|+.++.+..++.+++..|.....
T Consensus 1438 ~~l~~Rf~r~F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1438 VQLTHRFLRHAPILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCCCHHHHTTCCEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHhhceEEEeCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999976443
No 128
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.66 E-value=3e-05 Score=66.40 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
++|+|.|+|||||||+++.||+.+|+ +++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~--~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL--EVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC--CEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--CEEEC
Confidence 68999999999999999999999996 77764
No 129
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.65 E-value=3.4e-05 Score=65.97 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
-|+|.||||+||||+++.||+.+++ +++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~--~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY--PIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC--CEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eeecCc
Confidence 6889999999999999999999985 666544
No 130
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.64 E-value=2.9e-05 Score=67.03 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.|+|.||||+||||+++.||+.+++ +++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~--~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL--VFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC--EEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC--CEEcc
Confidence 6899999999999999999999985 66653
No 131
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.64 E-value=3.2e-05 Score=67.22 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
..|+|+||||+||||+|+.||+.+|+ +++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~--~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV--GLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC--CEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC--CEEeCc
Confidence 46999999999999999999999986 776543
No 132
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.63 E-value=3.2e-05 Score=67.49 Aligned_cols=32 Identities=41% Similarity=0.609 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-cCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE-LGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~-l~~~~~~v~i 42 (409)
+..|+|+|||||||||+++.||+. +|+ +++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~--~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGF--QHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTE--EEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC--EEeeH
Confidence 467999999999999999999999 664 66543
No 133
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.62 E-value=0.00012 Score=67.57 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---cCCCccEEEecCchh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE---LGNKVPFCPMVGSEV 47 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~---l~~~~~~v~i~~~~l 47 (409)
+.-|+|.|+||+||||+|+.|++. .|+ +++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~--~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNI--DVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCC--EEEEECchHH
Confidence 357899999999999999999998 564 6765555443
No 134
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.62 E-value=3.2e-05 Score=69.39 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=28.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
...+..|+|.||||+||||+++.||+.++. +++..
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~--~~i~~ 36 (217)
T 3be4_A 2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGL--AHLST 36 (217)
T ss_dssp GGGCCEEEEEECTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhCc--eEEeh
Confidence 334568999999999999999999999985 65544
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.61 E-value=4.8e-05 Score=67.17 Aligned_cols=33 Identities=33% Similarity=0.640 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.|..|+|+||||+||||+|+.||+.++. +++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~--~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGI--PQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTC--CEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--cEEeh
Confidence 3467999999999999999999999985 66544
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=4.3e-05 Score=65.52 Aligned_cols=31 Identities=32% Similarity=0.640 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
+..+.|+|||||||||+++.||..++. +++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~--~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM--EFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC--EEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC--CEEe
Confidence 357999999999999999999999984 4443
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.59 E-value=3.9e-05 Score=66.95 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
.|.-|+|.||||+||||+++.|++.++. +++.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~--~~i~ 33 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY--THLS 33 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC--EEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC--eEEe
Confidence 3567999999999999999999999985 5543
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.58 E-value=3.8e-05 Score=67.05 Aligned_cols=39 Identities=31% Similarity=0.614 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
.++.-+.|.||||+||||+++.||..++. ..+.+++.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~--g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCC--CeEEEcccch
Confidence 44567899999999999999999987654 6677776554
No 139
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.58 E-value=7.1e-05 Score=68.47 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSS 50 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~ 50 (409)
+|..|+|+||||+||||+|+.|++.++. + .++.+++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~--~--~is~~~~~r~ 66 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY--C--HLSTGDLLRE 66 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC--E--EEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC--e--EEecHHHHHH
Confidence 4578999999999999999999999873 3 4444444443
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.57 E-value=3.6e-05 Score=67.02 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|+|.||||+||||+++.||+.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999886
No 141
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.57 E-value=0.00019 Score=69.38 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=48.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhh----hhhhh---------HHHHHHHHHHHhh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSS----EIKKT---------EVLMENFRRAIGL 68 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~----~~~~~---------e~l~~~f~~a~~~ 68 (409)
|..++.-++++||||+|||+++..+|... +. ..+.++...-... ..|.. ..+.+.+..+...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~--~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--IAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC--eEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 45566779999999999999999998765 33 4444444322111 11100 0112222222211
Q ss_pred -hhcccceEEecccccccc
Q psy2778 69 -RIKESKEVYEGEVTELTP 86 (409)
Q Consensus 69 -~~~~~~ii~iDEid~i~~ 86 (409)
+...|.+|++|++..+.+
T Consensus 135 ~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HTTTCCSEEEEECGGGCCC
T ss_pred HhcCCCCEEEEcChHhhcc
Confidence 234699999999999975
No 142
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.55 E-value=0.00024 Score=71.80 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=92.1
Q ss_pred cCCcccccccccccccccC----chhhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh--hh
Q psy2778 241 VPGVLFIDEVHMLDLETFM----PHLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL 311 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~----~~~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--r~ 311 (409)
.++++|+||++.+....-- -..+.++.|++.|+.. ...+||.+||+. ..+++.+++ |+
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~-------------~~Ld~al~r~gRf 363 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP-------------NSIDPALRRFGRF 363 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG-------------GGBCGGGGSTTSS
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc-------------cccCHHHhCCCcC
Confidence 3579999999877652000 0023577888888753 334566677642 345677877 55
Q ss_pred -heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCC--------------
Q psy2778 312 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT-------------- 376 (409)
Q Consensus 312 -~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~-------------- 376 (409)
..+.+.+++.++..++++..++...+.. +..+..+++.+.+.+.+..-+++..|...|..+...
T Consensus 364 ~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~ 442 (489)
T 3hu3_A 364 DREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (489)
T ss_dssp CEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHH
T ss_pred ceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhc
Confidence 3689999999999999998887665543 334788888885557888888888888877654322
Q ss_pred ---CccHHHHHHHHH
Q psy2778 377 ---AISKQDILEVST 388 (409)
Q Consensus 377 ---~I~~~~v~~~~~ 388 (409)
.|+.+|+..++.
T Consensus 443 ~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 443 NSLAVTMDDFRWALS 457 (489)
T ss_dssp HHCCBCHHHHHHHHT
T ss_pred ccCcCCHHHHHHHHH
Confidence 377778877765
No 143
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0013 Score=65.00 Aligned_cols=134 Identities=23% Similarity=0.241 Sum_probs=97.7
Q ss_pred ccCCcccccccccccccccC-------chhhhHHHHHHHhccc---CCceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLETFM-------PHLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~~-------~~~~~~~~L~~~~e~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..|.++||||++.+-..-.- ...+.++.|+..|... ...+||.+||+ |..++++++.
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~-------------~~~LD~AllR 330 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR-------------ADTLDPALLR 330 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC-------------SSSCCHHHHS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC-------------hhhcChhhhc
Confidence 35789999999866432000 0123466777777643 23467777765 5778888886
Q ss_pred --hhh-eeecC-CCCHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q psy2778 310 --RLL-IIRTT-PYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 384 (409)
Q Consensus 310 --r~~-~i~~~-~~~~~e~~~il~~~~~~~~~~i~~~-~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~ 384 (409)
|+- .|.++ +++.++..+|++..+++..+ +++ -++.|++.+.+-+++.--+++..|...|..+++..|+.+|+.
T Consensus 331 pGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~ 408 (428)
T 4b4t_K 331 PGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 408 (428)
T ss_dssp SSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 774 68885 67889999999988876543 333 388999998666888888999999988888888899999999
Q ss_pred HHHH
Q psy2778 385 EVST 388 (409)
Q Consensus 385 ~~~~ 388 (409)
+++.
