Query psy2779
Match_columns 101
No_of_seqs 106 out of 291
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 16:39:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1942|consensus 100.0 6.8E-30 1.5E-34 212.6 2.3 83 1-91 2-98 (456)
2 COG1224 TIP49 DNA helicase TIP 99.9 2.4E-28 5.1E-33 204.9 3.2 74 10-91 12-99 (450)
3 PF06068 TIP49: TIP49 C-termin 99.9 1.6E-28 3.4E-33 204.3 1.0 70 14-91 1-84 (398)
4 KOG2680|consensus 99.9 3.5E-26 7.5E-31 190.7 2.7 81 3-91 6-100 (454)
5 COG1223 Predicted ATPase (AAA+ 97.1 0.00012 2.6E-09 61.3 0.3 44 35-85 119-165 (368)
6 COG0606 Predicted ATPase with 96.6 0.00091 2E-08 58.1 1.4 36 36-86 178-213 (490)
7 PF01078 Mg_chelatase: Magnesi 96.4 0.00095 2.1E-08 51.8 0.5 34 37-85 3-36 (206)
8 TIGR00635 ruvB Holliday juncti 96.4 0.00072 1.6E-08 51.3 -0.4 45 36-88 3-47 (305)
9 PRK05342 clpX ATP-dependent pr 96.0 0.0015 3.3E-08 54.3 -0.2 45 38-85 72-122 (412)
10 PRK00080 ruvB Holliday junctio 95.9 0.002 4.4E-08 50.3 0.1 44 35-86 23-66 (328)
11 TIGR02881 spore_V_K stage V sp 95.9 0.001 2.2E-08 50.4 -1.5 53 37-89 6-60 (261)
12 PF05496 RuvB_N: Holliday junc 95.9 0.0019 4.2E-08 51.4 -0.1 48 30-86 18-65 (233)
13 PRK13342 recombination factor 95.6 0.0032 6.9E-08 51.1 0.0 41 36-86 11-51 (413)
14 TIGR00390 hslU ATP-dependent p 95.6 0.004 8.8E-08 53.4 0.6 48 36-86 11-62 (441)
15 PF13191 AAA_16: AAA ATPase do 95.5 0.0039 8.4E-08 42.7 0.0 41 39-89 2-42 (185)
16 TIGR00382 clpX endopeptidase C 95.3 0.0072 1.6E-07 50.8 1.1 49 36-85 76-130 (413)
17 PRK06893 DNA replication initi 95.3 0.009 1.9E-07 44.8 1.4 51 26-87 5-55 (229)
18 cd00009 AAA The AAA+ (ATPases 95.2 0.009 1.9E-07 37.7 1.1 26 70-95 18-43 (151)
19 PF13086 AAA_11: AAA domain; P 95.2 0.0053 1.1E-07 42.8 0.1 13 73-85 19-31 (236)
20 COG0467 RAD55 RecA-superfamily 95.2 0.0065 1.4E-07 45.8 0.4 25 65-89 17-41 (260)
21 CHL00081 chlI Mg-protoporyphyr 94.9 0.01 2.2E-07 49.0 0.9 51 28-91 8-58 (350)
22 PRK13407 bchI magnesium chelat 94.9 0.011 2.4E-07 48.2 1.0 37 36-85 7-43 (334)
23 PRK14961 DNA polymerase III su 94.7 0.011 2.4E-07 47.3 0.6 39 36-86 15-53 (363)
24 PF13245 AAA_19: Part of AAA d 94.7 0.015 3.3E-07 37.8 1.1 16 70-85 9-24 (76)
25 PRK14962 DNA polymerase III su 94.6 0.0097 2.1E-07 50.4 -0.0 40 36-87 13-52 (472)
26 PRK14955 DNA polymerase III su 94.5 0.011 2.4E-07 48.0 0.3 39 36-86 15-53 (397)
27 smart00763 AAA_PrkA PrkA AAA d 94.4 0.014 3E-07 48.8 0.6 42 38-87 52-94 (361)
28 PRK12402 replication factor C 94.3 0.018 3.9E-07 43.7 1.0 38 36-86 14-51 (337)
29 PTZ00454 26S protease regulato 94.3 0.012 2.5E-07 48.8 -0.1 67 19-87 129-195 (398)
30 PRK14956 DNA polymerase III su 94.2 0.018 4E-07 49.7 0.8 39 36-86 17-55 (484)
31 TIGR02880 cbbX_cfxQ probable R 94.0 0.0095 2.1E-07 46.6 -1.1 52 37-88 22-75 (284)
32 PRK04195 replication factor C 93.8 0.019 4.2E-07 47.6 0.4 46 31-86 9-54 (482)
33 TIGR02237 recomb_radB DNA repa 93.8 0.03 6.5E-07 40.3 1.3 23 66-88 7-29 (209)
34 PRK05201 hslU ATP-dependent pr 93.8 0.019 4.1E-07 49.5 0.2 50 36-86 14-65 (443)
35 PF03215 Rad17: Rad17 cell cyc 93.8 0.025 5.4E-07 48.8 0.9 17 70-86 44-60 (519)
36 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.022 4.7E-07 42.8 0.3 25 65-89 15-39 (237)
37 PF13654 AAA_32: AAA domain; P 93.7 0.019 4.1E-07 49.3 0.0 47 36-94 7-53 (509)
38 PLN03025 replication factor C 93.6 0.027 5.8E-07 44.0 0.7 37 36-85 12-48 (319)
39 TIGR01241 FtsH_fam ATP-depende 93.5 0.02 4.4E-07 47.6 -0.2 51 32-85 50-102 (495)
40 TIGR02928 orc1/cdc6 family rep 93.4 0.039 8.5E-07 42.7 1.3 49 31-88 9-57 (365)
41 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.041 8.9E-07 42.3 1.4 28 65-92 30-57 (259)
42 PF13401 AAA_22: AAA domain; P 93.4 0.02 4.3E-07 37.5 -0.3 18 70-87 3-20 (131)
43 COG1219 ClpX ATP-dependent pro 93.3 0.03 6.5E-07 48.0 0.7 46 37-85 61-111 (408)
44 cd01394 radB RadB. The archaea 93.2 0.044 9.6E-07 39.8 1.3 25 66-90 14-38 (218)
45 TIGR00764 lon_rel lon-related 93.2 0.032 7E-07 48.5 0.7 41 32-87 13-53 (608)
46 KOG0734|consensus 93.2 0.036 7.8E-07 50.3 1.0 57 22-85 285-351 (752)
47 TIGR00763 lon ATP-dependent pr 93.1 0.029 6.2E-07 49.6 0.3 43 37-86 320-362 (775)
48 PHA02544 44 clamp loader, smal 93.1 0.031 6.6E-07 42.7 0.3 41 35-87 19-59 (316)
49 KOG0744|consensus 93.0 0.049 1.1E-06 46.8 1.5 19 68-86 174-192 (423)
50 KOG1970|consensus 92.9 0.055 1.2E-06 48.6 1.8 21 66-86 105-125 (634)
51 TIGR02397 dnaX_nterm DNA polym 92.9 0.035 7.6E-07 42.7 0.4 40 36-87 13-52 (355)
52 PRK14949 DNA polymerase III su 92.8 0.038 8.3E-07 51.4 0.6 39 36-86 15-53 (944)
53 PF06745 KaiC: KaiC; InterPro 92.7 0.038 8.3E-07 40.4 0.4 23 66-88 14-36 (226)
54 TIGR02442 Cob-chelat-sub cobal 92.7 0.046 1E-06 47.4 0.9 37 37-86 4-40 (633)
55 COG2256 MGS1 ATPase related to 92.7 0.036 7.9E-07 47.9 0.3 52 27-89 15-66 (436)
56 TIGR00368 Mg chelatase-related 92.7 0.061 1.3E-06 46.0 1.6 38 36-88 191-228 (499)
57 TIGR03881 KaiC_arch_4 KaiC dom 92.6 0.041 8.9E-07 40.2 0.4 25 66-90 15-39 (229)
58 PRK13531 regulatory ATPase Rav 92.6 0.041 8.9E-07 47.9 0.4 40 34-88 17-56 (498)
59 COG0465 HflB ATP-dependent Zn 92.5 0.045 9.8E-07 48.5 0.6 53 37-97 150-221 (596)
60 TIGR02640 gas_vesic_GvpN gas v 92.5 0.053 1.1E-06 41.6 0.9 16 70-85 20-35 (262)
61 PRK14969 DNA polymerase III su 92.5 0.044 9.6E-07 46.8 0.5 38 36-85 15-52 (527)
62 PRK05973 replicative DNA helic 92.4 0.059 1.3E-06 42.2 1.0 25 66-90 59-83 (237)
63 PRK11034 clpA ATP-dependent Cl 92.3 0.05 1.1E-06 48.9 0.7 45 36-86 457-503 (758)
64 PRK14952 DNA polymerase III su 92.1 0.061 1.3E-06 47.1 0.9 38 36-85 12-49 (584)
65 cd00984 DnaB_C DnaB helicase C 92.1 0.072 1.6E-06 38.9 1.1 26 67-92 9-34 (242)
66 CHL00181 cbbX CbbX; Provisiona 92.0 0.034 7.4E-07 43.8 -0.7 19 71-89 59-77 (287)
67 PRK13341 recombination factor 91.9 0.052 1.1E-06 48.5 0.3 52 24-86 16-67 (725)
68 PRK14963 DNA polymerase III su 91.9 0.06 1.3E-06 46.0 0.6 39 36-86 13-51 (504)
69 PRK07940 DNA polymerase III su 91.8 0.063 1.4E-06 44.6 0.6 49 36-87 4-52 (394)
70 PRK14958 DNA polymerase III su 91.8 0.061 1.3E-06 46.0 0.5 39 36-86 15-53 (509)
71 PF06414 Zeta_toxin: Zeta toxi 91.8 0.075 1.6E-06 38.7 0.9 22 71-92 15-36 (199)
72 PRK07994 DNA polymerase III su 91.7 0.059 1.3E-06 47.9 0.4 40 35-86 14-53 (647)
73 PRK08903 DnaA regulatory inact 91.5 0.079 1.7E-06 38.8 0.8 20 70-89 41-60 (227)
74 PRK14950 DNA polymerase III su 91.5 0.068 1.5E-06 45.9 0.5 40 36-87 15-54 (585)
75 PRK08084 DNA replication initi 91.4 0.12 2.6E-06 39.0 1.8 16 71-86 45-60 (235)
76 PRK06067 flagellar accessory p 91.4 0.071 1.5E-06 39.4 0.5 27 66-92 20-46 (234)
77 cd01393 recA_like RecA is a b 91.4 0.13 2.8E-06 37.2 1.9 27 66-92 14-40 (226)
78 KOG0731|consensus 91.3 0.064 1.4E-06 49.0 0.3 59 36-97 310-382 (774)
79 PRK14957 DNA polymerase III su 91.3 0.076 1.6E-06 46.2 0.7 41 35-87 14-54 (546)
80 PRK14737 gmk guanylate kinase; 91.3 0.092 2E-06 38.8 1.0 18 69-86 2-19 (186)
81 PRK14954 DNA polymerase III su 91.2 0.08 1.7E-06 46.7 0.7 39 36-86 15-53 (620)
82 TIGR03880 KaiC_arch_3 KaiC dom 91.2 0.11 2.3E-06 38.1 1.3 23 66-88 11-33 (224)
83 PRK14960 DNA polymerase III su 91.2 0.085 1.8E-06 47.8 0.9 40 35-86 13-52 (702)
84 PF07088 GvpD: GvpD gas vesicl 91.2 0.11 2.3E-06 45.6 1.5 26 70-95 9-34 (484)
85 COG2255 RuvB Holliday junction 91.2 0.068 1.5E-06 44.9 0.3 43 35-88 24-69 (332)
86 cd01123 Rad51_DMC1_radA Rad51_ 91.2 0.11 2.4E-06 37.8 1.3 26 66-91 14-39 (235)
87 PRK04328 hypothetical protein; 91.2 0.11 2.3E-06 39.7 1.3 23 67-89 19-41 (249)
88 PRK06526 transposase; Provisio 91.1 0.094 2E-06 40.9 0.9 17 71-87 98-114 (254)
89 PRK06645 DNA polymerase III su 91.1 0.085 1.8E-06 45.4 0.7 39 36-86 20-58 (507)
90 CHL00195 ycf46 Ycf46; Provisio 91.0 0.064 1.4E-06 45.9 -0.0 56 28-86 219-274 (489)
91 PRK00300 gmk guanylate kinase; 91.0 0.11 2.4E-06 37.1 1.2 23 70-92 4-26 (205)
92 PRK03992 proteasome-activating 91.0 0.1 2.3E-06 42.5 1.1 17 71-87 165-181 (389)
93 PRK05642 DNA replication initi 90.9 0.11 2.4E-06 39.3 1.2 56 24-87 6-61 (234)
94 TIGR03689 pup_AAA proteasome A 90.9 0.053 1.2E-06 46.9 -0.7 50 37-86 182-231 (512)
95 KOG0733|consensus 90.9 0.089 1.9E-06 48.2 0.7 15 71-85 545-559 (802)
96 PRK00131 aroK shikimate kinase 90.8 0.12 2.6E-06 35.1 1.2 17 71-87 4-20 (175)
97 TIGR01243 CDC48 AAA family ATP 90.8 0.074 1.6E-06 46.5 0.1 49 37-86 453-502 (733)
98 TIGR03420 DnaA_homol_Hda DnaA 90.8 0.12 2.6E-06 37.2 1.1 18 71-88 38-55 (226)
99 TIGR02655 circ_KaiC circadian 90.8 0.12 2.5E-06 43.4 1.2 25 66-90 16-40 (484)
100 PF00437 T2SE: Type II/IV secr 90.7 0.075 1.6E-06 40.0 0.1 19 70-88 126-144 (270)
101 PRK07471 DNA polymerase III su 90.6 0.15 3.3E-06 41.8 1.8 40 35-86 17-56 (365)
102 CHL00095 clpC Clp protease ATP 90.6 0.092 2E-06 46.8 0.5 44 36-85 508-553 (821)
103 PRK06647 DNA polymerase III su 90.5 0.1 2.2E-06 45.3 0.7 39 36-86 15-53 (563)
104 PRK05896 DNA polymerase III su 90.5 0.092 2E-06 46.6 0.4 40 36-87 15-54 (605)
105 COG0714 MoxR-like ATPases [Gen 90.4 0.11 2.3E-06 40.8 0.7 35 36-85 23-57 (329)
106 PRK12323 DNA polymerase III su 90.4 0.089 1.9E-06 47.7 0.3 39 36-86 15-53 (700)
107 PRK09361 radB DNA repair and r 90.3 0.15 3.2E-06 37.3 1.3 23 66-88 18-40 (225)
108 PRK00440 rfc replication facto 90.3 0.1 2.3E-06 39.1 0.6 44 30-87 11-54 (319)
109 PRK13765 ATP-dependent proteas 90.3 0.1 2.3E-06 46.2 0.6 40 33-87 27-66 (637)
110 PRK14964 DNA polymerase III su 90.3 0.11 2.4E-06 44.7 0.7 40 35-86 11-50 (491)
111 TIGR01242 26Sp45 26S proteasom 90.3 0.12 2.7E-06 41.0 1.0 62 21-87 108-172 (364)
112 cd01130 VirB11-like_ATPase Typ 90.1 0.14 2.9E-06 37.1 1.0 18 70-87 24-41 (186)
113 TIGR03015 pepcterm_ATPase puta 90.1 0.14 2.9E-06 37.8 1.0 43 33-86 16-58 (269)
114 TIGR02236 recomb_radA DNA repa 90.0 0.16 3.4E-06 39.4 1.3 24 66-89 90-113 (310)
115 PRK05563 DNA polymerase III su 90.0 0.12 2.6E-06 44.5 0.7 40 36-87 15-54 (559)
116 PRK14738 gmk guanylate kinase; 90.0 0.15 3.2E-06 37.7 1.1 19 69-87 11-29 (206)
117 TIGR02030 BchI-ChlI magnesium 89.9 0.18 3.9E-06 41.2 1.6 46 36-95 3-49 (337)
118 PRK09112 DNA polymerase III su 89.9 0.12 2.6E-06 42.1 0.6 40 36-87 22-61 (351)
119 TIGR02639 ClpA ATP-dependent C 89.9 0.1 2.2E-06 45.9 0.2 45 35-85 452-498 (731)
120 COG0464 SpoVK ATPases of the A 89.7 0.12 2.6E-06 42.5 0.5 16 70-85 275-290 (494)
121 PRK04301 radA DNA repair and r 89.5 0.21 4.6E-06 39.2 1.7 24 66-89 97-120 (317)
122 PRK07764 DNA polymerase III su 89.5 0.14 2.9E-06 46.6 0.7 38 36-85 14-51 (824)
123 PRK12377 putative replication 89.4 0.12 2.6E-06 40.4 0.3 35 41-86 82-116 (248)
124 PRK14970 DNA polymerase III su 89.4 0.15 3.3E-06 40.2 0.8 38 36-85 16-53 (367)
125 PRK06305 DNA polymerase III su 89.1 0.15 3.4E-06 42.7 0.7 40 35-86 15-54 (451)
126 PTZ00361 26 proteosome regulat 89.0 0.1 2.2E-06 44.2 -0.5 20 68-87 214-233 (438)
127 PRK14527 adenylate kinase; Pro 89.0 0.19 4.2E-06 36.1 1.1 20 70-89 5-24 (191)
128 TIGR00602 rad24 checkpoint pro 89.0 0.15 3.3E-06 45.3 0.6 47 36-90 83-129 (637)
129 TIGR01420 pilT_fam pilus retra 89.0 0.18 3.9E-06 40.4 1.0 21 70-90 121-141 (343)
130 PRK08691 DNA polymerase III su 89.0 0.16 3.6E-06 45.9 0.8 39 36-86 15-53 (709)
131 PF06309 Torsin: Torsin; Inte 88.9 0.046 1E-06 40.0 -2.2 51 35-94 23-76 (127)
132 KOG0727|consensus 88.9 0.28 6E-06 41.7 2.1 63 19-86 139-204 (408)
133 PLN00020 ribulose bisphosphate 88.8 0.16 3.6E-06 43.7 0.7 17 71-87 148-164 (413)
134 PRK14953 DNA polymerase III su 88.6 0.16 3.4E-06 43.2 0.5 38 36-85 15-52 (486)
135 PRK14951 DNA polymerase III su 88.6 0.14 2.9E-06 45.4 0.0 40 35-86 14-53 (618)
136 PRK06620 hypothetical protein; 88.5 0.19 4.1E-06 37.9 0.8 16 72-87 45-60 (214)
137 TIGR03345 VI_ClpV1 type VI sec 88.4 0.17 3.6E-06 45.9 0.5 47 35-88 564-613 (852)
138 KOG2028|consensus 88.4 0.12 2.7E-06 45.4 -0.3 56 21-87 123-178 (554)
139 CHL00176 ftsH cell division pr 88.2 0.16 3.4E-06 44.9 0.2 45 35-86 181-231 (638)
140 TIGR02903 spore_lon_C ATP-depe 88.1 0.18 3.9E-06 43.9 0.5 41 35-88 152-192 (615)
141 PF12775 AAA_7: P-loop contain 88.0 0.18 4E-06 39.5 0.5 17 69-85 31-47 (272)
142 COG1222 RPT1 ATP-dependent 26S 88.0 0.2 4.4E-06 43.1 0.7 61 21-85 137-199 (406)
143 PRK00411 cdc6 cell division co 87.9 0.24 5.3E-06 38.8 1.1 47 32-88 25-72 (394)
144 KOG0730|consensus 87.9 0.22 4.7E-06 45.3 0.9 42 41-85 438-482 (693)
145 TIGR01650 PD_CobS cobaltochela 87.8 0.19 4E-06 41.6 0.4 17 69-85 62-78 (327)
146 PRK08533 flagellar accessory p 87.8 0.29 6.3E-06 37.1 1.4 21 67-87 20-40 (230)
147 PRK10865 protein disaggregatio 87.7 0.18 3.9E-06 45.6 0.2 46 36-88 567-615 (857)
148 KOG0733|consensus 87.6 0.22 4.8E-06 45.8 0.7 15 71-85 223-237 (802)
149 PRK09183 transposase/IS protei 87.6 0.26 5.7E-06 38.1 1.1 19 70-88 101-119 (259)
150 PRK07133 DNA polymerase III su 87.4 0.24 5.1E-06 44.9 0.8 39 36-86 17-55 (725)
151 PF00270 DEAD: DEAD/DEAH box h 87.4 0.23 5E-06 33.4 0.6 16 70-85 13-28 (169)
152 TIGR02524 dot_icm_DotB Dot/Icm 87.4 0.25 5.5E-06 40.5 0.9 18 70-87 133-150 (358)
153 PRK05541 adenylylsulfate kinas 87.3 0.28 6E-06 34.6 1.0 19 70-88 6-24 (176)
154 cd01129 PulE-GspE PulE/GspE Th 87.3 0.3 6.5E-06 38.0 1.2 23 70-92 79-101 (264)
155 TIGR02239 recomb_RAD51 DNA rep 87.2 0.3 6.6E-06 39.1 1.3 25 66-90 91-115 (316)
156 PF13481 AAA_25: AAA domain; P 87.2 0.047 1E-06 38.3 -3.0 28 70-97 31-58 (193)
157 PRK09111 DNA polymerase III su 87.1 0.25 5.4E-06 43.4 0.7 46 28-86 16-61 (598)
158 cd01122 GP4d_helicase GP4d_hel 87.1 0.27 5.9E-06 36.7 0.9 27 66-92 25-51 (271)
159 KOG0991|consensus 87.0 0.3 6.5E-06 40.9 1.2 37 37-86 27-63 (333)
160 COG0470 HolB ATPase involved i 87.0 0.24 5.1E-06 37.1 0.5 15 73-87 26-40 (325)
161 cd02019 NK Nucleoside/nucleoti 86.8 0.26 5.7E-06 30.7 0.5 15 74-88 2-16 (69)
162 PRK07003 DNA polymerase III su 86.6 0.26 5.6E-06 45.6 0.6 39 36-86 15-53 (830)
163 PF00005 ABC_tran: ABC transpo 86.6 0.26 5.5E-06 32.8 0.4 20 68-87 8-27 (137)
164 PRK14965 DNA polymerase III su 86.4 0.27 5.8E-06 42.5 0.6 39 36-86 15-53 (576)
165 TIGR02655 circ_KaiC circadian 86.4 0.35 7.7E-06 40.5 1.3 26 65-90 257-282 (484)
166 PRK00889 adenylylsulfate kinas 86.4 0.32 7E-06 34.2 0.9 19 70-88 3-21 (175)
167 TIGR03346 chaperone_ClpB ATP-d 86.3 0.23 5E-06 44.6 0.1 43 36-85 564-609 (852)
168 PRK00149 dnaA chromosomal repl 86.3 0.26 5.7E-06 40.5 0.5 51 29-87 114-164 (450)
169 PRK09302 circadian clock prote 86.2 0.35 7.5E-06 40.3 1.2 23 67-89 27-49 (509)
170 TIGR02012 tigrfam_recA protein 86.1 0.35 7.6E-06 39.6 1.1 24 66-89 50-73 (321)
171 PRK08181 transposase; Validate 86.0 0.37 8E-06 38.1 1.1 16 71-86 106-121 (269)
172 TIGR02238 recomb_DMC1 meiotic 85.9 0.54 1.2E-05 37.8 2.1 23 66-88 91-113 (313)
173 PRK09862 putative ATP-dependen 85.8 0.52 1.1E-05 40.9 2.0 36 36-86 190-225 (506)
174 PRK05480 uridine/cytidine kina 85.8 0.35 7.6E-06 35.1 0.9 22 70-91 5-26 (209)
175 PF13604 AAA_30: AAA domain; P 85.8 0.27 5.9E-06 36.2 0.3 17 71-87 18-34 (196)
176 PF04851 ResIII: Type III rest 85.7 0.28 6E-06 33.1 0.3 18 71-88 25-42 (184)
177 TIGR02782 TrbB_P P-type conjug 85.7 0.38 8.3E-06 38.2 1.1 23 70-92 131-153 (299)
178 PLN03186 DNA repair protein RA 85.7 0.41 9E-06 39.2 1.3 24 66-89 118-141 (342)
179 PRK08356 hypothetical protein; 85.7 0.35 7.5E-06 35.1 0.8 15 72-86 6-20 (195)
180 TIGR00235 udk uridine kinase. 85.6 0.33 7.1E-06 35.5 0.6 19 70-88 5-23 (207)
181 KOG0738|consensus 85.6 0.34 7.5E-06 42.5 0.9 40 40-85 215-259 (491)
182 PLN02200 adenylate kinase fami 85.4 0.38 8.3E-06 36.8 0.9 18 71-88 43-60 (234)
183 PLN03187 meiotic recombination 85.3 0.53 1.2E-05 38.7 1.8 23 66-88 121-143 (344)
184 TIGR02788 VirB11 P-type DNA tr 85.0 0.25 5.4E-06 38.9 -0.2 23 68-90 141-163 (308)
185 TIGR02525 plasmid_TraJ plasmid 85.0 0.43 9.4E-06 39.6 1.1 23 70-92 148-170 (372)
186 cd03272 ABC_SMC3_euk Eukaryoti 84.9 0.6 1.3E-05 34.3 1.8 22 69-90 21-42 (243)
187 cd03283 ABC_MutS-like MutS-lik 84.8 0.48 1E-05 35.2 1.2 19 70-88 24-42 (199)
188 cd00983 recA RecA is a bacter 84.6 0.48 1.1E-05 38.9 1.2 25 66-90 50-74 (325)
189 PHA00729 NTP-binding motif con 84.5 0.38 8.3E-06 37.8 0.6 15 73-87 19-33 (226)
190 COG2804 PulE Type II secretory 84.3 0.44 9.5E-06 41.8 0.9 16 70-85 257-272 (500)
191 TIGR02902 spore_lonB ATP-depen 84.3 0.5 1.1E-05 40.4 1.2 36 37-85 65-100 (531)
192 PRK10436 hypothetical protein; 84.3 0.53 1.2E-05 40.1 1.4 17 70-86 217-233 (462)
193 PRK10787 DNA-binding ATP-depen 84.2 0.39 8.4E-06 43.3 0.6 44 38-88 323-366 (784)
194 PRK13851 type IV secretion sys 84.2 0.24 5.2E-06 40.6 -0.7 25 70-94 161-185 (344)
195 PRK09302 circadian clock prote 84.0 0.37 8E-06 40.2 0.3 25 66-90 268-292 (509)
196 PRK05564 DNA polymerase III su 84.0 0.44 9.5E-06 37.1 0.7 40 37-88 4-43 (313)
197 smart00487 DEXDc DEAD-like hel 84.0 0.6 1.3E-05 30.8 1.3 15 72-86 25-39 (201)
198 PRK13833 conjugal transfer pro 83.9 0.47 1E-05 38.7 0.9 19 71-89 144-162 (323)
199 TIGR01243 CDC48 AAA family ATP 83.9 0.55 1.2E-05 41.1 1.4 52 35-87 176-228 (733)
200 PRK14948 DNA polymerase III su 83.8 0.49 1.1E-05 41.6 1.1 39 36-86 15-53 (620)
201 PRK08727 hypothetical protein; 83.7 0.44 9.5E-06 35.9 0.6 16 72-87 42-57 (233)
202 PLN02165 adenylate isopentenyl 83.7 0.54 1.2E-05 39.0 1.2 16 71-86 43-58 (334)
203 PF14532 Sigma54_activ_2: Sigm 83.6 0.5 1.1E-05 32.4 0.8 15 71-85 21-35 (138)
204 cd03243 ABC_MutS_homologs The 83.6 0.82 1.8E-05 33.2 2.0 24 68-91 26-49 (202)
205 cd03238 ABC_UvrA The excision 83.5 0.68 1.5E-05 34.2 1.5 25 67-91 17-41 (176)
206 PRK11823 DNA repair protein Ra 83.4 0.54 1.2E-05 39.4 1.1 27 66-92 75-101 (446)
207 COG3839 MalK ABC-type sugar tr 83.3 0.6 1.3E-05 38.8 1.3 24 67-90 25-48 (338)
208 TIGR02533 type_II_gspE general 83.3 0.58 1.2E-05 39.9 1.2 19 70-88 241-259 (486)
209 PRK07667 uridine kinase; Provi 83.2 0.35 7.5E-06 35.3 -0.1 19 71-89 17-35 (193)
210 TIGR03499 FlhF flagellar biosy 83.2 0.59 1.3E-05 36.6 1.1 20 70-89 193-212 (282)
211 PRK14959 DNA polymerase III su 83.1 0.36 7.8E-06 43.0 -0.1 39 36-86 15-53 (624)
212 PF01695 IstB_IS21: IstB-like 83.1 0.38 8.2E-06 35.3 0.1 17 71-87 47-63 (178)
213 PF13476 AAA_23: AAA domain; P 83.1 0.66 1.4E-05 31.8 1.2 18 69-86 17-34 (202)
214 KOG0989|consensus 83.1 0.56 1.2E-05 39.7 1.0 38 36-86 35-72 (346)
215 TIGR00665 DnaB replicative DNA 83.0 0.64 1.4E-05 37.7 1.3 26 67-92 191-216 (434)
216 PRK13900 type IV secretion sys 82.9 0.25 5.4E-06 40.1 -1.1 24 70-93 159-182 (332)
217 TIGR02538 type_IV_pilB type IV 82.8 0.6 1.3E-05 40.2 1.2 18 70-87 315-332 (564)
218 PRK15455 PrkA family serine pr 82.7 0.75 1.6E-05 41.6 1.7 44 37-89 76-121 (644)
219 PRK14722 flhF flagellar biosyn 82.7 0.63 1.4E-05 38.9 1.2 22 68-89 134-155 (374)
220 KOG0741|consensus 82.4 0.67 1.5E-05 42.3 1.4 48 37-85 196-270 (744)
221 PRK08451 DNA polymerase III su 82.4 0.5 1.1E-05 41.2 0.5 40 35-86 12-51 (535)
222 PRK09354 recA recombinase A; P 82.2 0.68 1.5E-05 38.5 1.2 27 66-92 55-81 (349)
223 PTZ00035 Rad51 protein; Provis 82.2 0.86 1.9E-05 37.0 1.8 22 67-88 114-135 (337)
224 KOG0739|consensus 81.9 0.98 2.1E-05 39.0 2.1 43 40-85 136-180 (439)
225 PRK13894 conjugal transfer ATP 81.8 0.65 1.4E-05 37.5 1.0 24 70-93 147-170 (319)
226 TIGR00376 DNA helicase, putati 81.7 0.64 1.4E-05 40.8 0.9 22 71-92 173-194 (637)
227 KOG0735|consensus 81.6 0.34 7.3E-06 45.3 -0.8 25 71-95 701-725 (952)
228 PRK09087 hypothetical protein; 81.5 0.76 1.6E-05 34.9 1.2 50 25-86 9-59 (226)
229 PRK10875 recD exonuclease V su 81.4 0.6 1.3E-05 41.2 0.7 26 70-95 166-191 (615)
230 cd03280 ABC_MutS2 MutS2 homolo 81.4 0.81 1.8E-05 33.3 1.3 19 72-90 29-47 (200)
231 PRK14088 dnaA chromosomal repl 81.3 0.54 1.2E-05 39.2 0.3 47 30-86 98-145 (440)
232 PRK11331 5-methylcytosine-spec 81.3 0.68 1.5E-05 40.1 0.9 16 70-85 193-208 (459)
233 PHA02244 ATPase-like protein 81.3 0.67 1.5E-05 39.4 0.9 16 71-86 119-134 (383)
234 TIGR00416 sms DNA repair prote 81.2 0.72 1.6E-05 38.9 1.0 26 66-91 89-114 (454)
235 TIGR00150 HI0065_YjeE ATPase, 81.2 0.49 1.1E-05 34.2 0.1 23 69-91 20-42 (133)
236 TIGR00362 DnaA chromosomal rep 81.0 0.61 1.3E-05 37.6 0.5 18 71-88 136-153 (405)
237 TIGR02639 ClpA ATP-dependent C 81.0 0.6 1.3E-05 41.1 0.5 38 37-87 182-219 (731)
238 PRK05748 replicative DNA helic 80.8 0.98 2.1E-05 37.2 1.7 26 67-92 199-224 (448)
239 KOG3078|consensus 80.7 0.65 1.4E-05 37.1 0.6 26 71-96 15-40 (235)
240 PRK06547 hypothetical protein; 80.6 0.72 1.6E-05 33.8 0.8 21 71-91 15-35 (172)
241 KOG1807|consensus 80.6 0.2 4.4E-06 46.9 -2.6 40 57-99 382-421 (1025)
242 cd03278 ABC_SMC_barmotin Barmo 80.5 1.1 2.4E-05 33.0 1.7 17 70-87 22-38 (197)
243 PRK14971 DNA polymerase III su 80.4 0.7 1.5E-05 40.5 0.7 39 36-86 16-54 (614)
244 KOG0736|consensus 80.3 0.79 1.7E-05 43.1 1.0 13 73-85 707-719 (953)
245 KOG0737|consensus 80.2 0.62 1.3E-05 39.9 0.4 14 72-85 128-141 (386)
246 cd01121 Sms Sms (bacterial rad 80.2 0.79 1.7E-05 37.8 1.0 23 66-88 77-99 (372)
247 PTZ00202 tuzin; Provisional 80.2 0.93 2E-05 40.4 1.4 42 35-87 260-302 (550)
248 TIGR03600 phage_DnaB phage rep 79.8 0.92 2E-05 36.8 1.2 26 67-92 190-215 (421)
249 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.8 0.89 1.9E-05 32.9 1.0 17 69-85 28-44 (218)
250 cd03269 ABC_putative_ATPase Th 79.6 1.2 2.5E-05 32.2 1.6 22 67-88 22-43 (210)
251 PF00308 Bac_DnaA: Bacterial d 79.5 0.48 1E-05 35.7 -0.5 45 31-86 2-49 (219)
252 KOG0743|consensus 79.5 0.72 1.6E-05 40.2 0.5 20 68-87 232-251 (457)
253 PRK07004 replicative DNA helic 79.5 1.2 2.7E-05 37.4 1.9 24 67-90 209-232 (460)
254 PRK05057 aroK shikimate kinase 79.5 0.99 2.2E-05 32.5 1.2 21 71-91 4-24 (172)
