RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2778
(409 letters)
>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 110 bits (277), Expect = 1e-30
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 71 KESKEVYEGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKEK 130
KE E+ EGEV E+ + + P G G V + LKT + L + ESL K+K
Sbjct: 1 KEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLGTKMIESLTKDK 55
Query: 131 VEVGDVIYIEANSGAVKRQGRSDTFA 156
V+ GDVI I+ +G + + GRS T A
Sbjct: 56 VQAGDVITIDKATGKISKLGRSFTRA 81
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 44.6 bits (105), Expect = 1e-05
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 22/136 (16%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS----------- 49
+ A +++ G +GKT + A+ LG K + + E S
Sbjct: 115 EFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVD 174
Query: 50 ---SEIKKTEVLMENFRRAIGLRIKESKEVYEGEVTELTPVETENPMGGYGKTVSHVIIG 106
+ + V+ ++ I + + + +G + V+I
Sbjct: 175 DIARAMLQHRVI---VIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIA 231
Query: 107 LKTAKGTKQLKLDPTI 122
D I
Sbjct: 232 -----SLNPTSNDDKI 242
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 41.4 bits (97), Expect = 1e-04
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMEN-FRRA 65
+ +L+ GPPG GKT +A A++ E VPF GS+ + + + F A
Sbjct: 43 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETA 97
Score = 38.3 bits (89), Expect = 9e-04
Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 22/187 (11%)
Query: 209 LIKSKKTEITDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHML----------DLETF 258
I + ++ + V + P ++FIDE+ + +
Sbjct: 70 FITASGSDFVEMFVGVGAARVRDLFET-AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDER 128
Query: 259 MPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTP 318
L E A +V+ ATNR DI+ P + DR I
Sbjct: 129 EQTLNQLLVEMDGFEKDTAIVVMAATNR--------PDILDPALLRPGRFDR--QIAIDA 178
Query: 319 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378
+ K E I+++ A + + +D L L++ + LL AAL A GR I
Sbjct: 179 PDVKGREQILRIHARGK-PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 237
Query: 379 SKQDILE 385
+ +D+ E
Sbjct: 238 TMKDLEE 244
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 41.7 bits (96), Expect = 1e-04
Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 14/150 (9%)
Query: 244 VLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGI 303
+ + E L + + + + R L + I
Sbjct: 141 FQSMLSSPRIAAEDLYTLLRVHE-EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES- 198
Query: 304 PLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGH--VLDDEALVTLSE-----IGTRSTL 356
+ Y +++ I++ RA V + L +S+ G +
Sbjct: 199 -----QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 253
Query: 357 RYVVQLLTPAALTAKTNGRTAISKQDILEV 386
R + L A A+ GR ++S+ + +
Sbjct: 254 RRAIVALKMACEMAEAMGRDSLSEDLVRKA 283
Score = 30.9 bits (68), Expect = 0.28
Identities = 6/33 (18%), Positives = 8/33 (24%)
Query: 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGN 35
G G GKT +A +
Sbjct: 40 AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 40.4 bits (93), Expect = 1e-04
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 7 MAGRAILMAGPPGTGKTAIALAMSHELGNK 36
M R I++ G GK+ I + L
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEP 30
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.5 bits (91), Expect = 2e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKV 37
+ G +L++G PG+GK+ IA A+++ G
Sbjct: 2 LGGNILLLSGHPGSGKSTIAEALANLPGVPK 32
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 39.4 bits (92), Expect = 4e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMEN-FRRA 65
+ +LM GPPGTGKT +A A++ E VPF + GS+ + + + F +A
Sbjct: 46 KGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVEMFVGVGASRVRDMFEQA 100
Score = 37.5 bits (87), Expect = 0.002
Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 22/187 (11%)
Query: 209 LIKSKKTEITDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHML----------DLETF 258
++ + V +Q + P ++FIDE+ + +
Sbjct: 73 FFTISGSDFVEMFVGVGASRVRDMFEQ-AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDER 131
Query: 259 MPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTP 318
L E IVI ATNR D++ P + DR +
Sbjct: 132 EQTLNQMLVEMDGFEGNEGIIVIAATNRP--------DVLDPALLRPGRFDR--QVVVGL 181
Query: 319 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAI 378
+ + E I+K+ + D ++ + + L+ AAL A + +
Sbjct: 182 PDVRGREQILKVHMRRV-PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 240
Query: 379 SKQDILE 385
S + +
Sbjct: 241 SMVEFEK 247
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 38.0 bits (87), Expect = 0.001
Identities = 34/266 (12%), Positives = 77/266 (28%), Gaps = 29/266 (10%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLR 69
A L+ G PG+GKT++ A+ E + + E++ + +
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEET--QGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHV 90