T Consensus 409 ~A~~ 412 (428)
T 4b4t_K 409 EAYA 412 (428)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 144
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.54 E-value=0.00023 Score=65.16 Aligned_cols=133 Identities=25% Similarity=0.306 Sum_probs=89.3
Q ss_pred cCCcccccccccccccccC----c---hhhhHHHHHHHhccc--CCceEEEecCcceeeecccccCCCCCCCchhhhh--
Q psy2778 241 VPGVLFIDEVHMLDLETFM----P---HLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 309 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~----~---~~~~~~~L~~~~e~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 309 (409)
.+.++++||++.+....-. . ..+.++.+...+... ..++++.++. +.|..+++.+++
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t------------~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT------------NRPDILDPALLRPG 175 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE------------SCGGGSCGGGGSTT
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEcc------------CCchhCCHHHcCCC
Confidence 4579999999876432000 0 012344555555432 2234444431 224556777887
Q ss_pred hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q psy2778 310 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 387 (409)
Q Consensus 310 r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~ 387 (409)
|+ ..+.+++++.++..+|++..++. .++++++ +.+|++.+.+.++|...++++.|...|..++...|+.+|+++++
T Consensus 176 rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred cCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 44 46889999999999999877643 5565554 88999998444678999999999988887777789999998864
No 145
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.53 E-value=5.6e-05 Score=67.79 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+..|+|.||||+||||+++.||+.++. +++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~--~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHA--AHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc--eEEeh
Confidence 468999999999999999999999985 55543
No 146
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.53 E-value=5.4e-05 Score=66.22 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+.-|+|.|||||||||+++.||+.+++ +++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~--~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGY--THLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC--eEEcH
Confidence 467999999999999999999999985 55543
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.52 E-value=4.1e-05 Score=66.49 Aligned_cols=31 Identities=39% Similarity=0.689 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
+..|+|.|||||||||+++.||+.++. +++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~--~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF--KKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC--EEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC--eEec
Confidence 356899999999999999999999984 4443
No 148
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.51 E-value=6.7e-05 Score=69.12 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~ 45 (409)
-+++.|||||||||+|+.||+.++. +++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~--~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW--PVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC--CEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC--eEEeccHH
Confidence 5789999999999999999999986 77766653
No 149
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.50 E-value=0.00033 Score=62.65 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=24.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++..++++||||+|||++++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44566778999999999999999999654
No 150
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.00025 Score=68.59 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=49.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhh----hhhh------------hhHHHHHHHHHH
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFS----SEIK------------KTEVLMENFRRA 65 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~----~~~~------------~~e~l~~~f~~a 65 (409)
|..++.-++++||||+|||++|..+|..+ +. +.+.++...-.. ...+ ..+.+.+.++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~--~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 45567789999999999999999999765 33 555555532111 1111 012233333333
Q ss_pred HhhhhcccceEEecccccccc
Q psy2778 66 IGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 66 ~~~~~~~~~ii~iDEid~i~~ 86 (409)
. +...+.+|+||.+..+.+
T Consensus 137 ~--~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 137 A--RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp H--HHTCCSEEEEECGGGCCC
T ss_pred H--hccCCCEEEEcCHHHhcc
Confidence 2 235789999999999875
No 151
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.50 E-value=5.5e-05 Score=65.43 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFC 40 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v 40 (409)
+.-|+|+|+||+||||+++.||+.++. +++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~--~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG--SFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT--CEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC--CEE
Confidence 467999999999999999999999986 665
No 152
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.49 E-value=9e-05 Score=63.73 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.++..+.|.||||+||||+++.|+..+|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 45567999999999999999999999874
No 153
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.48 E-value=6.8e-05 Score=64.20 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
..|+|+||||+||||+++.||+.++. +++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~--~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY--EFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC--EEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--cEEcc
Confidence 46899999999999999999999985 66643
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.48 E-value=6.8e-05 Score=63.93 Aligned_cols=30 Identities=37% Similarity=0.636 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.-|+|.||||+||||+++.| +.+|. +++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~--~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA--KVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC--EEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC--cEEEH
Confidence 36889999999999999999 88885 66554
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.47 E-value=0.00047 Score=64.07 Aligned_cols=132 Identities=25% Similarity=0.318 Sum_probs=88.1
Q ss_pred cCCcccccccccccccccC----ch---hhhHHHHHHHhccc--CCceEEEecCcceeeecccccCCCCCCCchhhhh--
Q psy2778 241 VPGVLFIDEVHMLDLETFM----PH---LETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 309 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~~----~~---~~~~~~L~~~~e~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 309 (409)
.+.++++||++.+....-. .. .+.++.+...+... ...+++.++. +.|..+.+.+++
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t------------~~p~~ld~~l~r~~ 199 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT------------NRPDILDPALLRPG 199 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEE------------SCTTSSCHHHHSTT
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEec------------CCchhCCHhHcCCC
Confidence 4579999999866421000 00 12233444444432 2234444431 235667888887
Q ss_pred hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCc-cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q psy2778 310 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILEV 386 (409)
Q Consensus 310 r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~I~~~s~~g-~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~ 386 (409)
|+ ..+.+++++.++..++++..++. .++++++ +.+|+..+ .| +.|..-++++.|...|..++...|+.+|+.++
T Consensus 200 rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a 276 (278)
T 1iy2_A 200 RFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276 (278)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 44 46899999999999999977654 5565554 88899998 55 45778889999998887777788999999887
Q ss_pred H
Q psy2778 387 S 387 (409)
Q Consensus 387 ~ 387 (409)
+
T Consensus 277 ~ 277 (278)
T 1iy2_A 277 A 277 (278)
T ss_dssp T
T ss_pred h
Confidence 4
No 156
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.47 E-value=8.6e-05 Score=69.73 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
.|.-++|.||||+||||+++.|++.++. .++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~--~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechHh
Confidence 3567999999999999999999999853 4566666443
No 157
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.47 E-value=8.8e-05 Score=65.50 Aligned_cols=31 Identities=29% Similarity=0.590 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
+.-|+|.||||+||||+++.|++.++. +++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~--~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY--PFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC--CEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC--EEEe
Confidence 357999999999999999999999985 5554
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.46 E-value=8.4e-05 Score=64.27 Aligned_cols=37 Identities=32% Similarity=0.636 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGS 45 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~ 45 (409)
.++.-+.|+|++|+||||+++.|+..+ |. +++.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~--~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI--PCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCC--cEEEECCh
Confidence 456778999999999999999999988 64 77777653
No 159
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.45 E-value=0.00036 Score=65.78 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=90.3
Q ss_pred cCCccccccccccccccc-------CchhhhHHHHHHHhcc---cCCceEEEecCcceeeecccccCCCCCCCchhhhh-
Q psy2778 241 VPGVLFIDEVHMLDLETF-------MPHLETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 309 (409)
Q Consensus 241 ~~gvl~ide~~~l~~~~~-------~~~~~~~~~L~~~~e~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 309 (409)
.++++|+||++.+....- -...+.++.|.+.++. ....+||.+||+ +..+.+.+++
T Consensus 108 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~-------------~~~ld~al~r~ 174 (301)
T 3cf0_A 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR-------------PDIIDPAILRP 174 (301)
T ss_dssp CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC-------------GGGSCGGGGST
T ss_pred CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC-------------ccccChHHhcC
Confidence 368999999998754200 0001235667777763 233567777764 2345566776
Q ss_pred -hh-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhC-------------
Q psy2778 310 -RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNG------------- 374 (409)
Q Consensus 310 -r~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~------------- 374 (409)
|+ ..+.+++++.++..++++..+++.++. .+..++.++..+.+-+.+.--++++.|...|..+.
T Consensus 175 gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 253 (301)
T 3cf0_A 175 GRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT 253 (301)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 77 578999999999999999888776553 23346778888745567777778877776653210
Q ss_pred ------------CCCccHHHHHHHHHhc
Q psy2778 375 ------------RTAISKQDILEVSTLF 390 (409)
Q Consensus 375 ------------~~~I~~~~v~~~~~~~ 390 (409)
...|+.+|+..++.-.
T Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 254 NPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp ------------CCCBCHHHHHHHHTTC
T ss_pred ccccccccccccCCccCHHHHHHHHHHc
Confidence 1358889998888644
No 160
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.45 E-value=7.3e-05 Score=67.42 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+..|+|.||||+||||+++.||+.++. +++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~--~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL--KHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS--EEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC--eEEec
Confidence 467999999999999999999999985 55543
No 161
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.45 E-value=7.6e-05 Score=65.42 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
+.-|+|.||||+||||+++.||+.++. +++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~--~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF--THLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC--EEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC--eEEc
Confidence 467999999999999999999999984 5444
No 162
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.44 E-value=0.00028 Score=68.49 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=49.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhhh----hh------------hhHHHHHHHHHH
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSSE----IK------------KTEVLMENFRRA 65 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~~----~~------------~~e~l~~~f~~a 65 (409)
|..++.-++++||||+|||++|..+|..+ +. +.+.++...-.... .+ ..+.+...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~--~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG--TCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC--eEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 45567789999999999999999998765 33 45555543222111 11 112222333332
Q ss_pred HhhhhcccceEEecccccccc
Q psy2778 66 IGLRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 66 ~~~~~~~~~ii~iDEid~i~~ 86 (409)
. +...+.+|+||.+..+.+
T Consensus 148 ~--~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 148 V--RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp H--TTTCCSEEEEECTTTCCC
T ss_pred H--hcCCCCEEEEeChHHhcc
Confidence 2 235689999999999975
No 163
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.44 E-value=8.9e-05 Score=64.47 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+.-|+|.|||||||||+++.|++.+++ +++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~--~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW--VHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC--eEeeH
Confidence 357999999999999999999999984 55543
No 164
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.43 E-value=0.00034 Score=63.19 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=31.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-------CccEEEecCch
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN-------KVPFCPMVGSE 46 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-------~~~~v~i~~~~ 46 (409)
|..++.-++|+||||+|||++++.+|...-. .-..+.+++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4556678899999999999999999985211 23566666544
No 165
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.43 E-value=7.4e-05 Score=68.74 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
.|..++|.||||+||||+++.|++.++. .++.+++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~--~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQG--NIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTT--CCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC--CcEEEecHHH
Confidence 3578999999999999999999999874 4555666544
No 166
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.43 E-value=5.7e-05 Score=65.03 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-HcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH-ELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~-~l~ 34 (409)
|.-|+|.||||+||||+|+.|++ .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 35789999999999999999999 454
No 167
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.43 E-value=8.9e-05 Score=67.19 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+..|+|.|||||||||+++.||+.++. +++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~--~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV--CHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC--EEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC--ceecH
Confidence 357999999999999999999999984 55543
No 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.43 E-value=8.9e-05 Score=66.15 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.|+|+||||+||||+|+.||+.++. +++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~--~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI--PHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC--CEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEEeH
Confidence 5889999999999999999999874 54433
No 169
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.41 E-value=0.00069 Score=81.16 Aligned_cols=64 Identities=23% Similarity=0.181 Sum_probs=48.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhhhhhHHHHHHHHHHHhhhhcccceEEecccccc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTEL 84 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~~~~e~l~~~f~~a~~~~~~~~~ii~iDEid~i 84 (409)
.|..+.||+|||||.+++.+|+.+|. +++.+++++-.... .+.++|..+. ....-..+||++++
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr--~~~vfnC~~~~d~~-----~~g~i~~G~~----~~GaW~cfDEfNrl 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGR--FVLVFCCDEGFDLQ-----AMSRIFVGLC----QCGAWGCFDEFNRL 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC--CEEEEECSSCCCHH-----HHHHHHHHHH----HHTCEEEEETTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCC--eEEEEeCCCCCCHH-----HHHHHHhhHh----hcCcEEEehhhhcC
Confidence 46789999999999999999999997 88888987643221 2335555543 34677889999887
No 170
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.41 E-value=0.00011 Score=62.72 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.|+|+|+||+||||+++.|++.++. +++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~--~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI--PFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC--CEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--CEEEC
Confidence 5899999999999999999999985 66653
No 171
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.40 E-value=0.0001 Score=65.67 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.|+|+||||+||||+|+.||+.++. +++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~--~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI--PHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC--CEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEeeH
Confidence 4889999999999999999999985 55443
No 172
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.39 E-value=9.3e-05 Score=64.36 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEV 47 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l 47 (409)
-|+|.||||+||||+++.|++.++. ..++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 5899999999999999999999862 123555544343
No 173
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.38 E-value=6.8e-05 Score=67.33 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+..|+|.||||+||||+++.||+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999984
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.38 E-value=0.00023 Score=68.82 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=49.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCchhhhhh----hh---------hhHHHHHHHHHHHh-
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSEVFSSE----IK---------KTEVLMENFRRAIG- 67 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~l~~~~----~~---------~~e~l~~~f~~a~~- 67 (409)
|..++.-++++||||+|||+|+..+|..+ +. ..+++++.+..... ++ ....+.+++..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg--~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG--VAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC--eEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 45556778999999999999999999875 33 45566654422210 10 00011222222221
Q ss_pred hhhcccceEEecccccccc
Q psy2778 68 LRIKESKEVYEGEVTELTP 86 (409)
Q Consensus 68 ~~~~~~~ii~iDEid~i~~ 86 (409)
.+...+.++++|.+..+.+
T Consensus 135 ~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHTSCCSEEEEECTTTCCC
T ss_pred hhhcCCCeEEehHhhhhcC
Confidence 1235789999999999876
No 175
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.38 E-value=0.00014 Score=64.28 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++.-+.|.||||+||||+++.|+..+|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3567899999999999999999999874
No 176
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.37 E-value=0.00012 Score=64.63 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+.-|+|.|||||||||+++.|++.++. +++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~--~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSF--VHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSC--EEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc--eEEeH
Confidence 346899999999999999999999974 55543
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.33 E-value=0.00051 Score=69.38 Aligned_cols=134 Identities=26% Similarity=0.327 Sum_probs=91.1
Q ss_pred ccCCccccccccccccccc--C--ch---hhhHHHHHHHhccc--CC-ceEEEecCcceeeecccccCCCCCCCchhhhh
Q psy2778 240 LVPGVLFIDEVHMLDLETF--M--PH---LETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 309 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~--~--~~---~~~~~~L~~~~e~~--~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (409)
..+.++||||++.+....- + .+ .+.++.|...|+.. .. .+++.+||+ |..+.+.+++
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~-------------p~~LD~aLlr 188 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR-------------PDILDPALLR 188 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSC-------------GGGSCTTTSS
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCC-------------hhhcCccccc
Confidence 3468999999987754210 0 01 12345555555532 22 345555554 2335556666
Q ss_pred h--h-heeecCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCc-cHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q psy2778 310 R--L-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDIL 384 (409)
Q Consensus 310 r--~-~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~-l~~I~~~s~~g-~~R~al~ll~~~~~~a~~~~~~~I~~~~v~ 384 (409)
+ + ..+.+.+++.++..+|++..++ ++++++++ +..|++.+ .| +.|..-+++..|...|..++...|+.+|+.