255 TIGR03608 L_ocin_972_ABC putat 79.4 0.93 2E-05 32.4 1.0 17 70-86 23-39 (206)
256 COG2805 PilT Tfp pilus assembl 79.3 1 2.2E-05 38.4 1.3 16 71-86 125-140 (353)
257 TIGR00455 apsK adenylylsulfate 79.2 0.92 2E-05 32.2 0.9 20 70-89 17-36 (184)
258 KOG0651|consensus 79.2 1.2 2.6E-05 38.2 1.8 42 43-87 139-182 (388)
259 PF13555 AAA_29: P-loop contai 79.1 1 2.2E-05 29.1 1.0 15 71-85 23-37 (62)
260 PRK06921 hypothetical protein; 79.0 0.91 2E-05 35.5 0.9 17 71-87 117-133 (266)
261 COG0466 Lon ATP-dependent Lon 78.8 1.3 2.8E-05 41.0 1.9 20 67-86 346-365 (782)
262 KOG0060|consensus 78.7 0.63 1.4E-05 42.2 -0.1 30 67-96 457-486 (659)
263 cd00820 PEPCK_HprK Phosphoenol 78.6 1.1 2.4E-05 31.5 1.2 23 70-92 14-36 (107)
264 cd03288 ABCC_SUR2 The SUR doma 78.6 1.1 2.4E-05 33.7 1.2 22 67-88 43-64 (257)
265 cd03257 ABC_NikE_OppD_transpor 78.5 1 2.2E-05 32.6 1.0 20 69-88 29-48 (228)
266 PRK08116 hypothetical protein; 78.5 0.84 1.8E-05 35.6 0.6 18 71-88 114-131 (268)
267 PRK14729 miaA tRNA delta(2)-is 78.5 1.1 2.4E-05 36.4 1.2 17 71-87 4-20 (300)
268 TIGR02315 ABC_phnC phosphonate 78.4 1 2.3E-05 33.0 1.0 20 68-87 25-44 (243)
269 cd03262 ABC_HisP_GlnQ_permease 78.2 1.1 2.3E-05 32.2 1.0 17 70-86 25-41 (213)
270 cd03226 ABC_cobalt_CbiO_domain 78.2 1.1 2.3E-05 32.3 1.0 19 68-86 23-41 (205)
271 TIGR01166 cbiO cobalt transpor 78.1 1.1 2.4E-05 31.9 1.0 20 68-87 15-34 (190)
272 PRK07952 DNA replication prote 78.0 0.89 1.9E-05 35.5 0.6 17 72-88 100-116 (244)
273 cd03258 ABC_MetN_methionine_tr 77.9 1.2 2.7E-05 32.5 1.3 19 68-86 28-46 (233)
274 PF03796 DnaB_C: DnaB-like hel 77.8 0.86 1.9E-05 34.3 0.4 24 67-90 15-38 (259)
275 cd03292 ABC_FtsE_transporter F 77.8 1.1 2.4E-05 32.1 1.0 18 69-86 25-42 (214)
276 PRK06851 hypothetical protein; 77.6 0.31 6.6E-06 40.7 -2.2 27 70-96 29-55 (367)
277 cd03268 ABC_BcrA_bacitracin_re 77.6 1.1 2.5E-05 32.2 1.0 21 69-89 24-44 (208)
278 TIGR01447 recD exodeoxyribonuc 77.4 1 2.2E-05 39.5 0.8 24 70-93 159-182 (586)
279 PRK06696 uridine kinase; Valid 77.2 1.1 2.4E-05 33.2 0.9 22 71-92 22-43 (223)
280 cd03250 ABCC_MRP_domain1 Domai 77.2 1.3 2.7E-05 31.9 1.2 23 68-90 28-50 (204)
281 cd03256 ABC_PhnC_transporter A 77.2 1.2 2.6E-05 32.6 1.0 22 68-89 24-45 (241)
282 PRK00091 miaA tRNA delta(2)-is 77.2 1.2 2.5E-05 36.0 1.1 18 71-88 4-21 (307)
283 PRK07399 DNA polymerase III su 77.0 0.75 1.6E-05 36.9 -0.1 39 37-87 4-42 (314)
284 cd03237 ABC_RNaseL_inhibitor_d 76.9 1.6 3.4E-05 33.3 1.6 25 63-87 17-41 (246)
285 cd03247 ABCC_cytochrome_bd The 76.8 1.3 2.7E-05 31.5 1.0 24 67-90 24-47 (178)
286 COG4525 TauB ABC-type taurine 76.8 1.4 2.9E-05 36.1 1.3 20 67-86 27-46 (259)
287 PRK10584 putative ABC transpor 76.8 1.2 2.7E-05 32.4 1.0 17 70-86 35-51 (228)
288 TIGR02673 FtsE cell division A 76.7 1.2 2.7E-05 32.0 1.0 17 69-85 26-42 (214)
289 cd03228 ABCC_MRP_Like The MRP 76.7 1.5 3.3E-05 30.9 1.4 20 67-86 24-43 (171)
290 KOG0652|consensus 76.7 1.6 3.5E-05 37.3 1.8 63 18-85 154-219 (424)
291 PRK12422 chromosomal replicati 76.7 0.9 2E-05 38.2 0.3 51 29-87 103-157 (445)
292 cd03225 ABC_cobalt_CbiO_domain 76.7 1.2 2.7E-05 32.0 1.0 18 69-86 25-42 (211)
293 PRK05703 flhF flagellar biosyn 76.7 1.3 2.7E-05 37.2 1.1 18 70-87 220-237 (424)
294 TIGR03410 urea_trans_UrtE urea 76.6 1.3 2.7E-05 32.4 1.0 18 68-85 23-40 (230)
295 TIGR00960 3a0501s02 Type II (G 76.6 1.3 2.7E-05 32.1 1.0 19 68-86 26-44 (216)
296 cd03221 ABCF_EF-3 ABCF_EF-3 E 76.4 1.3 2.8E-05 30.9 1.0 22 67-88 22-43 (144)
297 cd03293 ABC_NrtD_SsuB_transpor 76.3 1.3 2.8E-05 32.3 1.0 17 69-85 28-44 (220)
298 PRK10247 putative ABC transpor 76.3 1.3 2.8E-05 32.6 1.0 19 69-87 31-49 (225)
299 TIGR02211 LolD_lipo_ex lipopro 76.2 1.3 2.8E-05 32.1 1.0 19 69-87 29-47 (221)
300 PRK13764 ATPase; Provisional 76.1 1.2 2.6E-05 39.5 1.0 23 71-93 257-279 (602)
301 cd03224 ABC_TM1139_LivF_branch 76.0 1.3 2.8E-05 32.0 0.9 19 68-86 23-41 (222)
302 COG4178 ABC-type uncharacteriz 76.0 1.5 3.3E-05 39.3 1.5 18 70-87 418-435 (604)
303 PF00580 UvrD-helicase: UvrD/R 75.9 0.86 1.9E-05 33.4 -0.0 14 72-85 14-27 (315)
304 PTZ00088 adenylate kinase 1; P 75.9 1.4 3.1E-05 33.8 1.2 17 74-90 9-25 (229)
305 PRK08939 primosomal protein Dn 75.9 1.2 2.7E-05 35.6 0.9 16 71-86 156-171 (306)
306 cd03214 ABC_Iron-Siderophores_ 75.9 1.7 3.7E-05 31.0 1.5 23 68-90 22-44 (180)
307 PF01637 Arch_ATPase: Archaeal 75.8 0.96 2.1E-05 31.5 0.2 17 71-87 20-36 (234)
308 cd04155 Arl3 Arl3 subfamily. 75.8 1.4 3E-05 29.8 1.0 21 71-91 14-34 (173)
309 cd03246 ABCC_Protease_Secretio 75.7 1.8 3.9E-05 30.6 1.6 20 67-86 24-43 (173)
310 COG1474 CDC6 Cdc6-related prot 75.7 1.4 2.9E-05 36.4 1.1 13 74-86 45-57 (366)
311 PRK14247 phosphate ABC transpo 75.7 1.4 3E-05 32.7 1.0 23 69-91 27-49 (250)
312 cd03301 ABC_MalK_N The N-termi 75.6 1.4 3E-05 31.7 1.0 18 69-86 24-41 (213)
313 PRK13541 cytochrome c biogenes 75.6 1.4 3E-05 31.7 1.0 19 70-88 25-43 (195)
314 TIGR01978 sufC FeS assembly AT 75.5 1.5 3.3E-05 32.1 1.2 22 69-90 24-45 (243)
315 KOG1803|consensus 75.5 1.5 3.2E-05 39.9 1.4 15 72-86 202-216 (649)
316 PRK05595 replicative DNA helic 75.5 1.6 3.6E-05 36.0 1.5 26 67-92 197-222 (444)
317 PRK11124 artP arginine transpo 75.4 1.5 3.3E-05 32.3 1.2 19 68-86 25-43 (242)
318 cd03232 ABC_PDR_domain2 The pl 75.4 1.5 3.2E-05 31.6 1.1 22 70-91 32-53 (192)
319 cd03254 ABCC_Glucan_exporter_l 75.3 1.4 3.1E-05 32.0 1.0 22 67-88 25-46 (229)
320 cd03260 ABC_PstB_phosphate_tra 75.3 1.4 3.1E-05 32.1 1.0 21 69-89 24-44 (227)
321 cd03235 ABC_Metallic_Cations A 75.2 1.6 3.5E-05 31.5 1.3 22 67-88 21-42 (213)
322 TIGR00750 lao LAO/AO transport 75.2 1.4 3.1E-05 34.4 1.1 21 70-90 33-53 (300)
323 PRK13539 cytochrome c biogenes 75.2 1.5 3.1E-05 32.0 1.0 23 67-89 24-46 (207)
324 cd03266 ABC_NatA_sodium_export 75.0 1.5 3.2E-05 31.7 1.0 20 68-87 28-47 (218)
325 PRK15177 Vi polysaccharide exp 74.9 1.6 3.4E-05 32.3 1.1 18 70-87 12-29 (213)
326 cd03245 ABCC_bacteriocin_expor 74.9 1.8 3.8E-05 31.4 1.4 21 69-89 28-48 (220)
327 TIGR03864 PQQ_ABC_ATP ABC tran 74.9 1.8 4E-05 31.9 1.5 19 68-86 24-42 (236)
328 PRK10536 hypothetical protein; 74.8 1.3 2.9E-05 35.7 0.8 16 71-86 74-89 (262)
329 PRK13948 shikimate kinase; Pro 74.7 1.7 3.7E-05 32.4 1.3 18 70-87 9-26 (182)
330 cd03253 ABCC_ATM1_transporter 74.7 1.8 4E-05 31.6 1.5 25 67-91 23-47 (236)
331 PRK14242 phosphate transporter 74.6 1.6 3.5E-05 32.4 1.2 21 68-88 29-49 (253)
332 PRK06835 DNA replication prote 74.6 1.2 2.7E-05 36.2 0.6 16 72-87 184-199 (329)
333 cd03234 ABCG_White The White s 74.6 1.6 3.4E-05 32.0 1.1 19 67-85 29-47 (226)
334 PRK10869 recombination and rep 74.5 0.98 2.1E-05 39.0 -0.0 22 69-94 20-41 (553)
335 TIGR00064 ftsY signal recognit 74.4 1.4 3E-05 34.6 0.8 16 71-86 72-87 (272)
336 TIGR03005 ectoine_ehuA ectoine 74.4 1.7 3.7E-05 32.4 1.2 19 68-86 23-41 (252)
337 PLN02674 adenylate kinase 74.4 1.5 3.1E-05 34.6 0.9 18 72-89 32-49 (244)
338 PRK08154 anaerobic benzoate ca 74.3 1.5 3.3E-05 34.6 1.0 26 65-90 127-152 (309)
339 PRK14974 cell division protein 74.2 1.6 3.4E-05 35.8 1.1 18 70-87 139-156 (336)
340 TIGR03346 chaperone_ClpB ATP-d 74.2 0.92 2E-05 40.8 -0.3 16 71-86 194-209 (852)
341 cd03259 ABC_Carb_Solutes_like 74.2 1.6 3.4E-05 31.5 1.0 20 68-87 23-42 (213)
342 TIGR00678 holB DNA polymerase 74.1 1.4 3.1E-05 31.4 0.7 18 71-88 14-31 (188)
343 cd03264 ABC_drug_resistance_li 74.1 1.4 3E-05 31.8 0.7 17 70-87 25-41 (211)
344 cd03261 ABC_Org_Solvent_Resist 74.1 1.6 3.5E-05 32.1 1.0 19 68-86 23-41 (235)
345 TIGR02323 CP_lyasePhnK phospho 74.0 1.6 3.4E-05 32.5 1.0 17 70-86 28-44 (253)
346 PRK11248 tauB taurine transpor 74.0 1.6 3.4E-05 33.1 1.0 20 68-87 24-43 (255)
347 cd03296 ABC_CysA_sulfate_impor 74.0 1.6 3.5E-05 32.2 1.0 21 67-87 24-44 (239)
348 PRK08760 replicative DNA helic 74.0 1.9 4.2E-05 36.5 1.6 26 67-92 225-250 (476)
349 cd03219 ABC_Mj1267_LivG_branch 74.0 1.6 3.4E-05 31.9 1.0 22 68-89 23-44 (236)
350 cd03281 ABC_MSH5_euk MutS5 hom 74.0 1.6 3.6E-05 32.7 1.1 16 72-87 30-45 (213)
351 PRK13946 shikimate kinase; Pro 73.9 1.6 3.5E-05 31.4 1.0 18 70-87 9-26 (184)
352 PRK10416 signal recognition pa 73.8 1.5 3.2E-05 35.4 0.9 17 70-86 113-129 (318)
353 cd03263 ABC_subfamily_A The AB 73.7 1.7 3.6E-05 31.5 1.0 18 68-85 25-42 (220)
354 PF02463 SMC_N: RecF/RecN/SMC 73.6 1.2 2.7E-05 32.2 0.3 18 69-86 22-39 (220)
355 PRK11629 lolD lipoprotein tran 73.5 1.7 3.6E-05 32.0 1.0 18 69-86 33-50 (233)
356 COG1855 ATPase (PilT family) [ 73.5 1.3 2.8E-05 39.8 0.5 15 74-88 266-280 (604)
357 PRK08058 DNA polymerase III su 73.4 1.2 2.6E-05 35.5 0.2 36 39-86 7-43 (329)
358 KOG3347|consensus 73.3 2 4.2E-05 33.6 1.4 20 71-90 7-26 (176)
359 PRK13543 cytochrome c biogenes 73.3 1.7 3.6E-05 31.8 0.9 23 68-90 34-56 (214)
360 cd03218 ABC_YhbG The ABC trans 73.2 1.7 3.7E-05 31.7 1.0 18 69-86 24-41 (232)
361 cd03249 ABC_MTABC3_MDL1_MDL2 M 73.1 1.6 3.6E-05 32.0 0.9 18 70-87 28-45 (238)
362 COG1484 DnaC DNA replication p 73.1 1.4 3E-05 34.3 0.5 17 70-86 104-120 (254)
363 PRK09165 replicative DNA helic 73.1 1.9 4.2E-05 36.6 1.4 23 67-89 213-235 (497)
364 cd03213 ABCG_EPDR ABCG transpo 73.1 1.8 4E-05 31.3 1.1 24 68-91 32-55 (194)
365 TIGR02324 CP_lyasePhnL phospho 73.0 1.8 3.8E-05 31.5 1.0 19 68-86 31-49 (224)
366 PRK13538 cytochrome c biogenes 73.0 2 4.3E-05 31.1 1.3 19 68-86 24-42 (204)
367 PRK10908 cell division protein 73.0 1.8 3.9E-05 31.6 1.0 22 69-90 26-47 (222)
368 cd03251 ABCC_MsbA MsbA is an e 72.9 2.2 4.8E-05 31.1 1.5 21 68-88 25-45 (234)
369 COG0497 RecN ATPase involved i 72.9 1.1 2.4E-05 39.8 -0.1 22 69-94 20-41 (557)
370 PRK10733 hflB ATP-dependent me 72.9 1.1 2.5E-05 39.1 0.0 49 36-87 151-201 (644)
371 PLN02840 tRNA dimethylallyltra 72.9 1.8 3.9E-05 37.0 1.2 20 68-87 18-37 (421)
372 PRK14267 phosphate ABC transpo 72.8 1.8 3.8E-05 32.2 1.0 19 69-87 28-46 (253)
373 cd00268 DEADc DEAD-box helicas 72.8 1.7 3.7E-05 30.6 0.9 15 71-85 36-50 (203)
374 cd03298 ABC_ThiQ_thiamine_tran 72.8 1.8 3.9E-05 31.2 1.0 22 68-89 21-42 (211)
375 TIGR00968 3a0106s01 sulfate AB 72.8 2.2 4.9E-05 31.6 1.5 21 67-87 22-42 (237)
376 PRK10771 thiQ thiamine transpo 72.8 1.8 3.9E-05 31.9 1.0 21 67-87 21-41 (232)
377 KOG0990|consensus 72.7 1.7 3.8E-05 37.0 1.1 16 73-88 64-79 (360)
378 PRK13540 cytochrome c biogenes 72.7 2.3 4.9E-05 30.7 1.5 23 67-89 23-45 (200)
379 PRK06995 flhF flagellar biosyn 72.7 1.8 3.8E-05 37.5 1.1 21 70-90 255-275 (484)
380 cd03223 ABCD_peroxisomal_ALDP 72.5 1.9 4.1E-05 30.6 1.0 24 67-90 23-46 (166)
381 PRK12338 hypothetical protein; 72.5 1.8 3.9E-05 35.7 1.1 18 71-88 4-21 (319)
382 TIGR01448 recD_rel helicase, p 72.5 1.7 3.8E-05 38.6 1.0 25 71-95 338-362 (720)
383 PF01580 FtsK_SpoIIIE: FtsK/Sp 72.5 1.2 2.5E-05 32.1 -0.0 16 73-88 40-55 (205)
384 PRK09493 glnQ glutamine ABC tr 72.4 1.8 4E-05 31.9 1.0 19 69-87 25-43 (240)
385 PRK06904 replicative DNA helic 72.4 2 4.4E-05 36.4 1.4 24 66-89 216-239 (472)
386 cd03233 ABC_PDR_domain1 The pl 72.2 1.8 3.9E-05 31.5 0.9 18 70-87 32-49 (202)
387 cd03229 ABC_Class3 This class 72.1 1.9 4.2E-05 30.6 1.0 20 67-86 22-41 (178)
388 cd00267 ABC_ATPase ABC (ATP-bi 72.1 2.5 5.4E-05 29.2 1.6 20 67-86 21-40 (157)
389 cd03265 ABC_DrrA DrrA is the A 72.1 1.9 4E-05 31.4 0.9 19 69-87 24-42 (220)
390 cd03215 ABC_Carb_Monos_II This 72.1 1.9 4.2E-05 30.7 1.0 18 69-86 24-41 (182)
391 TIGR01277 thiQ thiamine ABC tr 71.9 1.9 4.2E-05 31.3 1.0 19 68-86 21-39 (213)
392 PRK06851 hypothetical protein; 71.9 1.7 3.8E-05 36.3 0.8 25 71-95 214-238 (367)
393 PRK14239 phosphate transporter 71.9 1.9 4.2E-05 31.9 1.0 23 69-91 29-51 (252)
394 PRK11264 putative amino-acid A 71.7 2 4.3E-05 31.8 1.0 19 69-87 27-45 (250)
395 PRK11614 livF leucine/isoleuci 71.7 1.9 4.2E-05 31.7 1.0 22 68-89 28-49 (237)
396 PRK10895 lipopolysaccharide AB 71.7 2 4.3E-05 31.7 1.0 20 68-87 26-45 (241)
397 cd03244 ABCC_MRP_domain2 Domai 71.6 2 4.3E-05 31.1 1.0 21 69-89 28-48 (221)
398 TIGR01189 ccmA heme ABC export 71.5 2.5 5.4E-05 30.4 1.5 20 67-86 22-41 (198)
399 PRK14262 phosphate ABC transpo 71.5 2 4.4E-05 31.9 1.0 23 67-89 25-47 (250)
400 PRK12726 flagellar biosynthesi 71.4 2 4.4E-05 36.9 1.1 19 68-86 203-221 (407)
401 PRK06321 replicative DNA helic 71.2 2.3 5E-05 36.2 1.4 26 67-92 222-247 (472)
402 cd03230 ABC_DR_subfamily_A Thi 71.1 2.1 4.5E-05 30.3 1.0 19 68-86 23-41 (173)
403 cd03241 ABC_RecN RecN ATPase i 71.1 3.2 7E-05 31.9 2.1 17 69-85 19-35 (276)
404 PRK13645 cbiO cobalt transport 71.0 2 4.4E-05 32.9 1.0 18 69-86 35-52 (289)
405 cd01878 HflX HflX subfamily. 71.0 0.78 1.7E-05 32.5 -1.2 21 72-92 42-62 (204)
406 PF00158 Sigma54_activat: Sigm 71.0 1.9 4.1E-05 31.5 0.8 14 72-85 23-36 (168)
407 PRK09580 sufC cysteine desulfu 70.9 2.1 4.5E-05 31.5 1.0 21 70-90 26-46 (248)
408 cd03252 ABCC_Hemolysin The ABC 70.9 2.1 4.5E-05 31.4 1.0 23 68-90 25-47 (237)
409 PRK05416 glmZ(sRNA)-inactivati 70.8 1.8 3.9E-05 34.6 0.7 19 71-89 6-24 (288)
410 PRK10575 iron-hydroxamate tran 70.8 2.1 4.6E-05 32.4 1.0 23 69-91 35-57 (265)
411 PRK14256 phosphate ABC transpo 70.7 2.1 4.6E-05 31.9 1.0 20 68-87 27-46 (252)
412 PRK03846 adenylylsulfate kinas 70.6 2 4.4E-05 31.2 0.9 18 70-87 23-40 (198)
413 TIGR02168 SMC_prok_B chromosom 70.5 2.5 5.3E-05 36.9 1.5 19 69-87 21-39 (1179)
414 cd01128 rho_factor Transcripti 70.5 2.2 4.8E-05 33.4 1.1 21 70-90 15-35 (249)
415 CHL00095 clpC Clp protease ATP 70.5 1.8 3.9E-05 38.8 0.7 16 71-86 200-215 (821)
416 PRK11247 ssuB aliphatic sulfon 70.5 2.1 4.6E-05 32.8 1.0 20 69-88 36-55 (257)
417 cd03248 ABCC_TAP TAP, the Tran 70.4 2.2 4.7E-05 31.1 1.0 22 68-89 37-58 (226)
418 TIGR00972 3a0107s01c2 phosphat 70.4 2.2 4.7E-05 31.7 1.0 18 68-85 24-41 (247)
419 TIGR02770 nickel_nikD nickel i 70.4 2.2 4.7E-05 31.4 1.0 18 68-85 9-26 (230)
420 PRK14240 phosphate transporter 70.4 2.2 4.7E-05 31.7 1.0 21 70-90 28-48 (250)
421 PRK13632 cbiO cobalt transport 70.3 2.7 5.9E-05 31.9 1.6 19 69-87 33-51 (271)
422 COG0419 SbcC ATPase involved i 70.1 2.4 5.3E-05 38.1 1.4 19 67-85 21-39 (908)
423 cd03295 ABC_OpuCA_Osmoprotecti 70.0 2.3 4.9E-05 31.5 1.0 21 67-87 23-43 (242)
424 TIGR03411 urea_trans_UrtD urea 70.0 2.2 4.8E-05 31.4 1.0 19 69-87 26-44 (242)
425 PRK10865 protein disaggregatio 70.0 1.9 4E-05 39.2 0.7 16 71-86 199-214 (857)
426 PRK11300 livG leucine/isoleuci 69.9 2.7 5.9E-05 31.2 1.4 19 69-87 29-47 (255)
427 TIGR03740 galliderm_ABC gallid 69.8 2.3 5E-05 31.0 1.0 19 68-86 23-41 (223)
428 TIGR03771 anch_rpt_ABC anchore 69.7 2.2 4.8E-05 31.4 0.9 18 70-87 5-22 (223)
429 cd03275 ABC_SMC1_euk Eukaryoti 69.7 2.5 5.4E-05 31.8 1.2 18 70-87 21-38 (247)
430 KOG2373|consensus 69.7 2.7 5.8E-05 37.1 1.5 24 64-89 268-291 (514)
431 PF00931 NB-ARC: NB-ARC domain 69.5 1.6 3.4E-05 32.3 0.1 20 70-89 18-37 (287)
432 cd03270 ABC_UvrA_I The excisio 69.4 2.2 4.8E-05 31.8 0.9 21 67-87 17-37 (226)
433 cd03273 ABC_SMC2_euk Eukaryoti 69.4 2.5 5.4E-05 31.7 1.2 18 69-86 23-40 (251)
434 PRK14274 phosphate ABC transpo 69.4 2.3 5.1E-05 31.8 1.0 22 68-89 35-56 (259)
435 PRK11701 phnK phosphonate C-P 69.3 2.4 5.1E-05 31.8 1.0 18 70-87 31-48 (258)
436 cd03290 ABCC_SUR1_N The SUR do 69.2 3 6.5E-05 30.3 1.5 23 68-90 24-46 (218)
437 PTZ00112 origin recognition co 69.2 2.2 4.7E-05 41.0 1.0 49 34-91 752-801 (1164)
438 TIGR01184 ntrCD nitrate transp 69.2 2.4 5.2E-05 31.4 1.0 19 69-87 9-27 (230)
439 PHA02653 RNA helicase NPH-II; 69.2 2.5 5.5E-05 37.8 1.3 60 25-86 125-194 (675)
440 PRK13638 cbiO cobalt transport 69.2 2.4 5.2E-05 32.2 1.0 21 67-87 23-43 (271)
441 COG1618 Predicted nucleotide k 69.1 2 4.4E-05 33.5 0.6 20 73-92 7-26 (179)
442 cd03369 ABCC_NFT1 Domain 2 of 69.1 2.4 5.3E-05 30.5 1.0 19 69-87 32-50 (207)
443 PRK13649 cbiO cobalt transport 69.1 2.4 5.2E-05 32.2 1.0 19 69-87 31-49 (280)
444 PRK12608 transcription termina 69.0 2.4 5.1E-05 36.0 1.0 21 70-90 132-152 (380)
445 PRK04220 2-phosphoglycerate ki 69.0 1.9 4.1E-05 35.3 0.5 17 72-88 93-109 (301)
446 PRK08506 replicative DNA helic 69.0 2.7 5.9E-05 35.5 1.4 29 67-95 188-216 (472)
447 PF10236 DAP3: Mitochondrial r 68.9 1.6 3.5E-05 34.8 0.1 16 70-85 22-37 (309)
448 KOG0742|consensus 68.8 2.4 5.2E-05 38.1 1.1 17 72-88 385-401 (630)
449 cd03279 ABC_sbcCD SbcCD and ot 68.7 2.7 5.9E-05 30.8 1.2 20 71-90 28-47 (213)
450 cd01918 HprK_C HprK/P, the bif 68.7 2.3 4.9E-05 31.4 0.8 18 70-87 13-30 (149)
451 PHA02624 large T antigen; Prov 68.7 1 2.2E-05 40.8 -1.2 24 69-92 429-452 (647)
452 PRK03695 vitamin B12-transport 68.6 2.5 5.4E-05 31.7 1.0 21 69-89 20-40 (248)
453 cd03217 ABC_FeS_Assembly ABC-t 68.6 2.5 5.5E-05 30.6 1.0 18 69-86 24-41 (200)
454 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 68.6 2.5 5.4E-05 31.3 1.0 23 68-90 45-67 (224)
455 cd03216 ABC_Carb_Monos_I This 68.6 2.6 5.6E-05 29.8 1.0 21 67-87 22-42 (163)
456 PRK04132 replication factor C 68.6 3.3 7.1E-05 38.3 1.9 37 36-85 18-54 (846)
457 cd03239 ABC_SMC_head The struc 68.5 3.8 8.3E-05 29.9 1.9 15 71-85 22-36 (178)
458 PRK14261 phosphate ABC transpo 68.5 2.5 5.4E-05 31.5 1.0 23 69-91 30-52 (253)
459 PRK13548 hmuV hemin importer A 68.4 2.5 5.5E-05 31.9 1.0 23 69-91 26-48 (258)
460 PRK10419 nikE nickel transport 68.3 2.5 5.5E-05 32.1 1.0 18 70-87 37-54 (268)
461 PRK08840 replicative DNA helic 68.3 2.8 6E-05 35.6 1.3 26 66-91 212-237 (464)
462 cd03267 ABC_NatA_like Similar 68.2 2.6 5.6E-05 31.4 1.0 22 69-90 45-66 (236)
463 PRK12724 flagellar biosynthesi 68.1 2.5 5.5E-05 36.4 1.1 20 70-89 222-241 (432)
464 cd03242 ABC_RecF RecF is a rec 68.1 2.7 5.8E-05 32.2 1.1 17 69-85 19-35 (270)
465 PRK14250 phosphate ABC transpo 68.1 2.6 5.6E-05 31.4 1.0 19 69-87 27-45 (241)
466 cd03282 ABC_MSH4_euk MutS4 hom 68.1 2.9 6.3E-05 31.4 1.3 18 70-87 28-45 (204)
467 PRK14266 phosphate ABC transpo 68.1 3.3 7.1E-05 30.7 1.5 21 68-88 26-46 (250)
468 cd04114 Rab30 Rab30 subfamily. 68.1 2.2 4.8E-05 28.6 0.6 21 72-92 8-28 (169)
469 TIGR03345 VI_ClpV1 type VI sec 68.0 2 4.3E-05 39.1 0.4 15 72-86 209-223 (852)
470 PRK14249 phosphate ABC transpo 67.9 3 6.6E-05 31.0 1.3 19 67-85 26-44 (251)
471 COG2812 DnaX DNA polymerase II 67.9 1.7 3.6E-05 38.1 -0.1 39 36-86 15-53 (515)
472 PRK09270 nucleoside triphospha 67.9 2.4 5.2E-05 31.6 0.8 21 71-91 33-53 (229)
473 PRK13547 hmuV hemin importer A 67.7 2.6 5.7E-05 32.5 1.0 20 70-89 26-45 (272)
474 PRK10744 pstB phosphate transp 67.7 2.6 5.7E-05 31.7 1.0 23 69-91 37-59 (260)
475 PRK11607 potG putrescine trans 67.7 2.8 6E-05 34.4 1.2 20 67-86 41-60 (377)
476 KOG0064|consensus 67.6 2.9 6.2E-05 38.4 1.4 16 70-85 507-522 (728)
477 PLN02748 tRNA dimethylallyltra 67.6 2.5 5.3E-05 36.5 0.9 17 71-87 22-38 (468)
478 PRK14244 phosphate ABC transpo 67.5 2.7 5.9E-05 31.3 1.0 20 68-87 28-47 (251)
479 TIGR01618 phage_P_loop phage n 67.5 2.4 5.1E-05 32.9 0.7 17 72-88 13-29 (220)
480 KOG1969|consensus 67.5 2.9 6.2E-05 39.2 1.4 19 69-87 324-342 (877)
481 PRK15112 antimicrobial peptide 67.4 2.6 5.7E-05 32.0 1.0 16 70-85 38-53 (267)
482 PRK13648 cbiO cobalt transport 67.4 2.7 5.9E-05 31.8 1.0 19 69-87 33-51 (269)
483 PRK14259 phosphate ABC transpo 67.3 2.7 5.9E-05 32.0 1.0 23 68-90 36-58 (269)
484 PRK10919 ATP-dependent DNA hel 67.2 2.6 5.7E-05 37.0 1.0 15 70-85 15-29 (672)
485 PRK09984 phosphonate/organopho 67.2 2.7 5.9E-05 31.5 1.0 18 69-86 28-45 (262)
486 PRK11831 putative ABC transpor 67.1 2.8 6.1E-05 31.9 1.0 21 68-88 30-50 (269)
487 PRK06749 replicative DNA helic 67.1 3.5 7.6E-05 34.5 1.7 26 66-91 181-206 (428)
488 PRK14241 phosphate transporter 66.7 2.8 6.1E-05 31.4 1.0 21 68-88 27-47 (258)
489 PRK14273 phosphate ABC transpo 66.7 2.9 6.3E-05 31.2 1.0 20 67-86 29-48 (254)
490 CHL00131 ycf16 sulfate ABC tra 66.6 2.9 6.3E-05 31.0 1.0 21 69-89 31-51 (252)
491 PF05970 PIF1: PIF1-like helic 66.5 2.7 5.8E-05 33.9 0.9 18 70-87 21-38 (364)
492 COG0378 HypB Ni2+-binding GTPa 66.4 2.6 5.7E-05 33.3 0.8 15 72-86 14-28 (202)
493 KOG0729|consensus 66.3 3.2 6.9E-05 35.7 1.3 20 67-86 207-226 (435)
494 PRK14255 phosphate ABC transpo 66.2 3 6.5E-05 31.0 1.0 21 68-88 28-48 (252)
495 cd03294 ABC_Pro_Gly_Bertaine T 66.2 3 6.5E-05 31.8 1.0 22 67-88 46-67 (269)
496 cd03240 ABC_Rad50 The catalyti 66.2 3.3 7.2E-05 30.6 1.3 17 71-87 22-38 (204)
497 PF02562 PhoH: PhoH-like prote 66.1 3.8 8.2E-05 31.6 1.6 14 72-85 20-33 (205)
498 PRK14087 dnaA chromosomal repl 66.1 2.4 5.2E-05 35.6 0.5 14 72-85 142-155 (450)
499 PRK14253 phosphate ABC transpo 65.9 3 6.6E-05 30.9 1.0 21 68-88 26-46 (249)
500 PRK15056 manganese/iron transp 65.8 3 6.6E-05 31.7 1.0 20 68-87 30-49 (272)
No 1
>KOG1942|consensus
Probab=99.95 E-value=6.8e-30 Score=212.64 Aligned_cols=83 Identities=49% Similarity=0.646 Sum_probs=77.4
Q ss_pred CccceeecceeeeeeccccccccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCC
Q psy2779 1 MKIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRT 80 (101)
Q Consensus 1 ~~i~ev~~~~r~~RIaaHSHIkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p 80 (101)
++|+||+++.+.+||++||||||||||+.|.|.+.++|||||++||||||||||| +|++ +++||++|++|||
T Consensus 2 ~~ieeVkst~~~~ria~HsHvkgLGlde~g~~~~~~~g~vGQ~~AReAagiivdl-------ik~K-kmaGravLlaGpp 73 (456)
T KOG1942|consen 2 VKIEEVKSTGRTQRIAAHSHVKGLGLDETGNAVEVAAGFVGQENAREAAGIIVDL-------IKSK-KMAGRAVLLAGPP 73 (456)
T ss_pred cchhhhcccccchhhhhhhhccccCcCCCCCeeecccccccchhhhhhhhHHHHH-------HHhh-hccCcEEEEecCC
Confidence 5899999999999999999999999999999999999999999999999999999 5554 5689999999999
Q ss_pred CCC--------------CCCCceee
Q psy2779 81 KCP--------------KPPNTSMI 91 (101)
Q Consensus 81 ~~g--------------~~~~~~~~ 91 (101)
||| |.||++|.