Query: 70 IKESKEVYEGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLQKE 129
S + E ++ L+ + T + ++TA + + +Y +
Sbjct: 91 TPYSNRMTEAIISRLS---DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPK 147
Query: 130 KVEV-GDVIYIEANSGAVKRQGRSDTFAAEFDLEAEEYVPLPKGDVHKKKEVIQ-DVTLH 187
G + E R ++ + ++ E +
Sbjct: 148 INSYLGTIERYETMYADDPMTAR---------ATPKQAHDIVVKNLPTNLETLHKTGLFS 198
Query: 188 DLDMANAKPQGGQDILSMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGIAELVPGVLFI 247
D+ + N + L + E +K KV K I + + +
Sbjct: 199 DIRLYNREGVKLYSSL----ETPSISPKETLEKELN--RKVSGKEIQPTLERIEQKM--- 249
Query: 248 DEVHMLDLETFMPHLETFTYLHRALE 273
+L+ P + +L+
Sbjct: 250 ----VLNKHQETPEFKAIQQKLESLQ 271
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 38.1 bits (88), Expect = 0.002
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49
R L GP +GKT +A A+ G +
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELCG--GKALNVNLPLDRL 192
Score = 37.3 bits (86), Expect = 0.003
Identities = 16/149 (10%), Positives = 28/149 (18%), Gaps = 15/149 (10%)
Query: 238 AELVPGVLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDI 297
+ +P I+ + L H + I P I N
Sbjct: 217 SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYS--------- 267
Query: 298 ISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLR 357
L I K + L+ L +
Sbjct: 268 ---VPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFA 324
Query: 358 YVVQLLTPAALTAKTNGRTAISKQDILEV 386
Q + + K S ++
Sbjct: 325 ---QSIQSRIVEWKERLDKEFSLSVYQKM 350
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 37.5 bits (86), Expect = 0.002
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLM-ENFRRA 65
+ +L GPPG GKT +A A+++E F + G E+ + ++E + E F +A
Sbjct: 42 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDKA 96
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 37.0 bits (84), Expect = 0.002
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42
++ + A+L+ PG G A+ A+S L + P
Sbjct: 17 SYQAGRGHH-ALLIQALPGMGDDALIYALSRYLLCQQPQGHK 57
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 37.2 bits (85), Expect = 0.002
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 3 KSKKMAGRAILMAGPPGTGKTAIALAMSH 31
S + ++L+ GPP +GKTA+A ++
Sbjct: 34 NSDRTPLVSVLLEGPPHSGKTALAAKIAE 62
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 37.0 bits (84), Expect = 0.003
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF-SSEIKKTEVLMENFRRAI 66
G + G TGK+ + ++ + G ++ +E V + + +
Sbjct: 33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRF 92
Query: 67 GLRIKE 72
GL +
Sbjct: 93 GLDPDD 98
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 36.5 bits (83), Expect = 0.003
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHEL--------GNKVPFCPMVGSEVFSSEI 52
K++K +L+ GPPG GKT +A ++HEL G + + + + +S
Sbjct: 27 AAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLE 86
Query: 53 KKTEVLMENFRRAIGLRIKESKEVYEGEVTELTPVETENPMGGYGKTVSHVIIGL 107
+ + ++ R + E V ++ + + +IG
Sbjct: 87 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 141
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 36.7 bits (83), Expect = 0.003
Identities = 11/85 (12%), Positives = 24/85 (28%)
Query: 2 IKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMEN 61
+++ + G PGTGKT + +K + + +
Sbjct: 36 LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 95
Query: 62 FRRAIGLRIKESKEVYEGEVTELTP 86
R S++ + + E
Sbjct: 96 SLNIPFPRRGLSRDEFLALLVEHLR 120
Score = 27.1 bits (58), Expect = 4.4
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 294 TDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHV--LDDEALVTLSEI- 350
D +++ + +IR +PY + + I+ RA ++ L +++I
Sbjct: 167 NDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 226
Query: 351 -------GTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 385
R R + +L +A A+ NGR I+ +D+ +
Sbjct: 227 GAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 268
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 35.5 bits (80), Expect = 0.006
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSE 51
G M G TGKT I ++ + G ++
Sbjct: 22 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 65
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 35.5 bits (80), Expect = 0.007
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43
+ + +L+ GP GTGK +A+ + + +
Sbjct: 26 LSDQPRDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 67
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 35.8 bits (81), Expect = 0.007
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVF-SSEIKKTEVLMENFRRAI 66
+ G G+GKT +A ++ + + GS ++ +E + +
Sbjct: 35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 94
Query: 67 GLRI 70
GL
Sbjct: 95 GLDP 98
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.4 bits (80), Expect = 0.009
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSE 46
+ AG G+GKT I L N +
Sbjct: 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAV 71