T Consensus 189 ~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t-~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 189 PGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTS-CSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred ccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 3 3 3688999999999999987664 45666554 88899998 55 458999999999888876677789999999
Q ss_pred HHHHh
Q psy2778 385 EVSTL 389 (409)
Q Consensus 385 ~~~~~ 389 (409)
.++.-
T Consensus 266 ~al~~ 270 (499)
T 2dhr_A 266 EAADR 270 (499)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88854
No 178
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.29 E-value=0.00014 Score=64.28 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++.-|+|.||||+||||+++.|++.++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3467899999999999999999999975
No 179
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.29 E-value=0.00016 Score=68.80 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
..++++||||||||+++..||+.++. +++.++...++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~--~iis~Ds~qvy 42 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC--ELISVDSALIY 42 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE--EEEEECTTTTB
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC--cEEeccchhhh
Confidence 57899999999999999999999985 78887765443
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.27 E-value=0.00024 Score=67.76 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-++++||||+|||+++..+|...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45566789999999999999999999875
No 181
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.27 E-value=0.00016 Score=64.46 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
.|+|.||||+||||+++.||+.++. +++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~--~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI--PQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC--CEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eEEeH
Confidence 5899999999999999999999985 66554
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.22 E-value=0.00023 Score=62.83 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||||+||||++++||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999998
No 183
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.22 E-value=4.5e-05 Score=73.34 Aligned_cols=37 Identities=19% Similarity=0.509 Sum_probs=29.3
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 3 ~~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+.|.. .+++|.||||+|||+++++||+.+++ +|+.++
T Consensus 20 ~~g~~--~~i~l~G~~G~GKTTl~~~la~~l~~--~f~~l~ 56 (359)
T 2ga8_A 20 EDNYR--VCVILVGSPGSGKSTIAEELCQIINE--KYHTFL 56 (359)
T ss_dssp TTCSC--EEEEEECCTTSSHHHHHHHHHHHHHH--HHHHHH
T ss_pred ccCCe--eEEEEECCCCCcHHHHHHHHHHHhCC--Ceeeec
Confidence 34444 37999999999999999999999985 665433
No 184
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.21 E-value=0.00061 Score=77.61 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=52.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhh----hhhhh---------hhHHHHHHHHHHHh-hh
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVF----SSEIK---------KTEVLMENFRRAIG-LR 69 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~----~~~~~---------~~e~l~~~f~~a~~-~~ 69 (409)
|..++..++|+||||+|||++|..+|..+.. .-+++.++..+.. ....+ ....+.+++..+.. .+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 5677889999999999999999999887621 1256666654332 22222 00122333333321 12
Q ss_pred hcccceEEecccccccc
Q psy2778 70 IKESKEVYEGEVTELTP 86 (409)
Q Consensus 70 ~~~~~ii~iDEid~i~~ 86 (409)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 46799999999999975
No 185
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.21 E-value=0.00021 Score=65.63 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+..+.|.||||+||||+++.||+.+++ +|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~--~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY--TFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC--EEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC--cEEeCc
Confidence 568999999999999999999999996 666543
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00024 Score=61.63 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
-++++-+.|.||+|+||||+++.|+..+.
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45567899999999999999999999764
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.17 E-value=0.00028 Score=63.18 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
..|.|.|||||||||+++.|++.+|+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999999884
No 188
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.16 E-value=0.00026 Score=63.66 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
.|+|.||||+||||+++.||+.++. +++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~--~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL--AHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eEEc
Confidence 4889999999999999999999974 4443
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.15 E-value=0.001 Score=76.72 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=56.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecCchhhhhh----hhh--------hH-HHHHHHHHHHhh-h
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVGSEVFSSE----IKK--------TE-VLMENFRRAIGL-R 69 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~~~l~~~~----~~~--------~e-~l~~~f~~a~~~-~ 69 (409)
|..++.-++++|+||+|||+||..+|..+.. .-++++++..+..... .|- .+ .+.+++..+... +
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 4667788999999999999999999988732 1368888876554443 220 11 233444444321 2
Q ss_pred hcccceEEecccccccc
Q psy2778 70 IKESKEVYEGEVTELTP 86 (409)
Q Consensus 70 ~~~~~ii~iDEid~i~~ 86 (409)
...|++||+|.+..+.+
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 35789999999999986
No 190
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.15 E-value=0.00033 Score=60.91 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~ 43 (409)
-|.|.|+||+||||+++.|++.+ |. +++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~--~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY--FVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEe
Confidence 47899999999999999999988 64 666654
No 191
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.14 E-value=0.00029 Score=61.77 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=24.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEE
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFC 40 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v 40 (409)
.|.|.|||||||||+++.||+.++. +++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~--~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY--EIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC--EEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC--cEE
Confidence 5789999999999999999999985 444
No 192
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.14 E-value=0.00068 Score=61.63 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc-hhhhhh
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS-EVFSSE 51 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~-~l~~~~ 51 (409)
+.++++||+|+|||.++.+++..++. +.+.+.+. ++...+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~--~~liv~P~~~L~~q~ 149 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELST--PTLIVVPTLALAEQW 149 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCS--CEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCC--CEEEEeCCHHHHHHH
Confidence 46999999999999999999998864 56666654 444333
No 193
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.14 E-value=0.00098 Score=64.09 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=24.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-++++||||+|||+++..+|...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556678899999999999999999873
No 194
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.14 E-value=0.00026 Score=62.19 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+.-|.|.||||+||||+++.|++.++ .++++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~-g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIP-ANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSC-GGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC-CCceEEEe
Confidence 46799999999999999999999983 13666554
No 195
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.14 E-value=0.00026 Score=62.60 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+++-++|.||||+||||+++.|++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 466789999999999999999999884
No 196
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.12 E-value=0.00025 Score=65.63 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
.++.-+++.||+|+||||+.++++..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345678899999999999999999876
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.12 E-value=0.00024 Score=62.91 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.+.-|.|.|+|||||||+++.|++.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999998764
No 198
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.11 E-value=0.00036 Score=63.37 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+..+.+.||||+||||+++.||+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999999999999999984
No 199
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.11 E-value=0.00069 Score=69.77 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.++++||||||||+++.+++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998866
No 200
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.11 E-value=0.00066 Score=64.18 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=47.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCC---CccEEEecCchhhh----hhhhh---------hHHHHHH-H---HHH
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELGN---KVPFCPMVGSEVFS----SEIKK---------TEVLMEN-F---RRA 65 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~~---~~~~v~i~~~~l~~----~~~~~---------~e~l~~~-f---~~a 65 (409)
..++ -++++||||+|||+|+-.++..... .-..+++++.+-+. ...|- .....++ + +..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4444 6899999999999998877765411 12566666643221 11110 0012222 2 222
Q ss_pred HhhhhcccceEEeccccccccc
Q psy2778 66 IGLRIKESKEVYEGEVTELTPV 87 (409)
Q Consensus 66 ~~~~~~~~~ii~iDEid~i~~~ 87 (409)
..++...|.+|++|=+.++.+.