T Consensus 74 gtGKTAlAlaisqELG~kvPFcpmv 98 (456)
T KOG1942|consen 74 GTGKTALALAISQELGPKVPFCPMV 98 (456)
T ss_pred CCchhHHHHHHHHHhCCCCCccccc
Confidence 999 56999986
No 2
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.94 E-value=2.4e-28 Score=204.87 Aligned_cols=74 Identities=35% Similarity=0.516 Sum_probs=67.5
Q ss_pred eeeeeeccccccccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCC------
Q psy2779 10 VKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCP------ 83 (101)
Q Consensus 10 ~r~~RIaaHSHIkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g------ 83 (101)
...+|+++||||||||||+||+|++.++|||||++|||||||||+| +|+++ ++||.+|++||||||
T Consensus 12 ~~~~~i~aHSHI~GLGLdeng~~k~~~dG~VGQ~~AReAaGvIv~m-------ik~gk-~aGrgiLi~GppgTGKTAlA~ 83 (450)
T COG1224 12 GERERIAAHSHIKGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKM-------IKQGK-MAGRGILIVGPPGTGKTALAM 83 (450)
T ss_pred chhcccchhccccccccCCCCCEeEcCCcccchHHHHHhhhHHHHH-------HHhCc-ccccEEEEECCCCCcHHHHHH
Confidence 4557999999999999999999999999999999999999999999 66665 589999999999999
Q ss_pred --------CCCCceee
Q psy2779 84 --------KPPNTSMI 91 (101)
Q Consensus 84 --------~~~~~~~~ 91 (101)
++||++|.
T Consensus 84 gIa~eLG~dvPF~~is 99 (450)
T COG1224 84 GIARELGEDVPFVAIS 99 (450)
T ss_pred HHHHHhCCCCCceeec
Confidence 57999885
No 3
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.94 E-value=1.6e-28 Score=204.25 Aligned_cols=70 Identities=41% Similarity=0.577 Sum_probs=53.0
Q ss_pred eeccccccccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCC----------
Q psy2779 14 RISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCP---------- 83 (101)
Q Consensus 14 RIaaHSHIkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g---------- 83 (101)
||++||||||||||++++|.+.++|||||++||||||+|||| +|++| ++||++|++||||||
T Consensus 1 Ri~~HSHI~GLGld~~~~~~~~~~GlVGQ~~AReAagiiv~m-------Ik~~K-~aGr~iLiaGppGtGKTAlA~~ia~ 72 (398)
T PF06068_consen 1 RIGAHSHIKGLGLDENGEARYIADGLVGQEKAREAAGIIVDM-------IKEGK-IAGRAILIAGPPGTGKTALAMAIAK 72 (398)
T ss_dssp HHGCCTT--S--B-TTS-B-SEETTEES-HHHHHHHHHHHHH-------HHTT---TT-EEEEEE-TTSSHHHHHHHHHH
T ss_pred CcccccccccCCcCCCCCEeeccccccChHHHHHHHHHHHHH-------Hhccc-ccCcEEEEeCCCCCCchHHHHHHHH
Confidence 799999999999999999999999999999999999999999 55554 689999999999999
Q ss_pred ----CCCCceee
Q psy2779 84 ----KPPNTSMI 91 (101)
Q Consensus 84 ----~~~~~~~~ 91 (101)
|+||++|.
T Consensus 73 eLG~~~PF~~is 84 (398)
T PF06068_consen 73 ELGEDVPFVSIS 84 (398)
T ss_dssp HCTTTS-EEEEE
T ss_pred HhCCCCCeeEcc
Confidence 58999885
No 4
>KOG2680|consensus
Probab=99.92 E-value=3.5e-26 Score=190.70 Aligned_cols=81 Identities=30% Similarity=0.467 Sum_probs=74.6
Q ss_pred cceeecceeeeeeccccccccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCC
Q psy2779 3 IEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKC 82 (101)
Q Consensus 3 i~ev~~~~r~~RIaaHSHIkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~ 82 (101)
..|+++..+.+||++||||+|||||+..+|++.++|||||.+||+|||+|++| +|. .+++||++|++|+|||
T Consensus 6 ~~e~rDv~~veri~aHSHI~GlGldd~le~~~~s~GmVGQ~~AR~Aagvi~km-----i~e---gkiaGraiLiaG~pgt 77 (454)
T KOG2680|consen 6 LIEIRDVTRVERIGAHSHIRGLGLDDVLEPRYVSEGMVGQVKARKAAGVILKM-----IRE---GKIAGRAILIAGQPGT 77 (454)
T ss_pred cccccchhhhhhccchhhccccCCCcccCcccccccchhhHHHHHHhHHHHHH-----HHc---CcccceEEEEecCCCC
Confidence 45788999999999999999999999999999999999999999999999999 555 5679999999999999
Q ss_pred CC--------------CCCceee
Q psy2779 83 PK--------------PPNTSMI 91 (101)
Q Consensus 83 g~--------------~~~~~~~ 91 (101)
|| +||||++
T Consensus 78 GKtAiAmg~sksLG~~tpF~~i~ 100 (454)
T KOG2680|consen 78 GKTAIAMGMSKSLGDDTPFTSIS 100 (454)
T ss_pred CceeeeeehhhhhCCCCceeeee
Confidence 96 6888875
No 5
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.13 E-value=0.00012 Score=61.29 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=36.4
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccc---cceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFR---GGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~---g~~ll~~G~p~~g~~ 85 (101)
.-+-.||||+|.++|.||++- .++-.+|+ -+-+|.-||||||||
T Consensus 119 t~ddViGqEeAK~kcrli~~y-------LenPe~Fg~WAPknVLFyGppGTGKT 165 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEY-------LENPERFGDWAPKNVLFYGPPGTGKT 165 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHH-------hhChHHhcccCcceeEEECCCCccHH
Confidence 446689999999999999988 66655554 578999999999965
No 6
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00091 Score=58.11 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=30.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.+||+.||+|+-| --++|.=||+-||||||||=
T Consensus 178 ~~DV~GQ~~AKrAlei---------------AAAGgHnLl~~GpPGtGKTm 213 (490)
T COG0606 178 FKDVKGQEQAKRALEI---------------AAAGGHNLLLVGPPGTGKTM 213 (490)
T ss_pred hhhhcCcHHHHHHHHH---------------HHhcCCcEEEecCCCCchHH
Confidence 4568999999999754 34579999999999999973
No 7
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.43 E-value=0.00095 Score=51.82 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.1
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+-.+||+.|++|+-|- -+++.=||+.||||||||
T Consensus 3 ~dI~GQe~aKrAL~iA---------------AaG~h~lLl~GppGtGKT 36 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIA---------------AAGGHHLLLIGPPGTGKT 36 (206)
T ss_dssp CCSSSTHHHHHHHHHH---------------HHCC--EEEES-CCCTHH
T ss_pred hhhcCcHHHHHHHHHH---------------HcCCCCeEEECCCCCCHH
Confidence 4579999999998653 335778999999999985
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.39 E-value=0.00072 Score=51.27 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=29.9
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
-+.||||++..+.....++. .+... -.-.-+|+.||||||||-..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~-------~~~~~-~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEA-------AKMRQ-EALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHH-------HHhcC-CCCCeEEEECCCCCCHHHHH
Confidence 45799999999986665554 11111 01234789999999998543
No 9
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.02 E-value=0.0015 Score=54.34 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=29.3
Q ss_pred cccchHHHHhhcceeeecccceeeeeccc------cccccceEEecCCCCCCCC
Q psy2779 38 GLVGQQAAREVSRAVTWEKSFQFERCKSH------SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 38 GlVGQ~~AREAaGIVVdm~~~~~~~~~~~------~~~~g~~ll~~G~p~~g~~ 85 (101)
=+|||+.|.++.-+-|-- .+.|++.. --...+-+|+.||||||||
T Consensus 72 ~ViGq~~ak~~l~~av~~---~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYN---HYKRLRHGDKKDDDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred HeeChHHHHHHHHHHHHH---HHHhhhcccccccccccCCceEEEEcCCCCCHH
Confidence 479999999998765521 11223211 1123466889999999986
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.94 E-value=0.002 Score=50.33 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=32.0
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..+-||||++..++....++. .+..+. .-..+|+.||||||||-
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~-------~~~~~~-~~~~~ll~GppG~GKT~ 66 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEA-------AKKRGE-ALDHVLLYGPPGLGKTT 66 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHH-------HHhcCC-CCCcEEEECCCCccHHH
Confidence 457799999999998777765 211111 23568899999999984
No 11
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.93 E-value=0.001 Score=50.45 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=30.4
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccc--cceEEecCCCCCCCCCCce
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFR--GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~--g~~ll~~G~p~~g~~~~~~ 89 (101)
+.|||++++.++.-=++.....+..|.+.+.... ..-+|+.||||||||-...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHH
Confidence 5689999998877544333111111221111112 2356899999999986543
No 12
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.91 E-value=0.0019 Score=51.40 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=31.0
Q ss_pred CCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 30 GEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 30 g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..|. +-+-||||++..+-..+..+. ++..+. .=--+|+.||||||||-
T Consensus 18 lRP~-~L~efiGQ~~l~~~l~i~i~a-------a~~r~~-~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 18 LRPK-SLDEFIGQEHLKGNLKILIRA-------AKKRGE-ALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp TS-S-SCCCS-S-HHHHHHHHHHHHH-------HHCTTS----EEEEESSTTSSHHH
T ss_pred cCCC-CHHHccCcHHHHhhhHHHHHH-------HHhcCC-CcceEEEECCCccchhH
Confidence 4444 367899999999999988887 321110 01247899999999964
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.61 E-value=0.0032 Score=51.14 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=31.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+++-+..+++..+ +++.. -..+|+.||||||||-
T Consensus 11 l~d~vGq~~~v~~~~~L~~~-------i~~~~---~~~ilL~GppGtGKTt 51 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRM-------IEAGR---LSSMILWGPPGTGKTT 51 (413)
T ss_pred HHHhcCcHHHhCcchHHHHH-------HHcCC---CceEEEECCCCCCHHH
Confidence 45699999988777778777 54444 2367889999999974
No 14
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.59 E-value=0.004 Score=53.43 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=30.6
Q ss_pred cCcccchHHHHhhcceeeecccceeeeecc----ccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKS----HSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~----~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-+|||.+|.+|.-+.+-. .|.|..- ..-...+-+|+.||||||||-
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n---~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRN---RYRRSQLNEELKDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred hhhccCHHHHHHHHHHHHHh---hhhhhccccccccccCCceEEEECCCCCCHHH
Confidence 35589999999999776654 1111110 001123567899999999863
No 15
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.47 E-value=0.0039 Score=42.72 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=21.1
Q ss_pred ccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCce
Q psy2779 39 LVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 39 lVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
|||-++..+..-=.+++ .+++. ++.+++.|++|||||=...
T Consensus 2 fvgR~~e~~~l~~~l~~-------~~~~~---~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-------AQSGS---PRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-------TSS--------EEE-B-TTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-------HHcCC---CcEEEEECCCCCCHHHHHH
Confidence 56666666655444444 43333 6899999999999985543
No 16
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.31 E-value=0.0072 Score=50.81 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=30.2
Q ss_pred cCcccchHHHHhhcceeeecccceeeee-cccc-----ccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERC-KSHS-----LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~-~~~~-----~~~g~~ll~~G~p~~g~~ 85 (101)
..=.|||++|.++.-+.|-- ++.-++. +... -.....+|+.||||||||
T Consensus 76 ~~~ViGQe~A~~~l~~av~~-h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT 130 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYN-HYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKT 130 (413)
T ss_pred cceecCHHHHHHHHHHHHHH-HHhhhccccccccccccccCCceEEEECCCCcCHH
Confidence 34479999999998776621 0000111 0011 123567899999999986
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=95.27 E-value=0.009 Score=44.84 Aligned_cols=51 Identities=8% Similarity=-0.121 Sum_probs=32.3
Q ss_pred CCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 26 LKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 26 Lde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
|+=...+....+-||+|.++.-+..+.-.+ . + .....+++.||||||||-.
T Consensus 5 l~~~~~~~~~fd~f~~~~~~~~~~~~~~~~-----~---~---~~~~~l~l~G~~G~GKThL 55 (229)
T PRK06893 5 LPIHQIDDETLDNFYADNNLLLLDSLRKNF-----I---D---LQQPFFYIWGGKSSGKSHL 55 (229)
T ss_pred cCCCCCCcccccccccCChHHHHHHHHHHh-----h---c---cCCCeEEEECCCCCCHHHH
Confidence 343344566778899888876554443222 1 1 1245689999999999843
No 18
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.23 E-value=0.009 Score=37.67 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=19.9
Q ss_pred ccceEEecCCCCCCCCCCceeeeeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
.++.+++.||||||||-....+.+.|
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999997655555444
No 19
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.22 E-value=0.0053 Score=42.75 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=10.6
Q ss_pred eEEecCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKP 85 (101)
Q Consensus 73 ~ll~~G~p~~g~~ 85 (101)
+.|+.||||||||
T Consensus 19 ~~~i~GpPGTGKT 31 (236)
T PF13086_consen 19 ITLIQGPPGTGKT 31 (236)
T ss_dssp -EEEE-STTSSHH
T ss_pred CEEEECCCCCChH
Confidence 6899999999998
No 20
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.17 E-value=0.0065 Score=45.81 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.9
Q ss_pred cccccccceEEecCCCCCCCCCCce
Q psy2779 65 SHSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 65 ~~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+....|+.+|+.|+||||||.|+.
T Consensus 17 ~GG~p~g~~~lI~G~pGsGKT~f~~ 41 (260)
T COG0467 17 GGGLPRGSVVLITGPPGTGKTIFAL 41 (260)
T ss_pred cCCCcCCcEEEEEcCCCCcHHHHHH
Confidence 4677889999999999999998864
No 21
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.90 E-value=0.01 Score=48.97 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=35.1
Q ss_pred CCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCceee
Q psy2779 28 ENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 28 e~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+.-.+.+...-+|||++++.|.-+-.-- .+. |+ +|+.|++||||+-+-.++
T Consensus 8 ~~~~~~~pf~~ivGq~~~k~al~~~~~~----------p~~--~~-vli~G~~GtGKs~~ar~~ 58 (350)
T CHL00081 8 KKERPVFPFTAIVGQEEMKLALILNVID----------PKI--GG-VMIMGDRGTGKSTTIRAL 58 (350)
T ss_pred hccCCCCCHHHHhChHHHHHHHHHhccC----------CCC--Ce-EEEEcCCCCCHHHHHHHH
Confidence 3344566778899999999997654322 232 44 559999999997655443
No 22
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.89 E-value=0.011 Score=48.19 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=27.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+-+|||+.+++|+-+-.-. .+++-+|+.|+||||||
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT 43 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKS 43 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHH
Confidence 45689999999998763221 12345889999999996
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.011 Score=47.34 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=27.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+.+|||+.+.+.. ..+ ++.++. -.++|+.||||||||-
T Consensus 15 ~~~iiGq~~~~~~l---~~~-------~~~~~~--~h~~L~~Gp~G~GKTt 53 (363)
T PRK14961 15 FRDIIGQKHIVTAI---SNG-------LSLGRI--HHAWLLSGTRGVGKTT 53 (363)
T ss_pred hhhccChHHHHHHH---HHH-------HHcCCC--CeEEEEecCCCCCHHH
Confidence 56799999998874 233 222222 3468999999999984
No 24
>PF13245 AAA_19: Part of AAA domain
Probab=94.65 E-value=0.015 Score=37.83 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=13.9
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
..+.+++.||||||||
T Consensus 9 ~~~~~vv~g~pGtGKT 24 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKT 24 (76)
T ss_pred hCCeEEEECCCCCCHH
Confidence 3677888999999998
No 25
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.0097 Score=50.37 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=27.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
-+-+|||+.+.+.. ..+ +++++. ...+|+.||||||||-.
T Consensus 13 ~~divGq~~i~~~L---~~~-------i~~~~l--~~~~Lf~GPpGtGKTTl 52 (472)
T PRK14962 13 FSEVVGQDHVKKLI---INA-------LKKNSI--SHAYIFAGPRGTGKTTV 52 (472)
T ss_pred HHHccCcHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCCHHHH
Confidence 45699999986643 334 333332 34588999999999754
No 26
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.011 Score=47.99 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=27.8
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+. +..+ ++++++ .-++|+.|||||||+.
T Consensus 15 ~~eiiGq~~~~~~---L~~~-------~~~~~~--~ha~lf~Gp~G~GKtt 53 (397)
T PRK14955 15 FADITAQEHITRT---IQNS-------LRMGRV--GHGYIFSGLRGVGKTT 53 (397)
T ss_pred HhhccChHHHHHH---HHHH-------HHhCCc--ceeEEEECCCCCCHHH
Confidence 4678999999874 3444 333332 4568899999999974
No 27
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.43 E-value=0.014 Score=48.78 Aligned_cols=42 Identities=17% Similarity=0.023 Sum_probs=27.1
Q ss_pred cccchHHHHhhcceeeecccceeeeeccc-cccccceEEecCCCCCCCCCC
Q psy2779 38 GLVGQQAAREVSRAVTWEKSFQFERCKSH-SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 38 GlVGQ~~AREAaGIVVdm~~~~~~~~~~~-~~~~g~~ll~~G~p~~g~~~~ 87 (101)
-++||++|.+.. |-.+ +.... ..-.+++|++.|||||||+-+
T Consensus 52 ~~~G~~~~i~~l--v~~l------~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 52 DFFGMEEAIERF--VNYF------KSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred hccCcHHHHHHH--HHHH------HHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 699999986542 2222 22111 122468999999999999754
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.31 E-value=0.018 Score=43.66 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=25.1
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
-+.++||..+++...-.+.- +. -..+|+.||||||||-
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~-----------~~--~~~lll~Gp~GtGKT~ 51 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS-----------PN--LPHLLVQGPPGSGKTA 51 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC-----------CC--CceEEEECCCCCCHHH
Confidence 46689999987764322221 11 1258899999999973
No 29
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.28 E-value=0.012 Score=48.82 Aligned_cols=67 Identities=12% Similarity=-0.022 Sum_probs=37.6
Q ss_pred cccccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 19 SHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 19 SHIkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.|.-+.+.+ .|...-+-+.|.+...+..--.+++--......+....-..+-+|+.||||||||-.
T Consensus 129 ~~~~~~~~~~--~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 129 SSIQLLQMSE--KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred chhhhhcccC--CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHH
Confidence 3344445544 234445568888888877665555400000011111333467788999999999754
No 30
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.018 Score=49.70 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=27.7
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+. +..+ ++++++ +.++|+.||||||||-
T Consensus 17 f~dvVGQe~iv~~---L~~~-------i~~~ri--~ha~Lf~GP~GtGKTT 55 (484)
T PRK14956 17 FRDVIHQDLAIGA---LQNA-------LKSGKI--GHAYIFFGPRGVGKTT 55 (484)
T ss_pred HHHHhChHHHHHH---HHHH-------HHcCCC--CeEEEEECCCCCCHHH
Confidence 4679999999876 2233 333332 4578999999999984
No 31
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.01 E-value=0.0095 Score=46.57 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=28.1
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccc--cccceEEecCCCCCCCCCCc
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSL--FRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~--~~g~~ll~~G~p~~g~~~~~ 88 (101)
+-|||++.+.+..-=++.+-..+-.|.+-+-. ..+.-+|+.||||||||-..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHH
Confidence 46899888888753333320000011110100 02345889999999998643
No 32
>PRK04195 replication factor C large subunit; Provisional
Probab=93.84 E-value=0.019 Score=47.63 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=29.1
Q ss_pred CcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 31 EANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 31 ~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.|.. .+-+|||+++.+..--.++- ++ .+. ..+.+|+.||||||||-
T Consensus 9 rP~~-l~dlvg~~~~~~~l~~~l~~--~~-----~g~--~~~~lLL~GppG~GKTt 54 (482)
T PRK04195 9 RPKT-LSDVVGNEKAKEQLREWIES--WL-----KGK--PKKALLLYGPPGVGKTS 54 (482)
T ss_pred CCCC-HHHhcCCHHHHHHHHHHHHH--Hh-----cCC--CCCeEEEECCCCCCHHH
Confidence 3444 34599999998764322221 11 111 16789999999999983
No 33
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.81 E-value=0.03 Score=40.26 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=19.2
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+.+..|.+.++.||||||||=+.
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 45667899999999999998653
No 34
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.79 E-value=0.019 Score=49.47 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=30.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeec--cccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCK--SHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~--~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-+|||++|.+|+-+-+-- .+...+.. ...-...+-+|+.||||||||.
T Consensus 14 d~~IiGQe~AkkalavAl~~-~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~ 65 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRN-RWRRMQLPEELRDEVTPKNILMIGPTGVGKTE 65 (443)
T ss_pred ccccCCHHHHHHHHHHHHHH-HHHHhcCCcccccccCCceEEEECCCCCCHHH
Confidence 45699999999998765521 00000000 0011124568899999999874
No 35
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.76 E-value=0.025 Score=48.75 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
..++|||+||||||||-
T Consensus 44 ~~~iLlLtGP~G~GKtt 60 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTT 60 (519)
T ss_pred CcceEEEECCCCCCHHH
Confidence 46799999999999874
No 36
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.69 E-value=0.022 Score=42.79 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=21.0
Q ss_pred cccccccceEEecCCCCCCCCCCce
Q psy2779 65 SHSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 65 ~~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+....|..+|+.|+||||||.+..
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~ 39 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQ 39 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHH
Confidence 3466679999999999999998764
No 37
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=93.65 E-value=0.019 Score=49.33 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCceeeeee
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTSMIIDS 94 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~~~~~~ 94 (101)
..++|||+.|.+|...=++| - ..|==+.+.|+|||||.-++.-.+..
T Consensus 7 ~~~~iGQ~RA~~Al~~gl~i-------~-----~~GYNIfv~G~~GtGr~t~v~~~l~~ 53 (509)
T PF13654_consen 7 LEGIIGQERAVEALEFGLGI-------R-----KPGYNIFVMGPPGTGRRTYVRRFLEE 53 (509)
T ss_dssp -----------------------------------------------------------
T ss_pred cccccccccccccccccccc-------c-----cccccccccccccccccccccccccc
Confidence 47999999999999999999 1 13667889999999998877655543
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=93.59 E-value=0.027 Score=44.02 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=25.2
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-+-+|||+++.+..- .+ +++.+ -.-+|+.||||||||
T Consensus 12 l~~~~g~~~~~~~L~---~~-------~~~~~---~~~lll~Gp~G~GKT 48 (319)
T PLN03025 12 LDDIVGNEDAVSRLQ---VI-------ARDGN---MPNLILSGPPGTGKT 48 (319)
T ss_pred HHHhcCcHHHHHHHH---HH-------HhcCC---CceEEEECCCCCCHH
Confidence 466899999887643 22 22222 124789999999998
No 39
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.45 E-value=0.02 Score=47.59 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=29.8
Q ss_pred cccccCcccchHHHHhhcceeeec-ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 32 ANEMAAGLVGQQAAREVSRAVTWE-KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 32 a~~~a~GlVGQ~~AREAaGIVVdm-~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+...-+-++|++++++...=+++. +..+ |.+. ..+ .-+-+|+.||||||||
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~-g~~--~~~giLL~GppGtGKT 102 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKL-GAK--IPKGVLLVGPPGTGKT 102 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhc-CCC--CCCcEEEECCCCCCHH
Confidence 444556789999998776544443 1110 1111 011 1234789999999997
No 40
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.39 E-value=0.039 Score=42.68 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=30.5
Q ss_pred CcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 31 EANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 31 ~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+.+...-|+|+++.-+..--.+.- +.++. ....+++.||||||||-..
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~-------~~~~~--~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRP-------ILRGS--RPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHH-------HHcCC--CCCcEEEECCCCCCHHHHH
Confidence 3445556789998877664332221 11112 2457899999999998544
No 41
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.36 E-value=0.041 Score=42.31 Aligned_cols=28 Identities=7% Similarity=-0.142 Sum_probs=22.1
Q ss_pred cccccccceEEecCCCCCCCCCCceeee
Q psy2779 65 SHSLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 65 ~~~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+....|.+.|+.|+||||||=|....+
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~ 57 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFA 57 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHH
Confidence 3455668899999999999998776543
No 42
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.35 E-value=0.02 Score=37.48 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=11.4
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.++.+++.|+||||||=.
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 367899999999999843
No 43
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.03 Score=47.96 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.5
Q ss_pred CcccchHHHHhhcceeeecccceeeeecccc-----ccccceEEecCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHS-----LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~-----~~~g~~ll~~G~p~~g~~ 85 (101)
+=.|||+.|.++..+-|== .|-|+.+.. -.+.--+|+-||||||||
T Consensus 61 ~YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKT 111 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKT 111 (408)
T ss_pred hheecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHH
Confidence 3468999999998887743 223332211 134455778999999987
No 44
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.23 E-value=0.044 Score=39.76 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=20.2
Q ss_pred ccccccceEEecCCCCCCCCCCcee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+.+..|.++++.|+||||||=+...
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~ 38 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQ 38 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHH
Confidence 4566789999999999999866443
No 45
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.23 E-value=0.032 Score=48.55 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred cccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 32 ANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 32 a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
|..-.+-++||++|.+++-..+.. ++-+|+.||||||||=.