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 35.4 bits (80), Expect = 0.009
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRR 64
R IL+ GPPGTGKT IA A+++E G F + G E+ S ++E +
Sbjct: 39 RGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESESNLRKAFE 91
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 35.1 bits (79), Expect = 0.010
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 8 AGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIG 67
+ G TGKT ++ + G +F I + R I
Sbjct: 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIF---IDTENTFRPDRLRDIA 92
Query: 68 LRIKESKEVYEGEVTELTPVETENPM 93
R + V +E+ M
Sbjct: 93 DRFNVDHDAVLDNVLYARAYTSEHQM 118
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 35.0 bits (79), Expect = 0.012
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 7 MAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRR 64
+AG + P G GK+ +AL ++ ++ + E
Sbjct: 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHH 84
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 34.2 bits (77), Expect = 0.015
Identities = 15/66 (22%), Positives = 24/66 (36%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIK 71
I+M G P GKT I+ ++ L + ++ KT E F +K
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 64
Query: 72 ESKEVY 77
K+
Sbjct: 65 IRKQCA 70
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 34.7 bits (79), Expect = 0.016
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNKVPF 39
ILM GP G GKT IA ++ PF
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLAN--APF 77
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 33.9 bits (77), Expect = 0.020
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43
+I+ + +IL+ G + ++L + + P V
Sbjct: 9 IIEKSEGI--SILINGEDLSYPREVSLELPEYVEKFPPKASDV 49
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 33.1 bits (74), Expect = 0.032
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNK 36
+ G I + G +GK AIA A+ L +
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQ 33
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 33.4 bits (75), Expect = 0.033
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKK 54
IL G GTGKT + + E +++ +
Sbjct: 26 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLR 71
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 32.7 bits (73), Expect = 0.038
Identities = 11/64 (17%), Positives = 27/64 (42%)
Query: 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGL 68
++ G G+GK+A+A ++H+L + ++ E L ++ R+
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQ 65
Query: 69 RIKE 72
+ +
Sbjct: 66 ALND 69
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.9 bits (74), Expect = 0.039
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVP 38
++ G PG GK+ G
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 43
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.7 bits (73), Expect = 0.040
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKV 37
+ ++ GP G GK+ ++ +L N
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSA 30
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 33.2 bits (74), Expect = 0.042
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFR 63
RA ++ GPPG GKT A ++ ELG + + + ++N
Sbjct: 53 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMS 106
Score = 29.0 bits (63), Expect = 1.0
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 312 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 371
L I+ + +++ + A E LD + L + TR +R V+ LL+ + T K
Sbjct: 177 LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT-TRGDIRQVINLLSTISTTTK 235
Query: 372 TNGRTAISKQDILEVS 387
T I+ ++I E+S
Sbjct: 236 T-----INHENINEIS 246
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 33.2 bits (74), Expect = 0.046
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRR 64
K + L+ G TGK++I +EL +P+ + + + + ++
Sbjct: 25 KGLRAPITLVLGLRRTGKSSIIKIGINELN--LPYIYLDLRKFEERNYISYKDFLLELQK 82
Query: 65 AIGLRIKESKEVYE 78
I +K + +
Sbjct: 83 EINKLVKRLPSLLK 96
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.053
Identities = 13/68 (19%), Positives = 24/68 (35%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRIK 71
IL+ G PG GKT + ++ + G K + E + E +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 66
Query: 72 ESKEVYEG 79
+++ G
Sbjct: 67 DNQMREGG 74
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 32.3 bits (72), Expect = 0.063
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLME 60
+ + + G +GK+ + ++ G E ++ E M+
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQ 56
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.3 bits (72), Expect = 0.067
Identities = 14/72 (19%), Positives = 24/72 (33%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLME 60
+ G + + G G GKT +++A+ L C + + + K
Sbjct: 11 VGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP 70
Query: 61 NFRRAIGLRIKE 72