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC
T ss_pred HHhhccCceEEEEecccccccc
Confidence 2234567999999999999753
No 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.09 E-value=0.0003 Score=64.21 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-+.|.||||+||||+++.||+.+|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999985
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.07 E-value=0.00027 Score=68.36 Aligned_cols=72 Identities=24% Similarity=0.382 Sum_probs=43.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCC--ccEEEecC-chhh---------hhhhhhhH-HHHHHHHHHHhhhhcccc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNK--VPFCPMVG-SEVF---------SSEIKKTE-VLMENFRRAIGLRIKESK 74 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~--~~~v~i~~-~~l~---------~~~~~~~e-~l~~~f~~a~~~~~~~~~ 74 (409)
++..+++.||+|+||||+.++++..+... -.++.+.. .++. ...++... .+.+.+..+. ...|.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL---~~~Pd 198 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL---REDPD 198 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT---TSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh---hhCcC
Confidence 34568899999999999999999877321 12222211 1110 11111111 3345566554 36899
Q ss_pred eEEecccc
Q psy2778 75 EVYEGEVT 82 (409)
Q Consensus 75 ii~iDEid 82 (409)
+|++||+-
T Consensus 199 villDEp~ 206 (356)
T 3jvv_A 199 IILVGEMR 206 (356)
T ss_dssp EEEESCCC
T ss_pred EEecCCCC
Confidence 99999984
No 203
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.06 E-value=0.0011 Score=63.91 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=25.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34556678899999999999999999987
No 204
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.05 E-value=0.0011 Score=62.09 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
.-|+|.||||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999999975
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.04 E-value=0.00036 Score=61.48 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
.|.++|||||||||+++.||+ +|. +++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~--~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA--YVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC--EEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC--EEEEcc
Confidence 588999999999999999999 874 665543
No 206
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.03 E-value=0.00047 Score=60.14 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHEL---GNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i 42 (409)
-|.|.|||||||||+++.|++.+ |. +++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~--~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK--KVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC---EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEe
Confidence 37899999999999999999998 75 55544
No 207
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.02 E-value=0.00029 Score=62.41 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|+|.||||+||||+++.|++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999875
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00043 Score=60.09 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++..++|.|+||+||||+++.||+.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999884
No 209
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.00 E-value=0.0006 Score=59.99 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
.|.+.||||+||||+++.||+.+|. +++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~--~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV--PYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC--CEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC--ceeccc
Confidence 6889999999999999999999985 666543
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.00 E-value=0.0004 Score=60.43 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.-+.|.||||+||||+++.|+...+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3578999999999999999998664
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.99 E-value=0.00035 Score=66.71 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
+-|+|.||+|+|||+++..||+.++. +++..+.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~--eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL--EVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE--EEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC--cEEcccccc
Confidence 46889999999999999999999985 777766643
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.96 E-value=0.00047 Score=60.87 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
..+.|.|||||||||+++.||+ +|. +++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~--~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV--PLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC--CEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC--cccc
Confidence 3578999999999999999998 774 6553
No 213
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.95 E-value=0.00046 Score=59.91 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=42.8
Q ss_pred CCccccccc---ccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhh--hheeec
Q psy2778 242 PGVLFIDEV---HMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRT 316 (409)
Q Consensus 242 ~gvl~ide~---~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r--~~~i~~ 316 (409)
|.++++||+ ..+|.. ...++.+.++.. ...+++++... -...+...+.+| +.++.+
T Consensus 100 p~llilDEigp~~~ld~~-------~~~~l~~~l~~~-~~~~i~~~H~~-----------h~~~~~~~i~~r~~~~i~~~ 160 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKK-------FRDLVRQIMHDP-NVNVVATIPIR-----------DVHPLVKEIRRLPGAVLIEL 160 (178)
T ss_dssp TCEEEECCCSTTGGGCHH-------HHHHHHHHHTCT-TSEEEEECCSS-----------CCSHHHHHHHTCTTCEEEEC
T ss_pred CCEEEEeCCCCcccCCHH-------HHHHHHHHHhcC-CCeEEEEEccC-----------CCchHHHHHHhcCCcEEEEe
Confidence 379999994 456666 788888888873 44355555310 012233446666 677888
Q ss_pred CCCCHHHHHHHH
Q psy2778 317 TPYNQKDMEAII 328 (409)
Q Consensus 317 ~~~~~~e~~~il 328 (409)
.+.+.+++.+-+
T Consensus 161 ~~~~r~~~~~~l 172 (178)
T 1ye8_A 161 TPENRDVILEDI 172 (178)
T ss_dssp CTTTTTTHHHHH
T ss_pred cCcCHHHHHHHH
Confidence 877766665544
No 214
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.95 E-value=0.0006 Score=64.30 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=30.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
+.-+++.||+|+|||++|..||+.++. +++..++-.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~--~iis~Ds~qvY 47 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV--ELISVDSALIY 47 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE--EEEECCTTTTB
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC--cEEeccccccc
Confidence 456889999999999999999999974 66666654443
No 215
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.94 E-value=0.00041 Score=66.44 Aligned_cols=73 Identities=12% Similarity=0.240 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhh-----h---hh-hhhHHHHHHHHHHHhhhhcccceEEe
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS-----S---EI-KKTEVLMENFRRAIGLRIKESKEVYE 78 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~-----~---~~-~~~e~l~~~f~~a~~~~~~~~~ii~i 78 (409)
++..+++.||+|+||||+.++|+..+...-..+.+.+..... . ++ +.....+..+..+. ...|.++++
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL---~~~p~ilil 246 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCL---RMRPDRIIL 246 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHT---TSCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHh---hhCCCEEEE
Confidence 356899999999999999999999875444556665542211 0 11 01123344555554 357999999
Q ss_pred ccccc
Q psy2778 79 GEVTE 83 (409)
Q Consensus 79 DEid~ 83 (409)
||.-+
T Consensus 247 dE~~~ 251 (330)
T 2pt7_A 247 GELRS 251 (330)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99764
No 216
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.88 E-value=0.00067 Score=60.43 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
|..|.|+||||||||++++.||+.+|. +++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~--~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM--IYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC--EEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC--ceecC
Confidence 457899999999999999999999985 65543
No 217
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.87 E-value=0.00063 Score=59.83 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
-|.|+|++||||||+++.|++.+|. +++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~--~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGA--HVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC--EEEEC
Confidence 4779999999999999999999884 66653
No 218
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.87 E-value=0.00084 Score=61.56 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+..|-|.||+||||||+++.||+.+|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 356889999999999999999999985
No 219
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00058 Score=59.84 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
+..|.|.|||||||||+++.||+. |. +++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~--~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GY--PVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TC--CEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CC--EEEccc
Confidence 457889999999999999999997 64 666533
No 220
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.86 E-value=0.00054 Score=60.84 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 355688999999999999999999874
No 221
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.85 E-value=0.00041 Score=61.11 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
+++++|.||||+|||++|..|++..+ +++.-+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~---~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH---RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC---EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC---eEEecch
Confidence 57899999999999999999998864 4554444
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.85 E-value=0.00067 Score=59.63 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||||+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999876
No 223
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.85 E-value=0.0009 Score=60.45 Aligned_cols=38 Identities=21% Similarity=0.538 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEI 52 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~~~~~ 52 (409)
.+=|.||||+||||+++.||+.++. + .++..+++...+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~--~--~is~gdllR~~~ 47 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGI--P--QISTGDMLRAAV 47 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC--C--EECHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCC--C--eeechHHHHHhc
Confidence 4668999999999999999999974 4 445556655443
No 224
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.84 E-value=0.001 Score=59.91 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-++++||||+||||++..++..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34567889999999999998888776
No 225
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.82 E-value=0.00068 Score=64.01 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~ 45 (409)
+.-+++.||+|+|||+++..||+.++. .++..++-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~--~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG--EVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE--EEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc--ceeecCcc
Confidence 346889999999999999999999874 55555543
No 226
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.79 E-value=0.00093 Score=61.15 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-|.+.||||+||||+|+.|++.++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 356889999999999999999999985
No 227
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.77 E-value=0.00085 Score=58.91 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||+|+||||+++.|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 228
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.77 E-value=0.0011 Score=60.03 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
.++..|.|.||||+||||+++.||+.+|. +++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~--~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF--TYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC--EEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC--ceec
Confidence 34567899999999999999999999984 5543
No 229
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.73 E-value=0.001 Score=58.17 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+-|+|+||+|+||||+++.|.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5689999999999999999998875
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.73 E-value=0.00086 Score=59.55 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC--CCccEEEecCc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG--NKVPFCPMVGS 45 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~--~~~~~v~i~~~ 45 (409)
++.-++|.||||+||||+++.|++.++ ...+++.+++.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 456788999999999999999999874 11246666543
No 231
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.73 E-value=0.0011 Score=59.10 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+.-|.|.||+|+||||+++.|++ +|. +++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~--~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGI--NVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTC--EEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCC--EEEEc
Confidence 35788999999999999999998 774 55543
No 232
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.71 E-value=0.0012 Score=58.57 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC---CCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG---NKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~---~~~~~v~i~~~~l 47 (409)
++.-+.+.||+|+||||+++.|+..+. .....+.+++..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 456778999999999999999999885 2245566655443
No 233
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.71 E-value=0.0012 Score=58.37 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
..-|.+.||+|||||++++.||+.+|+ +|+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~--~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI--PLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC--CEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc--CEEC
Confidence 346889999999999999999999996 7774
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.69 E-value=0.0012 Score=58.27 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=24.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++++-+.|.||+|+||||++++|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567889999999999999999998864
No 235
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.69 E-value=0.0027 Score=62.35 Aligned_cols=42 Identities=12% Similarity=0.016 Sum_probs=29.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-------CccEEEecCch
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN-------KVPFCPMVGSE 46 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-------~~~~v~i~~~~ 46 (409)
|..++.-++|+||||||||+|+..+|-..-. .-..+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5566778999999999999999987744311 12366666644
No 236
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.66 E-value=0.006 Score=53.55 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=46.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCc-------hhhhhhh-----------------h-hhHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGS-------EVFSSEI-----------------K-KTEVLME 60 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~-------~l~~~~~-----------------~-~~e~l~~ 60 (409)
...+++|+++|.||||.|-++|-.. |.++-|+..... .+..... . .......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4678999999999999999998765 555555533222 1222110 0 1123455
Q ss_pred HHHHHHhh-hhcccceEEecccccc
Q psy2778 61 NFRRAIGL-RIKESKEVYEGEVTEL 84 (409)
Q Consensus 61 ~f~~a~~~-~~~~~~ii~iDEid~i 84 (409)
.+..+... ......+|++||+-..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~a 132 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYM 132 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 55555432 2346789999999653
No 237
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.65 E-value=0.0008 Score=59.46 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+.-+.+.||||+||||+++.|++.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999977
No 238
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.65 E-value=0.0012 Score=63.26 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~ 45 (409)
.-|++.||+|+|||++|..||+.++. .++..+.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~--~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG--EIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE--EEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC--ceeccccc
Confidence 46889999999999999999999973 56665553
No 239
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.64 E-value=0.00095 Score=60.41 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHH
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~ 31 (409)
|..++.-+.|.||+|+||||++++++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455677889999999999999999983
No 240
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.63 E-value=0.00097 Score=59.54 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-+.|.||+|+||||+++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556678899999999999999999865
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.62 E-value=0.0012 Score=57.51 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+-+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5678999999999999999998874
No 242
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.62 E-value=0.00075 Score=66.73 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-|+++||||+||||+|+.|++.+++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 467889999999999999999998874
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.62 E-value=0.0011 Score=58.47 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+++.+.|.||+|+||||+++.|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356789999999999999999998763
No 244