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~l 53 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSML 53 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHH
Confidence 345566789999999987665554 34677999999999843
No 46
>KOG0734|consensus
Probab=93.21 E-value=0.036 Score=50.26 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=41.0
Q ss_pred ccccCCCCCCcccc----cCcccchHHHHhhcceeeecccceeeeecccccc---ccc---eEEecCCCCCCCC
Q psy2779 22 KGLGLKENGEANEM----AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLF---RGG---RAVAGGRTKCPKP 85 (101)
Q Consensus 22 kGLGLde~g~a~~~----a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~---~g~---~ll~~G~p~~g~~ 85 (101)
.++||+..-.+... ..-.-|-.+|+.-..=|||. .|+-.+| +|+ =+|+.||||||||
T Consensus 285 ~~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVef-------LkdP~kftrLGGKLPKGVLLvGPPGTGKT 351 (752)
T KOG0734|consen 285 STTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEF-------LKDPTKFTRLGGKLPKGVLLVGPPGTGKT 351 (752)
T ss_pred cccccccccChhhhcccccccccChHHHHHHHHHHHHH-------hcCcHHhhhccCcCCCceEEeCCCCCchh
Confidence 46777766665543 45567889999999999998 5555444 332 3679999999987
No 47
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.13 E-value=0.029 Score=49.61 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=27.3
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.+||+++.+..--.+.. + +......|..+|+.||||||||-
T Consensus 320 ~~~~G~~~~k~~i~~~~~~------~-~~~~~~~~~~lll~GppG~GKT~ 362 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAV------Q-KLRGKMKGPILCLVGPPGVGKTS 362 (775)
T ss_pred hhcCChHHHHHHHHHHHHH------H-HhhcCCCCceEEEECCCCCCHHH
Confidence 3478999998874322111 0 01122346789999999999974
No 48
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.06 E-value=0.031 Score=42.66 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=28.0
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.+-+|||+..++..- .. +++++. -.++|+.||||+|||-.
T Consensus 19 ~~~~~~~~~~~~~~l~---~~-------~~~~~~--~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 19 TIDECILPAADKETFK---SI-------VKKGRI--PNMLLHSPSPGTGKTTV 59 (316)
T ss_pred cHHHhcCcHHHHHHHH---HH-------HhcCCC--CeEEEeeCcCCCCHHHH
Confidence 4577999999988532 22 222221 35788899999999854
No 49
>KOG0744|consensus
Probab=93.03 E-value=0.049 Score=46.83 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
+.-.|.+|+.||||||||-
T Consensus 174 It~NRliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTS 192 (423)
T ss_pred eeeeeEEEEeCCCCCChhH
Confidence 3347899999999999984
No 50
>KOG1970|consensus
Probab=92.95 E-value=0.055 Score=48.59 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.2
Q ss_pred ccccccceEEecCCCCCCCCC
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+.+++++||++||+||||+-
T Consensus 105 ~~~l~~~iLLltGPsGcGKST 125 (634)
T KOG1970|consen 105 TPKLGSRILLLTGPSGCGKST 125 (634)
T ss_pred ccCCCceEEEEeCCCCCCchh
Confidence 366789999999999999973
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.88 E-value=0.035 Score=42.66 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=26.9
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
-+-+|||+++.+..- .. +++++. ..++|+.||||+|||..
T Consensus 13 ~~~iig~~~~~~~l~---~~-------~~~~~~--~~~~Ll~G~~G~GKt~~ 52 (355)
T TIGR02397 13 FEDVIGQEHIVQTLK---NA-------IKNGRI--AHAYLFSGPRGTGKTSI 52 (355)
T ss_pred HhhccCcHHHHHHHH---HH-------HHcCCC--CeEEEEECCCCCCHHHH
Confidence 345799999987432 22 233332 45789999999999743
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.84 E-value=0.038 Score=51.40 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=28.7
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+. +.++ ++.+++ ..++|+.||||||||-
T Consensus 15 FddIIGQe~Iv~~---Lkna-------I~~~rl--~HAyLFtGPpGtGKTT 53 (944)
T PRK14949 15 FEQMVGQSHVLHA---LTNA-------LTQQRL--HHAYLFTGTRGVGKTS 53 (944)
T ss_pred HHHhcCcHHHHHH---HHHH-------HHhCCC--CeEEEEECCCCCCHHH
Confidence 4679999999887 3344 444443 5677899999999983
No 53
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.75 E-value=0.038 Score=40.42 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=19.4
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+....|..+|+.|+||||||-|.
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCcHHHH
Confidence 45677999999999999998654
No 54
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=92.69 E-value=0.046 Score=47.45 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.6
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.-+|||+.+++|+-+..-- .+ . |. +|+.|+|||||+=
T Consensus 4 ~~ivGq~~~~~al~~~av~----------~~-~-g~-vli~G~~GtgKs~ 40 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVD----------PR-I-GG-VLIRGEKGTAKST 40 (633)
T ss_pred chhcChHHHHHHHHHHhhC----------CC-C-Ce-EEEEcCCCCcHHH
Confidence 4689999999998544322 12 2 33 8899999999963
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.67 E-value=0.036 Score=47.87 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCce
Q psy2779 27 KENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 27 de~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+...|+. -+-+|||+.-----+++-.| ++++.+. -+++-||||||||-..+
T Consensus 15 A~rmRP~~-lde~vGQ~HLlg~~~~lrr~-------v~~~~l~---SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 15 AERLRPKS-LDEVVGQEHLLGEGKPLRRA-------VEAGHLH---SMILWGPPGTGKTTLAR 66 (436)
T ss_pred HHHhCCCC-HHHhcChHhhhCCCchHHHH-------HhcCCCc---eeEEECCCCCCHHHHHH
Confidence 33444444 57799999988778899999 8777753 35689999999986544
No 56
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=92.66 E-value=0.061 Score=46.04 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=29.3
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-++||..|++|..+.+ .+|..+|+.|||||||+=+.
T Consensus 191 ~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtla 228 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLA 228 (499)
T ss_pred HHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHH
Confidence 456899999998865543 24778999999999986543
No 57
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.59 E-value=0.041 Score=40.21 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=20.6
Q ss_pred ccccccceEEecCCCCCCCCCCcee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+..-.|..+++.|+||||||-+...
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~ 39 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLH 39 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHH
Confidence 3556788999999999999987653
No 58
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.57 E-value=0.041 Score=47.92 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred cccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+...+++||+++-+.+.++.- +|+-+|+-||||||||=..
T Consensus 17 ~l~~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 17 ALEKGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHhhhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHH
Confidence 456899999998887766543 4778889999999997443
No 59
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.045 Score=48.53 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=40.1
Q ss_pred CcccchHHHHhhcceeeecccceeeeecccccc-------ccceEEecCCCCCCCC------------CCceeeeeeecc
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLF-------RGGRAVAGGRTKCPKP------------PNTSMIIDSWVE 97 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~-------~g~~ll~~G~p~~g~~------------~~~~~~~~~~~~ 97 (101)
.=.-|..+|+|...=|||- .|+.+++ -.+ +|+.|||||||| ||-|+...++||
T Consensus 150 ~DVAG~dEakeel~EiVdf-------Lk~p~ky~~lGakiPkG-vlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDF-------LKNPKKYQALGAKIPKG-VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHH-------HhCchhhHhcccccccc-eeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 3456889999999988888 6655533 334 458899999976 888888777766
No 60
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.50 E-value=0.053 Score=41.58 Aligned_cols=16 Identities=19% Similarity=0.082 Sum_probs=14.2
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.||||||||
T Consensus 20 ~g~~vLL~G~~GtGKT 35 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKT 35 (262)
T ss_pred cCCeEEEEcCCCCCHH
Confidence 4778899999999997
No 61
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=0.044 Score=46.81 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=27.2
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+-+|||+.+.++.. .+ ++++++ ..++|+.||||||||
T Consensus 15 f~divGq~~v~~~L~---~~-------i~~~~~--~ha~Lf~Gp~G~GKT 52 (527)
T PRK14969 15 FSELVGQEHVVRALT---NA-------LEQQRL--HHAYLFTGTRGVGKT 52 (527)
T ss_pred HHHhcCcHHHHHHHH---HH-------HHcCCC--CEEEEEECCCCCCHH
Confidence 467999999988533 33 223332 457889999999998
No 62
>PRK05973 replicative DNA helicase; Provisional
Probab=92.35 E-value=0.059 Score=42.22 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=20.7
Q ss_pred ccccccceEEecCCCCCCCCCCcee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+.+..|..+|++|+||+|||=|.-.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalq 83 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLE 83 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 4667899999999999999976543
No 63
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.32 E-value=0.05 Score=48.87 Aligned_cols=45 Identities=20% Similarity=0.070 Sum_probs=29.2
Q ss_pred cCcccchHHHHhhcceeeecccceeeee--ccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERC--KSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~--~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-+|||.+|-++.--.+.. .+. .+..+. -+.+|+.||||||||-
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~-----~~~gl~~~~kp-~~~~Lf~GP~GvGKT~ 503 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKM-----SRAGLGHEHKP-VGSFLFAGPTGVGKTE 503 (758)
T ss_pred cceEeCcHHHHHHHHHHHHH-----HhccccCCCCC-cceEEEECCCCCCHHH
Confidence 34589999999876665554 111 111111 2368899999999983
No 64
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=0.061 Score=47.09 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=27.3
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+-+|||+.+.+. +..+ ++++++ ..++|+.||+|||||
T Consensus 12 f~eivGq~~i~~~---L~~~-------i~~~r~--~ha~Lf~Gp~G~GKT 49 (584)
T PRK14952 12 FAEVVGQEHVTEP---LSSA-------LDAGRI--NHAYLFSGPRGCGKT 49 (584)
T ss_pred HHHhcCcHHHHHH---HHHH-------HHcCCC--CeEEEEECCCCCCHH
Confidence 5679999998886 3333 333332 447899999999997
No 65
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.06 E-value=0.072 Score=38.91 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.0
Q ss_pred cccccceEEecCCCCCCCCCCceeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+..|..++++|+||+|||=|..-++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~ 34 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIA 34 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45678899999999999997765443
No 66
>CHL00181 cbbX CbbX; Provisional
Probab=91.97 E-value=0.034 Score=43.81 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=14.6
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
|--+|+.||||||||-...
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4458899999999975433
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.90 E-value=0.052 Score=48.52 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=34.9
Q ss_pred ccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 24 LGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 24 LGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+-|.+...|.. -+.+|||+..-.--.++..+ +++.+ -.-+|+.||||||||-
T Consensus 16 ~PLaek~RP~t-ldd~vGQe~ii~~~~~L~~~-------i~~~~---~~slLL~GPpGtGKTT 67 (725)
T PRK13341 16 APLADRLRPRT-LEEFVGQDHILGEGRLLRRA-------IKADR---VGSLILYGPPGVGKTT 67 (725)
T ss_pred CChHHhcCCCc-HHHhcCcHHHhhhhHHHHHH-------HhcCC---CceEEEECCCCCCHHH
Confidence 34555555544 46799999876555556666 43333 2357899999999984
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.87 E-value=0.06 Score=46.00 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=26.3
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+-+..-- . +.++++ ..++|+.||||||||-
T Consensus 13 ~~dvvGq~~v~~~L~~---~-------i~~~~l--~ha~Lf~GppGtGKTT 51 (504)
T PRK14963 13 FDEVVGQEHVKEVLLA---A-------LRQGRL--GHAYLFSGPRGVGKTT 51 (504)
T ss_pred HHHhcChHHHHHHHHH---H-------HHcCCC--CeEEEEECCCCCCHHH
Confidence 4568999998554322 2 223332 4567999999999984
No 69
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.78 E-value=0.063 Score=44.56 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=28.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
-+-+|||+++.+...=.+.-..-.+-.. ..+ -..++|+.||||+||+.+
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~-~~~--l~ha~Lf~Gp~G~GKt~l 52 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAA-GSG--MTHAWLFTGPPGSGRSVA 52 (394)
T ss_pred hhhccChHHHHHHHHHHHHhcccccccc-CCC--CCeEEEEECCCCCcHHHH
Confidence 3458999999887443333200000000 001 146799999999999743
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=0.061 Score=45.96 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=28.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+.+|||+...++.- .+ ++++++ ..++|+.||||||||-
T Consensus 15 f~divGq~~v~~~L~---~~-------~~~~~l--~ha~Lf~Gp~G~GKTt 53 (509)
T PRK14958 15 FQEVIGQAPVVRALS---NA-------LDQQYL--HHAYLFTGTRGVGKTT 53 (509)
T ss_pred HHHhcCCHHHHHHHH---HH-------HHhCCC--CeeEEEECCCCCCHHH
Confidence 467999999988643 33 233332 4578999999999973
No 71
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=91.77 E-value=0.075 Score=38.70 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=14.9
Q ss_pred cceEEecCCCCCCCCCCceeee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
-.+++++|+|||||+-...+++
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~ 36 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLL 36 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHhh
Confidence 5689999999999964444333
No 72
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.67 E-value=0.059 Score=47.93 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=28.1
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+-+|||+.+.++.- .. ++++++ -.++|+.||||||||-
T Consensus 14 ~f~divGQe~vv~~L~---~~-------l~~~rl--~hAyLf~Gp~GvGKTT 53 (647)
T PRK07994 14 TFAEVVGQEHVLTALA---NA-------LDLGRL--HHAYLFSGTRGVGKTT 53 (647)
T ss_pred CHHHhcCcHHHHHHHH---HH-------HHcCCC--CeEEEEECCCCCCHHH
Confidence 3578999999998543 33 323332 3458899999999973
No 73
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.50 E-value=0.079 Score=38.79 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=16.0
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
..+.+++.||||||||=...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999985443
No 74
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.48 E-value=0.068 Score=45.92 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=27.6
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+-+|||+.+.+..- .. +.+++ -+.++|+.||||||||..
T Consensus 15 ~~eiiGq~~~~~~L~---~~-------i~~~~--i~~a~Lf~Gp~G~GKTtl 54 (585)
T PRK14950 15 FAELVGQEHVVQTLR---NA-------IAEGR--VAHAYLFTGPRGVGKTST 54 (585)
T ss_pred HHHhcCCHHHHHHHH---HH-------HHhCC--CceEEEEECCCCCCHHHH
Confidence 467999999988642 22 22223 256789999999999843
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.42 E-value=0.12 Score=38.99 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=13.8
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
+..+++.||||||||=
T Consensus 45 ~~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 45 SGYIYLWSREGAGRSH 60 (235)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4678999999999984
No 76
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.41 E-value=0.071 Score=39.42 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=21.7
Q ss_pred ccccccceEEecCCCCCCCCCCceeee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
+..-.|.++++.|+||||||.+...++
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHH
Confidence 456678999999999999998765443
No 77
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.38 E-value=0.13 Score=37.17 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=21.4
Q ss_pred ccccccceEEecCCCCCCCCCCceeee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
+....|.+..+.|+||||||-+...++
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHH
Confidence 455678999999999999997765443
No 78
>KOG0731|consensus
Probab=91.35 E-value=0.064 Score=49.05 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=38.2
Q ss_pred cCcccchHHHHhhcceeeec-ccc-eeeeeccccccccceEEecCCCCCCCC------------CCceeeeeeecc
Q psy2779 36 AAGLVGQQAAREVSRAVTWE-KSF-QFERCKSHSLFRGGRAVAGGRTKCPKP------------PNTSMIIDSWVE 97 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm-~~~-~~~~~~~~~~~~g~~ll~~G~p~~g~~------------~~~~~~~~~~~~ 97 (101)
..-..|+++|++-.-=||+. |+- ||.+. +-++-+++| |.|||||||| ||-||.-..+||
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~l--GAKiPkGvL-L~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQEL--GAKIPKGVL-LVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHc--CCcCcCceE-EECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45578999999888777775 110 12221 223344554 8999999997 888877655555
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.34 E-value=0.076 Score=46.21 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=27.9
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.+-+|||+.+.+.. ... +++++. ..++|+.||||||||-.
T Consensus 14 ~f~diiGq~~~v~~L---~~~-------i~~~rl--~ha~Lf~Gp~GvGKTTl 54 (546)
T PRK14957 14 SFAEVAGQQHALNSL---VHA-------LETQKV--HHAYLFTGTRGVGKTTL 54 (546)
T ss_pred cHHHhcCcHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCCHHHH
Confidence 356799999998762 233 322221 34688999999999853
No 80
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.26 E-value=0.092 Score=38.81 Aligned_cols=18 Identities=6% Similarity=-0.164 Sum_probs=15.6
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
++++.+++.||+|+||+.
T Consensus 2 ~~~~~ivl~GpsG~GK~t 19 (186)
T PRK14737 2 ASPKLFIISSVAGGGKST 19 (186)
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 568999999999999863
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.23 E-value=0.08 Score=46.67 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=27.6
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
...+|||+.+.+. +..+ ++++++ .-++|+.||||||||-
T Consensus 15 f~eivGQe~i~~~---L~~~-------i~~~ri--~ha~Lf~Gp~GvGKtt 53 (620)
T PRK14954 15 FADITAQEHITHT---IQNS-------LRMDRV--GHGYIFSGLRGVGKTT 53 (620)
T ss_pred HHHhcCcHHHHHH---HHHH-------HHcCCC--CeeEEEECCCCCCHHH
Confidence 5679999999885 3333 333332 3468899999999974
No 82
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.23 E-value=0.11 Score=38.15 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=18.5
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+....|.++++.|+||+|||=|.
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 34556889999999999998653
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.23 E-value=0.085 Score=47.82 Aligned_cols=40 Identities=18% Similarity=0.078 Sum_probs=29.0
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+-+|||+.+.++. ..+ ++++++ -.++|+.||||||||-
T Consensus 13 tFddVIGQe~vv~~L---~~a-------I~~grl--~HAyLF~GPpGvGKTT 52 (702)
T PRK14960 13 NFNELVGQNHVSRAL---SSA-------LERGRL--HHAYLFTGTRGVGKTT 52 (702)
T ss_pred CHHHhcCcHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCCHHH
Confidence 357799999997764 344 333443 3688999999999984
No 84
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=91.22 E-value=0.11 Score=45.55 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=21.9
Q ss_pred ccceEEecCCCCCCCCCCceeeeeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
.|..||+-|.||||||-||--+.|+.
T Consensus 9 ~G~TLLIKG~PGTGKTtfaLelL~~l 34 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTFALELLNSL 34 (484)
T ss_pred CCcEEEEecCCCCCceeeehhhHHHH
Confidence 48899999999999999986666553
No 85
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.21 E-value=0.068 Score=44.89 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=31.7
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccc---eEEecCCCCCCCCCCc
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGG---RAVAGGRTKCPKPPNT 88 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~---~ll~~G~p~~g~~~~~ 88 (101)
.-+-||||++.++-..|..+- . +.++. -+|+.||||.|||-..
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~A-------A----k~r~e~lDHvLl~GPPGlGKTTLA 69 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKA-------A----KKRGEALDHVLLFGPPGLGKTTLA 69 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHH-------H----HhcCCCcCeEEeeCCCCCcHHHHH
Confidence 357899999999988877655 2 11232 3689999999998543
No 86
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.18 E-value=0.11 Score=37.76 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=21.1
Q ss_pred ccccccceEEecCCCCCCCCCCceee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+....|.+.++.|+||||||-+...+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l 39 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQL 39 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45667999999999999999776544
No 87
>PRK04328 hypothetical protein; Provisional
Probab=91.16 E-value=0.11 Score=39.69 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=19.1
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
....|..+|+.|+||||||-+..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~ 41 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQ 41 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHH
Confidence 45578999999999999987643
No 88
>PRK06526 transposase; Provisional
Probab=91.08 E-value=0.094 Score=40.85 Aligned_cols=17 Identities=18% Similarity=-0.056 Sum_probs=14.0
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+.-+++.||||||||-.
T Consensus 98 ~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 98 KENVVFLGPPGTGKTHL 114 (254)
T ss_pred CceEEEEeCCCCchHHH
Confidence 45689999999999843
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.07 E-value=0.085 Score=45.39 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=26.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+..-- . ++++++ ...+|+.||||||||-
T Consensus 20 f~dliGq~~vv~~L~~---a-------i~~~ri--~~a~Lf~Gp~G~GKTT 58 (507)
T PRK06645 20 FAELQGQEVLVKVLSY---T-------ILNDRL--AGGYLLTGIRGVGKTT 58 (507)
T ss_pred HHHhcCcHHHHHHHHH---H-------HHcCCC--CceEEEECCCCCCHHH
Confidence 4678999998874322 1 222222 3578999999999984
No 90
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.04 E-value=0.064 Score=45.87 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=28.0
Q ss_pred CCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 28 ENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 28 e~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+...+....+-+.|.+.+.+...-..+. |. .+.+...+-..+-+|+.||||||||-
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~--~~-~~~~~~gl~~pkGILL~GPpGTGKTl 274 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTS--FS-KQASNYGLPTPRGLLLVGIQGTGKSL 274 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHH--hh-HHHHhcCCCCCceEEEECCCCCcHHH
Confidence 3333334445566766666544322211 10 01111122234568899999999963
No 91
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.02 E-value=0.11 Score=37.09 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=18.5
Q ss_pred ccceEEecCCCCCCCCCCceeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.|.++++.||+||||+....++.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALL 26 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 58899999999999986554443
No 92
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.96 E-value=0.1 Score=42.48 Aligned_cols=17 Identities=12% Similarity=-0.122 Sum_probs=13.7
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
-+-+|+.||||||||-.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 34588999999999854
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=90.91 E-value=0.11 Score=39.26 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=32.0
Q ss_pred ccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 24 LGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 24 LGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
|-||=...+.++.+.||...+ +.|...+.+. .++..-+.-.-+++.|++|||||=.
T Consensus 6 l~l~~~~~~~~tfdnF~~~~~-~~a~~~~~~~-------~~~~~~~~~~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 6 LPLGVRLRDDATFANYYPGAN-AAALGYVERL-------CEADAGWTESLIYLWGKDGVGRSHL 61 (234)
T ss_pred cccCCCCCCcccccccCcCCh-HHHHHHHHHH-------hhccccCCCCeEEEECCCCCCHHHH
Confidence 455655666677788873333 2343334333 1111111236788999999999844
No 94
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.90 E-value=0.053 Score=46.93 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=26.9
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+.|+..+-+..--.+.+-..+-...+.+.+-..+-+|+.||||||||-
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~ 231 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTL 231 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHH
Confidence 44667776665554443331011011122233334558899999999984
No 95
>KOG0733|consensus
Probab=90.85 E-value=0.089 Score=48.21 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.2
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
-.=+|+.||||||||
T Consensus 545 PsGvLL~GPPGCGKT 559 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKT 559 (802)
T ss_pred CCceEEeCCCCccHH
Confidence 334679999999997
No 96
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.82 E-value=0.12 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.075 Sum_probs=14.4
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 4 ~~~i~l~G~~GsGKstl 20 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTI 20 (175)
T ss_pred CCeEEEEcCCCCCHHHH
Confidence 56889999999999754
No 97
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.78 E-value=0.074 Score=46.47 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=26.7
Q ss_pred CcccchHHHHhhcceeeecccceeee-eccccccccceEEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFER-CKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~-~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+-++|++.+++..-=.+.+ .+++-. .+.-..-..+-+|+.||||||||-
T Consensus 453 ~di~g~~~~k~~l~~~v~~-~~~~~~~~~~~g~~~~~giLL~GppGtGKT~ 502 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEW-PLKHPEIFEKMGIRPPKGVLLFGPPGTGKTL 502 (733)
T ss_pred hhcccHHHHHHHHHHHHHh-hhhCHHHHHhcCCCCCceEEEECCCCCCHHH
Confidence 4467888888776554443 001100 000011123447789999999973
No 98
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.77 E-value=0.12 Score=37.19 Aligned_cols=18 Identities=11% Similarity=-0.136 Sum_probs=14.9
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
.+-+++.||||||||-..
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678899999999997543
No 99
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.75 E-value=0.12 Score=43.37 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=20.7
Q ss_pred ccccccceEEecCCCCCCCCCCcee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+....|+..|+.|+||||||=|...
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~q 40 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQ 40 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHH
Confidence 4667799999999999999876543
No 100
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.69 E-value=0.075 Score=39.98 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=16.0
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
+++.+|++|+||||||-+-
T Consensus 126 ~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH
T ss_pred cceEEEEECCCccccchHH
Confidence 4788999999999998544
No 101
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=0.15 Score=41.76 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=28.6
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
...-+|||+.|.+..- ++ +.++++ .-++|+.||+|+||+.
T Consensus 17 ~~~~iiGq~~~~~~L~---~~-------~~~~rl--~HA~Lf~Gp~G~GK~~ 56 (365)
T PRK07471 17 ETTALFGHAAAEAALL---DA-------YRSGRL--HHAWLIGGPQGIGKAT 56 (365)
T ss_pred chhhccChHHHHHHHH---HH-------HHcCCC--CceEEEECCCCCCHHH
Confidence 3478999999987653 43 333332 4589999999999863
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.61 E-value=0.092 Score=46.79 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=27.9
Q ss_pred cCcccchHHHHhhcceeeecccceeeee--ccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERC--KSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~--~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
..-++||..|.++.--.+.. .|. ...++- -..+|+.||||||||
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~-----~~~gl~~~~~p-~~~~lf~Gp~GvGKt 553 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRR-----ARVGLKNPNRP-IASFLFSGPTGVGKT 553 (821)
T ss_pred cCcCcChHHHHHHHHHHHHH-----HhhcccCCCCC-ceEEEEECCCCCcHH
Confidence 46789999999887544443 111 011111 135789999999998
No 103
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.50 E-value=0.1 Score=45.25 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=27.8
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+.. ... +++++. ..++|+.||||+|||-
T Consensus 15 f~diiGqe~iv~~L---~~~-------i~~~~i--~hayLf~Gp~G~GKTt 53 (563)
T PRK06647 15 FNSLEGQDFVVETL---KHS-------IESNKI--ANAYIFSGPRGVGKTS 53 (563)
T ss_pred HHHccCcHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCCHHH
Confidence 46799999998852 222 333342 4678999999999863
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.49 E-value=0.092 Score=46.57 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=28.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+.+|||+.+.+.. ... ++.++. ..++|+.||||+|||-+
T Consensus 15 F~dIIGQe~iv~~L---~~a-------I~~~rl--~hA~Lf~GP~GvGKTTl 54 (605)
T PRK05896 15 FKQIIGQELIKKIL---VNA-------ILNNKL--THAYIFSGPRGIGKTSI 54 (605)
T ss_pred HHHhcCcHHHHHHH---HHH-------HHcCCC--CceEEEECCCCCCHHHH
Confidence 57899999998653 233 333332 37899999999999854
No 105
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=90.39 E-value=0.11 Score=40.83 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=24.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
...++|++.+-+++-+- +..|+-+|+-|+||||||
T Consensus 23 ~~~~~g~~~~~~~~l~a---------------~~~~~~vll~G~PG~gKT 57 (329)
T COG0714 23 EKVVVGDEEVIELALLA---------------LLAGGHVLLEGPPGVGKT 57 (329)
T ss_pred CCeeeccHHHHHHHHHH---------------HHcCCCEEEECCCCccHH
Confidence 34477776665554322 235888999999999997
No 106
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.39 E-value=0.089 Score=47.68 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=28.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+.. .++ ++++++ ..++|+.|++|+|||-
T Consensus 15 FddVIGQe~vv~~L---~~a-------l~~gRL--pHA~LFtGP~GvGKTT 53 (700)
T PRK12323 15 FTTLVGQEHVVRAL---THA-------LEQQRL--HHAYLFTGTRGVGKTT 53 (700)
T ss_pred HHHHcCcHHHHHHH---HHH-------HHhCCC--ceEEEEECCCCCCHHH
Confidence 56799999998843 344 334443 4578999999999984
No 107
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.34 E-value=0.15 Score=37.31 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=18.9
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+....|.+.++.|+||+|||-+.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 34556889999999999998764
No 108
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.33 E-value=0.1 Score=39.13 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=27.0
Q ss_pred CCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 30 GEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 30 g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.. -+-++||.++-+... +. ++.++ -..+|+.||||||||-.
T Consensus 11 yrP~~-~~~~~g~~~~~~~l~---~~-------i~~~~---~~~~ll~G~~G~GKt~~ 54 (319)
T PRK00440 11 YRPRT-LDEIVGQEEIVERLK---SY-------VKEKN---MPHLLFAGPPGTGKTTA 54 (319)
T ss_pred hCCCc-HHHhcCcHHHHHHHH---HH-------HhCCC---CCeEEEECCCCCCHHHH
Confidence 34433 345899988776633 33 22222 12479999999999743
No 109
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=90.33 E-value=0.1 Score=46.16 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred ccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
...-+-++||++|-++.-..++. ++-+|+.||||||||-.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttl 66 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSML 66 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHH
Confidence 34567799999998876554443 34688999999999743
No 110
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=0.11 Score=44.72 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=28.3
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+-+|||+.+.+... +. ++++++ -.++|+.||||+|||-
T Consensus 11 ~f~dliGQe~vv~~L~---~a-------~~~~ri--~ha~Lf~Gp~G~GKTT 50 (491)
T PRK14964 11 SFKDLVGQDVLVRILR---NA-------FTLNKI--PQSILLVGASGVGKTT 50 (491)
T ss_pred CHHHhcCcHHHHHHHH---HH-------HHcCCC--CceEEEECCCCccHHH
Confidence 3578999999887543 33 223332 3578999999999974
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.26 E-value=0.12 Score=41.04 Aligned_cols=62 Identities=19% Similarity=0.124 Sum_probs=31.3
Q ss_pred cccccCCCCCCcccccCcccchHHHHhhcceeeec--ccce-eeeeccccccccceEEecCCCCCCCCCC
Q psy2779 21 VKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWE--KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 21 IkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm--~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.++-+.+. +...-+-+.|.+++.+..--.++. +.-. |..+ ..-..+-+|+.||||||||-.
T Consensus 108 ~~~~~~~~~--p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~---g~~~p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 108 VKGMEVEER--PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEV---GIEPPKGVLLYGPPGTGKTLL 172 (364)
T ss_pred cccceeccC--CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhc---CCCCCceEEEECCCCCCHHHH
Confidence 344444433 334445678877776555433322 0000 0001 111234588999999999743
No 112
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.13 E-value=0.14 Score=37.06 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+++.||||||||-+
T Consensus 24 ~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 24 ARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 588999999999999744
No 113
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.08 E-value=0.14 Score=37.82 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=26.1
Q ss_pred ccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
......|.-...-++|...+..- + ..+.+.+++.||||+|||-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~-------~----~~~~~~~~l~G~~G~GKTt 58 (269)
T TIGR03015 16 LPDPDFFYPSKGHKRAMAYLEYG-------L----SQREGFILITGEVGAGKTT 58 (269)
T ss_pred CCCHHHhCCCHHHHHHHHHHHHH-------H----hcCCCEEEEEcCCCCCHHH
Confidence 33344555555555655544332 1 1135688999999999974
No 114
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.01 E-value=0.16 Score=39.44 Aligned_cols=24 Identities=8% Similarity=-0.133 Sum_probs=19.3
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.+..|.+.++.|+||||||-|.-
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHH
Confidence 345568899999999999998744
No 115
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.01 E-value=0.12 Score=44.51 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=27.3
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+-+|||+...+..- +. +++++. ..++|+.||||||||-.
