Query psy2779
Match_columns 101
No_of_seqs 106 out of 291
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 16:40:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c9o_A RUVB-like 1; hexameric 99.6 2.1E-16 7.2E-21 125.1 -0.3 77 1-85 1-77 (456)
2 3uk6_A RUVB-like 2; hexameric 99.5 1.4E-15 4.8E-20 113.2 1.1 78 1-86 8-85 (368)
3 1d2n_A N-ethylmaleimide-sensit 97.7 4.8E-06 1.7E-10 60.2 -0.3 67 13-86 9-79 (272)
4 3h4m_A Proteasome-activating n 96.6 0.00013 4.4E-09 52.4 -2.1 55 31-85 11-65 (285)
5 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.00088 3E-08 47.0 0.6 48 36-86 5-54 (262)
6 1g8p_A Magnesium-chelatase 38 96.2 0.0015 5.2E-08 47.6 1.5 41 33-86 20-60 (350)
7 3eie_A Vacuolar protein sortin 96.2 0.00092 3.1E-08 50.0 0.3 50 34-85 15-65 (322)
8 3hws_A ATP-dependent CLP prote 96.1 0.0012 4.2E-08 49.8 0.5 46 38-86 16-66 (363)
9 3syl_A Protein CBBX; photosynt 96.0 0.00051 1.7E-08 49.6 -1.6 47 38-86 32-82 (309)
10 3bos_A Putative DNA replicatio 95.9 0.001 3.5E-08 45.2 -0.5 55 23-87 14-68 (242)
11 2r62_A Cell division protease 95.9 0.00053 1.8E-08 48.9 -2.0 52 32-85 6-58 (268)
12 3pvs_A Replication-associated 95.9 0.0013 4.5E-08 52.9 -0.0 42 35-86 24-65 (447)
13 3b9p_A CG5977-PA, isoform A; A 95.9 0.0015 5.2E-08 47.2 0.3 49 34-86 18-69 (297)
14 1lv7_A FTSH; alpha/beta domain 95.9 0.0018 6.1E-08 46.1 0.7 51 32-85 7-59 (257)
15 3pfi_A Holliday junction ATP-d 95.8 0.0015 5.2E-08 48.0 -0.1 50 28-86 21-70 (338)
16 3ec2_A DNA replication protein 95.7 0.0024 8.2E-08 43.2 0.7 37 41-87 18-54 (180)
17 1um8_A ATP-dependent CLP prote 95.7 0.0011 3.7E-08 50.2 -1.2 46 37-85 21-86 (376)
18 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.0021 7.1E-08 48.7 0.2 49 35-86 10-60 (322)
19 2r44_A Uncharacterized protein 95.6 0.0012 4E-08 48.8 -1.2 36 35-85 25-60 (331)
20 2v1u_A Cell division control p 95.6 0.0036 1.2E-07 45.5 1.4 45 34-87 16-60 (387)
21 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0019 6.6E-08 53.2 -0.2 36 35-85 20-55 (500)
22 1l8q_A Chromosomal replication 95.5 0.0041 1.4E-07 45.8 1.3 47 29-86 3-52 (324)
23 1ofh_A ATP-dependent HSL prote 95.5 0.002 7E-08 45.9 -0.4 49 36-86 14-65 (310)
24 3cf0_A Transitional endoplasmi 95.4 0.0025 8.5E-08 47.3 -0.1 49 35-86 13-64 (301)
25 2qp9_X Vacuolar protein sortin 95.3 0.0028 9.7E-08 48.6 -0.0 53 33-86 47-99 (355)
26 1hqc_A RUVB; extended AAA-ATPa 95.2 0.0039 1.3E-07 45.1 0.4 45 35-87 10-54 (324)
27 4fcw_A Chaperone protein CLPB; 95.2 0.0029 9.8E-08 45.6 -0.3 44 36-86 16-62 (311)
28 2chg_A Replication factor C sm 95.2 0.004 1.4E-07 41.1 0.4 39 36-87 16-54 (226)