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0011 Score=59.94 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=28.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGS 45 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~ 45 (409)
|..++.-++++||||+|||+++..+|... +. +.+.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~--~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE--PGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC--eEEEEEcc
Confidence 45567788999999999999998887654 32 45555543
No 245
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.54 E-value=0.0013 Score=61.27 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
+.-|.|+|||||||||+++.|+ .+|. +++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~--~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGA--YIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTC--EEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCC--cEEeh
Confidence 3468899999999999999999 5774 55543
No 246
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.52 E-value=0.0015 Score=63.88 Aligned_cols=34 Identities=18% Similarity=0.454 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
+.-|++.||+|+|||+++..||+.++. .++..++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~--~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG--EVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE--EEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC--eEeecCc
Confidence 456889999999999999999999974 5555444
No 247
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.50 E-value=0.0057 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.693 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++++++.+|+|+|||.++...+...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988777654
No 248
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.49 E-value=0.0023 Score=57.49 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEec
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMV 43 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~ 43 (409)
-.+++.||||||||+++-.+|..+ |.++-++.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 379999999999999999999876 4433344443
No 249
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.49 E-value=0.002 Score=66.72 Aligned_cols=37 Identities=30% Similarity=0.606 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~~~~ 46 (409)
.+.-|+|+|+||+||||+|++|++.+ |. +++.+++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~--~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI--PCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--eEEEechHH
Confidence 45679999999999999999999999 75 777776533
No 250
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.46 E-value=0.0017 Score=58.64 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-|.|.||||+||||+++.|++.++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999986
No 251
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.44 E-value=0.0015 Score=57.72 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|+||||+++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999876
No 252
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.42 E-value=0.035 Score=56.62 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=33.0
Q ss_pred heeecCCCCHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHhcCCccHHHHHHHH
Q psy2778 312 LIIRTTPYNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLL 363 (409)
Q Consensus 312 ~~i~~~~~~~~e~~~il~~~~~~~~~-~i~~~~l~~I~~~s~~g~~R~al~ll 363 (409)
.++.+++++.+|-.+++...+-.... +-.++....|++.+ +|-| -|+.++
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c-~GlP-LAl~~~ 336 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS-SGNP-ATLMMF 336 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHH-TTCH-HHHHHH
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-CCCh-HHHHHH
Confidence 35889999999999999977532221 11234667788888 7766 444443
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.40 E-value=0.0017 Score=60.39 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=24.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-++|+||||+|||+++..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45566789999999999999999999755
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.39 E-value=0.0017 Score=55.69 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA 30 (409)
++.-+.|.||+|+||||+++++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45568899999999999999744
No 255
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.35 E-value=0.00094 Score=59.05 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
-|.|.||||+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999985
No 256
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.0021 Score=58.03 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=23.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
|..++.-++++||||+|||++|..+|..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5566778999999999999999887654
No 257
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.33 E-value=0.0023 Score=59.93 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=25.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-++|.||||+|||++++.+|..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45566778999999999999999999876
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.32 E-value=0.0023 Score=57.22 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||+|+||||+++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678899999999999999999876
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.32 E-value=0.0046 Score=61.24 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+|.-++++||||+||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999877
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.31 E-value=0.0026 Score=56.29 Aligned_cols=27 Identities=22% Similarity=0.660 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|+||||++++|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345678999999999999999999874
No 261
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.30 E-value=0.0021 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.++++||.||||+|||++|.++.+. |+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~ 41 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GH 41 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CC
Confidence 3679999999999999999999985 54
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.30 E-value=0.0026 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
.++.-+.|.||.|+|||||.++|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344568899999999999999999987
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.18 E-value=0.0033 Score=56.41 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|+|||||.++|+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 455678999999999999999999864
No 264
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.18 E-value=0.003 Score=55.32 Aligned_cols=24 Identities=42% Similarity=0.797 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
..+.|.||+|+||||+++.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468899999999999999999876
No 265
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.15 E-value=0.0039 Score=58.84 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
++.-+.|.||+|+||||+++.||..+..+---+.+.+.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 45678899999999999999999887322123444554443
No 266
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.15 E-value=0.0031 Score=56.27 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.+.-|.|.||+|+||||+++.|++.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4566788999999999999999999884
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.14 E-value=0.0029 Score=55.69 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.+.||+|+||||+++.|+..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999976
No 268
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.11 E-value=0.0037 Score=58.93 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
..++..+.|+||+|+|||||++.|+..+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 34567888999999999999999999873
No 269
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.06 E-value=0.0038 Score=54.35 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=39.0
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhh-eeecCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTTP 318 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~ 318 (409)
.+++|||++.++++ .+.+|.+..+. ..++++...... --.+++..++.+++++. +..++.
T Consensus 78 dvviIDE~Q~~~~~-------~~~~l~~l~~~-~~~Vi~~Gl~~~--------f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 78 RGVFIDEVQFFNPS-------LFEVVKDLLDR-GIDVFCAGLDLT--------HKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp EEEEECCGGGSCTT-------HHHHHHHHHHT-TCEEEEEEESBC--------TTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CEEEEECcccCCHH-------HHHHHHHHHHC-CCCEEEEeeccc--------cccCCccchHHHHHHhhheEEeee
Confidence 48899999999877 77777777766 445555554310 12356777788888884 334433
No 270
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.04 E-value=0.0024 Score=57.40 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=16.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH-HHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMS-HEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA-~~l 33 (409)
++.-+.|.||+|+||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34568899999999999999999 765
No 271
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.03 E-value=0.0036 Score=62.57 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+.+++.||||||||+++.++++.+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999887
No 272
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.02 E-value=0.0039 Score=56.65 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-+-|.||+|+||||+++.|+..+|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 345779999999999999999998873
No 273
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.01 E-value=0.01 Score=60.91 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
.+-++++||+|+|||++|..+++
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 46789999999999999999864
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.97 E-value=0.0035 Score=59.51 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=24.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-++++||||+|||+++..+|...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556678999999999999999999863
No 275
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.95 E-value=0.0045 Score=55.69 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEE
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~ 41 (409)
.-|.+.|++|||||++++.||+.+|+ +|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~--~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI--HFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC--EEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC--cEEc
Confidence 35789999999999999999999996 6654
No 276
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.95 E-value=0.0037 Score=63.50 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-|+|+|+||+||||+|+.||+.+++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999999864
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.95 E-value=0.0048 Score=58.47 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=29.8
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecC
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVG 44 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~ 44 (409)
.|..++.-+++.|+||+|||+++..+|..... ..+.+.++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 35667778999999999999999999876521 124554443
No 278
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.93 E-value=0.0045 Score=56.16 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=24.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.+.+.-|.|.||||+||||+++.|++.+.
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344566789999999999999999999884
No 279
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.92 E-value=0.0035 Score=65.47 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH-HHcCCCccEEEecCc
Q psy2778 11 AILMAGPPGTGKTAIALAMS-HELGNKVPFCPMVGS 45 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA-~~l~~~~~~v~i~~~ 45 (409)
-.|++||||||||+++-.+. ..+.....++-+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 57899999999998654444 333222355555544
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.89 E-value=0.0045 Score=62.68 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
++.++++.||+|+||||+.++++..+......+.+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 4567999999999999999999988754334454444
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.89 E-value=0.0055 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
..-+.|.||+|+||||++..|+..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999875
No 282
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.89 E-value=0.0039 Score=54.02 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
+|++|++|+|||++|..+|.. +. +.+++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~--~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP--QVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS--SEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC--CeEEEecCCC
Confidence 789999999999999999987 64 6777766543
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.84 E-value=0.0049 Score=58.18 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+++.||+|+||||++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 284
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.84 E-value=0.0074 Score=52.89 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHcCCCccEEEecC
Q psy2778 9 GRAILMAGPPGTGKT-AIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT-~la~alA~~l~~~~~~v~i~~ 44 (409)
++=.++|||.|+||| .|.+++.+.......++.+++
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 456778999999999 888988877644345666653
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.81 E-value=0.0049 Score=59.89 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++..+++.||+|+||||+.++|+..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456789999999999999999998763
No 286
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.80 E-value=0.0061 Score=57.07 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-|.+.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678999999999999999999885
No 287
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.79 E-value=0.0052 Score=55.60 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
|.-|.|.|++|+||||+++.|++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999984
No 288
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.75 E-value=0.0056 Score=57.53 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-++|.||+|+||||++..||..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999776
No 289
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.73 E-value=0.0063 Score=58.82 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
++..+++.||+|+||||++++|+..+...-..+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 456899999999999999999998775322334333
No 290
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0068 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
...+++.||||+|||+++.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999754
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.70 E-value=0.0061 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
.-+.|.||+|+||||++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999886
No 292
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.67 E-value=0.0064 Score=57.30 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+|.-+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 293
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.66 E-value=0.0071 Score=57.25 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.++.-+-|.||+|+||||+++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3455677999999999999999999874
No 294
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.64 E-value=0.0059 Score=62.75 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCC--ccEEEecCch
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGNK--VPFCPMVGSE 46 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~~--~~~v~i~~~~ 46 (409)
+.-|+|.|+||+||||+|++|++.++.. .+++.+++..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 3568899999999999999999998620 2566666543
No 295
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.63 E-value=0.0055 Score=61.87 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
..|.|.|+|||||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999984
No 296
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.62 E-value=0.0044 Score=58.06 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.-|.+.||+|+||||+++.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999875
No 297
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.61 E-value=0.0083 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-.+|+||.|+|||++++||+..++.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 346689999999999999999998863
No 298
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.61 E-value=0.0052 Score=61.21 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.++|+||||+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 5679999999999999999888765
No 299
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.60 E-value=0.0076 Score=57.45 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+|.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46678899999999999999999876
No 300
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.56 E-value=0.0069 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|.|.||+|+||||+++.|++.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45588999999999999999999884
No 301
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.56 E-value=0.0058 Score=52.16 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=50.3
Q ss_pred CcccccccccccccccC-chhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCCchhhhhhhheeecCCCCH
Q psy2778 243 GVLFIDEVHMLDLETFM-PHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 321 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~-~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~i~~~~~~~ 321 (409)
.+++|||++.+....-. .....+++|...++.. ...+|++++... ......+++.+++||..+.+.+++.
