BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2779
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
 pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
 pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
          Length = 456

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 41/47 (87%)

Query: 1  MKIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAARE 47
          MKIEEVKST KTQRI+SHSHVKGLGL E+G A + A+GLVGQ+ ARE
Sbjct: 1  MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENARE 47


>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
          Truncated Domains Ii
 pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
          Truncated Domains Ii
 pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
          Truncated Domains Ii
          Length = 367

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 40/46 (86%)

Query: 2  KIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAARE 47
          KIEEVKST KTQRI+SHSHVKGLGL E+G A + A+GLVGQ+ ARE
Sbjct: 16 KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENARE 61


>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
 pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
          Length = 368

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 2  KIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAV 52
          K+ E++   + +RI +HSH++GLGL +  E  + + G+VGQ AAR  +  V
Sbjct: 9  KVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVV 59


>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
          Truncated Domains Ii
 pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
          Truncated Domains Ii
 pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
          Truncated Domains Ii
          Length = 378

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 2  KIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAV 52
          K+ E++   + +RI +HSH++GLGL +  E  + + G VGQ AAR  +  V
Sbjct: 24 KVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGXVGQLAARRAAGVV 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.127    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,051,094
Number of Sequences: 62578
Number of extensions: 97823
Number of successful extensions: 124
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 9
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)