R RI E
Sbjct: 71 EDREENVRRIAE 82
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 31.6 bits (70), Expect = 0.073
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42
+ IL G PG+GK+ A +
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 32.4 bits (73), Expect = 0.077
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 24/143 (16%)
Query: 244 VLFIDEVHMLDLETFMPHLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGI 303
V IDEVHML +F L + LE + P +
Sbjct: 118 VYLIDEVHML-------SRHSFNALLKTLEEPPEHVKFLLATT------------DPQKL 158
Query: 304 PLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLL 363
P+ +L R L + + + ++ N E + AL L+ +LR + L
Sbjct: 159 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA-AEGSLRDALSLT 217
Query: 364 TPAALTAKTNGRTAISKQDILEV 386
A +G +S Q + +
Sbjct: 218 DQAIA----SGDGQVSTQAVSAM 236
Score = 30.9 bits (69), Expect = 0.23
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVP 38
+ ++ A L +G G GKT+IA ++ L +
Sbjct: 27 GLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETG 63
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 32.0 bits (71), Expect = 0.079
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKV 37
R I + GP G GK+ I ++ +L +
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 30
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 31.9 bits (71), Expect = 0.081
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 10 RAILMAGPPGTGKTAIALAMSHEL 33
R + + GPPG GKT + S L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 32.2 bits (72), Expect = 0.090
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 8 AGRAILMAGPPGTGKTAIALAMSHEL 33
+L+ G GTGK+ A++ L
Sbjct: 27 GIGGVLVFGDRGTGKSTAVRALAALL 52
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 32.1 bits (72), Expect = 0.11
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42
++ + ILM GP G GKT IA ++
Sbjct: 43 LRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 82
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 31.6 bits (70), Expect = 0.11
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSE--IKKTEVL 58
+KS + +L GPPGTGKT+ LA++ EL + S E I
Sbjct: 27 TLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 84
Query: 59 MENFRR 64
++NF R
Sbjct: 85 VKNFAR 90
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.9 bits (71), Expect = 0.12
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSE 51
GR+ L++G GTGKT ++ + + + + + +
Sbjct: 26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQ 68
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 31.8 bits (72), Expect = 0.12
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKV---------PFCPMVGSEVF-SSEIKKTEVLM 59
I + GP TGKT IA A++H + PF V V E K T ++
Sbjct: 105 NTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVV 164
Query: 60 ENFRRAIG 67
E+ + +G
Sbjct: 165 ESAKAILG 172
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 31.1 bits (69), Expect = 0.14
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 5 KKMAGRAILMAGPPGTGKTAIALAMSHELG 34
++ G IL+ G PGTGKT++A ++ EL
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELD 30
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.8 bits (68), Expect = 0.14
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43
G ++ PG GKT L + +V
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV 41
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.5 bits (70), Expect = 0.15
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 9 GRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGS 45
G I++ G GK+ + + G + +
Sbjct: 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 30.7 bits (69), Expect = 0.17
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 9 GRAILMAGPPGTGKTAIALAM 29
G +L+ G G GK+ AL +
Sbjct: 15 GVGVLLTGRSGIGKSECALDL 35
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 30.7 bits (69), Expect = 0.17
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 9 GRAILMAGPPGTGKTAIALAM 29
G +L+ G G GK+ AL +
Sbjct: 15 GVGVLITGDSGIGKSETALEL 35
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 30.6 bits (69), Expect = 0.18
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 9 GRAILMAGPPGTGKTAIALAM 29
G +L+ G G GK+ AL +
Sbjct: 14 GLGVLITGDSGVGKSETALEL 34
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.6 bits (69), Expect = 0.23
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 12/69 (17%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKV----------PFCPMVGSEV--FSSEIKKTEV 57
++ GP TGK+ ++ H + V P+ ++V
Sbjct: 54 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWT 113
Query: 58 LMENFRRAI 66
+ + R
Sbjct: 114 YFDTYMRNA 122
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 30.7 bits (68), Expect = 0.27
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 1 MIKSKKMAGR---AILMAGPPGTGKTAIALAMSHELGNKVPFC 40
+++ KM G +L+AGPPG GKT +A ++ EL +
Sbjct: 24 ALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 66