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~~i~~~~p~~ 187 (195)
T 1jbk_A 117 VILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDE--------YRQYIEKDAALERRFQKVFVAEPSV 187 (195)
T ss_dssp EEEEEETGGGGTT------CCCCHHHHHHHHHTT-SCCEEEEECHHH--------HHHHTTTCHHHHTTEEEEECCCCCH
T ss_pred eEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-CeEEEEeCCHHH--------HHHHHhcCHHHHHHhceeecCCCCH
Confidence 48999999998522000 0012578888777664 345566665321 1112356788999999999999999
Q ss_pred HHHHHHH
Q psy2778 322 KDMEAII 328 (409)
Q Consensus 322 ~e~~~il 328 (409)
++..+++
T Consensus 188 ~~~~~il 194 (195)
T 1jbk_A 188 EDTIAIL 194 (195)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9988765
No 302
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.51 E-value=0.0085 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+.-|.|.||+|+||||+++.|++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457889999999999999999999985
No 303
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.51 E-value=0.0085 Score=59.76 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=25.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-+++.||||+|||+++..+|..+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677789999999999999999998765
No 304
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.50 E-value=0.0091 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.-+-+.||+||||||+++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4677999999999999999999875
No 305
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.49 E-value=0.0069 Score=54.87 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
.++.-+.+.||.|+|||||.++|+..+...---+.+++.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 68 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE
Confidence 3456788999999999999999997664221234445443
No 306
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.48 E-value=0.0074 Score=53.86 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~ 45 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 71 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 71 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 45567899999999999999999766432223444443
No 307
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.47 E-value=0.0065 Score=54.59 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 67 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKE 67 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 445678999999999999999997654222234444433
No 308
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.46 E-value=0.0074 Score=55.62 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI 70 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 4556789999999999999999987643223445555443
No 309
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.45 E-value=0.0072 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||.|+|||||.++|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998654
No 310
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.45 E-value=0.0079 Score=54.92 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~ 72 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 456788999999999999999998764322244555544
No 311
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.43 E-value=0.0087 Score=59.01 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
++.-+++.||+|+||||+.++++..+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3455789999999999999999998853
No 312
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.41 E-value=0.0091 Score=59.37 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=30.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHcC--CCccEEEecC
Q psy2778 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELG--NKVPFCPMVG 44 (409)
Q Consensus 4 ~g~~~~~~iLl~GPpGtGKT~la~alA~~l~--~~~~~v~i~~ 44 (409)
.|..++.-+++.||||+|||+++..+|...- ...+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3566777899999999999999999987652 1235555544
No 313
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.41 E-value=0.0036 Score=57.51 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|.|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999999984
No 314
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.41 E-value=0.0073 Score=59.73 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+|.-+++.||||+||||++..||..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35778999999999999999999776
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.40 E-value=0.0067 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
++.-+.+.||.|+|||||.++|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999975
No 316
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.40 E-value=0.0085 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+-|.||+|+||||+++.|+..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345677999999999999999999875
No 317
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.39 E-value=0.0073 Score=59.83 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.++++||||+||||++..||..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 318
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.37 E-value=0.0083 Score=55.09 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 70 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD 70 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 455688999999999999999998764322234555543
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.36 E-value=0.0093 Score=49.44 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..+++.|++|+|||+++.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 320
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.35 E-value=0.0093 Score=57.62 Aligned_cols=26 Identities=12% Similarity=0.359 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+..+.+.||+|+|||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999999876
No 321
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.33 E-value=0.0091 Score=55.29 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i 83 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL 83 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 4557889999999999999999987643223345555443
No 322
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.33 E-value=0.008 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.+.||.|+|||||.++|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455788999999999999999997653
No 323
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.32 E-value=0.0092 Score=62.04 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999888777665
No 324
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.31 E-value=0.0069 Score=61.90 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++..+.|.||+||||||++++||+.++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 345788999999999999999999985
No 325
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.30 E-value=0.0078 Score=60.30 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+..|++.|+||+||||+++.||+.+++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 357899999999999999999999864
No 326
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.30 E-value=0.012 Score=56.85 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchhh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF 48 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l~ 48 (409)
+|.-+.|.||+|+||||+++.||..+...---+.+.+.+++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 45678899999999999999999886311123444454443
No 327
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.29 E-value=0.0099 Score=54.91 Aligned_cols=40 Identities=23% Similarity=0.521 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 4556889999999999999999987643223455555443
No 328
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.29 E-value=0.18 Score=51.37 Aligned_cols=74 Identities=18% Similarity=0.096 Sum_probs=46.8
Q ss_pred CcccccccccccccccCchhhhHHHHHHHhccc--CCceEEEecCcceeeecccccCCCCCCCchhhhhhh-heeecCCC
Q psy2778 243 GVLFIDEVHMLDLETFMPHLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPY 319 (409)
Q Consensus 243 gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~i~~~~~ 319 (409)
-+++|||++.+-... ..+....|.+..... .+-.+|++|++.. ...++..+++-| ..|.+.--
T Consensus 345 ivvVIDE~~~L~~~~---~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs-----------~d~I~~~Iran~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---GKKVEELIARIAQKARAAGIHLILATQRPS-----------VDVITGLIKANIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT---CHHHHHHHHHHHHHCTTTTEEEEEEESCCC-----------TTTSCHHHHHTCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh---hHHHHHHHHHHHHHHhhCCeEEEEEecCcc-----------cccccHHHHhhhccEEEEEcC
Confidence 489999998663210 012455666655544 4467888987641 125677777777 34667777
Q ss_pred CHHHHHHHHHH
Q psy2778 320 NQKDMEAIIKL 330 (409)
Q Consensus 320 ~~~e~~~il~~ 330 (409)
+..+...++..
T Consensus 411 s~~Dsr~ILd~ 421 (574)
T 2iut_A 411 SKIDSRTILDQ 421 (574)
T ss_dssp CHHHHHHHHSS
T ss_pred CHHHHHHhcCc
Confidence 77787777753
No 329
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.28 E-value=0.011 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|.|.||+|+||||.++.|++.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999883
No 330
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.27 E-value=0.0097 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998863
No 331
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.27 E-value=0.0088 Score=54.68 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++..+.|.||.|+|||||.++|+..+... --+.+++.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~ 62 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQP 62 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEE
Confidence 45578899999999999999999876532 344455543
No 332
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.27 E-value=0.0094 Score=54.98 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 87 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGIN 87 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 455678999999999999999998764222234555544
No 333
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.26 E-value=0.011 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..+.+.||+|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999975
No 334
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.26 E-value=0.012 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-|.|.|++|+||||+++.|++.++
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678899999999999999999875
No 335
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.26 E-value=0.0096 Score=54.06 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 455678999999999999999998664222234445443
No 336
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.25 E-value=0.01 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+++.++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999999863
No 337
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.21 E-value=0.011 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
++.-+.|.||.|+|||||.++|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556889999999999999999975
No 338
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.21 E-value=0.012 Score=56.23 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=25.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-+++.|+||+|||+++..+|...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66777789999999999999999998764
No 339
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.20 E-value=0.0097 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 11 AILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l 33 (409)
.+.+.||+|+|||||.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999999754
No 340
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.20 E-value=0.011 Score=55.05 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++.-+.|.||.|+|||||.++|+..+...---+.+++.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 84 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKM 84 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 455688999999999999999998764322234444433
No 341
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.20 E-value=0.0099 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|++|+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.19 E-value=0.012 Score=55.99 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+++-++++||+|+||||++..||..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 343
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.18 E-value=0.012 Score=49.08 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||+++.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 344
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.18 E-value=0.012 Score=53.44 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.-+.+.||.|+|||||.++|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677999999999999999997664
No 345
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.17 E-value=0.01 Score=57.12 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||....
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 345678999999999999999998654
No 346
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.013 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+++.++...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999875
No 347
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.16 E-value=0.01 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.+.||.|+|||||.++|+..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456788999999999999999997654
No 348
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.14 E-value=0.0099 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|++|+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999854
No 349
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.14 E-value=0.013 Score=58.81 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||+|+||||+++.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45678899999999999999999876
No 350
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.12 E-value=0.01 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.+.||.|+|||||.++|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45678899999999999999999755
No 351
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.11 E-value=0.012 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.605 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
++.-+.|.||.|+|||||.++|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999999975
No 352
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.10 E-value=0.011 Score=61.27 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.++++||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988877665
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.0077 Score=51.74 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCC---ccEEEecCch
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNK---VPFCPMVGSE 46 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~---~~~v~i~~~~ 46 (409)
..+.+.||+|+||||+++.|+..+... .-.+.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 467899999999999999999987421 2345555544
No 354
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.07 E-value=0.011 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
..+.+.|+||+|||+|..+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999974
No 355
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.05 E-value=0.011 Score=54.84 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
++.-+.|.||.|+|||||.++|+..+...-=-+.+++.++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 3456889999999999999999986642222345555443
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.04 E-value=0.013 Score=56.44 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||....
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345678999999999999999997654
No 357
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.04 E-value=0.031 Score=55.60 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=32.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCc-hhhhhhhh
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS-EVFSSEIK 53 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~-~l~~~~~~ 53 (409)
+.+|+++|+|+|||..+-.++...+. +.+.+.+. .+...|..
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~--~~Lvl~P~~~L~~Q~~~ 151 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELST--PTLIVVPTLALAEQWKE 151 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCS--CEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCC--CEEEEECCHHHHHHHHH
Confidence 46999999999999999888888764 66666665 55554443
No 358
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.01 E-value=0.013 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||.-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 345678999999999999999997654
No 359
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.99 E-value=0.17 Score=36.08 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCC-CCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhcc
Q psy2778 326 AIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 391 (409)
Q Consensus 326 ~il~~~~~~~~~-~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~~ 391 (409)
..+....++.|+ .+++.+...+.+.. -||+..+++.|..+|.-.|++.|+.+||+-+...-+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~----~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFT----FRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 345556667787 89999999999998 589999999999999888999999999998876543
No 360
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.99 E-value=0.014 Score=56.46 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 345677999999999999999997654
No 361
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.98 E-value=0.019 Score=55.18 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEec
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMV 43 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i~ 43 (409)
..|.|+|+||+||||++.+|+..+ |.++-++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 478899999999999999999886 5444444444
No 362
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.98 E-value=0.014 Score=56.76 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||....