T Consensus 15 f~~viGq~~v~~~L~---~~-------i~~~~~--~hayLf~Gp~GtGKTt~ 54 (559)
T PRK05563 15 FEDVVGQEHITKTLK---NA-------IKQGKI--SHAYLFSGPRGTGKTSA 54 (559)
T ss_pred HHhccCcHHHHHHHH---HH-------HHcCCC--CeEEEEECCCCCCHHHH
Confidence 567999999766432 22 222332 57889999999999743
No 116
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.95 E-value=0.15 Score=37.73 Aligned_cols=19 Identities=16% Similarity=0.010 Sum_probs=16.0
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
..++.+++.||+||||+-.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl 29 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAV 29 (206)
T ss_pred CCCeEEEEECcCCCCHHHH
Confidence 4688999999999998753
No 117
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=89.91 E-value=0.18 Score=41.15 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=30.4
Q ss_pred cCcccchHHHHhhccee-eecccceeeeeccccccccceEEecCCCCCCCCCCceeeeeee
Q psy2779 36 AAGLVGQQAAREVSRAV-TWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIV-Vdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
.+-+|||+++.+|.-+. |+= +.+-+|+.|+||+||+-.-..+-..|
T Consensus 3 f~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999996432 221 13446699999999975544443333
No 118
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.89 E-value=0.12 Score=42.14 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=27.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-++||++|.+..--.+.- ++ .-.++|+.||+|+||+-+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~----------gr--l~ha~L~~G~~G~GKttl 61 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYRE----------GK--LHHALLFEGPEGIGKATL 61 (351)
T ss_pred hhhccCcHHHHHHHHHHHHc----------CC--CCeeEeeECCCCCCHHHH
Confidence 46799999998765332222 22 123799999999998744
No 119
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.88 E-value=0.1 Score=45.88 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=27.7
Q ss_pred ccCcccchHHHHhhcceeeecccceeeee--ccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERC--KSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~--~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-...++||.+|-++.--.+.. .|. .+..+ -...+|+.||||||||
T Consensus 452 l~~~v~GQ~~ai~~l~~~i~~-----~~~g~~~~~~-p~~~~lf~Gp~GvGKT 498 (731)
T TIGR02639 452 LKAKIFGQDEAIDSLVSSIKR-----SRAGLGNPNK-PVGSFLFTGPTGVGKT 498 (731)
T ss_pred HhcceeCcHHHHHHHHHHHHH-----HhcCCCCCCC-CceeEEEECCCCccHH
Confidence 356789999998874333222 111 11111 1235789999999998
No 120
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=0.12 Score=42.52 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=13.2
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
..+-+|+.||||||||
T Consensus 275 ~~~giLl~GpPGtGKT 290 (494)
T COG0464 275 PPKGVLLYGPPGTGKT 290 (494)
T ss_pred CCCeeEEECCCCCCHH
Confidence 3457889999999986
No 121
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.55 E-value=0.21 Score=39.19 Aligned_cols=24 Identities=8% Similarity=-0.151 Sum_probs=19.4
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+....|.+.++.|+||||||-+.-
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHH
Confidence 345568899999999999997654
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=89.46 E-value=0.14 Score=46.64 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+.+|||+.+.+. +..+ ++++++ ..++|+.||+|||||
T Consensus 14 f~eiiGqe~v~~~---L~~~-------i~~~ri--~Ha~Lf~Gp~G~GKT 51 (824)
T PRK07764 14 FAEVIGQEHVTEP---LSTA-------LDSGRI--NHAYLFSGPRGCGKT 51 (824)
T ss_pred HHHhcCcHHHHHH---HHHH-------HHhCCC--CceEEEECCCCCCHH
Confidence 5679999998876 3333 333332 467899999999997
No 123
>PRK12377 putative replication protein; Provisional
Probab=89.40 E-value=0.12 Score=40.42 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=23.0
Q ss_pred chHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 41 GQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 41 GQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
||..|..+|.-+++- |. . ...-+++.|+||||||=
T Consensus 82 ~~~~a~~~a~~~a~~----~~---~----~~~~l~l~G~~GtGKTh 116 (248)
T PRK12377 82 GQRYALSQAKSIADE----LM---T----GCTNFVFSGKPGTGKNH 116 (248)
T ss_pred hHHHHHHHHHHHHHH----HH---h----cCCeEEEECCCCCCHHH
Confidence 566666666655554 11 1 13568899999999974
No 124
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.36 E-value=0.15 Score=40.17 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=26.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-+-+|||+.+.+.. .+. +++++. -..+|+.||||+|||
T Consensus 16 ~~~iig~~~~~~~l---~~~-------i~~~~~--~~~~L~~G~~G~GKt 53 (367)
T PRK14970 16 FDDVVGQSHITNTL---LNA-------IENNHL--AQALLFCGPRGVGKT 53 (367)
T ss_pred HHhcCCcHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCCHH
Confidence 46789999987653 222 233332 357889999999986
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.12 E-value=0.15 Score=42.68 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=26.7
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+-+|||+.+-+. +.+. ++.++. ..++|+.||||+||+-
T Consensus 15 ~~~diiGq~~~v~~---L~~~-------i~~~~i--~ha~Lf~Gp~G~GKtt 54 (451)
T PRK06305 15 TFSEILGQDAVVAV---LKNA-------LRFNRA--AHAYLFSGIRGTGKTT 54 (451)
T ss_pred CHHHhcCcHHHHHH---HHHH-------HHcCCC--ceEEEEEcCCCCCHHH
Confidence 35678999988652 2333 222332 4678899999999974
No 126
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.03 E-value=0.1 Score=44.23 Aligned_cols=20 Identities=10% Similarity=-0.105 Sum_probs=15.5
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
....+.+|+.||||||||-.
T Consensus 214 i~~p~gVLL~GPPGTGKT~L 233 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLL 233 (438)
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 33466788999999999754
No 127
>PRK14527 adenylate kinase; Provisional
Probab=89.01 E-value=0.19 Score=36.10 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=16.4
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+.++++.|+|||||+-+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~ 24 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAE 24 (191)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36789999999999986544
No 128
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.98 E-value=0.15 Score=45.27 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=29.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCcee
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+.++||++.-+..--+++- .......++++++.||||||||-...+
T Consensus 83 ldel~~~~~ki~~l~~~l~~--------~~~~~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKA--------QVLENAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHh--------cccccCCCcEEEEECCCCCCHHHHHHH
Confidence 56799999765542221111 011123578899999999999865443
No 129
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.98 E-value=0.18 Score=40.38 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=16.9
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.++.+|++||||||||-+-..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 478899999999999855443
No 130
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.96 E-value=0.16 Score=45.94 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=27.8
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+...-. ++++++ ...+|+.||||||||-
T Consensus 15 FddIIGQe~vv~~L~~a----------i~~~rl--~Ha~Lf~GP~GvGKTT 53 (709)
T PRK08691 15 FADLVGQEHVVKALQNA----------LDEGRL--HHAYLLTGTRGVGKTT 53 (709)
T ss_pred HHHHcCcHHHHHHHHHH----------HHcCCC--CeEEEEECCCCCcHHH
Confidence 56799999998854332 222332 4578999999999984
No 131
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=88.93 E-value=0.046 Score=39.97 Aligned_cols=51 Identities=25% Similarity=0.173 Sum_probs=33.4
Q ss_pred ccCcccchHHHHhhcceeeec-ccceeeeeccccccccceEE--ecCCCCCCCCCCceeeeee
Q psy2779 35 MAAGLVGQQAAREVSRAVTWE-KSFQFERCKSHSLFRGGRAV--AGGRTKCPKPPNTSMIIDS 94 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm-~~~~~~~~~~~~~~~g~~ll--~~G~p~~g~~~~~~~~~~~ 94 (101)
-..-+.||..|.+. |++. +.|. .+. -..+.|+ +-|+|||||+=.++||.++
T Consensus 23 L~~~l~GQhla~~~---v~~ai~~~l----~~~--~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 23 LQRNLFGQHLAVEV---VVNAIKGHL----ANP--NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHccCcHHHHHH---HHHHHHHHH----cCC--CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34568999999886 4444 1111 111 1334444 7899999999888888766
No 132
>KOG0727|consensus
Probab=88.92 E-value=0.28 Score=41.73 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=35.8
Q ss_pred cccccccCCCCCCcccccC-cccch-HHHHhhcceeeecccce-eeeeccccccccceEEecCCCCCCCCC
Q psy2779 19 SHVKGLGLKENGEANEMAA-GLVGQ-QAAREVSRAVTWEKSFQ-FERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 19 SHIkGLGLde~g~a~~~a~-GlVGQ-~~AREAaGIVVdm~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
|.|-=|+-|+.-...+..- |+==| .+-|||..+-+-- ++ |.++ .+---|-+|+-||||||||-
T Consensus 139 ssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~--~~ly~qi---gidpprgvllygppg~gktm 204 (408)
T KOG0727|consen 139 SSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTH--ADLYKQI---GIDPPRGVLLYGPPGTGKTM 204 (408)
T ss_pred ccccccCCCCCCCccccccccchhhHHHHHHHHhccchH--HHHHHHh---CCCCCcceEEeCCCCCcHHH
Confidence 3344555555544444332 34333 4679997765421 11 2233 44445668899999999973
No 133
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.76 E-value=0.16 Score=43.65 Aligned_cols=17 Identities=12% Similarity=-0.322 Sum_probs=14.3
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
-+.|++-||||||||=+
T Consensus 148 PlgllL~GPPGcGKTll 164 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQ 164 (413)
T ss_pred CeEEEeeCCCCCCHHHH
Confidence 56789999999999743
No 134
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.62 E-value=0.16 Score=43.24 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=26.6
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+-+|||+.+.+.. .+. +++++. ..++|+.||||+|||
T Consensus 15 f~diiGq~~i~~~L---~~~-------i~~~~i--~hayLf~Gp~G~GKT 52 (486)
T PRK14953 15 FKEVIGQEIVVRIL---KNA-------VKLQRV--SHAYIFAGPRGTGKT 52 (486)
T ss_pred HHHccChHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCCHH
Confidence 46789999988743 344 333332 457789999999994
No 135
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.56 E-value=0.14 Score=45.35 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=27.8
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+-+|||+.+.++. .++ ++++++ -.++|+.|++|||||-
T Consensus 14 ~f~dviGQe~vv~~L---~~~-------l~~~rl--~ha~Lf~Gp~GvGKTt 53 (618)
T PRK14951 14 SFSEMVGQEHVVQAL---TNA-------LTQQRL--HHAYLFTGTRGVGKTT 53 (618)
T ss_pred CHHHhcCcHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCCHHH
Confidence 357799999988743 333 333332 4568999999999973
No 136
>PRK06620 hypothetical protein; Validated
Probab=88.50 E-value=0.19 Score=37.89 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=13.4
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
+.+++.||||||||=.
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999843
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.44 E-value=0.17 Score=45.88 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=29.2
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeecccccc---ccceEEecCCCCCCCCCCc
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLF---RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~---~g~~ll~~G~p~~g~~~~~ 88 (101)
-..-++||..|-++.--.+.. ++++-.- .-+.+|+.||||+|||-..
T Consensus 564 L~~~v~GQ~~Av~~v~~~i~~-------~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 564 LAERVIGQDHALEAIAERIRT-------ARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred hcCeEcChHHHHHHHHHHHHH-------HhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 345789999998865433332 2211100 1236899999999998544
No 138
>KOG2028|consensus
Probab=88.40 E-value=0.12 Score=45.38 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=44.6
Q ss_pred cccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 21 VKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 21 IkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
|.++=|.|...|+. -+-.|||.++----|++-.+ ++++.+ --+++-||||||||-.
T Consensus 123 ~qh~PLaermRPkt-L~dyvGQ~hlv~q~gllrs~-------ieq~~i---pSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 123 LQHKPLAERMRPKT-LDDYVGQSHLVGQDGLLRSL-------IEQNRI---PSMILWGPPGTGKTTL 178 (554)
T ss_pred hccCChhhhcCcch-HHHhcchhhhcCcchHHHHH-------HHcCCC---CceEEecCCCCchHHH
Confidence 36778888888876 57799999988878888888 766664 3467999999999854
No 139
>CHL00176 ftsH cell division protein; Validated
Probab=88.19 E-value=0.16 Score=44.87 Aligned_cols=45 Identities=18% Similarity=0.055 Sum_probs=29.2
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeecccccc------ccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLF------RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~------~g~~ll~~G~p~~g~~~ 86 (101)
..+-++|++++.+...-+++. .+....+ --+-+|+.||||||||-
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~-------lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~ 231 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSF-------LKKPERFTAVGAKIPKGVLLVGPPGTGKTL 231 (638)
T ss_pred CHHhccChHHHHHHHHHHHHH-------HhCHHHHhhccCCCCceEEEECCCCCCHHH
Confidence 445688998888877666655 2211110 12348899999999974
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=88.09 E-value=0.18 Score=43.91 Aligned_cols=41 Identities=17% Similarity=0.074 Sum_probs=27.5
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+.+-+|||..+.+++ ++. +.+. ....+++.||||||||-..
T Consensus 152 ~~~~iiGqs~~~~~l---~~~-------ia~~---~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 152 AFSEIVGQERAIKAL---LAK-------VASP---FPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cHHhceeCcHHHHHH---HHH-------HhcC---CCCeEEEECCCCCCHHHHH
Confidence 345689999998863 233 2221 2345889999999997543
No 141
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.03 E-value=0.18 Score=39.51 Aligned_cols=17 Identities=18% Similarity=0.138 Sum_probs=14.7
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..++-+|+.||||||||
T Consensus 31 ~~~~pvLl~G~~GtGKT 47 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKT 47 (272)
T ss_dssp HCTEEEEEESSTTSSHH
T ss_pred HcCCcEEEECCCCCchh
Confidence 35788999999999986
No 142
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=0.2 Score=43.08 Aligned_cols=61 Identities=21% Similarity=0.131 Sum_probs=36.6
Q ss_pred cccccCCCCCCccccc-Ccccch-HHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 21 VKGLGLKENGEANEMA-AGLVGQ-QAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 21 IkGLGLde~g~a~~~a-~GlVGQ-~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+..+.+++.-+..|.. .|+==| ++-|||.-+-+.- .--|.++ .+---+=+|+.||||||||
T Consensus 137 V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~-PElF~~~---GI~PPKGVLLYGPPGTGKT 199 (406)
T COG1222 137 VSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKN-PELFEEL---GIDPPKGVLLYGPPGTGKT 199 (406)
T ss_pred hheeeeccCCCCChhhccCHHHHHHHHHHHhcccccC-HHHHHHc---CCCCCCceEeeCCCCCcHH
Confidence 5566666665554432 345445 4578887665532 1224444 4434455779999999998
No 143
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.89 E-value=0.24 Score=38.80 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=28.7
Q ss_pred cccccCcccchHHHHhhcceee-ecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 32 ANEMAAGLVGQQAAREVSRAVT-WEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 32 a~~~a~GlVGQ~~AREAaGIVV-dm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+.+...-|+|.++-.+...-.+ +. ++. . ....+++.||||||||-..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~-------~~~-~--~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPA-------LRG-S--RPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHH-------hCC-C--CCCeEEEECCCCCCHHHHH
Confidence 3345566888887766533222 32 211 1 2456889999999998543
No 144
>KOG0730|consensus
Probab=87.87 E-value=0.22 Score=45.33 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=26.4
Q ss_pred chHHHHhhcceeeecc---cceeeeeccccccccceEEecCCCCCCCC
Q psy2779 41 GQQAAREVSRAVTWEK---SFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 41 GQ~~AREAaGIVVdm~---~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
||++-++...--|.+- +-.|.|. .+-.-+-+|+.||||||||
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~---Gi~ppkGVLlyGPPGC~KT 482 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARF---GISPPKGVLLYGPPGCGKT 482 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHh---cCCCCceEEEECCCCcchH
Confidence 4666666655322221 2235666 4445677889999999987
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=87.85 E-value=0.19 Score=41.56 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.5
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..++-+|+.|+||||||
T Consensus 62 ~~~~~ilL~G~pGtGKT 78 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKS 78 (327)
T ss_pred hcCCcEEEEeCCCChHH
Confidence 34778999999999987
No 146
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.83 E-value=0.29 Score=37.10 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.7
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-.|..+++.|+||||||-+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSIL 40 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHH
Confidence 344588999999999999876
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.66 E-value=0.18 Score=45.59 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=28.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeecccccccc---ceEEecCCCCCCCCCCc
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRG---GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g---~~ll~~G~p~~g~~~~~ 88 (101)
..-++||..|-++.---+.. ++.+-.-.. ..+|+.||||||||-..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~-------~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHH-------HHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 45689999997764333322 321111011 37889999999998544
No 148
>KOG0733|consensus
Probab=87.60 E-value=0.22 Score=45.77 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.4
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
-|=+|+-||||||||
T Consensus 223 prGvLlHGPPGCGKT 237 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKT 237 (802)
T ss_pred CCceeeeCCCCccHH
Confidence 345779999999987
No 149
>PRK09183 transposase/IS protein; Provisional
Probab=87.59 E-value=0.26 Score=38.14 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=15.3
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|..+++.||||||||=..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 3677889999999998543
No 150
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.44 E-value=0.24 Score=44.92 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=27.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+.+|||+.+.+.. ... +++++. ..+.|+.||||+|||.
T Consensus 17 f~dIiGQe~~v~~L---~~a-------I~~~rl--~HAYLF~GP~GtGKTt 55 (725)
T PRK07133 17 FDDIVGQDHIVQTL---KNI-------IKSNKI--SHAYLFSGPRGTGKTS 55 (725)
T ss_pred HHHhcCcHHHHHHH---HHH-------HHcCCC--CeEEEEECCCCCcHHH
Confidence 46799999987642 233 333332 4677899999999973
No 151
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=87.44 E-value=0.23 Score=33.44 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=13.8
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||+|||
T Consensus 13 ~~~~~li~aptGsGKT 28 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKT 28 (169)
T ss_dssp TTSEEEEECSTTSSHH
T ss_pred cCCCEEEECCCCCccH
Confidence 4667889999999997
No 152
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.39 E-value=0.25 Score=40.46 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.4
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.++.+|++||||||||-.
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 478999999999999743
No 153
>PRK05541 adenylylsulfate kinase; Provisional
Probab=87.35 E-value=0.28 Score=34.55 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=15.7
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|..+++.|+|||||+-..
T Consensus 6 ~~~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIA 24 (176)
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4779999999999996443
No 154
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.26 E-value=0.3 Score=38.03 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=18.1
Q ss_pred ccceEEecCCCCCCCCCCceeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.++.+|++|+||||||-+...++
T Consensus 79 ~~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 36789999999999987665443
No 155
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=87.20 E-value=0.3 Score=39.15 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=20.2
Q ss_pred ccccccceEEecCCCCCCCCCCcee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+..-.|.++++.||||||||.+.-.
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~ 115 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHT 115 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHH
Confidence 3455688999999999999987644
No 156
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.16 E-value=0.047 Score=38.33 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.5
Q ss_pred ccceEEecCCCCCCCCCCceeeeeeecc
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIIDSWVE 97 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~~~~~ 97 (101)
.|...+++|+||+|||=+..-++-+|..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999887666555544
No 157
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.08 E-value=0.25 Score=43.36 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=30.4
Q ss_pred CCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 28 ENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 28 e~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+...|. +.+.+|||+.+.+.. ..+ ++++++ -.++|+.||+|+|||-
T Consensus 16 ~KyRP~-~f~dliGq~~~v~~L---~~~-------~~~gri--~ha~L~~Gp~GvGKTt 61 (598)
T PRK09111 16 RKYRPQ-TFDDLIGQEAMVRTL---TNA-------FETGRI--AQAFMLTGVRGVGKTT 61 (598)
T ss_pred hhhCCC-CHHHhcCcHHHHHHH---HHH-------HHcCCC--CceEEEECCCCCCHHH
Confidence 334443 457899999988763 233 223332 3478899999999974
No 158
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.07 E-value=0.27 Score=36.68 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=21.7
Q ss_pred ccccccceEEecCCCCCCCCCCceeee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
+....|...+++|+||+|||=+...+.
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~ 51 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYA 51 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 467778999999999999997665443
No 159
>KOG0991|consensus
Probab=87.03 E-value=0.3 Score=40.92 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=25.4
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+-+||-|+.-+-..++..- +.+ --++++||||||||-
T Consensus 27 ~dIVGNe~tv~rl~via~~----------gnm---P~liisGpPG~GKTT 63 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE----------GNM---PNLIISGPPGTGKTT 63 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc----------CCC---CceEeeCCCCCchhh
Confidence 5678888876665554332 332 347899999999983
No 160
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.99 E-value=0.24 Score=37.11 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=13.2
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
++|+.||||+||+..
T Consensus 26 alL~~Gp~G~Gktt~ 40 (325)
T COG0470 26 ALLFYGPPGVGKTTA 40 (325)
T ss_pred eeeeeCCCCCCHHHH
Confidence 799999999999753
No 161
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=86.76 E-value=0.26 Score=30.71 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=12.0
Q ss_pred EEecCCCCCCCCCCc
Q psy2779 74 AVAGGRTKCPKPPNT 88 (101)
Q Consensus 74 ll~~G~p~~g~~~~~ 88 (101)
+.+.|+|||||+-+.
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999997543
No 162
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=86.64 E-value=0.26 Score=45.60 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=27.6
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||++..+..- +. ++++++ ..++|+.|++|||||-
T Consensus 15 FdEVIGQe~Vv~~L~---~a-------L~~gRL--~HAyLFtGPpGvGKTT 53 (830)
T PRK07003 15 FASLVGQEHVVRALT---HA-------LDGGRL--HHAYLFTGTRGVGKTT 53 (830)
T ss_pred HHHHcCcHHHHHHHH---HH-------HhcCCC--CeEEEEECCCCCCHHH
Confidence 577999999988543 22 222232 4578899999999984
No 163
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=86.55 E-value=0.26 Score=32.76 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=16.4
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|..+.+.|++||||+-+
T Consensus 8 i~~g~~~~i~G~nGsGKStL 27 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTL 27 (137)
T ss_dssp EETTSEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEEccCCCccccc
Confidence 34688999999999998643
No 164
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.43 E-value=0.27 Score=42.49 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=26.9
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+..-=. +++++. ..++|+.||||+|||-
T Consensus 15 f~~iiGq~~v~~~L~~~----------i~~~~~--~hayLf~Gp~G~GKtt 53 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNA----------IDTGRV--AHAFLFTGARGVGKTS 53 (576)
T ss_pred HHHccCcHHHHHHHHHH----------HHcCCC--CeEEEEECCCCCCHHH
Confidence 56799999987665322 222332 4567899999999863
No 165
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.41 E-value=0.35 Score=40.52 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.6
Q ss_pred cccccccceEEecCCCCCCCCCCcee
Q psy2779 65 SHSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 65 ~~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+.+..|.++|+.||||+|||-+...
T Consensus 257 gGG~~~gs~~li~G~~G~GKt~l~~~ 282 (484)
T TIGR02655 257 GGGFFKDSIILATGATGTGKTLLVSK 282 (484)
T ss_pred cCCccCCcEEEEECCCCCCHHHHHHH
Confidence 34667788999999999999865443
No 166
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.35 E-value=0.32 Score=34.20 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=16.1
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|.++++.|.|||||+-..
T Consensus 3 ~g~~i~~~G~~GsGKST~a 21 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIA 21 (175)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3779999999999998754
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.30 E-value=0.23 Score=44.60 Aligned_cols=43 Identities=21% Similarity=0.087 Sum_probs=27.8
Q ss_pred cCcccchHHHHhhcceeeecccceeeeecccccc---ccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLF---RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~---~g~~ll~~G~p~~g~~ 85 (101)
..-++||..|-++.--.+.. +..+-.- -...+|+.||||||||
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~-------~~~gl~~~~~p~~~~Lf~Gp~GvGKt 609 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKT 609 (852)
T ss_pred hcccCCChHHHHHHHHHHHH-------HhccCCCCCCCCeEEEEEcCCCCCHH
Confidence 45689999998876544443 2111000 1346889999999987
No 168
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.27 E-value=0.26 Score=40.46 Aligned_cols=51 Identities=10% Similarity=-0.130 Sum_probs=27.4
Q ss_pred CCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 29 NGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 29 ~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
...+.++.+-||--..-+.|...+..+ .+.-. -...-+++.||||||||=.
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~-------~~~~~-~~~~~l~l~G~~G~GKThL 164 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAV-------AENPG-KAYNPLFIYGGVGLGKTHL 164 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHH-------HhCcC-ccCCeEEEECCCCCCHHHH
Confidence 344555666655333333344444443 21111 0135689999999999843
No 169
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=86.25 E-value=0.35 Score=40.31 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=19.4
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
..-.|..+|+.|+||||||-|..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~ 49 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFAL 49 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 45579999999999999997754
No 170
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.08 E-value=0.35 Score=39.56 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=20.1
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+..-.|++.++.||||||||-+.-
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL 73 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLAL 73 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHH
Confidence 466778999999999999987643
No 171
>PRK08181 transposase; Validated
Probab=85.96 E-value=0.37 Score=38.13 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=13.5
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
+.-+++.||||||||=
T Consensus 106 ~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 106 GANLLLFGPPGGGKSH 121 (269)
T ss_pred CceEEEEecCCCcHHH
Confidence 4558999999999983
No 172
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=85.91 E-value=0.54 Score=37.83 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=19.3
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+..-.|.+.++.||||||||-+.
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHH
Confidence 45566789999999999999765
No 173
>PRK09862 putative ATP-dependent protease; Provisional
Probab=85.83 E-value=0.52 Score=40.85 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=26.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..=..||..+.++.-+- ..+|..+++.|+|||||+=
T Consensus 190 ~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTt 225 (506)
T PRK09862 190 LSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTM 225 (506)
T ss_pred eEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHH
Confidence 34467999888884322 2258899999999999863
No 174
>PRK05480 uridine/cytidine kinase; Provisional
Probab=85.81 E-value=0.35 Score=35.05 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=17.0
Q ss_pred ccceEEecCCCCCCCCCCceee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.+.++.++|++|||||-++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l 26 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTI 26 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3668899999999998655443
No 175
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=85.76 E-value=0.27 Score=36.23 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
.+..++.|+||||||-.
T Consensus 18 ~~~~~l~G~aGtGKT~~ 34 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTL 34 (196)
T ss_dssp CSEEEEEESTTSTHHHH
T ss_pred CeEEEEEECCCCCHHHH
Confidence 57889999999999843
No 176
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.74 E-value=0.28 Score=33.06 Aligned_cols=18 Identities=17% Similarity=0.040 Sum_probs=14.7
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
.+.+|+.+|||||||---
T Consensus 25 ~~~~ll~~~tGsGKT~~~ 42 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIA 42 (184)
T ss_dssp CSEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcChhh
Confidence 577889999999998543
No 177
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=85.74 E-value=0.38 Score=38.22 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=17.5
Q ss_pred ccceEEecCCCCCCCCCCceeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.++.+|++|+||||||-+...++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~ 153 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALL 153 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHH
Confidence 46678899999999986654443
No 178
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=85.70 E-value=0.41 Score=39.21 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=19.5
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+..-.|.+.++.|+||||||.+.-
T Consensus 118 GG~~~g~i~~i~G~~g~GKT~l~~ 141 (342)
T PLN03186 118 GGIETGSITEIYGEFRTGKTQLCH 141 (342)
T ss_pred CCCcCceEEEEECCCCCCccHHHH
Confidence 345567899999999999998763
No 179
>PRK08356 hypothetical protein; Provisional
Probab=85.65 E-value=0.35 Score=35.11 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=12.5
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
.+++++|||||||+-
T Consensus 6 ~~i~~~G~~gsGK~t 20 (195)
T PRK08356 6 MIVGVVGKIAAGKTT 20 (195)
T ss_pred EEEEEECCCCCCHHH
Confidence 367899999999864
No 180
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=85.64 E-value=0.33 Score=35.46 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.7
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|.++.+.|++|||||-+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred CeEEEEEECCCCCCHHHHH
Confidence 3788999999999998544
No 181
>KOG0738|consensus
Probab=85.58 E-value=0.34 Score=42.50 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=23.8
Q ss_pred cchHHH----Hhhcceeeecc-cceeeeeccccccccceEEecCCCCCCCC
Q psy2779 40 VGQQAA----REVSRAVTWEK-SFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 40 VGQ~~A----REAaGIVVdm~-~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.|-.+| +||.=+-+.|- .||=+|- -=+-+|+.||||||||
T Consensus 215 agl~~AK~lL~EAVvlPi~mPe~F~Girr------PWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 215 AGLHEAKKLLKEAVVLPIWMPEFFKGIRR------PWKGVLMVGPPGTGKT 259 (491)
T ss_pred cchHHHHHHHHHHHhhhhhhHHHHhhccc------ccceeeeeCCCCCcHH
Confidence 444555 45655555551 2333332 2356889999999997
No 182
>PLN02200 adenylate kinase family protein
Probab=85.42 E-value=0.38 Score=36.81 Aligned_cols=18 Identities=11% Similarity=-0.141 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
..++++.|+|||||+-..
T Consensus 43 ~~ii~I~G~PGSGKsT~a 60 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQC 60 (234)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 357899999999997543
No 183
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=85.30 E-value=0.53 Score=38.74 Aligned_cols=23 Identities=13% Similarity=-0.071 Sum_probs=19.0
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+.+..|.+..+.|+||||||-+.
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHH
Confidence 35567889999999999999754
No 184
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.03 E-value=0.25 Score=38.91 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=18.1
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|..++++|++|||||-+-..
T Consensus 141 v~~~~~ili~G~tGsGKTTll~a 163 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKS 163 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHH
Confidence 33688999999999999865443
No 185
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=84.96 E-value=0.43 Score=39.58 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=17.1
Q ss_pred ccceEEecCCCCCCCCCCceeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
..+.+|++||||||||-+-..++
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999986554443
No 186
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=84.91 E-value=0.6 Score=34.31 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.5
Q ss_pred cccceEEecCCCCCCCCCCcee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+.+...++.||+||||+-.-.+
T Consensus 21 ~~~~~~~i~GpNGsGKStll~a 42 (243)
T cd03272 21 FSPKHNVVVGRNGSGKSNFFAA 42 (243)
T ss_pred CCCCcEEEECCCCCCHHHHHHH
Confidence 4578999999999999865433
No 187
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=84.81 E-value=0.48 Score=35.17 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=16.2
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|+++++.||+||||+-+-
T Consensus 24 ~g~~~~ltGpNg~GKSTll 42 (199)
T cd03283 24 KKNGILITGSNMSGKSTFL 42 (199)
T ss_pred CCcEEEEECCCCCChHHHH
Confidence 4789999999999998553
No 188
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.57 E-value=0.48 Score=38.88 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=20.0
Q ss_pred ccccccceEEecCCCCCCCCCCcee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+.+-.|++.++.||||||||-+.-.
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~ 74 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALH 74 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHH
Confidence 4556689999999999999866543
No 189
>PHA00729 NTP-binding motif containing protein
Probab=84.47 E-value=0.38 Score=37.80 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=12.7
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|+||||||=.