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 30.3 bits (67), Expect = 0.28
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELG 34
I M G G G T + ++ LG
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALG 27
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 30.6 bits (68), Expect = 0.28
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 3 KSKKMAGRAILMAGPPGTGKTAIALAMSHELGNK 36
+ + G I + G +GK+ +A+ + H+L
Sbjct: 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRD 51
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 30.3 bits (67), Expect = 0.29
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENF 62
+ +++ G PG G T + L + MV E+ K E L+ +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDR 54
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 30.3 bits (67), Expect = 0.32
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELG 34
M KSK + + G PG+GK + + G
Sbjct: 1 MEKSKP---NVVFVLGGPGSGKGTQCANIVRDFG 31
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.35
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFC 40
R ++++GP G GK+ + + E + F
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFS 31
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 117
Score = 29.1 bits (65), Expect = 0.35
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 265 FTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 324
L + LE+ P+V + GR ++++ I + RL
Sbjct: 23 LDALRKFLETFDGPVVFSVESEGR--REALGELLARIKIAPQRIMRL------DEASDRG 74
Query: 325 EAIIKLRANTEGHVLDDEALVTLSE 349
++ A G V L + E
Sbjct: 75 RYLMIGAA-EHGFVDTVRNLALICE 98
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 30.0 bits (66), Expect = 0.36
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 8 AGRAILMAGPPGTGKTAIALAMSHELG 34
A +A+L+ G PG+GK+ I ++ LG
Sbjct: 1 APKAVLV-GLPGSGKSTIGRRLAKALG 26
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.1 bits (66), Expect = 0.37
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 2 IKSKKMAGRAIL-MAGPPGTGKTAIALAMSHELGNKVPFC 40
I + K AGR +L + G +GKT +A +S L +
Sbjct: 14 ILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.9 bits (66), Expect = 0.58
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 9 GRAILMAGPPGTGKTAIAL 27
R +M PG GKT L
Sbjct: 9 KRLTIMDLHPGAGKTKRYL 27
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 29.4 bits (64), Expect = 0.64
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 5 KKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43
K L+ P G GKT IA+ ++ K ++
Sbjct: 19 AKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLM 57
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
thermophilus [TaxId: 274]}
Length = 105
Score = 28.3 bits (63), Expect = 0.64
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 204 SMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGI 237
+ L+ + T KE+ V+ I
Sbjct: 10 NQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAK 43
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.1 bits (64), Expect = 0.66
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFC 40
R I+++GP GTGK+ + + E + F
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 28.7 bits (63), Expect = 0.87
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELG 34
+ I+ G G+GK+ +A A++ +L
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLD 25
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.8 bits (63), Expect = 0.93
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 2 IKSKKMAGRAILMAGPPGTGKTAIALAMSHELG 34
++ K + I + G PG+GK + + G
Sbjct: 1 MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 28.4 bits (62), Expect = 0.99
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 9 GRAILMAGPPGTGKTAIALAMSHELGN 35
GR ++++GP GK+ + + + N
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 12 ILMAGPPGTGKTAIALAMSHEL---GNKVPFCPM 42
I++ G GTGK A +++ G KV
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA 48
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 28.7 bits (64), Expect = 1.1
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 1 MIKSKKMAGRA------ILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42
M + + + +L+ G G GK +A + H+L ++ +
Sbjct: 9 MKEILEKIKKISCAECPVLITGESGVGKEVVARLI-HKLSDRSKEPFV 55
Score = 26.8 bits (59), Expect = 4.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 243 GVLFIDEVHMLDLET---FMPHLE--TFTYLHRALESAIAPIVIFATNR 286
G LF+DE+ L LE + +E F L E + ++ ATNR
Sbjct: 96 GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 144
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.5 bits (62), Expect = 1.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
I + GP G GK + AM+ L
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQ 28
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.0 bits (61), Expect = 1.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
+++ GPPG GK A +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFH 27