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 345678999999999999999998664
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.97 E-value=0.015 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||+++.++...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 364
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.96 E-value=0.013 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.+.+.||+|+|||||.++|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998764
No 365
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.96 E-value=0.015 Score=49.11 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||++..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999854
No 366
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.96 E-value=0.015 Score=57.89 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=29.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecC
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVG 44 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~ 44 (409)
|..++.-+++.|+||+|||+++..+|...-. ..+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 6677778999999999999999998876511 124554443
No 367
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.93 E-value=0.014 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
-.|++.|+||+|||+|+.++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4799999999999999999874
No 368
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.93 E-value=0.013 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||.|+|||||.++|+..+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455688999999999999999997664
No 369
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.92 E-value=0.011 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
-.+++.|+||+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 370
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.92 E-value=0.014 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
-.|++.|+||+|||++..++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999986
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.92 E-value=0.014 Score=56.47 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||....
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 345678999999999999999997654
No 372
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.91 E-value=0.015 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999999853
No 373
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.89 E-value=0.015 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 345678999999999999999997654
No 374
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.89 E-value=0.02 Score=57.75 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC--CccEEEecC
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN--KVPFCPMVG 44 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~--~~~~v~i~~ 44 (409)
|..++.-+++.||||+|||+++..+|...-. ..+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 5667778999999999999999999987632 235555554
No 375
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.89 E-value=0.016 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||++..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 376
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.88 E-value=0.016 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+++..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999999864
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.88 E-value=0.012 Score=56.56 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCch
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~ 46 (409)
++.-+.|.||+|||||||.++||.-....-=-+.+++.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 63 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 445678999999999999999997664222234444433
No 378
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.88 E-value=0.013 Score=53.66 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||.|+|||||.++|+..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455688999999999999999997653
No 379
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.88 E-value=0.013 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||.|+|||||.++|+..+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455678999999999999999997654
No 380
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.025 Score=41.60 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=33.1
Q ss_pred CCccHHHHHHHHhhcCH-------hhHHHhhcCCCC--hHHHHHHHHHHHhh
Q psy2778 170 PKGDVHKKKEVIQDVTL-------HDLDMANAKPQG--GQDILSMVGQLIKS 212 (409)
Q Consensus 170 p~~~~~~r~~il~~~~~-------~dl~~~a~~~~g--gadi~~l~~~~~~~ 212 (409)
|.|+...|..||+.+.. -+++.++..|+| ||||.++|..+...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~ 52 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY 52 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34577778888886532 268999999999 99999999766533
No 381
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.85 E-value=0.014 Score=49.60 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.-.|++.|+||+|||+|..++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999853
No 382
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.84 E-value=0.015 Score=59.12 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=27.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHH--HHHcCCCccEEEecCc
Q psy2778 6 KMAGRAILMAGPPGTGKTAIALAM--SHELGNKVPFCPMVGS 45 (409)
Q Consensus 6 ~~~~~~iLl~GPpGtGKT~la~al--A~~l~~~~~~v~i~~~ 45 (409)
..++..++|.||+|+|||||++.+ +......-.-+.+++.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 345678999999999999999994 4443211134555553
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.028 Score=49.56 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
..+++.|+||+||||++..++..+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999999988743
No 384
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.79 E-value=0.018 Score=48.01 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||+++.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999863
No 385
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.78 E-value=0.015 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
+..+.+.|+||+|||+|..+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999854
No 386
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.78 E-value=0.019 Score=47.69 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy2778 11 AILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~ 32 (409)
.|++.|+||+|||+++.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 387
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.77 E-value=0.017 Score=48.30 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy2778 11 AILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~ 31 (409)
.|++.|+||+|||+|+.++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999863
No 388
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.76 E-value=0.021 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
...|++.|+||+|||+++.++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 389
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.76 E-value=0.019 Score=47.98 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
...|++.|+||+|||+|..++..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999975
No 390
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.76 E-value=0.026 Score=53.93 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||||+||||+.++|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999999775
No 391
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.75 E-value=0.016 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
+..+++.|++|+|||+|..+++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999985
No 392
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.017 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
-.|++.|+||+|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999985
No 393
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.75 E-value=0.018 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999863
No 394
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.74 E-value=0.026 Score=55.99 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~ 44 (409)
++.-+.|.||+|||||||.+.||.....+.-.+.+.+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 4567889999999999999999999865433444444
No 395
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.74 E-value=0.013 Score=55.32 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
.++.-+-|.||+|+|||||++.|+..+...---+.+++.++
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 34567889999999999999999987643222355555444
No 396
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.73 E-value=0.016 Score=61.83 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
...++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 467999999999999888777665
No 397
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.72 E-value=0.022 Score=57.37 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCCccEEEe
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL---GNKVPFCPM 42 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l---~~~~~~v~i 42 (409)
+++.|+++|+||+||||++..||..+ |.++-++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35689999999999999999999776 553444433
No 398
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.71 E-value=0.016 Score=58.98 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
|..++.-+++.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34556778999999999999999999765
No 399
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.71 E-value=0.028 Score=53.98 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEec
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~ 43 (409)
++.-+.|.||+|+||||+.+.|+.....+.-.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~ 105 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALI 105 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 356789999999999999999999987543333333
No 400
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.66 E-value=0.014 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
.++++||.||||+|||++|.++.+. |+
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~-G~ 172 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK-NH 172 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CC
Confidence 3679999999999999999998763 54
No 401
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.63 E-value=0.016 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|+||+|||+|+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 402
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.62 E-value=0.031 Score=49.35 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 11 AILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
=|.|-|+.|+||||+++.|++.+....+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 36788999999999999999998544455543
No 403
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.62 E-value=0.017 Score=48.15 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA 30 (409)
-.|++.|+||+|||+|..++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999885
No 404
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.60 E-value=0.019 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999853
No 405
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.60 E-value=0.018 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|.|.|+||+||||+..++...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 406
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.59 E-value=0.018 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||+||||||+.++||..+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45678899999999999999999643
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.56 E-value=0.013 Score=56.50 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
++.-+.|.||+|||||||.++||....
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345677999999999999999997654
No 408
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.56 E-value=0.02 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|+||+|||++..++...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 409
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.56 E-value=0.021 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999853
No 410
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.55 E-value=0.022 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+++.++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 411
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.54 E-value=0.019 Score=48.73 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 357999999999999999999863
No 412
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.52 E-value=0.021 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.-.|++.|+||+|||+|+.++...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998853
No 413
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.52 E-value=0.022 Score=49.01 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 414
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=94.52 E-value=0.035 Score=41.80 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHhhcCHh-------hHHHhhcCCCC--hHHHHHHHHHHH
Q psy2778 170 PKGDVHKKKEVIQDVTLH-------DLDMANAKPQG--GQDILSMVGQLI 210 (409)
Q Consensus 170 p~~~~~~r~~il~~~~~~-------dl~~~a~~~~g--gadi~~l~~~~~ 210 (409)
.+|+...|.+||+..+.. |++.+|+.|+| ||||.++|+.+.
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa 58 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAG 58 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
No 415
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.50 E-value=0.022 Score=48.76 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.-.|++.|++|+|||+++.+++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 416
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.48 E-value=0.018 Score=53.05 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+..+.+.||.|+|||||.++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999765
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.48 E-value=0.023 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 418
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.47 E-value=0.02 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
..|++.|+||+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999864
No 419
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.46 E-value=0.023 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.-.|++.|+||+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 420
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.46 E-value=0.021 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+|+.++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999865
No 421
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.46 E-value=0.023 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++..+.++||+|+||||++..+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 422
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.43 E-value=0.022 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|+.++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 423
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.43 E-value=0.033 Score=49.06 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q psy2778 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGN 35 (409)
Q Consensus 5 g~~~~~~iLl~GPpGtGKT~la~alA~~l~~ 35 (409)
+..|+.-|+++|.||+||+++|..+.+.++.
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 3446678899999999999999999887763
No 424
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.41 E-value=0.019 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||.|+|||||.++|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45578899999999999999999755
No 425
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.39 E-value=0.025 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+++.++++||||||||+++..||+.+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 46789999999999999999998865
No 426
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.38 E-value=0.025 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999854
No 427
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.38 E-value=0.036 Score=49.15 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEe
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i 42 (409)
-.|=|+|.+||||||+++.+++ +|. +++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~--~vida 39 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGA--SLVDT 39 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTC--EEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCC--cEEEC
Confidence 4688999999999999999998 885 66643
No 428
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.36 E-value=0.022 Score=53.79 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.++++||.||+|+|||++|.++.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3679999999999999999999875
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.025 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+.++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999764
No 430
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.35 E-value=0.024 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
...|++.|++|+|||++..++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999974
No 431
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.35 E-value=0.0098 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~ 31 (409)
++..+.|.||+|+|||||.++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999998864
No 432
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.32 E-value=0.025 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
...+++.|++|+|||+++..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999998864
No 433
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.32 E-value=0.093 Score=57.25 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.+-+.++||+|+|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 357889999999999999999864
No 434
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.32 E-value=0.019 Score=58.56 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-CccEEEecC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELGN-KVPFCPMVG 44 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~~-~~~~v~i~~ 44 (409)
+.-|+|+|+||+||||+|+.|++.++. ..++..+++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 356889999999999999999998752 123444443
No 435
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.31 E-value=0.022 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy2778 11 AILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~ 31 (409)
.|++.|+||+|||+++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999874
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.28 E-value=0.027 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|+.++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 437
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.025 Score=60.47 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
...|+.||||||||+++..+...+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999877665543
No 438
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.24 E-value=0.042 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
..+++.|++|+||||++..+|..+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999876
No 439
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.22 E-value=0.028 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|+.++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 440
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.20 E-value=0.34 Score=44.97 Aligned_cols=102 Identities=12% Similarity=0.004 Sum_probs=56.3
Q ss_pred ccCCccccccccccccccc-Cc-----hhhhHHHHHHHhcc-------------c-CCceEEEecCcceeeecccccCCC
Q psy2778 240 LVPGVLFIDEVHMLDLETF-MP-----HLETFTYLHRALES-------------A-IAPIVIFATNRGRCLVRGTDDIIS 299 (409)
Q Consensus 240 ~~~gvl~ide~~~l~~~~~-~~-----~~~~~~~L~~~~e~-------------~-~~~~~i~~~~~~~~~~~~~~~~~~ 299 (409)
-.+.++||||++.+....- .+ ..+.++.|...|+. . ...+||.+||.