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999843
No 190
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.34 E-value=0.44 Score=41.84 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=14.2
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.-+++|++||||||||
T Consensus 257 p~GliLvTGPTGSGKT 272 (500)
T COG2804 257 PQGLILVTGPTGSGKT 272 (500)
T ss_pred CCeEEEEeCCCCCCHH
Confidence 3678999999999987
No 191
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=84.30 E-value=0.5 Score=40.40 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=24.5
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+-+|||..+-+++-.. + + +. ...-+|+.|||||||+
T Consensus 65 ~~iiGqs~~i~~l~~a--l-------~-~~---~~~~vLi~Ge~GtGKt 100 (531)
T TIGR02902 65 DEIIGQEEGIKALKAA--L-------C-GP---NPQHVIIYGPPGVGKT 100 (531)
T ss_pred HHeeCcHHHHHHHHHH--H-------h-CC---CCceEEEECCCCCCHH
Confidence 4599999887766421 1 1 11 1356789999999994
No 192
>PRK10436 hypothetical protein; Provisional
Probab=84.28 E-value=0.53 Score=40.11 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=15.2
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
..+++|++||||||||-
T Consensus 217 ~~GliLvtGpTGSGKTT 233 (462)
T PRK10436 217 PQGLILVTGPTGSGKTV 233 (462)
T ss_pred cCCeEEEECCCCCChHH
Confidence 57899999999999984
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=84.24 E-value=0.39 Score=43.31 Aligned_cols=44 Identities=9% Similarity=-0.055 Sum_probs=28.5
Q ss_pred cccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 38 GLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 38 GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
-..|++++.|+.--.+.. .+..+...|..+++.||||||||-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~-------~~~~~~~~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 323 DHYGLERVKDRILEYLAV-------QSRVNKIKGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred hccCHHHHHHHHHHHHHH-------HHhcccCCCceEEEECCCCCCHHHHH
Confidence 378999999876322221 01112235789999999999987443
No 194
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=84.17 E-value=0.24 Score=40.59 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=19.3
Q ss_pred ccceEEecCCCCCCCCCCceeeeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIIDS 94 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~~ 94 (101)
+++-+|++|+||||||-+-..+++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 5778999999999998665544443
No 195
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=84.00 E-value=0.37 Score=40.16 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccccccceEEecCCCCCCCCCCcee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+....|..+|+.|+||||||.+..-
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~ 292 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASK 292 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHH
Confidence 4566789999999999999987644
No 196
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=83.98 E-value=0.44 Score=37.11 Aligned_cols=40 Identities=8% Similarity=0.065 Sum_probs=26.6
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCCc
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+-+|||+.+.+.. .+. ++.+++ ..++|+.||+|+||+.+-
T Consensus 4 ~~i~g~~~~~~~l---~~~-------~~~~~~--~ha~Lf~G~~G~Gk~~la 43 (313)
T PRK05564 4 HTIIGHENIKNRI---KNS-------IIKNRF--SHAHIIVGEDGIGKSLLA 43 (313)
T ss_pred hhccCcHHHHHHH---HHH-------HHcCCC--CceEEeECCCCCCHHHHH
Confidence 4578999987652 233 233332 457899999999987543
No 197
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=83.97 E-value=0.6 Score=30.82 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=13.4
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
+.+++.|++|||||=
T Consensus 25 ~~~~i~~~~GsGKT~ 39 (201)
T smart00487 25 RDVILAAPTGSGKTL 39 (201)
T ss_pred CcEEEECCCCCchhH
Confidence 678899999999985
No 198
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=83.94 E-value=0.47 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=15.3
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
++-+|++|+||||||-+..
T Consensus 144 ~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5568899999999986543
No 199
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.93 E-value=0.55 Score=41.12 Aligned_cols=52 Identities=12% Similarity=-0.012 Sum_probs=28.4
Q ss_pred ccCcccchHHHHhhcceeeecccceee-eeccccccccceEEecCCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFE-RCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~-~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-+.++|..++.+.+-=.+.+- +..- ..+.-..-.++-+|+.||||||||-.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~-~~~~~~~~~~gi~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELP-MKHPELFEHLGIEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCceEEEECCCCCChHHH
Confidence 3445778877766554333320 0000 00111223456788999999999854
No 200
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.85 E-value=0.49 Score=41.58 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=26.1
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+-. ..+ +.++++ ..++|+.||||+||+.
T Consensus 15 f~~liGq~~i~~~L---~~~-------l~~~rl--~~a~Lf~Gp~G~GKtt 53 (620)
T PRK14948 15 FDELVGQEAIATTL---KNA-------LISNRI--APAYLFTGPRGTGKTS 53 (620)
T ss_pred HhhccChHHHHHHH---HHH-------HHcCCC--CceEEEECCCCCChHH
Confidence 46689999886642 222 222232 3578999999999984
No 201
>PRK08727 hypothetical protein; Validated
Probab=83.67 E-value=0.44 Score=35.95 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=13.4
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++.|++|||||=.
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999843
No 202
>PLN02165 adenylate isopentenyltransferase
Probab=83.66 E-value=0.54 Score=39.00 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=14.4
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
|.+++|.||||||||-
T Consensus 43 g~iivIiGPTGSGKSt 58 (334)
T PLN02165 43 DKVVVIMGATGSGKSR 58 (334)
T ss_pred CCEEEEECCCCCcHHH
Confidence 7799999999999973
No 203
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=83.59 E-value=0.5 Score=32.37 Aligned_cols=15 Identities=13% Similarity=0.167 Sum_probs=12.0
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
..-+|+.|+|||||.
T Consensus 21 ~~pvli~GE~GtGK~ 35 (138)
T PF14532_consen 21 SSPVLITGEPGTGKS 35 (138)
T ss_dssp SS-EEEECCTTSSHH
T ss_pred CCcEEEEcCCCCCHH
Confidence 456889999999974
No 204
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=83.58 E-value=0.82 Score=33.23 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=18.7
Q ss_pred ccccceEEecCCCCCCCCCCceee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+-.|..+++.||+||||+-+-.++
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i 49 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSI 49 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHH
Confidence 335689999999999998665544
No 205
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.49 E-value=0.68 Score=34.15 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=19.4
Q ss_pred cccccceEEecCCCCCCCCCCceee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
..-.|.++.+.||+|||||-.-.++
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4456899999999999998654433
No 206
>PRK11823 DNA repair protein RadA; Provisional
Probab=83.39 E-value=0.54 Score=39.40 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.6
Q ss_pred ccccccceEEecCCCCCCCCCCceeee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
+....|.++|+.|+||+|||-+...+.
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a 101 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVA 101 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHH
Confidence 355567899999999999987654443
No 207
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=83.33 E-value=0.6 Score=38.76 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=18.7
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
+.-.|..+++-||.||||+-+--|
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~ 48 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRM 48 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHH
Confidence 455688999999999999754433
No 208
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.25 E-value=0.58 Score=39.88 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.7
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
..+++|++||||||||-..
T Consensus 241 ~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999998544
No 209
>PRK07667 uridine kinase; Provisional
Probab=83.19 E-value=0.35 Score=35.33 Aligned_cols=19 Identities=11% Similarity=-0.090 Sum_probs=15.6
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
..++.++|+||||||.++.
T Consensus 17 ~~iIgI~G~~gsGKStla~ 35 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVA 35 (193)
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 3677899999999998654
No 210
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.19 E-value=0.59 Score=36.57 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.2
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.++++++.||+|+|||-...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 47799999999999985443
No 211
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.15 E-value=0.36 Score=43.04 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=25.9
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+ ++..+ +++++. --++|+.||||||||-
T Consensus 15 f~dIiGQe~v~~---~L~~a-------i~~~ri--~ha~Lf~GPpG~GKTt 53 (624)
T PRK14959 15 FAEVAGQETVKA---ILSRA-------AQENRV--APAYLFSGTRGVGKTT 53 (624)
T ss_pred HHHhcCCHHHHH---HHHHH-------HHcCCC--CceEEEECCCCCCHHH
Confidence 467899998733 33344 333332 2478899999999974
No 212
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.10 E-value=0.38 Score=35.30 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=12.8
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+.-|++.|+||||||=.
T Consensus 47 ~~~l~l~G~~G~GKThL 63 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHL 63 (178)
T ss_dssp --EEEEEESTTSSHHHH
T ss_pred CeEEEEEhhHhHHHHHH
Confidence 44588999999999844
No 213
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=83.09 E-value=0.66 Score=31.80 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=14.0
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
|..++-++.||+|||||-
T Consensus 17 f~~g~~vi~G~Ng~GKSt 34 (202)
T PF13476_consen 17 FSPGLNVIYGPNGSGKST 34 (202)
T ss_dssp --SEEEEEEESTTSSHHH
T ss_pred cCCCcEEEECCCCCCHHH
Confidence 356789999999999964
No 214
>KOG0989|consensus
Probab=83.05 E-value=0.56 Score=39.75 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=24.1
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-++||+.+-.+.- .- ++ + .-.-.+|+-||||||||-
T Consensus 35 ~de~~gQe~vV~~L~---~a-------~~--~-~~lp~~LFyGPpGTGKTS 72 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLK---NA-------LL--R-RILPHYLFYGPPGTGKTS 72 (346)
T ss_pred HHhhcchHHHHHHHH---HH-------Hh--h-cCCceEEeeCCCCCcHhH
Confidence 577899987543321 00 11 1 124568899999999984
No 215
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=83.04 E-value=0.64 Score=37.72 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=21.2
Q ss_pred cccccceEEecCCCCCCCCCCceeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+-.|..++++|+||+|||-|...++
T Consensus 191 G~~~G~l~vi~g~pg~GKT~~~l~~a 216 (434)
T TIGR00665 191 GLQPSDLIILAARPSMGKTAFALNIA 216 (434)
T ss_pred CCCCCeEEEEEeCCCCChHHHHHHHH
Confidence 45668899999999999998876544
No 216
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=82.86 E-value=0.25 Score=40.05 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.3
Q ss_pred ccceEEecCCCCCCCCCCceeeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIID 93 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~ 93 (101)
+++-+|++|+||||||-+.-.+++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHh
Confidence 477889999999999866544333
No 217
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.83 E-value=0.6 Score=40.18 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
..+.+|++||||||||-.
T Consensus 315 ~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 468899999999999854
No 218
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=82.72 E-value=0.75 Score=41.64 Aligned_cols=44 Identities=14% Similarity=-0.079 Sum_probs=27.7
Q ss_pred CcccchHHHHhhcceeeecccceeee--eccccccccceEEecCCCCCCCCCCce
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFER--CKSHSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~--~~~~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.-+.|++++-+.. |+- .+ .+. -.-.+++|++.||||+|||.+..
T Consensus 76 ~d~yGlee~ieri---v~~-----l~~Aa~g-l~~~~~IL~LvGPpG~GKSsLa~ 121 (644)
T PRK15455 76 EEFYGMEEAIEQI---VSY-----FRHAAQG-LEEKKQILYLLGPVGGGKSSLAE 121 (644)
T ss_pred hcccCcHHHHHHH---HHH-----HHHHHHh-cCCCCceEEEecCCCCCchHHHH
Confidence 3578999887752 121 10 000 01147899999999999987644
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.69 E-value=0.63 Score=38.88 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.6
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
...|+++++.||||+|||-...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3458899999999999985443
No 220
>KOG0741|consensus
Probab=82.44 E-value=0.67 Score=42.32 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=29.6
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccc-------cccc--------------------cceEEecCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSH-------SLFR--------------------GGRAVAGGRTKCPKP 85 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~-------~~~~--------------------g~~ll~~G~p~~g~~ 85 (101)
=-++|+-+-|.+.-+|.+- .|.|+..-=+ ++|+ =+=+|+-||||||||
T Consensus 196 lnL~~~~~~k~~~n~ii~P-df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKT 270 (744)
T KOG0741|consen 196 LNLIGKSKTKPASNSIINP-DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKT 270 (744)
T ss_pred eEeeccccccchhccccCC-CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChh
Confidence 3467777777777777765 5666543111 1111 123679999999997
No 221
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.35 E-value=0.5 Score=41.24 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=27.1
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+-+|||+.+.+..--.+ +++++ ..++|+.||||+|||-
T Consensus 12 ~fdeiiGqe~v~~~L~~~I----------~~grl--~hayLf~Gp~G~GKTt 51 (535)
T PRK08451 12 HFDELIGQESVSKTLSLAL----------DNNRL--AHAYLFSGLRGSGKTS 51 (535)
T ss_pred CHHHccCcHHHHHHHHHHH----------HcCCC--CeeEEEECCCCCcHHH
Confidence 3567999999875543222 22332 4567899999999874
No 222
>PRK09354 recA recombinase A; Provisional
Probab=82.22 E-value=0.68 Score=38.48 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=21.1
Q ss_pred ccccccceEEecCCCCCCCCCCceeee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
+..-.|++.++.||||||||-+.-.++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~ 81 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAI 81 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHH
Confidence 456668899999999999997655433
No 223
>PTZ00035 Rad51 protein; Provisional
Probab=82.21 E-value=0.86 Score=36.96 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=18.3
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
..-.|.+..+.|+||||||-+.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHH
Confidence 4556788999999999999765
No 224
>KOG0739|consensus
Probab=81.86 E-value=0.98 Score=39.05 Aligned_cols=43 Identities=16% Similarity=-0.008 Sum_probs=28.2
Q ss_pred cchHHHHhhcc--eeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 40 VGQQAAREVSR--AVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 40 VGQ~~AREAaG--IVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-|-+.|.||.. +|+-+|.-|| =++++.-=+.+|+-|||||||.
T Consensus 136 AGLE~AKeALKEAVILPIKFPql---FtGkR~PwrgiLLyGPPGTGKS 180 (439)
T KOG0739|consen 136 AGLEGAKEALKEAVILPIKFPQL---FTGKRKPWRGILLYGPPGTGKS 180 (439)
T ss_pred ccchhHHHHHHhheeecccchhh---hcCCCCcceeEEEeCCCCCcHH
Confidence 35566666653 5666644444 3446555677899999999984
No 225
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=81.77 E-value=0.65 Score=37.52 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=18.0
Q ss_pred ccceEEecCCCCCCCCCCceeeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIID 93 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~ 93 (101)
+++-+|++|+||||||-+...+++
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 467788999999999965544443
No 226
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=81.67 E-value=0.64 Score=40.81 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=16.1
Q ss_pred cceEEecCCCCCCCCCCceeee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
...+|+-||||||||-.-.-++
T Consensus 173 ~~~~lI~GpPGTGKT~t~~~ii 194 (637)
T TIGR00376 173 KDLFLIHGPPGTGKTRTLVELI 194 (637)
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3678899999999985433333
No 227
>KOG0735|consensus
Probab=81.59 E-value=0.34 Score=45.29 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=19.5
Q ss_pred cceEEecCCCCCCCCCCceeeeeee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
..=+|+-||||||||-..|-++.+|
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~ 725 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNS 725 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhC
Confidence 3346799999999998877776665
No 228
>PRK09087 hypothetical protein; Validated
Probab=81.46 E-value=0.76 Score=34.92 Aligned_cols=50 Identities=14% Similarity=-0.012 Sum_probs=29.0
Q ss_pred cCCCCCCcccccCcccc-hHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 25 GLKENGEANEMAAGLVG-QQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 25 GLde~g~a~~~a~GlVG-Q~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
-|+=...+.+..+-||. ..+ ++|..++.+. . + . ....+++.||+|||||=
T Consensus 9 ~l~~~~~~~~~~~~Fi~~~~N-~~a~~~l~~~-------~-~-~--~~~~l~l~G~~GsGKTh 59 (226)
T PRK09087 9 PLNFSHDPAYGRDDLLVTESN-RAAVSLVDHW-------P-N-W--PSPVVVLAGPVGSGKTH 59 (226)
T ss_pred eeCCCCCCCCChhceeecCch-HHHHHHHHhc-------c-c-C--CCCeEEEECCCCCCHHH
Confidence 34433444556677764 434 3354444443 1 1 1 25678999999999974
No 229
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=81.44 E-value=0.6 Score=41.19 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=18.9
Q ss_pred ccceEEecCCCCCCCCCCceeeeeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
..+..++.|+||||||-....++..+
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 36789999999999985544444443
No 230
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=81.39 E-value=0.81 Score=33.30 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=15.5
Q ss_pred ceEEecCCCCCCCCCCcee
Q psy2779 72 GRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~~ 90 (101)
+++++.||+|+||+-+--+
T Consensus 29 ~~~~ltG~Ng~GKStll~~ 47 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKT 47 (200)
T ss_pred eEEEEECCCCCChHHHHHH
Confidence 6899999999999865443
No 231
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=81.29 E-value=0.54 Score=39.20 Aligned_cols=47 Identities=13% Similarity=-0.076 Sum_probs=26.2
Q ss_pred CCcccccCccc-chHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 30 GEANEMAAGLV-GQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 30 g~a~~~a~GlV-GQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.++.+..+-|| |..+ +.|...+..+ .++... -.-+++.||||||||-
T Consensus 98 l~~~~tFdnFv~g~~n-~~a~~~~~~~-------~~~~~~--~n~l~lyG~~G~GKTH 145 (440)
T PRK14088 98 LNPDYTFENFVVGPGN-SFAYHAALEV-------AKNPGR--YNPLFIYGGVGLGKTH 145 (440)
T ss_pred CCCCCcccccccCCch-HHHHHHHHHH-------HhCcCC--CCeEEEEcCCCCcHHH
Confidence 45556666666 5433 2333333333 221111 2358999999999974
No 232
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=81.28 E-value=0.68 Score=40.12 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=14.3
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.++-+++.|+||||||
T Consensus 193 ~~~~iil~GppGtGKT 208 (459)
T PRK11331 193 IKKNIILQGPPGVGKT 208 (459)
T ss_pred cCCCEEEECCCCCCHH
Confidence 5778889999999998
No 233
>PHA02244 ATPase-like protein
Probab=81.26 E-value=0.67 Score=39.39 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=13.5
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
+.-+||.||||||||-
T Consensus 119 ~~PVLL~GppGtGKTt 134 (383)
T PHA02244 119 NIPVFLKGGAGSGKNH 134 (383)
T ss_pred CCCEEEECCCCCCHHH
Confidence 5568899999999973
No 234
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=81.19 E-value=0.72 Score=38.91 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=20.7
Q ss_pred ccccccceEEecCCCCCCCCCCceee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+....|.++|++|+||+|||=+.-.+
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~ 114 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQV 114 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHH
Confidence 35667889999999999998765443
No 235
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=81.17 E-value=0.49 Score=34.22 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=18.7
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
..|.++++.|+.|||||-|+..+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l 42 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGL 42 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999998776544
No 236
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=80.99 E-value=0.61 Score=37.59 Aligned_cols=18 Identities=11% Similarity=-0.202 Sum_probs=14.6
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
...+++.|+||||||-..
T Consensus 136 ~n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 356899999999998554
No 237
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=80.96 E-value=0.6 Score=41.11 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=23.3
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+-+|||++--+- + +++ . + . + ...-+|+.||||||||-.
T Consensus 182 ~~~igr~~ei~~--~-~~~-----L-~-~-~--~~~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 182 DPLIGREDELER--T-IQV-----L-C-R-R--KKNNPLLVGEPGVGKTAI 219 (731)
T ss_pred CcccCcHHHHHH--H-HHH-----H-h-c-C--CCCceEEECCCCCCHHHH
Confidence 468888876663 2 232 1 1 1 1 234467899999999754
No 238
>PRK05748 replicative DNA helicase; Provisional
Probab=80.83 E-value=0.98 Score=37.22 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=21.3
Q ss_pred cccccceEEecCCCCCCCCCCceeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+-.|..++++|+||+|||-|..-++
T Consensus 199 G~~~G~livIaarpg~GKT~~al~ia 224 (448)
T PRK05748 199 GLQPNDLIIVAARPSVGKTAFALNIA 224 (448)
T ss_pred CCCCCceEEEEeCCCCCchHHHHHHH
Confidence 56678899999999999998765444
No 239
>KOG3078|consensus
Probab=80.72 E-value=0.65 Score=37.09 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.3
Q ss_pred cceEEecCCCCCCCCCCceeeeeeec
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMIIDSWV 96 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~~~~~ 96 (101)
+..+++-|+||+||.|++.++.+.|-
T Consensus 15 ~~~~v~~G~pg~gkgt~a~~l~~~~~ 40 (235)
T KOG3078|consen 15 GVRAVLLGAPGSGKGTQAPRLTKNFG 40 (235)
T ss_pred ceEEEEEeCCCCCCCccCHHHHHhcC
Confidence 56677899999999999999888773
No 240
>PRK06547 hypothetical protein; Provisional
Probab=80.64 E-value=0.72 Score=33.82 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=16.1
Q ss_pred cceEEecCCCCCCCCCCceee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.++++.|++|||||-++..+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l 35 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGAL 35 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 346778899999998766543
No 241
>KOG1807|consensus
Probab=80.57 E-value=0.2 Score=46.93 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=32.6
Q ss_pred cceeeeeccccccccceEEecCCCCCCCCCCceeeeeeecccC
Q psy2779 57 SFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTSMIIDSWVEGS 99 (101)
Q Consensus 57 ~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~~~~~~~~~~~ 99 (101)
|-||..+ +++..+.-|+-|||||||+=-|+-|+|.-.+.+
T Consensus 382 Sq~~A~q---s~ltyelsliqgppGTgkt~vtlkav~tLL~n~ 421 (1025)
T KOG1807|consen 382 SQQFAKQ---SKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNS 421 (1025)
T ss_pred HHHHHHH---HHhhhhhheeecCCCCCceeehHHHHHHHHhcc
Confidence 4566667 777899999999999999999999888655443
No 242
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=80.51 E-value=1.1 Score=33.02 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=14.2
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.| ++++.||+||||+-.
T Consensus 22 ~g-~~~i~G~nGsGKStl 38 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNI 38 (197)
T ss_pred CC-cEEEECCCCCCHHHH
Confidence 35 889999999999754
No 243
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.38 E-value=0.7 Score=40.54 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=27.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.+. +.++ ++++++ ..++|+.||+|+||+-
T Consensus 16 f~~viGq~~~~~~---L~~~-------i~~~~l--~hayLf~Gp~G~GKtt 54 (614)
T PRK14971 16 FESVVGQEALTTT---LKNA-------IATNKL--AHAYLFCGPRGVGKTT 54 (614)
T ss_pred HHHhcCcHHHHHH---HHHH-------HHcCCC--CeeEEEECCCCCCHHH
Confidence 4568999999775 3333 333332 4678999999999864
No 244
>KOG0736|consensus
Probab=80.26 E-value=0.79 Score=43.05 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=11.4
Q ss_pred eEEecCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKP 85 (101)
Q Consensus 73 ~ll~~G~p~~g~~ 85 (101)
=+|+-||||||||
T Consensus 707 GILLYGPPGTGKT 719 (953)
T KOG0736|consen 707 GILLYGPPGTGKT 719 (953)
T ss_pred eeEEECCCCCchH
Confidence 3679999999998
No 245
>KOG0737|consensus
Probab=80.23 E-value=0.62 Score=39.91 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=11.9
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
+-+|+-||||||||
T Consensus 128 kGiLL~GPpG~GKT 141 (386)
T KOG0737|consen 128 KGILLYGPPGTGKT 141 (386)
T ss_pred ccceecCCCCchHH
Confidence 45679999999987
No 246
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=80.20 E-value=0.79 Score=37.85 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.5
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+.+..|.++|++|+||+||+=+.
T Consensus 77 GGi~~GslvLI~G~pG~GKStLl 99 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLL 99 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHH
Confidence 34566889999999999998643
No 247
>PTZ00202 tuzin; Provisional
Probab=80.18 E-value=0.93 Score=40.43 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=30.9
Q ss_pred ccCcccchHHHHhhcceeee-cccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTW-EKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVd-m~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
...+|||.+..-.+..-+++ + ..-..++++++|++|||||-.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~-----------d~~~privvLtG~~G~GKTTL 302 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL-----------DTAHPRIVVFTGFRGCGKSSL 302 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc-----------CCCCceEEEEECCCCCCHHHH
Confidence 36799999988888776664 3 111235899999999999743
No 248
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=79.83 E-value=0.92 Score=36.83 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.4
Q ss_pred cccccceEEecCCCCCCCCCCceeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+-.|..++++|+||+|||-|...+.
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia 215 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIA 215 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 55668899999999999998876554
No 249
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.76 E-value=0.89 Score=32.86 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.9
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
-.|.++.+.||+||||+
T Consensus 28 ~~G~~~~l~G~nGsGKS 44 (218)
T cd03255 28 EKGEFVAIVGPSGSGKS 44 (218)
T ss_pred cCCCEEEEEcCCCCCHH
Confidence 35889999999999986
No 250
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.59 E-value=1.2 Score=32.17 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=17.4
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
....|.++.+.||+||||+-+-
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl 43 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTI 43 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHH
Confidence 3446899999999999986443
No 251
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=79.53 E-value=0.48 Score=35.70 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=24.8
Q ss_pred CcccccCccc-ch--HHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 31 EANEMAAGLV-GQ--QAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 31 ~a~~~a~GlV-GQ--~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
++.++.+-|| |. +.|..|+. .+ ++.... .-.-+++.|++|+|||=
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~---~i-------a~~~~~-~~~~l~l~G~~G~GKTH 49 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAK---AI-------AENPGE-RYNPLFLYGPSGLGKTH 49 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHH---HH-------HHSTTT-SSSEEEEEESTTSSHHH
T ss_pred CCCCccccCCcCCcHHHHHHHHH---HH-------HhcCCC-CCCceEEECCCCCCHHH
Confidence 4566677775 53 34444444 34 222221 23458999999999873
No 252
>KOG0743|consensus
Probab=79.50 E-value=0.72 Score=40.24 Aligned_cols=20 Identities=10% Similarity=-0.183 Sum_probs=14.4
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
++=+|=-||-|||||||+-+
T Consensus 232 kawKRGYLLYGPPGTGKSS~ 251 (457)
T KOG0743|consen 232 KAWKRGYLLYGPPGTGKSSF 251 (457)
T ss_pred cchhccceeeCCCCCCHHHH
Confidence 33445567999999998643
No 253
>PRK07004 replicative DNA helicase; Provisional
Probab=79.48 E-value=1.2 Score=37.44 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.0
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
..-.|..++++|+||+|||-|.-.
T Consensus 209 G~~~g~liviaarpg~GKT~~al~ 232 (460)
T PRK07004 209 GMHGGELIIVAGRPSMGKTAFSMN 232 (460)
T ss_pred CCCCCceEEEEeCCCCCccHHHHH
Confidence 556789999999999999987543
No 254
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=79.46 E-value=0.99 Score=32.52 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=16.1
Q ss_pred cceEEecCCCCCCCCCCceee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~ 91 (101)
...+++.|++||||+-...++
T Consensus 4 ~~~I~liG~~GaGKStl~~~L 24 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQL 24 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHH
Confidence 456889999999998765443
No 255
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=79.44 E-value=0.93 Score=32.38 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=14.9
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++.+.||+||||+-
T Consensus 23 ~Ge~~~i~G~nGsGKST 39 (206)
T TIGR03608 23 KGKMYAIIGESGSGKST 39 (206)
T ss_pred CCcEEEEECCCCCCHHH
Confidence 58899999999999863
No 256
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.29 E-value=1 Score=38.36 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.2
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
.+.+|++|||||||+-
T Consensus 125 ~GLILVTGpTGSGKST 140 (353)
T COG2805 125 RGLILVTGPTGSGKST 140 (353)
T ss_pred CceEEEeCCCCCcHHH
Confidence 5889999999999974
No 257
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.24 E-value=0.92 Score=32.24 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.2
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|.++++.|+|||||+-+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~ 36 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIAN 36 (184)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 37899999999999975443
No 258
>KOG0651|consensus
Probab=79.23 E-value=1.2 Score=38.22 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=27.4
Q ss_pred HHHHhhcceee-e-cccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 43 QAAREVSRAVT-W-EKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 43 ~~AREAaGIVV-d-m~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.|||=..+|+ - ++.|-|-|+ .+---..+||-||||+|||=.
T Consensus 139 ~qirelre~ielpl~np~lf~rv---gIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 139 YQIRELREVIELPLTNPELFLRV---GIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred HHHHHHHhheEeeccCchhcccc---CCCCCceeEEeCCCCCchhHH
Confidence 44555554432 2 245556666 444567899999999999843
No 259
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=79.06 E-value=1 Score=29.14 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.2
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
|.+.|+.|++|+||+
T Consensus 23 g~~tli~G~nGsGKS 37 (62)
T PF13555_consen 23 GDVTLITGPNGSGKS 37 (62)
T ss_pred CcEEEEECCCCCCHH
Confidence 458999999999995
No 260
>PRK06921 hypothetical protein; Provisional
Probab=78.98 E-value=0.91 Score=35.45 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=14.2
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+.-+++.|+||+|||=.
T Consensus 117 ~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 56788999999999843
No 261
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=78.78 E-value=1.3 Score=41.03 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=17.2
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
+...|-+|.+.||||.|||-
T Consensus 346 ~~~kGpILcLVGPPGVGKTS 365 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTS 365 (782)
T ss_pred ccCCCcEEEEECCCCCCchh
Confidence 44578999999999999985
No 262
>KOG0060|consensus
Probab=78.73 E-value=0.63 Score=42.23 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=23.8
Q ss_pred cccccceEEecCCCCCCCCCCceeeeeeec
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMIIDSWV 96 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~~~~~ 96 (101)
....|.-||++||+|||||-.--+.-+-|-
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 345689999999999999976666666664
No 263
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=78.64 E-value=1.1 Score=31.50 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=18.7
Q ss_pred ccceEEecCCCCCCCCCCceeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.|..+++.||+||||+-...++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 47889999999999997666643
No 264
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=78.61 E-value=1.1 Score=33.73 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=17.3
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
....|.++.+.|++||||+-.-
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl 64 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLS 64 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3446889999999999986443
No 265
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=78.50 E-value=1 Score=32.56 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.4
Q ss_pred cccceEEecCCCCCCCCCCc
Q psy2779 69 FRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~ 88 (101)
-.|.++.+.||+||||+-+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLA 48 (228)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35889999999999987443
No 266
>PRK08116 hypothetical protein; Validated
Probab=78.49 E-value=0.84 Score=35.61 Aligned_cols=18 Identities=11% Similarity=-0.136 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
+.-+++.|+||||||-..
T Consensus 114 ~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999998543
No 267
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=78.46 E-value=1.1 Score=36.41 Aligned_cols=17 Identities=18% Similarity=-0.052 Sum_probs=14.3
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
..++++.|||+||||..
T Consensus 4 ~~ii~I~GpTasGKS~L 20 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNI 20 (300)
T ss_pred CcEEEEECCCccCHHHH
Confidence 45899999999999853
No 268
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=78.42 E-value=1 Score=33.03 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=16.3
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.||+||||+-+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTL 44 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTL 44 (243)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34688999999999998643
No 269
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=78.25 E-value=1.1 Score=32.23 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.0
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++.+.||+||||+-
T Consensus 25 ~G~~~~l~G~nGsGKST 41 (213)
T cd03262 25 KGEVVVIIGPSGSGKST 41 (213)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 58899999999999863
No 270
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=78.17 E-value=1.1 Score=32.32 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 23 i~~Ge~~~i~G~nGsGKST 41 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTT 41 (205)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 271
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=78.11 E-value=1.1 Score=31.93 Aligned_cols=20 Identities=20% Similarity=0.031 Sum_probs=16.3
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.||+||||+-.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTL 34 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTL 34 (190)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34688999999999998643
No 272
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.00 E-value=0.89 Score=35.53 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.6
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
.-+++.|+||||||=..
T Consensus 100 ~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36889999999998543
No 273
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.93 E-value=1.2 Score=32.52 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
+-.|.++.+.||+||||+-
T Consensus 28 i~~Ge~~~l~G~nGsGKST 46 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKST 46 (233)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 274
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=77.77 E-value=0.86 Score=34.27 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=18.1
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+..|...+++|+||.|||-|..-
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ 38 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQ 38 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHH
T ss_pred CCCcCcEEEEEecccCCchHHHHH
Confidence 455688999999999999977543
No 275
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=77.77 E-value=1.1 Score=32.14 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.3
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|..+.+.||+||||+-
T Consensus 25 ~~G~~~~i~G~nGsGKST 42 (214)
T cd03292 25 SAGEFVFLVGPSGAGKST 42 (214)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 358899999999999863
No 276
>PRK06851 hypothetical protein; Provisional
Probab=77.65 E-value=0.31 Score=40.71 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.3
Q ss_pred ccceEEecCCCCCCCCCCceeeeeeec
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIIDSWV 96 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~~~~ 96 (101)
..++++|.|+|||||+.....+++.|.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999988877776664
No 277
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=77.56 E-value=1.1 Score=32.17 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=16.8
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
-.|..+.+.||+||||+-+-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~ 44 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMK 44 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 358899999999999874433
No 278
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=77.39 E-value=1 Score=39.45 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=17.8
Q ss_pred ccceEEecCCCCCCCCCCceeeee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMIID 93 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~~~ 93 (101)
..+..++.|+||||||-...-++.