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 27.5 bits (60), Expect = 1.5
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41
+ + P G+GK+ A G KV
Sbjct: 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN 40
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.0 bits (61), Expect = 1.5
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 10 RAILMAGPPGTGKTAIALAMSHELG 34
RA+L+ GPPG GK A ++
Sbjct: 5 RAVLL-GPPGAGKGTQAPKLAKNFC 28
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 27.9 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
+L+ GPPG GK A+ ++ +LG
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLG 25
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 27.9 bits (61), Expect = 1.6
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
++++G P +GK + +
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQ 28
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.0 bits (61), Expect = 1.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
+++ G PG GK A + G
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYG 25
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.0 bits (61), Expect = 1.8
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
I + G PG GK + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYS 33
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.3 bits (61), Expect = 1.9
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 16 GPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLRI 70
G G+GK+++ A+ L + + E + T + + + RI
Sbjct: 30 GQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRI 84
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.6 bits (60), Expect = 2.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNK 36
+ A GTGKT + + L +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCAR 29
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.5 bits (60), Expect = 2.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
I++ G PG GK A + + G
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYG 25
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.7 bits (60), Expect = 2.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNK 36
++ G PG GK+ + + L N+
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQ 28
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 27.9 bits (61), Expect = 2.3
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCP 41
+ + + + + G G+GK+ IA + +
Sbjct: 36 LDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY 76
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 27.6 bits (60), Expect = 2.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
+ + G PG GK + + G
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYG 26
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.7 bits (60), Expect = 2.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 10 RAILMAGPPGTGKTAIALAMSHE 32
RA+L G +GKT + + +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTG 23
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.2 bits (59), Expect = 2.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
I++ G P GK A + + G
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYG 25
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 27.5 bits (60), Expect = 2.5
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 4 SKKMAGRAILMAGPPGTGKTAIALAMSHELG 34
++ + RA +M G PG+GK ++ ++
Sbjct: 4 ARLL--RAAIM-GAPGSGKGTVSSRITKHFE 31
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 2.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 9 GRAILMAGPPGTGKT 23
GR +L+ G G GKT
Sbjct: 6 GRVVLVVGVNGVGKT 20
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPMVG 44
M K+ L A G GKT +A+ + + P +
Sbjct: 24 MRFMNKLGFGICL-ADDMGLGKTLQTIAVFSDAKKENELTPSLV 66
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.4 bits (60), Expect = 2.7
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 12 ILMAGPPGTGKTAIALAMSHEL---GNKVPFCPMV 43
I++ G GTGKT ++ G V
Sbjct: 14 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 48
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 2.9
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMV 43
I +GP G+GK+ ++ + + L K +
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSI 61
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 27.0 bits (59), Expect = 3.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNK 36
+ G G+GKT A ++ K
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGK 37
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.2 bits (59), Expect = 3.4
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFS 49
I ++G +GK+++ + LG + S
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILS 42
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 27.3 bits (60), Expect = 3.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 12 ILMAGPPGTGKTAIA 26
++ G PG GKTAI
Sbjct: 46 PVLIGEPGVGKTAIV 60