T Consensus 98 ~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~------------- 164 (293)
T 3t15_A 98 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND------------- 164 (293)
T ss_dssp SSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS-------------
T ss_pred CCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC-------------
Confidence 3568999999987765200 00 01245778777752 1 23556666653
Q ss_pred CCCCchhhhh--hhheeecCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHH
Q psy2778 300 PHGIPLDLLD--RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLR 357 (409)
Q Consensus 300 ~~~~~~~l~~--r~~~i~~~~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R 357 (409)
+..+++.++. |+..+-. .++.++..+|++......++ +.+.+..++.--.+.++.
T Consensus 165 ~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCHH
T ss_pred cccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccHH
Confidence 4567777874 6643222 34999999999987776654 445555444443244443
No 441
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.20 E-value=0.027 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+|+.++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999854
No 442
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.029 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|+||+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999864
No 443
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.19 E-value=0.03 Score=54.50 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=54.9
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhcccCCceEEEecCcceeeecccccCCCCCCC---chhhhhhhheeecCC
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGI---PLDLLDRLLIIRTTP 318 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~l~~r~~~i~~~~ 318 (409)
+.++++||+|.+-........+.+..+.+..-. ..-.++++|+....+ . ...+ -..+++.|-..-+-+
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~-------~-~~~~~~~~~~il~n~~~~i~l~ 333 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDF-------L-APEVQRYGQALLDNPTYKLLLA 333 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGG-------G-STTTHHHHHHHHHSCSEEEECS
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHh-------h-ChhhHHHHHHHHHhhhhhheeC
Confidence 689999999987531000112233444444332 446677788754221 1 1111 246888886655566
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCc
Q psy2778 319 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS 354 (409)
Q Consensus 319 ~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g 354 (409)
.+..+...+.+ . +.+++...+.|..+. .|
T Consensus 334 ~~~~~~~~~~~----~--~~ls~~e~~~l~~~~-~G 362 (392)
T 4ag6_A 334 QGEKDLEAITT----L--MNLSEAEHDLLVNAK-RG 362 (392)
T ss_dssp CCHHHHHHHHH----H--TTCCHHHHHHHHTCC-TT
T ss_pred CChhhHHHHHH----H--hCCCHHHHHhccCCC-Cc
Confidence 67666554433 2 237888888887765 44
No 444
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.19 E-value=0.032 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
..-+.|.||||+|||||..+|+..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999865
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.18 E-value=0.023 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+.-+++.||+|+||||++..+|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999877
No 446
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.18 E-value=0.028 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.|.||||+|||||+++|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 35578899999999999999999654
No 447
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.16 E-value=0.034 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.-.|++.|++|+|||++..++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999853
No 448
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.029 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
-.|++.|++|+|||+|+.++...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 479999999999999999998764
No 449
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.14 E-value=0.034 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+.-.+++||.|+|||++..||.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999776
No 450
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.03 Score=47.98 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|+||+|||+|+.++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 451
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.13 E-value=0.028 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+++.|+++|++|+||||++..||..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999776
No 452
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.13 E-value=0.03 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
-.|++.|+||+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999998887654
No 453
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.12 E-value=0.023 Score=48.10 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.-.|++.|+||+|||+|+..+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.026 Score=56.28 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++.-+.+.||.|+|||||++.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45678999999999999999999765
No 455
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.11 E-value=0.03 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
.-.|++.|++|+|||+|+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999888764
No 456
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.028 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 457
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.10 E-value=0.03 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46999999999999999998864
No 458
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.08 E-value=0.029 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
..|++.|+||+|||+|+.++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5799999999999999999984
No 459
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.07 E-value=0.035 Score=47.48 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+++.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 460
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.07 E-value=0.022 Score=56.04 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy2778 12 ILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 12 iLl~GPpGtGKT~la~alA~~ 32 (409)
+.|.||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999865
No 461
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.06 E-value=0.031 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|..++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.06 E-value=0.031 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|+||+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999999864
No 463
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.04 E-value=0.032 Score=47.85 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|..++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.04 E-value=0.03 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~ 31 (409)
+...|++.|+||+|||++..++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999874
No 465
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.03 E-value=0.032 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.03 E-value=0.032 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|++|+|||+|+.++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 467
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.01 E-value=0.033 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|++|+|||+|..++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 468
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.01 E-value=0.021 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA 30 (409)
....|++.|+||+|||++..++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999998876
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.00 E-value=0.033 Score=47.98 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
-.|++.|+||+|||+|..++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 470
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.99 E-value=0.031 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 471
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=93.98 E-value=0.18 Score=36.79 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhc
Q psy2778 318 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 390 (409)
Q Consensus 318 ~~~~~e~~~il~~~~~~~~~~i~~~~l~~I~~~s~~g~~R~al~ll~~~~~~a~~~~~~~I~~~~v~~~~~~~ 390 (409)
.++.++-.+|++...++..+. ++.-++.|++.+.+-+....-+++..|...|..++...|+.+|+..++.-.
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 467888899999887765432 344589999999667899999999999999888888899999999888643
No 472
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.96 E-value=0.027 Score=49.01 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA 30 (409)
+..|++.|+||+|||++..++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999999886
No 473
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.95 E-value=0.031 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 474
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.94 E-value=0.033 Score=53.76 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
++.-+-|.||+|+|||||.++|+......-=-+.+++.++
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i 92 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 4456789999999999999999986642222344555443
No 475
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.90 E-value=0.035 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|+||+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999853
No 476
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.88 E-value=0.019 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
+.-+.|.||.|+||||+++.|+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 455779999999999999999987
No 477
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.87 E-value=0.033 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+.++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 57999999999999999999864
No 478
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.83 E-value=0.032 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
...+++.|+||+|||+|..++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999874
No 479
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.034 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~ 32 (409)
...|++.|+||+|||+|..++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 358999999999999999999863
No 480
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.81 E-value=0.18 Score=49.24 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc--CCCccEEEecCc-hhhhhh
Q psy2778 11 AILMAGPPGTGKTAIALAMSHEL--GNKVPFCPMVGS-EVFSSE 51 (409)
Q Consensus 11 ~iLl~GPpGtGKT~la~alA~~l--~~~~~~v~i~~~-~l~~~~ 51 (409)
++++.+|+|+|||..+-+++... +.....+.+.+. .+...|
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~ 68 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQH 68 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHH
Confidence 89999999999999988877665 111256666664 444433
No 481
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.80 E-value=0.034 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|+||+|||+|+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 482
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.79 E-value=0.034 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|+.++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 483
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.79 E-value=0.099 Score=56.47 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~ 31 (409)
++.-++|+||.|+||||+.+.+|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 356789999999999999999874
No 484
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.78 E-value=0.036 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
++..+++.||+|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999887
No 485
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.73 E-value=0.043 Score=56.41 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCCccEEEecCchh
Q psy2778 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEV 47 (409)
Q Consensus 7 ~~~~~iLl~GPpGtGKT~la~alA~~l~~~~~~v~i~~~~l 47 (409)
.++..+.+.||+|+||||+++.++..+...---+.+++.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh
Confidence 34567889999999999999999987643223455555443
No 486
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.69 E-value=0.041 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 8 AGRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 8 ~~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
.+.-+.|.||+|+|||||.++|+ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 34567899999999999999999 553
No 487
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.64 E-value=0.023 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=10.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
..|++.|+||+|||+|+.++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998874
No 488
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.042 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
...|++.|++|+|||++..++..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999984
No 489
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.039 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+++.++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999865
No 490
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.53 E-value=0.04 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l 33 (409)
+..+.+.||||+||||++.+|+..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999775
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.52 E-value=0.045 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHEL 33 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~l 33 (409)
-.|++.|+||+|||+|...+...-
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCc
Confidence 469999999999999999998653
No 492
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.52 E-value=0.034 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
...|++.|++|+|||+|...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998864
No 493
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.51 E-value=0.039 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~ 31 (409)
..|++.|++|+|||+|+.++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999999874
No 494
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.49 E-value=0.042 Score=47.41 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMS 30 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA 30 (409)
...|++.|+||+|||+|+..+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999885
No 495
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.49 E-value=0.035 Score=52.04 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSHELG 34 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~~l~ 34 (409)
+.-+.|.||+|+|||||.++|+....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 45678999999999999999997653
No 496
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.49 E-value=0.041 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|+|.|+||+|||+++.+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 57999999999999999999853
No 497
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.48 E-value=0.043 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy2778 9 GRAILMAGPPGTGKTAIALAMSH 31 (409)
Q Consensus 9 ~~~iLl~GPpGtGKT~la~alA~ 31 (409)
...|++.|++|+|||+|...+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999874
No 498
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.041 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 499
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.43 E-value=0.043 Score=45.22 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=45.0
Q ss_pred CCcccccccccccccccCchhhhHHHHHHHhccc--CCceEEEecCcceeeecccccCCCCCCCchhhhhhhhe--eecC
Q psy2778 242 PGVLFIDEVHMLDLETFMPHLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI--IRTT 317 (409)
Q Consensus 242 ~gvl~ide~~~l~~~~~~~~~~~~~~L~~~~e~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~--i~~~ 317 (409)
.|++|+||++.++.+ .+..|.+.++.. ....+|.+||.... .. .. ++.++++.|+.. ++++
T Consensus 76 ~~~l~lDei~~l~~~-------~q~~Ll~~l~~~~~~~~~iI~~tn~~~~------~~-~~-~~~~~L~~rl~~~~i~lP 140 (143)
T 3co5_A 76 GGVLYVGDIAQYSRN-------IQTGITFIIGKAERCRVRVIASCSYAAG------SD-GI-SCEEKLAGLFSESVVRIP 140 (143)
T ss_dssp TSEEEEEECTTCCHH-------HHHHHHHHHHHHTTTTCEEEEEEEECTT------TC----CHHHHHHHHSSSEEEEEC
T ss_pred CCeEEEeChHHCCHH-------HHHHHHHHHHhCCCCCEEEEEecCCCHH------HH-Hh-CccHHHHHHhcCcEEeCC
Confidence 389999999999998 899999999875 34668888875421 11 12 267788888744 6666
Q ss_pred CC
Q psy2778 318 PY 319 (409)
Q Consensus 318 ~~ 319 (409)
|+
T Consensus 141 pL 142 (143)
T 3co5_A 141 PL 142 (143)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 500
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.42 E-value=0.044 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy2778 10 RAILMAGPPGTGKTAIALAMSHE 32 (409)
Q Consensus 10 ~~iLl~GPpGtGKT~la~alA~~ 32 (409)
..|++.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
Done!