29 2qby_A CDC6 homolog 1, cell di 95.1 0.0067 2.3E-07 43.9 1.4 46 33-87 16-61 (386)
30 1njg_A DNA polymerase III subu 95.1 0.0043 1.5E-07 41.1 0.3 40 36-87 22-61 (250)
31 2zan_A Vacuolar protein sortin 95.0 0.0042 1.4E-07 49.2 0.1 49 34-85 131-181 (444)
32 2qor_A Guanylate kinase; phosp 94.9 0.0061 2.1E-07 42.3 0.6 23 65-87 6-28 (204)
33 3vfd_A Spastin; ATPase, microt 94.9 0.0042 1.4E-07 47.6 -0.3 47 35-85 113-162 (389)
34 3k1j_A LON protease, ATP-depen 94.6 0.005 1.7E-07 50.5 -0.5 38 34-86 38-75 (604)
35 4eun_A Thermoresistant glucoki 94.6 0.0084 2.9E-07 41.5 0.7 19 70-88 28-46 (200)
36 1g41_A Heat shock protein HSLU 94.5 0.0073 2.5E-07 49.6 0.3 49 36-85 14-64 (444)
37 3u61_B DNA polymerase accessor 94.5 0.0088 3E-07 43.8 0.7 40 35-86 24-63 (324)
38 2qby_B CDC6 homolog 3, cell di 94.4 0.0063 2.2E-07 44.8 -0.2 46 33-87 16-61 (384)
39 2bjv_A PSP operon transcriptio 94.4 0.005 1.7E-07 44.0 -0.7 39 35-85 4-43 (265)
40 2chq_A Replication factor C sm 94.4 0.013 4.5E-07 41.7 1.4 39 36-87 16-54 (319)
41 1jbk_A CLPB protein; beta barr 94.4 0.01 3.5E-07 38.2 0.7 39 36-87 21-59 (195)
42 1fnn_A CDC6P, cell division co 94.4 0.0091 3.1E-07 43.7 0.5 44 35-87 15-60 (389)
43 1iqp_A RFCS; clamp loader, ext 94.3 0.0083 2.8E-07 42.9 0.1 39 36-87 24-62 (327)
44 1sxj_D Activator 1 41 kDa subu 94.2 0.0076 2.6E-07 43.8 -0.2 39 36-87 36-74 (353)
45 1in4_A RUVB, holliday junction 94.1 0.0068 2.3E-07 45.7 -0.6 43 36-86 24-66 (334)
46 1sxj_E Activator 1 40 kDa subu 94.1 0.013 4.5E-07 43.0 0.9 39 36-86 13-51 (354)
47 2ce7_A Cell division protein F 94.1 0.011 3.6E-07 48.6 0.4 52 31-85 10-63 (476)
48 2z4s_A Chromosomal replication 94.1 0.009 3.1E-07 47.4 -0.1 47 28-86 96-145 (440)
49 3co5_A Putative two-component 94.0 0.0044 1.5E-07 41.3 -1.7 15 71-85 27-41 (143)
50 4b4t_M 26S protease regulatory 94.0 0.0064 2.2E-07 49.7 -1.1 60 21-85 167-229 (434)
51 1ixz_A ATP-dependent metallopr 93.9 0.0093 3.2E-07 42.3 -0.2 52 31-86 10-64 (254)
52 2w58_A DNAI, primosome compone 93.9 0.0097 3.3E-07 40.6 -0.1 16 72-87 55-70 (202)
53 3d8b_A Fidgetin-like protein 1 93.9 0.012 4.1E-07 44.9 0.3 49 34-86 81-132 (357)
54 4b4t_L 26S protease subunit RP 93.8 0.0067 2.3E-07 49.6 -1.2 48 35-85 179-229 (437)
55 3m6a_A ATP-dependent protease 93.8 0.01 3.4E-07 48.5 -0.3 41 38-85 82-122 (543)
56 3t15_A Ribulose bisphosphate c 93.8 0.012 4.2E-07 43.8 0.2 16 71-86 36-51 (293)
57 1sxj_C Activator 1 40 kDa subu 93.7 0.011 3.9E-07 44.0 -0.0 35 37-86 25-61 (340)
58 2zts_A Putative uncharacterize 93.7 0.018 6E-07 39.6 0.8 22 67-88 26-47 (251)