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 26.9 bits (58), Expect = 3.8
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
I + GP +GK+ +A ++ + G
Sbjct: 6 IAIDGPASSGKSTVAKIIAKDFG 28
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.6 bits (58), Expect = 4.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 12 ILMAGPPGTGKT 23
ILM G G GKT
Sbjct: 12 ILMVGVNGVGKT 23
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 26.8 bits (58), Expect = 4.8
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 3 KSKKMAGRAIL--MAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTE 56
GRAI + G PG GK+ A+ L ++ + S+ +
Sbjct: 43 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 98
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.8 bits (59), Expect = 5.0
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 12 ILMAGPPGTGKTAIALAMSHELG 34
I + G G G + +
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFR 29
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 25.7 bits (56), Expect = 5.1
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 204 SMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGI 237
+++ L++ ++ E E+ K ID G
Sbjct: 4 NLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGK 37
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 25.6 bits (56), Expect = 5.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 207 GQLIKSKKTEITDKLRKEINKVVNKYIDQGIAE 239
G +I K ++ +KLRK + + IAE
Sbjct: 73 GIVIGKKGEDV-EKLRKVVADIAGVPAQINIAE 104
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440
{Enterococcus faecalis [TaxId: 1351]}
Length = 143
Score = 25.9 bits (56), Expect = 5.4
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 66 IGLRIKESKEVYEGEVTELTPVETENPMGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYES 125
GL+ K E++EG++ + + P + H I + L L
Sbjct: 69 TGLKDKNGVEIFEGDI-----LVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNI 123
Query: 126 LQKEKVEV 133
L ++ V
Sbjct: 124 LYRDGYLV 131
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
{Deinococcus radiodurans [TaxId: 1299]}
Length = 113
Score = 25.6 bits (56), Expect = 5.8
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 204 SMVGQLIKSKKTEITDKLRKEINKVVNKYI 233
+ L++ + + T KE+ V + I
Sbjct: 21 AQATALLREGRIQTTLTKAKELRPFVEQLI 50
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.2 bits (56), Expect = 6.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 12 ILMAGPPGTGKTAIALAMSHE 32
+LM G GKT I + E
Sbjct: 5 LLMLGLDNAGKTTILKKFNGE 25
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 26.1 bits (56), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 10 RAILMAGPPGTGKTAIALAMSHEL---GNKV 37
+ G G GKT+I+ A + L G +V
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRV 39
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.7 bits (55), Expect = 7.7
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 12 ILMAGPPGTGKTAIALAMSHELGNKVPFCPMVGSEVFSSEIKKTEVLMENFRRAIGLR 69
IL+ G G GKT I + G V P +G V + K ++ + + +R
Sbjct: 20 ILILGLDGAGKTTILYRLQI--GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 75
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 26.1 bits (56), Expect = 7.9
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1 MIKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFCPM 42
+ K M ++++G PG GKT ++HEL + +
Sbjct: 30 IAKDGNMP--HMIISGMPGIGKTTSVHCLAHELLGRSYADGV 69
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 24.8 bits (54), Expect = 8.1
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 130 KVEVGDVIYIEANSGAVKRQGRSDTFAAEFDLEAEEYVPLPKGDVHKKKEVIQDV 184
+V GDVI +E+ G G A F + G + EV++
Sbjct: 9 RVSEGDVIRVESLQGEA---GDKVELKALFVGGEQTVFGEDAGKYTVQAEVVEHG 60
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 25.2 bits (55), Expect = 8.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 207 GQLIKSKKTEITDKLRKEINKVVNKYIDQGIAE 239
G +I I LR+E+ K+ K + + E
Sbjct: 73 GVVIGRGGERI-RVLREELAKLTGKNVALNVQE 104
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.4 bits (55), Expect = 8.8
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 2 IKSKKMAGRAILMAGPPGTGKTAIALAMSHELGNKVPFC 40
+K + + G G GKT + M +G++
Sbjct: 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVK 64
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 25.2 bits (55), Expect = 9.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 204 SMVGQLIKSKKTEITDKLRKEINKVVNKYIDQGI 237
+M G L++ + + T KE+ +VV I
Sbjct: 23 NMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAK 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.369
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,425,856
Number of extensions: 67590
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 135
Length of query: 409
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,213,086
Effective search space: 390613692
Effective search space used: 390613692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.6 bits)