T Consensus 159 ~~~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 159 KSNFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred hCCeEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999865444433
No 279
>PRK06696 uridine kinase; Validated
Probab=77.24 E-value=1.1 Score=33.19 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=17.0
Q ss_pred cceEEecCCCCCCCCCCceeee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
--++.++|++|||||-++..+.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELA 43 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999987654443
No 280
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=77.23 E-value=1.3 Score=31.93 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=18.1
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|.++.+.||+||||+-+-.+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~ 50 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSA 50 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 34689999999999998755444
No 281
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.19 E-value=1.2 Score=32.60 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=17.2
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
...|.++.+.||+||||+-.-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLR 45 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3358899999999999874433
No 282
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=77.17 E-value=1.2 Score=36.04 Aligned_cols=18 Identities=22% Similarity=0.027 Sum_probs=15.0
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
..++++.|||||||+...
T Consensus 4 ~~~i~i~GptgsGKt~la 21 (307)
T PRK00091 4 PKVIVIVGPTASGKTALA 21 (307)
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 468999999999998643
No 283
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=77.04 E-value=0.75 Score=36.88 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=27.0
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.++||+.+.+..-=.+ +++++ --++|+.||+|+||.+.
T Consensus 4 ~~iiGq~~~~~~L~~~i----------~~~rl--~ha~Lf~G~~G~Gk~~~ 42 (314)
T PRK07399 4 ANLIGQPLAIELLTAAI----------KQNRI--APAYLFAGPEGVGRKLA 42 (314)
T ss_pred HHhCCHHHHHHHHHHHH----------HhCCC--CceEEEECCCCCCHHHH
Confidence 56899999987543222 22222 35889999999998764
No 284
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=76.94 E-value=1.6 Score=33.31 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=19.3
Q ss_pred eccccccccceEEecCCCCCCCCCC
Q psy2779 63 CKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 63 ~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+++..+-.|.++.+.||+||||+-+
T Consensus 17 ~~~~~i~~Ge~~~i~G~NGsGKSTL 41 (246)
T cd03237 17 VEGGSISESEVIGILGPNGIGKTTF 41 (246)
T ss_pred EecCCcCCCCEEEEECCCCCCHHHH
Confidence 3444556789999999999999743
No 285
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=76.82 E-value=1.3 Score=31.47 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.3
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
....|..+.+.|++||||+-+-.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQL 47 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHH
Confidence 344688999999999998754443
No 286
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=76.80 E-value=1.4 Score=36.13 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.6
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+++|-.+++-||.|||||-
T Consensus 27 ~ia~ge~vv~lGpSGcGKTT 46 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTT 46 (259)
T ss_pred eecCCCEEEEEcCCCccHHH
Confidence 56789999999999999974
No 287
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=76.80 E-value=1.2 Score=32.43 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=15.0
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++.+.||+||||+-
T Consensus 35 ~Ge~~~i~G~nGsGKST 51 (228)
T PRK10584 35 RGETIALIGESGSGKST 51 (228)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 58999999999999863
No 288
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=76.74 E-value=1.2 Score=32.01 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.9
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
-.|.++.+.||+||||+
T Consensus 26 ~~G~~~~l~G~nGsGKS 42 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKT 42 (214)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 36889999999999986
No 289
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.70 E-value=1.5 Score=30.95 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=16.4
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.||+||||+-
T Consensus 24 ~i~~G~~~~l~G~nGsGKst 43 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKST 43 (171)
T ss_pred EEcCCCEEEEECCCCCCHHH
Confidence 34468999999999999853
No 290
>KOG0652|consensus
Probab=76.70 E-value=1.6 Score=37.34 Aligned_cols=63 Identities=21% Similarity=0.119 Sum_probs=36.1
Q ss_pred ccccccccCCCCCCccccc-CcccchHH-HHhhcceeeecccc-eeeeeccccccccceEEecCCCCCCCC
Q psy2779 18 HSHVKGLGLKENGEANEMA-AGLVGQQA-AREVSRAVTWEKSF-QFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 18 HSHIkGLGLde~g~a~~~a-~GlVGQ~~-AREAaGIVVdm~~~-~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-|.+|+.-+|+.-+-.|+. .|+=-|.+ --|| ||+-|+.- .|+.. .+-.-+-+|+.||||||||
T Consensus 154 DsrVkaMevDekPtE~YsDiGGldkQIqELvEA--iVLpmth~ekF~~l---gi~pPKGvLmYGPPGTGKT 219 (424)
T KOG0652|consen 154 DSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEA--IVLPMTHKEKFENL---GIRPPKGVLMYGPPGTGKT 219 (424)
T ss_pred hhhcceeeeccCCcccccccccHHHHHHHHHHH--hccccccHHHHHhc---CCCCCCceEeeCCCCCcHH
Confidence 4667788887765544433 34544433 2344 66777321 12222 3334455779999999997
No 291
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.70 E-value=0.9 Score=38.23 Aligned_cols=51 Identities=12% Similarity=-0.085 Sum_probs=28.1
Q ss_pred CCCcccccCccc-chHHHHhhcceeeecccceeeeecccccccc---ceEEecCCCCCCCCCC
Q psy2779 29 NGEANEMAAGLV-GQQAAREVSRAVTWEKSFQFERCKSHSLFRG---GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 29 ~g~a~~~a~GlV-GQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g---~~ll~~G~p~~g~~~~ 87 (101)
+.++.+..+-|| |. .-+.|...+.++ .+......| .-+++.||||+|||=.
T Consensus 103 ~l~~~~tFdnFv~g~-~N~~a~~~a~~~-------a~~~~~~~~~~~npl~L~G~~G~GKTHL 157 (445)
T PRK12422 103 ELDPLMTFANFLVTP-ENDLPHRILQEF-------TKVSEQGKGFPFNPIYLFGPEGSGKTHL 157 (445)
T ss_pred CCCccccccceeeCC-cHHHHHHHHHHH-------HhccccccCCCCceEEEEcCCCCCHHHH
Confidence 345666677776 53 333444444444 211111112 3578999999999844
No 292
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=76.67 E-value=1.2 Score=31.95 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=15.3
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+.||+|||||-
T Consensus 25 ~~G~~~~l~G~nGsGKST 42 (211)
T cd03225 25 KKGEFVLIVGPNGSGKST 42 (211)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 358899999999999863
No 293
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.67 E-value=1.3 Score=37.18 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|+++++.||+|+|||-.
T Consensus 220 ~~~~i~~vGptGvGKTTt 237 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTT 237 (424)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 367899999999999853
No 294
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=76.65 E-value=1.3 Score=32.44 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.4
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.|++||||+
T Consensus 23 i~~Ge~~~l~G~nGsGKS 40 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKT 40 (230)
T ss_pred ECCCCEEEEECCCCCCHH
Confidence 336889999999999986
No 295
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=76.64 E-value=1.3 Score=32.12 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 26 i~~Ge~~~i~G~nGsGKST 44 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKST 44 (216)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 296
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=76.39 E-value=1.3 Score=30.86 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.4
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
..-.|.++.+.|++||||+-+-
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl 43 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLL 43 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3446899999999999987443
No 297
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.32 E-value=1.3 Score=32.25 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
-.|.++.+.||+|||||
T Consensus 28 ~~G~~~~i~G~nGsGKS 44 (220)
T cd03293 28 EEGEFVALVGPSGCGKS 44 (220)
T ss_pred eCCcEEEEECCCCCCHH
Confidence 35889999999999985
No 298
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=76.26 E-value=1.3 Score=32.62 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.9
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|..+.+.||+|||||-+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTL 49 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTL 49 (225)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 299
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=76.20 E-value=1.3 Score=32.06 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=15.7
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 29 ~~G~~~~i~G~nGsGKSTL 47 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTL 47 (221)
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 300
>PRK13764 ATPase; Provisional
Probab=76.13 E-value=1.2 Score=39.52 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=17.0
Q ss_pred cceEEecCCCCCCCCCCceeeee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMIID 93 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~~ 93 (101)
++-+|++|+||||||-+...+++
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~ 279 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAE 279 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45588999999999866544443
No 301
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=76.00 E-value=1.3 Score=32.03 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 23 i~~Ge~~~i~G~nGsGKST 41 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTT 41 (222)
T ss_pred EcCCeEEEEECCCCCCHHH
Confidence 3468899999999999863
No 302
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=75.98 E-value=1.5 Score=39.26 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|-.||+.||+|||||-.
T Consensus 418 ~G~~llI~G~SG~GKTsL 435 (604)
T COG4178 418 PGERLLITGESGAGKTSL 435 (604)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999843
No 303
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=75.94 E-value=0.86 Score=33.41 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=9.4
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
+.+++-|.||||||
T Consensus 14 ~~~lV~a~AGSGKT 27 (315)
T PF00580_consen 14 GPLLVNAGAGSGKT 27 (315)
T ss_dssp SEEEEEE-TTSSHH
T ss_pred CCEEEEeCCCCCch
Confidence 44555566999997
No 304
>PTZ00088 adenylate kinase 1; Provisional
Probab=75.93 E-value=1.4 Score=33.85 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=13.4
Q ss_pred EEecCCCCCCCCCCcee
Q psy2779 74 AVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 74 ll~~G~p~~g~~~~~~~ 90 (101)
+++.|||||||+-...+
T Consensus 9 Ivl~G~PGsGK~T~a~~ 25 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEI 25 (229)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999755444
No 305
>PRK08939 primosomal protein DnaI; Reviewed
Probab=75.92 E-value=1.2 Score=35.60 Aligned_cols=16 Identities=13% Similarity=-0.226 Sum_probs=13.4
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
++-|++.|+||||||=
T Consensus 156 ~~gl~L~G~~G~GKTh 171 (306)
T PRK08939 156 VKGLYLYGDFGVGKSY 171 (306)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4568899999999974
No 306
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=75.91 E-value=1.7 Score=30.95 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=17.7
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|.++.+.|++||||+-+-.+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~ 44 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKT 44 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 33588999999999998754433
No 307
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=75.85 E-value=0.96 Score=31.49 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
...+++.||+|+|||-.
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 57889999999999743
No 308
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=75.83 E-value=1.4 Score=29.83 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=15.9
Q ss_pred cceEEecCCCCCCCCCCceee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~ 91 (101)
...+++.|++||||+-+-.++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l 34 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQL 34 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHH
Confidence 455889999999998655444
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=75.67 E-value=1.8 Score=30.62 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=16.2
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
....|..+.+.||+||||+-
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSt 43 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKST 43 (173)
T ss_pred EECCCCEEEEECCCCCCHHH
Confidence 33468899999999999863
No 310
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.67 E-value=1.4 Score=36.43 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=11.5
Q ss_pred EEecCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPP 86 (101)
Q Consensus 74 ll~~G~p~~g~~~ 86 (101)
+++.|+||||||-
T Consensus 45 ~~iyG~~GTGKT~ 57 (366)
T COG1474 45 IIIYGPTGTGKTA 57 (366)
T ss_pred EEEECCCCCCHhH
Confidence 7788999999974
No 311
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.65 E-value=1.4 Score=32.73 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=17.6
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|.++.+.||+||||+-+-.++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i 49 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVF 49 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 35889999999999987544433
No 312
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=75.62 E-value=1.4 Score=31.74 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.3
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|..+.+.||+||||+-
T Consensus 24 ~~Ge~~~l~G~nGsGKST 41 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTT 41 (213)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 358899999999999863
No 313
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.57 E-value=1.4 Score=31.68 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.7
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|.++.+.|++||||+-.-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl 43 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLL 43 (195)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5889999999999986433
No 314
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=75.54 E-value=1.5 Score=32.11 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=17.3
Q ss_pred cccceEEecCCCCCCCCCCcee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
-.|-++.+.||+||||+-+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~ 45 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKT 45 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3588999999999998754443
No 315
>KOG1803|consensus
Probab=75.50 E-value=1.5 Score=39.85 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=12.6
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
-.+++-||||||||-
T Consensus 202 ~l~~I~GPPGTGKT~ 216 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTR 216 (649)
T ss_pred CceEeeCCCCCCcee
Confidence 457799999999984
No 316
>PRK05595 replicative DNA helicase; Provisional
Probab=75.48 E-value=1.6 Score=36.03 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.1
Q ss_pred cccccceEEecCCCCCCCCCCceeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+-.|-.++++|+||.|||-|...+.
T Consensus 197 G~~~g~liviaarpg~GKT~~al~ia 222 (444)
T PRK05595 197 GFQKGDMILIAARPSMGKTTFALNIA 222 (444)
T ss_pred CCCCCcEEEEEecCCCChHHHHHHHH
Confidence 45568899999999999998865544
No 317
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=75.39 E-value=1.5 Score=32.33 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 25 i~~Ge~~~i~G~nGsGKST 43 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSS 43 (242)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3368899999999999863
No 318
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.37 E-value=1.5 Score=31.62 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=17.4
Q ss_pred ccceEEecCCCCCCCCCCceee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.|.++.+.||+||||+-+-.++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l 53 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVL 53 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5889999999999987554433
No 319
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.33 E-value=1.4 Score=32.02 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=17.2
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
..-.|.++.+.||+||||+-+-
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl 46 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLI 46 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3446889999999999986443
No 320
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=75.32 E-value=1.4 Score=32.09 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=16.7
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
-.|.++.+.|++||||+-+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLR 44 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358899999999999864433
No 321
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=75.24 E-value=1.6 Score=31.48 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=17.2
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
....|.++.+.||+||||+-+-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl 42 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLL 42 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3346889999999999987443
No 322
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=75.20 E-value=1.4 Score=34.44 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=17.0
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+.++.+.|+||||||-+...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~ 53 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEA 53 (300)
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 477888999999999876554
No 323
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.16 E-value=1.5 Score=31.96 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=17.6
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
..-.|.++.+.|++||||+-+-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~ 46 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLR 46 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHH
Confidence 33468999999999999864433
No 324
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=75.00 E-value=1.5 Score=31.73 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=16.1
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|..+.+.|++||||+-+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTT 47 (218)
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 33588999999999998643
No 325
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=74.94 E-value=1.6 Score=32.30 Aligned_cols=18 Identities=6% Similarity=-0.273 Sum_probs=15.2
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++.+.||+||||+-.
T Consensus 12 ~Ge~~~l~G~NGsGKSTL 29 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTL 29 (213)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 588999999999998643
No 326
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=74.94 E-value=1.8 Score=31.37 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.9
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
-.|.++.+.||+||||+-+-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLK 48 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468999999999999864433
No 327
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=74.89 E-value=1.8 Score=31.88 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 24 i~~Ge~~~i~G~nGsGKST 42 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKST 42 (236)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468999999999999863
No 328
>PRK10536 hypothetical protein; Provisional
Probab=74.83 E-value=1.3 Score=35.72 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.6
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
...+++.||+|||||=
T Consensus 74 ~~lV~i~G~aGTGKT~ 89 (262)
T PRK10536 74 KQLIFATGEAGCGKTW 89 (262)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3488999999999983
No 329
>PRK13948 shikimate kinase; Provisional
Probab=74.74 E-value=1.7 Score=32.37 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
..+.+++.|.+||||+-.
T Consensus 9 ~~~~I~LiG~~GsGKSTv 26 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRI 26 (182)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 357889999999999743
No 330
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.74 E-value=1.8 Score=31.59 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=19.1
Q ss_pred cccccceEEecCCCCCCCCCCceee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
..-.|..+.+.||+||||+-+-.++
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i 47 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLL 47 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3346889999999999987655444
No 331
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=74.64 E-value=1.6 Score=32.40 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.7
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.-.|.++.+.|++||||+-+-
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl 49 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFL 49 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHH
Confidence 346889999999999986443
No 332
>PRK06835 DNA replication protein DnaC; Validated
Probab=74.59 E-value=1.2 Score=36.17 Aligned_cols=16 Identities=19% Similarity=-0.070 Sum_probs=13.6
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
.-|++.|+||+|||=.
T Consensus 184 ~~Lll~G~~GtGKThL 199 (329)
T PRK06835 184 ENLLFYGNTGTGKTFL 199 (329)
T ss_pred CcEEEECCCCCcHHHH
Confidence 5688999999999853
No 333
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=74.58 E-value=1.6 Score=32.04 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.7
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
..-.|.++.+.||+||||+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKS 47 (226)
T cd03234 29 HVESGQVMAILGSSGSGKT 47 (226)
T ss_pred EEcCCeEEEEECCCCCCHH
Confidence 3346889999999999984
No 334
>PRK10869 recombination and repair protein; Provisional
Probab=74.53 E-value=0.98 Score=38.97 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=18.2
Q ss_pred cccceEEecCCCCCCCCCCceeeeee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMIIDS 94 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~~~~ 94 (101)
|..+.-+++||+|+|| |+++|+
T Consensus 20 f~~glnvitGetGaGK----S~ildA 41 (553)
T PRK10869 20 FQSGMTVITGETGAGK----SIAIDA 41 (553)
T ss_pred cCCCcEEEECCCCCCh----HHHHHH
Confidence 6788999999999999 566653
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=74.45 E-value=1.4 Score=34.59 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=13.6
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
.+++++.|+||+|||-
T Consensus 72 ~~vi~l~G~~G~GKTT 87 (272)
T TIGR00064 72 PNVILFVGVNGVGKTT 87 (272)
T ss_pred CeEEEEECCCCCcHHH
Confidence 5778888999999984
No 336
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=74.38 E-value=1.7 Score=32.35 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
+-.|.++.+.||+||||+-
T Consensus 23 i~~Ge~~~i~G~nGsGKST 41 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKST 41 (252)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 337
>PLN02674 adenylate kinase
Probab=74.35 E-value=1.5 Score=34.60 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=13.4
Q ss_pred ceEEecCCCCCCCCCCce
Q psy2779 72 GRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~ 89 (101)
..+++-|||||||+-...
T Consensus 32 ~~i~l~G~PGsGKgT~a~ 49 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSP 49 (244)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 457789999999974433
No 338
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=74.26 E-value=1.5 Score=34.59 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=20.2
Q ss_pred cccccccceEEecCCCCCCCCCCcee
Q psy2779 65 SHSLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 65 ~~~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
..++..+..+++.|.|||||+-.-.+
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~ 152 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRM 152 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHH
Confidence 34566788999999999999865443
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=74.25 E-value=1.6 Score=35.84 Aligned_cols=18 Identities=17% Similarity=-0.023 Sum_probs=15.3
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
...++++.|+||+|||-.
T Consensus 139 ~~~vi~~~G~~GvGKTTt 156 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTT 156 (336)
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 367999999999999853
No 340
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=74.19 E-value=0.92 Score=40.82 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=12.9
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
..-+|+.||||||||-
T Consensus 194 ~~n~lL~G~pGvGKT~ 209 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTA 209 (852)
T ss_pred CCceEEEcCCCCCHHH
Confidence 4566789999999973
No 341
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.18 E-value=1.6 Score=31.53 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.3
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.||+|+||+-+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL 42 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTL 42 (213)
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 33688999999999998743
No 342
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=74.09 E-value=1.4 Score=31.38 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=14.4
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
...+|+.||||+||+-+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLA 31 (188)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999987543
No 343
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.06 E-value=1.4 Score=31.81 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=14.1
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.| ++.+.||+||||+-.
T Consensus 25 ~g-~~~i~G~nGsGKSTL 41 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTL 41 (211)
T ss_pred CC-cEEEECCCCCCHHHH
Confidence 46 889999999998644
No 344
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.06 E-value=1.6 Score=32.07 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.7
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 23 i~~Ge~~~l~G~nGsGKST 41 (235)
T cd03261 23 VRRGEILAIIGPSGSGKST 41 (235)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 345
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=74.04 E-value=1.6 Score=32.45 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.8
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|..+.+.|++||||+-
T Consensus 28 ~Ge~~~i~G~nGsGKST 44 (253)
T TIGR02323 28 PGEVLGIVGESGSGKST 44 (253)
T ss_pred CCcEEEEECCCCCCHHH
Confidence 58899999999999863
No 346
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=74.04 E-value=1.6 Score=33.13 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=16.4
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.||+||||+-+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTL 43 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTL 43 (255)
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34689999999999998643
No 347
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.04 E-value=1.6 Score=32.25 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=16.7
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.-.|.++.+.||+||||+-+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL 44 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTL 44 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 334688999999999998643
No 348
>PRK08760 replicative DNA helicase; Provisional
Probab=74.02 E-value=1.9 Score=36.50 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=21.3
Q ss_pred cccccceEEecCCCCCCCCCCceeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+-.|-.++++|+||.|||-|.-.+.
T Consensus 225 G~~~G~LivIaarPg~GKTafal~iA 250 (476)
T PRK08760 225 GLQPTDLIILAARPAMGKTTFALNIA 250 (476)
T ss_pred CCCCCceEEEEeCCCCChhHHHHHHH
Confidence 46678899999999999998875544
No 349
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=74.00 E-value=1.6 Score=31.94 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=17.0
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.-.|.++.+.||+||||+-+-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFN 44 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHH
Confidence 3368899999999999864433
No 350
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=73.95 E-value=1.6 Score=32.67 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=14.6
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
+.+++.||+|+||+-+
T Consensus 30 ~~~~itGpNg~GKStl 45 (213)
T cd03281 30 SIMVITGPNSSGKSVY 45 (213)
T ss_pred eEEEEECCCCCChHHH
Confidence 8899999999999866
No 351
>PRK13946 shikimate kinase; Provisional
Probab=73.87 E-value=1.6 Score=31.43 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=14.8
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
..+.+++.|.|||||+-.
T Consensus 9 ~~~~I~l~G~~GsGKsti 26 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTV 26 (184)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456789999999999754
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=73.78 E-value=1.5 Score=35.38 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=14.6
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+.++++.||||+|||-
T Consensus 113 ~~~vi~lvGpnGsGKTT 129 (318)
T PRK10416 113 KPFVILVVGVNGVGKTT 129 (318)
T ss_pred CCeEEEEECCCCCcHHH
Confidence 47889999999999973
No 353
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=73.68 E-value=1.7 Score=31.50 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.||+||||+
T Consensus 25 i~~Ge~~~i~G~nGsGKS 42 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKT 42 (220)
T ss_pred EcCCcEEEEECCCCCCHH
Confidence 336889999999999985
No 354
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=73.61 E-value=1.2 Score=32.19 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.4
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
+.....++.||+|+|||-
T Consensus 22 ~~~~~~~i~G~NGsGKS~ 39 (220)
T PF02463_consen 22 FSPGLNVIVGPNGSGKSN 39 (220)
T ss_dssp TTSSEEEEEESTTSSHHH
T ss_pred cCCCCEEEEcCCCCCHHH
Confidence 467799999999999963
No 355
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=73.52 E-value=1.7 Score=32.04 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.4
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+.||+||||+-
T Consensus 33 ~~Ge~~~l~G~nGsGKST 50 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKST 50 (233)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 358899999999999863
No 356
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=73.48 E-value=1.3 Score=39.77 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=13.1
Q ss_pred EEecCCCCCCCCCCc
Q psy2779 74 AVAGGRTKCPKPPNT 88 (101)
Q Consensus 74 ll~~G~p~~g~~~~~ 88 (101)
+|++|+||+||+-|.
T Consensus 266 ILIAG~PGaGKsTFa 280 (604)
T COG1855 266 ILIAGAPGAGKSTFA 280 (604)
T ss_pred eEEecCCCCChhHHH
Confidence 569999999999875
No 357
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=73.36 E-value=1.2 Score=35.48 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=23.2
Q ss_pred ccc-hHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 39 LVG-QQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 39 lVG-Q~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
++| |+.+.+- +..+ ++++++ -.++|+.||+|+||+-
T Consensus 7 i~~~q~~~~~~---L~~~-------~~~~~l--~ha~Lf~G~~G~gk~~ 43 (329)
T PRK08058 7 LTALQPVVVKM---LQNS-------IAKNRL--SHAYLFEGAKGTGKKA 43 (329)
T ss_pred HHhhHHHHHHH---HHHH-------HHcCCC--CceEEEECCCCCCHHH
Confidence 456 7777662 2333 333332 4578999999999863
No 358
>KOG3347|consensus
Probab=73.33 E-value=2 Score=33.59 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=15.5
Q ss_pred cceEEecCCCCCCCCCCcee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~ 90 (101)
+--+|++|-|||||+-+.+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~ 26 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAER 26 (176)
T ss_pred CCCEEEeCCCCCCchhHHHH
Confidence 33478999999999876543
No 359
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=73.31 E-value=1.7 Score=31.81 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.6
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|..+.+.|++||||+-+-.+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~ 56 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRV 56 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHH
Confidence 34688999999999998754433
No 360
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=73.21 E-value=1.7 Score=31.68 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=15.2
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+.||+||||+-
T Consensus 24 ~~Ge~~~l~G~nGsGKST 41 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTT 41 (232)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 358899999999999863
No 361
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=73.12 E-value=1.6 Score=31.98 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++.+.|++||||+-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (238)
T cd03249 28 PGKTVALVGSSGCGKSTV 45 (238)
T ss_pred CCCEEEEEeCCCCCHHHH
Confidence 689999999999998643
No 362
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=73.11 E-value=1.4 Score=34.27 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=13.9
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+.=+++.|+||+|||=
T Consensus 104 ~~~nl~l~G~~G~GKTh 120 (254)
T COG1484 104 RGENLVLLGPPGVGKTH 120 (254)
T ss_pred cCCcEEEECCCCCcHHH
Confidence 45668899999999973
No 363
>PRK09165 replicative DNA helicase; Provisional
Probab=73.09 E-value=1.9 Score=36.64 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.3
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+-.|..++++|+||.|||-|.-
T Consensus 213 G~~~g~livIaarpg~GKT~~al 235 (497)
T PRK09165 213 GLHPSDLIILAGRPSMGKTALAT 235 (497)
T ss_pred CCCCCceEEEEeCCCCChHHHHH
Confidence 56667889999999999998764
No 364
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=73.08 E-value=1.8 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=18.1
Q ss_pred ccccceEEecCCCCCCCCCCceee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.-.|..+.+.||+||||+-+-.++
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i 55 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNAL 55 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHH
Confidence 336889999999999997544433
No 365
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=73.03 E-value=1.8 Score=31.54 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
...|.++.+.|++||||+-
T Consensus 31 i~~Ge~~~l~G~nGsGKST 49 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKST 49 (224)
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3368999999999999863
No 366
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=72.96 E-value=2 Score=31.08 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
...|.++.+.|++||||+-
T Consensus 24 i~~Ge~~~l~G~nGsGKST 42 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTS 42 (204)
T ss_pred ECCCcEEEEECCCCCCHHH
Confidence 3468899999999999863
No 367
>PRK10908 cell division protein FtsE; Provisional
Probab=72.95 E-value=1.8 Score=31.57 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=17.3
Q ss_pred cccceEEecCCCCCCCCCCcee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
-.|.++.+.||+||||+-+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~ 47 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKL 47 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3688999999999998744433
No 368
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.94 E-value=2.2 Score=31.14 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=16.9
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.-.|.++.+.||+||||+-+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl 45 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLV 45 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346889999999999986443
No 369
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.87 E-value=1.1 Score=39.79 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=19.4
Q ss_pred cccceEEecCCCCCCCCCCceeeeee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMIIDS 94 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~~~~ 94 (101)
|..+.-+++|+||+|| ||+||.
T Consensus 20 F~~GltVlTGETGAGK----SIiidA 41 (557)
T COG0497 20 FEKGLTVLTGETGAGK----SIIIDA 41 (557)
T ss_pred ccCCceEEecCCCCcH----hHHHHH
Confidence 6788999999999999 788875
No 370
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=72.86 E-value=1.1 Score=39.11 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=25.9
Q ss_pred cCcccchHHHHhhcceeeeccc--ceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKS--FQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~--~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
-+-+.|...+.+...=+++.-. -.|.+. ..+ +. +-+|+.||||||||-.
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~-~~~-~~-~gill~G~~G~GKt~~ 201 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKL-GGK-IP-KGVLMVGPPGTGKTLL 201 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhc-CCC-CC-CcEEEECCCCCCHHHH
Confidence 3446677777766655555400 000000 001 11 2288999999998754
No 371
>PLN02840 tRNA dimethylallyltransferase
Probab=72.85 E-value=1.8 Score=37.03 Aligned_cols=20 Identities=20% Similarity=0.037 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.+.++++.||||||||-.
T Consensus 18 ~~~~~vi~I~GptgsGKTtl 37 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRL 37 (421)
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 33467899999999999753
No 372
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.85 E-value=1.8 Score=32.21 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.7
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTL 46 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTL 46 (253)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 373
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=72.82 E-value=1.7 Score=30.59 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.7
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
|+-+|+.+|||+|||
T Consensus 36 ~~~~li~~~TG~GKT 50 (203)
T cd00268 36 GRDVIGQAQTGSGKT 50 (203)
T ss_pred CCcEEEECCCCCcHH
Confidence 677899999999998
No 374
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.80 E-value=1.8 Score=31.21 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=17.2
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
...|.++.+.||+||||+-+-.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~ 42 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLN 42 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3468899999999999864433
No 375
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=72.79 E-value=2.2 Score=31.62 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.8
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+-.|.++.+.||+||||+-+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL 42 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTL 42 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 344688999999999998643
No 376
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=72.77 E-value=1.8 Score=31.86 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.8
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+..|..+.+.||+||||+-+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTL 41 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTL 41 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 344688999999999998643
No 377
>KOG0990|consensus
Probab=72.74 E-value=1.7 Score=37.01 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=13.4
Q ss_pred eEEecCCCCCCCCCCc
Q psy2779 73 RAVAGGRTKCPKPPNT 88 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~ 88 (101)
-+|.-||||+||||-+
T Consensus 64 h~L~YgPPGtGktsti 79 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTI 79 (360)
T ss_pred cccccCCCCCCCCCch
Confidence 5788999999999843
No 378
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=72.66 E-value=2.3 Score=30.70 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=17.6
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
..-.|.++.+.|++||||+-+-.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~ 45 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLK 45 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHH
Confidence 33468899999999999864433
No 379
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.66 E-value=1.8 Score=37.52 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=16.9
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|+++++.||+|+|||-...+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 478999999999999854433
No 380
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=72.50 E-value=1.9 Score=30.59 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=18.2
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
....|..+.+.|++||||+-+-.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~ 46 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRA 46 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHH
Confidence 344688999999999998754443
No 381
>PRK12338 hypothetical protein; Provisional
Probab=72.50 E-value=1.8 Score=35.67 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=14.8
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
-.+++++|+|||||+-..
T Consensus 4 p~ii~i~G~sGsGKST~a 21 (319)
T PRK12338 4 PYVILIGSASGIGKSTIA 21 (319)
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 468999999999987543
No 382
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=72.49 E-value=1.7 Score=38.63 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=19.1
Q ss_pred cceEEecCCCCCCCCCCceeeeeee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
.+..++.|+||||||.....+++.|
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999997655555444
No 383
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=72.46 E-value=1.2 Score=32.13 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCCCc
Q psy2779 73 RAVAGGRTKCPKPPNT 88 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~ 88 (101)
=+|++|.||+|||=+.
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5789999999987543
No 384
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=72.44 E-value=1.8 Score=31.87 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=15.9
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.|++||||+-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTL 43 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTL 43 (240)
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3688999999999998643
No 385
>PRK06904 replicative DNA helicase; Validated
Probab=72.39 E-value=2 Score=36.41 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=20.3
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.+-.|..++++|+||.|||-|.-
T Consensus 216 ~Gl~~G~LiiIaarPg~GKTafal 239 (472)
T PRK06904 216 AGLQPSDLIIVAARPSMGKTTFAM 239 (472)
T ss_pred hccCCCcEEEEEeCCCCChHHHHH
Confidence 456678899999999999998763
No 386
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.24 E-value=1.8 Score=31.51 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=15.3
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+.+.||+||||+-+
T Consensus 32 ~Ge~~~i~G~nGsGKSTL 49 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTL 49 (202)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 588999999999998643
No 387
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.12 E-value=1.9 Score=30.61 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=16.3
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
....|-++.+.||+|||||-
T Consensus 22 ~i~~G~~~~i~G~nGsGKST 41 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKST 41 (178)
T ss_pred EEcCCCEEEEECCCCCCHHH
Confidence 34468899999999999863
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.12 E-value=2.5 Score=29.18 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.4
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
....|..+.+.|++|+||+-
T Consensus 21 ~i~~g~~~~i~G~nGsGKSt 40 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKST 40 (157)
T ss_pred EEcCCCEEEEECCCCCCHHH
Confidence 44468899999999999863
No 389
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.08 E-value=1.9 Score=31.43 Aligned_cols=19 Identities=21% Similarity=0.031 Sum_probs=15.8
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTL 42 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTT 42 (220)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 390
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=72.05 E-value=1.9 Score=30.71 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=15.2
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|..+.+.|++||||+-
T Consensus 24 ~~G~~~~i~G~nGsGKST 41 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTE 41 (182)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 358899999999999863
No 391
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=71.93 E-value=1.9 Score=31.28 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|..+.+.||+||||+-
T Consensus 21 i~~Ge~~~i~G~nGsGKST 39 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKST 39 (213)
T ss_pred EeCCcEEEEECCCCCCHHH
Confidence 3369999999999999853
No 392
>PRK06851 hypothetical protein; Provisional
Probab=71.91 E-value=1.7 Score=36.30 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=18.5
Q ss_pred cceEEecCCCCCCCCCCceeeeeee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
-+..++.|+|||||+-....+...+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4678999999999986555444443
No 393
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=71.90 E-value=1.9 Score=31.90 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=18.0
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|..+.+.||+||||+-+-.++
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l 51 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSI 51 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 35889999999999987554444
No 394
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=71.72 E-value=2 Score=31.81 Aligned_cols=19 Identities=16% Similarity=-0.006 Sum_probs=15.8
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTL 45 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTL 45 (250)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 395
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=71.69 E-value=1.9 Score=31.70 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=17.2
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.-.|.++.+.||+||||+-+-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLG 49 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 3368899999999999874433
No 396
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=71.68 E-value=2 Score=31.73 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=16.3
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.||+||||+-+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL 45 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTT 45 (241)
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 34688999999999998643
No 397
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=71.64 E-value=2 Score=31.11 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=16.8
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
-.|.++.+.||+||||+-+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLL 48 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 368899999999999874433
No 398
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=71.47 E-value=2.5 Score=30.37 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.2
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.||+||||+-
T Consensus 22 ~i~~Ge~~~i~G~nGsGKST 41 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTT 41 (198)
T ss_pred EEcCCcEEEEECCCCCCHHH
Confidence 34468899999999999953
No 399
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.45 E-value=2 Score=31.85 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=17.4
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
..-.|..+.+.|++||||+-+-.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLR 47 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHH
Confidence 33468899999999999864433
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.39 E-value=2 Score=36.93 Aligned_cols=19 Identities=21% Similarity=0.011 Sum_probs=16.2
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
...++++++.||+|||||-
T Consensus 203 ~~~~~ii~lvGptGvGKTT 221 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTT 221 (407)
T ss_pred ecCCeEEEEECCCCCCHHH
Confidence 3468999999999999984
No 401
>PRK06321 replicative DNA helicase; Provisional
Probab=71.22 E-value=2.3 Score=36.23 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=21.1
Q ss_pred cccccceEEecCCCCCCCCCCceeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+-.|-.++++|+||.|||-|...+.
T Consensus 222 Gl~~G~LiiiaarPgmGKTafal~ia 247 (472)
T PRK06321 222 GFSPSNLMILAARPAMGKTALALNIA 247 (472)
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHH
Confidence 56678899999999999998765443
No 402
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.12 E-value=2.1 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=15.7
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|..+.+.|++||||+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSt 41 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTT 41 (173)
T ss_pred EcCCcEEEEECCCCCCHHH
Confidence 3468899999999999853
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.07 E-value=3.2 Score=31.88 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.7
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
|..+.-++.||+||||+
T Consensus 19 ~~~~~~~i~G~nGsGKS 35 (276)
T cd03241 19 FEEGLTVLTGETGAGKS 35 (276)
T ss_pred eCCCeEEEEcCCCCCHH
Confidence 46778899999999995
No 404
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=71.04 E-value=2 Score=32.95 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=15.3
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+.||+||||+-
T Consensus 35 ~~Ge~~~l~G~nGsGKST 52 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKST 52 (289)
T ss_pred eCCCEEEEECCCCCCHHH
Confidence 358899999999999863
No 405
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=71.03 E-value=0.78 Score=32.52 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=16.3
Q ss_pred ceEEecCCCCCCCCCCceeee
Q psy2779 72 GRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~~~~ 92 (101)
..+++.|+|||||+.+...+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~ 62 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT 62 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 367789999999988765444
No 406
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=71.02 E-value=1.9 Score=31.53 Aligned_cols=14 Identities=21% Similarity=0.090 Sum_probs=11.3
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
.-+||.|++||||.
T Consensus 23 ~pVlI~GE~GtGK~ 36 (168)
T PF00158_consen 23 LPVLITGETGTGKE 36 (168)
T ss_dssp S-EEEECSTTSSHH
T ss_pred CCEEEEcCCCCcHH
Confidence 56789999999974
No 407
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=70.93 E-value=2.1 Score=31.55 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=16.8
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|..+.+.|++||||+-+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~ 46 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSAT 46 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 588999999999998754443
No 408
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=70.91 E-value=2.1 Score=31.44 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=17.8
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|.++.+.|++||||+-+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKL 47 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34688999999999999744333
No 409
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=70.78 E-value=1.8 Score=34.65 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=15.5
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
..++++.|++|||||-...
T Consensus 6 ~~~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALR 24 (288)
T ss_pred ceEEEEECCCCCcHHHHHH
Confidence 4688999999999986544
No 410
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=70.77 E-value=2.1 Score=32.36 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=18.3
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|.++.+.|++||||+-+-.++
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l 57 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKML 57 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 35889999999999997655444
No 411
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.68 E-value=2.1 Score=31.86 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.2
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.|++||||+-+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL 46 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTV 46 (252)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34688999999999998643
No 412
>PRK03846 adenylylsulfate kinase; Provisional
Probab=70.65 E-value=2 Score=31.17 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=15.0
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+.+.|.+||||+-.
T Consensus 23 ~~~~i~i~G~~GsGKSTl 40 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTV 40 (198)
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 477899999999999643
No 413
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=70.54 E-value=2.5 Score=36.93 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.2
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
|.+++.+|.||+||||+-.
T Consensus 21 f~~~~~~i~G~NGsGKS~l 39 (1179)
T TIGR02168 21 FDKGITGIVGPNGCGKSNI 39 (1179)
T ss_pred ecCCcEEEECCCCCChhHH
Confidence 5678999999999999743
No 414
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=70.51 E-value=2.2 Score=33.36 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=16.6
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|..+++.||+|||||-.-.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~ 35 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQS 35 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 588889999999999844333
No 415
>CHL00095 clpC Clp protease ATP binding subunit
Probab=70.51 E-value=1.8 Score=38.77 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=12.7
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
..-+|+.||||||||-
T Consensus 200 ~~n~lL~G~pGvGKTa 215 (821)
T CHL00095 200 KNNPILIGEPGVGKTA 215 (821)
T ss_pred cCCeEEECCCCCCHHH
Confidence 3456799999999974
No 416
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=70.46 E-value=2.1 Score=32.77 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.4
Q ss_pred cccceEEecCCCCCCCCCCc
Q psy2779 69 FRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~ 88 (101)
-.|.++.+.||+||||+-+-
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLl 55 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLL 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35889999999999987443
No 417
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=70.44 E-value=2.2 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=17.4
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
...|..+.+.||+||||+-+-.
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~ 58 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVA 58 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3468899999999999875443
No 418
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=70.43 E-value=2.2 Score=31.71 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.|++||||+
T Consensus 24 i~~Ge~~~i~G~nGsGKS 41 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKS 41 (247)
T ss_pred ECCCCEEEEECCCCCCHH
Confidence 335889999999999985
No 419
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=70.39 E-value=2.2 Score=31.45 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.||+||||+
T Consensus 9 i~~Ge~~~i~G~nGsGKS 26 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKS 26 (230)
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 336889999999999986
No 420
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=70.38 E-value=2.2 Score=31.65 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.7
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|.++.+.||+||||+-.-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRT 48 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 588999999999998644433
No 421
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.30 E-value=2.7 Score=31.95 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=15.9
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTL 51 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTI 51 (271)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3688999999999998643
No 422
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.12 E-value=2.4 Score=38.14 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.7
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
+.|..++-||.||+|+|||
T Consensus 21 ~~f~~gi~lI~G~nGsGKS 39 (908)
T COG0419 21 KLFDSGIFLIVGPNGAGKS 39 (908)
T ss_pred ecCCCCeEEEECCCCCcHH
Confidence 3578999999999999985
No 423
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.01 E-value=2.3 Score=31.51 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.6
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-.|.++.+.||+||||+-+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL 43 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTT 43 (242)
T ss_pred EECCCCEEEEECCCCCCHHHH
Confidence 334688999999999998643
No 424
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=69.97 E-value=2.2 Score=31.37 Aligned_cols=19 Identities=21% Similarity=0.018 Sum_probs=15.7
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.|++||||+-+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTL 44 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTM 44 (242)
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3688999999999998643
No 425
>PRK10865 protein disaggregation chaperone; Provisional
Probab=69.96 E-value=1.9 Score=39.21 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=12.9
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
..-+|+.||||||||-
T Consensus 199 ~~n~lL~G~pGvGKT~ 214 (857)
T PRK10865 199 KNNPVLIGEPGVGKTA 214 (857)
T ss_pred cCceEEECCCCCCHHH
Confidence 4467789999999973
No 426
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=69.92 E-value=2.7 Score=31.17 Aligned_cols=19 Identities=11% Similarity=-0.144 Sum_probs=15.9
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTV 47 (255)
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3688999999999998643
No 427
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=69.83 E-value=2.3 Score=31.01 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=15.7
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|-.+.+.||+||||+-
T Consensus 23 i~~Ge~~~i~G~nGsGKST 41 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKST 41 (223)
T ss_pred EcCCcEEEEECCCCCCHHH
Confidence 3368899999999999863
No 428
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=69.73 E-value=2.2 Score=31.42 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++.+.|++||||+-+
T Consensus 5 ~Ge~~~l~G~nGsGKSTL 22 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTL 22 (223)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 488999999999998643
No 429
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=69.72 E-value=2.5 Score=31.81 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
..++.++.||+||||+-.
T Consensus 21 ~~~~~~i~G~NGsGKStl 38 (247)
T cd03275 21 FDRFTCIIGPNGSGKSNL 38 (247)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 345889999999999643
No 430
>KOG2373|consensus
Probab=69.69 E-value=2.7 Score=37.05 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=19.8
Q ss_pred ccccccccceEEecCCCCCCCCCCce
Q psy2779 64 KSHSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 64 ~~~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
|-|+ .|-.-+++||+|+|||-|-|
T Consensus 268 kGhR--~GElTvlTGpTGsGKTTFls 291 (514)
T KOG2373|consen 268 KGHR--PGELTVLTGPTGSGKTTFLS 291 (514)
T ss_pred ccCC--CCceEEEecCCCCCceeEeh
Confidence 4455 48889999999999998866
No 431
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=69.52 E-value=1.6 Score=32.32 Aligned_cols=20 Identities=10% Similarity=-0.147 Sum_probs=16.3
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
..+++.+.|++|+|||-...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~ 37 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLAR 37 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeee
Confidence 47899999999999975443
No 432
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=69.44 E-value=2.2 Score=31.83 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=17.5
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-.|.++-+.|+.||||+-.
T Consensus 17 ~i~~Ge~~~l~G~sGsGKSTL 37 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSL 37 (226)
T ss_pred ecCCCcEEEEEcCCCCCHHHH
Confidence 344699999999999999865
No 433
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=69.40 E-value=2.5 Score=31.71 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=15.1
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
|..+...+-||+||||+-
T Consensus 23 ~~~~~~~IvG~NGsGKSt 40 (251)
T cd03273 23 FDPQFNAITGLNGSGKSN 40 (251)
T ss_pred CCCCeEEEECCCCCCHHH
Confidence 457888899999999963
No 434
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.38 E-value=2.3 Score=31.84 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=16.9
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.-.|.++.+.|++||||+-+-.
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIK 56 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3368899999999999864433
No 435
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=69.27 E-value=2.4 Score=31.81 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++.+.|++||||+-+
T Consensus 31 ~Ge~~~i~G~nGsGKSTL 48 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTL 48 (258)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 588999999999998643
No 436
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=69.24 E-value=3 Score=30.31 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=17.5
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|.++.+.||+||||+-+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLA 46 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 33688999999999998644333
No 437
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=69.24 E-value=2.2 Score=41.04 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=29.2
Q ss_pred cccCcccchHHHHhhc-ceeeecccceeeeeccccccccceEEecCCCCCCCCCCceee
Q psy2779 34 EMAAGLVGQQAAREVS-RAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAa-GIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+..+-|++.++-.+.. .++.+. ++... .+.+|++.|+||||||--+-.+
T Consensus 752 YVPD~LPhREeEIeeLasfL~pa-------Ikgsg--pnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESG-------IKQSG--SNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHH-------HhcCC--CCceEEEECCCCCCHHHHHHHH
Confidence 3445677777655544 344444 22111 3567889999999998654433
No 438
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=69.21 E-value=2.4 Score=31.40 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.8
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTL 27 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTL 27 (230)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 439
>PHA02653 RNA helicase NPH-II; Provisional
Probab=69.20 E-value=2.5 Score=37.82 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=37.2
Q ss_pred cCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccc----------cccccceEEecCCCCCCCCC
Q psy2779 25 GLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSH----------SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 25 GLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~----------~~~~g~~ll~~G~p~~g~~~ 86 (101)
||=+-|+.....+.-+|| .-...|+.=..+.|.-+...|- ....|+.+|+.|+||||||.
T Consensus 125 g~~~~~n~~~~~~~~~~~--~~~~~~~~~n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTt 194 (675)
T PHA02653 125 GLVEGGNALGIFSNNVGS--KKDTIGILGNPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTS 194 (675)
T ss_pred hHhhcCceeeeeccCccc--ccccccccCCCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchh
Confidence 344567776666666777 3455666644444433222221 12368899999999999995
No 440
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=69.15 E-value=2.4 Score=32.19 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.6
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-.|.++.+.||+||||+-+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL 43 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTL 43 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 334688999999999998643
No 441
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=69.14 E-value=2 Score=33.54 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=14.9
Q ss_pred eEEecCCCCCCCCCCceeee
Q psy2779 73 RAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~~~~~ 92 (101)
.++++|+||+|||-.-.-++
T Consensus 7 ki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred EEEEeCCCCccHHHHHHHHH
Confidence 36799999999986554443
No 442
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=69.11 E-value=2.4 Score=30.52 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=15.9
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
..|.++.+.|++||||+-+
T Consensus 32 ~~G~~~~i~G~nGsGKSTL 50 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTL 50 (207)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 443
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=69.05 E-value=2.4 Score=32.23 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=15.8
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTL 49 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTI 49 (280)
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 444
>PRK12608 transcription termination factor Rho; Provisional
Probab=69.03 E-value=2.4 Score=36.01 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=16.7
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|-..|+.|+||||||-.-.|
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~ 152 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQ 152 (380)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 367788999999999865544
No 445
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=68.98 E-value=1.9 Score=35.32 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=14.5
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
-++|++|++||||++..
T Consensus 93 ~iIlI~G~sgsGKStlA 109 (301)
T PRK04220 93 IIILIGGASGVGTSTIA 109 (301)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 47899999999999854
No 446
>PRK08506 replicative DNA helicase; Provisional
Probab=68.96 E-value=2.7 Score=35.48 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=22.6
Q ss_pred cccccceEEecCCCCCCCCCCceeeeeee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMIIDSW 95 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~~~~~ 95 (101)
..-.|-.++++|+||.|||-|..-+...|
T Consensus 188 G~~~G~LivIaarpg~GKT~fal~ia~~~ 216 (472)
T PRK08506 188 GFNKGDLIIIAARPSMGKTTLCLNMALKA 216 (472)
T ss_pred CCCCCceEEEEcCCCCChHHHHHHHHHHH
Confidence 55568899999999999998876554443
No 447
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=68.87 E-value=1.6 Score=34.77 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.5
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
....+++.|++||||+
T Consensus 22 ~~~r~vL~G~~GsGKS 37 (309)
T PF10236_consen 22 KNNRYVLTGERGSGKS 37 (309)
T ss_pred CceEEEEECCCCCCHH
Confidence 3567789999999996
No 448
>KOG0742|consensus
Probab=68.82 E-value=2.4 Score=38.11 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=13.8
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
|-+|+.||||||||-|.
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 45779999999999653
No 449
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=68.73 E-value=2.7 Score=30.83 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.0
Q ss_pred cceEEecCCCCCCCCCCcee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~ 90 (101)
|.++.+.||+||||+-.-..
T Consensus 28 ~~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDA 47 (213)
T ss_pred cCEEEEECCCCCCHHHHHHH
Confidence 66899999999999855433
No 450
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=68.69 E-value=2.3 Score=31.44 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.4
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|+.+|+.|++|+||+-.
T Consensus 13 ~g~gvLi~G~sG~GKStl 30 (149)
T cd01918 13 GGIGVLITGPSGIGKSEL 30 (149)
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 588899999999999743
No 451
>PHA02624 large T antigen; Provisional
Probab=68.66 E-value=1 Score=40.79 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=19.5
Q ss_pred cccceEEecCCCCCCCCCCceeee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
-.++.+|+.|||+||||-|+.-++
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl 452 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALL 452 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999998875443
No 452
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=68.62 E-value=2.5 Score=31.74 Aligned_cols=21 Identities=14% Similarity=-0.054 Sum_probs=16.9
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
-.|.++.+.|++|||||-+-.
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~ 40 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLA 40 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358899999999999975433
No 453
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=68.61 E-value=2.5 Score=30.63 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=15.4
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+.|++||||+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSt 41 (200)
T cd03217 24 KKGEVHALMGPNGSGKST 41 (200)
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 368899999999999863
No 454
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=68.61 E-value=2.5 Score=31.27 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=17.7
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|.++.+.||+||||+-+-.+
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~ 67 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRL 67 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 33688999999999999754433
No 455
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=68.58 E-value=2.6 Score=29.80 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=16.7
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-.|-.+.+.|++||||+-+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL 42 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTL 42 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHH
Confidence 344688999999999998643
No 456
>PRK04132 replication factor C small subunit; Provisional
Probab=68.56 E-value=3.3 Score=38.33 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=24.8
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+-+|||+...+-.--. ++++++.. +++.||||+||.
T Consensus 18 f~dIiGqe~i~~~Lk~~----------i~~~~i~h---~l~~g~~g~~~c 54 (846)
T PRK04132 18 LDDIVGQEHIVKRLKHY----------VKTGSMPH---LLFAGPPGVGKC 54 (846)
T ss_pred HHHhcCcHHHHHHHHHH----------HHcCCCCe---EEEECCCCCCcc
Confidence 46799999998843332 23333222 569999999994
No 457
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=68.51 E-value=3.8 Score=29.88 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=12.8
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
.+..++.||+|+||+
T Consensus 22 ~~~~~i~G~NGsGKS 36 (178)
T cd03239 22 NSFNAIVGPNGSGKS 36 (178)
T ss_pred CceEEEECCCCCCHH
Confidence 348889999999995
No 458
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.47 E-value=2.5 Score=31.50 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=17.7
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|.++.+.||+||||+-+-.++
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l 52 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCF 52 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35889999999999986544444
No 459
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=68.38 E-value=2.5 Score=31.90 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=17.7
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|.++.+.|++||||+-+-.++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i 48 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRAL 48 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 35889999999999987544433
No 460
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=68.35 E-value=2.5 Score=32.15 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.4
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+.+.||+||||+-.
T Consensus 37 ~Ge~~~i~G~nGsGKSTL 54 (268)
T PRK10419 37 SGETVALLGRSGCGKSTL 54 (268)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 588999999999998643
No 461
>PRK08840 replicative DNA helicase; Provisional
Probab=68.34 E-value=2.8 Score=35.61 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=20.9
Q ss_pred ccccccceEEecCCCCCCCCCCceee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+.+-.|..++++|+||.|||-|.-.+
T Consensus 212 ~G~~~g~LiviaarPg~GKTafalni 237 (464)
T PRK08840 212 AGLQGSDLIIVAARPSMGKTTFAMNL 237 (464)
T ss_pred cCCCCCceEEEEeCCCCchHHHHHHH
Confidence 35667899999999999999886433
No 462
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=68.16 E-value=2.6 Score=31.35 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=17.1
Q ss_pred cccceEEecCCCCCCCCCCcee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
-.|.++.+.|++|||||-+-.+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~ 66 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKI 66 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3688999999999998644333
No 463
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.15 E-value=2.5 Score=36.43 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+.++++.||+|||||-...
T Consensus 222 ~~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46788899999999985443
No 464
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.14 E-value=2.7 Score=32.21 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.5
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
|..+..++.||+|+|||
T Consensus 19 ~~~~~~~i~G~NGsGKS 35 (270)
T cd03242 19 FEPGVTVLVGENAQGKT 35 (270)
T ss_pred cCCCeEEEECCCCCCHH
Confidence 45678899999999995
No 465
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.13 E-value=2.6 Score=31.35 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=15.7
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|.++.+.||+||||+-+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTL 45 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTL 45 (241)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999998643
No 466
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=68.13 E-value=2.9 Score=31.36 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|+++++.||+|+||+-+
T Consensus 28 ~~~~~~l~G~n~~GKstl 45 (204)
T cd03282 28 SSRFHIITGPNMSGKSTY 45 (204)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 478999999999999753
No 467
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.11 E-value=3.3 Score=30.73 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=16.6
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+..|.++.+.|++||||+-.-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl 46 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFI 46 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346889999999999986433
No 468
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=68.09 E-value=2.2 Score=28.64 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=16.1
Q ss_pred ceEEecCCCCCCCCCCceeee
Q psy2779 72 GRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~~~~ 92 (101)
..+++.|++||||+-+..+.+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999987655544
No 469
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=68.02 E-value=2 Score=39.15 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=12.2
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
.-+|+.||||||||-
T Consensus 209 ~n~lLvG~pGvGKTa 223 (852)
T TIGR03345 209 NNPILTGEAGVGKTA 223 (852)
T ss_pred CceeEECCCCCCHHH
Confidence 356799999999973
No 470
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.91 E-value=3 Score=30.99 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=15.9
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
....|.++.+.||+||||+
T Consensus 26 ~i~~G~~~~i~G~nGsGKS 44 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKS 44 (251)
T ss_pred EEcCCCEEEEECCCCCCHH
Confidence 3446889999999999985
No 471
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=67.90 E-value=1.7 Score=38.14 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=29.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.-.++..-.++. +++.- +-|++||.|+|||-
T Consensus 15 F~evvGQe~v~~~L~nal~~-----------~ri~h-AYlfsG~RGvGKTt 53 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALEN-----------GRIAH-AYLFSGPRGVGKTT 53 (515)
T ss_pred HHHhcccHHHHHHHHHHHHh-----------Ccchh-hhhhcCCCCcCchh
Confidence 45679999999988777666 33333 45689999999985
No 472
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=67.85 E-value=2.4 Score=31.56 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=16.6
Q ss_pred cceEEecCCCCCCCCCCceee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~ 91 (101)
..++.+.|++|||||-+..++
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L 53 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFL 53 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 568889999999998765543
No 473
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=67.70 E-value=2.6 Score=32.53 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.2
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|.++.+.||+||||+-+-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~ 45 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLK 45 (272)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 58899999999999864433
No 474
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=67.70 E-value=2.6 Score=31.66 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.8
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|-++.+.||+||||+-+-.++
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l 59 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTF 59 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 36889999999999987554443
No 475
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=67.68 E-value=2.8 Score=34.42 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.5
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.||+|||||-
T Consensus 41 ~i~~Ge~~~llGpsGsGKST 60 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKST 60 (377)
T ss_pred EEcCCCEEEEECCCCCcHHH
Confidence 44468999999999999863
No 476
>KOG0064|consensus
Probab=67.62 E-value=2.9 Score=38.36 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.6
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|--||+.||+||||.
T Consensus 507 ~G~hLLItGPNGCGKS 522 (728)
T KOG0064|consen 507 PGMHLLITGPNGCGKS 522 (728)
T ss_pred CCceEEEECCCCccHH
Confidence 4778999999999963
No 477
>PLN02748 tRNA dimethylallyltransferase
Probab=67.58 E-value=2.5 Score=36.51 Aligned_cols=17 Identities=24% Similarity=0.063 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+.++++.|||||||+-.
T Consensus 22 ~~~i~i~GptgsGKs~l 38 (468)
T PLN02748 22 AKVVVVMGPTGSGKSKL 38 (468)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 66899999999999753
No 478
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.53 E-value=2.7 Score=31.26 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.2
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.|++||||+-+
T Consensus 28 i~~Ge~~~I~G~nGsGKSTL 47 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTF 47 (251)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 33588999999999998643
No 479
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=67.51 E-value=2.4 Score=32.93 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=13.7
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
..+|+.|+||+|||-+.
T Consensus 13 ~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTI 29 (220)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 55899999999997443
No 480
>KOG1969|consensus
Probab=67.51 E-value=2.9 Score=39.20 Aligned_cols=19 Identities=11% Similarity=-0.171 Sum_probs=16.1
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-..++|||+||||-|||-.
T Consensus 324 P~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred CccceEEeecCCCCChhHH
Confidence 3578999999999999853
No 481
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=67.45 E-value=2.6 Score=31.95 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|.++.+.||+||||+
T Consensus 38 ~Ge~~~i~G~NGsGKS 53 (267)
T PRK15112 38 EGQTLAIIGENGSGKS 53 (267)
T ss_pred CCCEEEEEcCCCCCHH
Confidence 5889999999999985
No 482
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.40 E-value=2.7 Score=31.84 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=15.8
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|-++.+.||+||||+-.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTL 51 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTI 51 (269)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3688999999999998633
No 483
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.32 E-value=2.7 Score=32.01 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.6
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|.++.+.||+||||+-+-.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~ 58 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRS 58 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34688999999999998744333
No 484
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=67.19 E-value=2.6 Score=36.98 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=11.1
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|.+++++| ||||||
T Consensus 15 ~g~~lV~Ag-pGSGKT 29 (672)
T PRK10919 15 TGPCLVLAG-AGSGKT 29 (672)
T ss_pred CCCEEEEec-CCCCHH
Confidence 366666655 999997
No 485
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=67.15 E-value=2.7 Score=31.53 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.3
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+.||+||||+-
T Consensus 28 ~~Ge~~~i~G~nGsGKST 45 (262)
T PRK09984 28 HHGEMVALLGPSGSGKST 45 (262)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 368899999999999863
No 486
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=67.10 E-value=2.8 Score=31.86 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=16.6
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.-.|.++.+.||+||||+-+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl 50 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLL 50 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 335889999999999986443
No 487
>PRK06749 replicative DNA helicase; Provisional
Probab=67.09 E-value=3.5 Score=34.51 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=20.8
Q ss_pred ccccccceEEecCCCCCCCCCCceee
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+.+-.|-.++++|+||.|||-|.-.+
T Consensus 181 ~Gl~~G~LiiIaarPgmGKTafal~i 206 (428)
T PRK06749 181 CGLQEGDFVVLGARPSMGKTAFALNV 206 (428)
T ss_pred CCCCCCcEEEEEeCCCCCchHHHHHH
Confidence 45667889999999999999876533
No 488
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=66.71 E-value=2.8 Score=31.38 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=16.4
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.-.|..+.+.||+||||+-+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl 47 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVL 47 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHH
Confidence 336889999999999986433
No 489
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.68 E-value=2.9 Score=31.17 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.3
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.|++||||+-
T Consensus 29 ~i~~Ge~~~i~G~nGsGKST 48 (254)
T PRK14273 29 KILKNSITALIGPSGCGKST 48 (254)
T ss_pred EEcCCCEEEEECCCCCCHHH
Confidence 33468899999999999864
No 490
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=66.61 E-value=2.9 Score=30.96 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=16.8
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
-.|..+.+.|++||||+-+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSK 51 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 358899999999999974433
No 491
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=66.45 E-value=2.7 Score=33.89 Aligned_cols=18 Identities=17% Similarity=-0.005 Sum_probs=15.3
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+.+.|+.||||+=.
T Consensus 21 ~~~~~fv~G~~GtGKs~l 38 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFL 38 (364)
T ss_pred CCcEEEEEcCCCCChhHH
Confidence 478899999999999744
No 492
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=66.36 E-value=2.6 Score=33.28 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=12.4
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
.++=++||||||||-
T Consensus 14 ~~i~v~Gp~GSGKTa 28 (202)
T COG0378 14 LRIGVGGPPGSGKTA 28 (202)
T ss_pred EEEEecCCCCcCHHH
Confidence 466789999999984
No 493
>KOG0729|consensus
Probab=66.33 E-value=3.2 Score=35.72 Aligned_cols=20 Identities=10% Similarity=-0.090 Sum_probs=14.7
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+---+-+|+-||||||||-
T Consensus 207 gidppkgvllygppgtgktl 226 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTL 226 (435)
T ss_pred CCCCCCceEEeCCCCCchhH
Confidence 33344557799999999984
No 494
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.22 E-value=3 Score=30.98 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=16.7
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
...|-++.+.|++||||+-.-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl 48 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYL 48 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346889999999999986443
No 495
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.21 E-value=3 Score=31.79 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=17.2
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
..-.|.++.+.||+||||+-+-
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl 67 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLL 67 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3346889999999999986443
No 496
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=66.21 E-value=3.3 Score=30.58 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.2
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
.++.++.||+|+|||-.
T Consensus 22 ~g~~~i~G~NGsGKTTL 38 (204)
T cd03240 22 SPLTLIVGQNGAGKTTI 38 (204)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 44899999999999744
No 497
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=66.08 E-value=3.8 Score=31.63 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=10.5
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
.++.+.||.|||||
T Consensus 20 ~~v~~~G~AGTGKT 33 (205)
T PF02562_consen 20 DLVIVNGPAGTGKT 33 (205)
T ss_dssp SEEEEE--TTSSTT
T ss_pred CeEEEECCCCCcHH
Confidence 46789999999998
No 498
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=66.06 E-value=2.4 Score=35.64 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=12.4
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
.-|++.|++|||||
T Consensus 142 npl~i~G~~G~GKT 155 (450)
T PRK14087 142 NPLFIYGESGMGKT 155 (450)
T ss_pred CceEEECCCCCcHH
Confidence 45889999999998
No 499
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.94 E-value=3 Score=30.88 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=16.7
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.-.|.++.+.||+||||+-+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl 46 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLL 46 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHH
Confidence 346889999999999986443
No 500
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=65.77 E-value=3 Score=31.71 Aligned_cols=20 Identities=20% Similarity=0.049 Sum_probs=16.4
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|..+.+.||+||||+-+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTL 49 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTL 49 (272)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 33688999999999998744
Done!