59 1jr3_A DNA polymerase III subu 93.6 0.015 5E-07 42.6 0.4 40 36-87 15-54 (373)
60 2p65_A Hypothetical protein PF 93.4 0.014 4.6E-07 37.9 -0.1 38 36-86 21-58 (187)
61 3f9v_A Minichromosome maintena 93.3 0.024 8.3E-07 47.1 1.3 50 34-85 292-341 (595)
62 4b4t_K 26S protease regulatory 93.1 0.01 3.5E-07 48.3 -1.3 48 35-85 170-220 (428)
63 1iy2_A ATP-dependent metallopr 93.1 0.011 3.6E-07 42.9 -1.1 51 32-86 35-88 (278)
64 3pxg_A Negative regulator of g 93.0 0.027 9.3E-07 44.8 1.1 38 36-86 179-216 (468)
65 2x8a_A Nuclear valosin-contain 93.0 0.0089 3.1E-07 44.4 -1.6 48 36-85 9-58 (274)
66 4b4t_J 26S protease regulatory 93.0 0.0094 3.2E-07 48.7 -1.6 47 36-85 147-196 (405)
67 3tr0_A Guanylate kinase, GMP k 93.0 0.025 8.7E-07 38.2 0.8 23 68-90 4-26 (205)
68 3n70_A Transport activator; si 92.9 0.021 7.1E-07 37.9 0.2 15 71-85 24-38 (145)
69 2plr_A DTMP kinase, probable t 92.8 0.024 8.3E-07 38.1 0.5 18 70-87 3-20 (213)
70 3cm0_A Adenylate kinase; ATP-b 92.7 0.024 8.2E-07 37.9 0.3 20 70-89 3-22 (186)
71 1sxj_B Activator 1 37 kDa subu 92.7 0.022 7.4E-07 40.6 0.1 39 36-87 20-58 (323)
72 2dr3_A UPF0273 protein PH0284; 92.4 0.03 1E-06 38.5 0.5 22 66-87 18-39 (247)
73 1kgd_A CASK, peripheral plasma 92.4 0.033 1.1E-06 38.0 0.7 21 69-89 3-23 (180)
74 3pxi_A Negative regulator of g 92.3 0.025 8.4E-07 47.3 -0.1 44 36-86 490-536 (758)
75 2cvh_A DNA repair and recombin 92.3 0.039 1.3E-06 37.4 0.9 22 67-88 16-37 (220)
76 2w0m_A SSO2452; RECA, SSPF, un 92.2 0.037 1.3E-06 37.4 0.8 23 67-89 19-41 (235)
77 4b4t_I 26S protease regulatory 92.1 0.018 6.1E-07 47.8 -1.1 50 33-85 178-230 (437)
78 3vaa_A Shikimate kinase, SK; s 92.1 0.038 1.3E-06 38.1 0.7 18 70-87 24-41 (199)
79 1kag_A SKI, shikimate kinase I 92.1 0.036 1.2E-06 36.6 0.5 17 71-87 4-20 (173)
80 4b4t_H 26S protease regulatory 92.0 0.019 6.4E-07 48.0 -1.0 48 35-85 207-257 (467)
81 1zp6_A Hypothetical protein AT 91.9 0.032 1.1E-06 37.4 0.2 17 70-86 8-24 (191)
82 2kjq_A DNAA-related protein; s 91.9 0.078 2.7E-06 36.1 2.1 18 70-87 35-52 (149)
83 2rhm_A Putative kinase; P-loop 91.9 0.033 1.1E-06 37.1 0.2 18 70-87 4-21 (193)
84 2v54_A DTMP kinase, thymidylat 91.8 0.042 1.4E-06 37.0 0.7 18 70-87 3-20 (204)
85 2dhr_A FTSH; AAA+ protein, hex 91.8 0.04 1.4E-06 45.4 0.7 51 32-85 26-78 (499)
86 1r6b_X CLPA protein; AAA+, N-t 91.8 0.031 1E-06 46.3 -0.0 45 36-86 457-503 (758)
87 3cf2_A TER ATPase, transitiona 91.7 0.052 1.8E-06 47.6 1.3 47 36-85 476-525 (806)
88 1knq_A Gluconate kinase; ALFA/ 91.6 0.047 1.6E-06 36.3 0.7 18 70-87 7-24 (175)
89 1n0w_A DNA repair protein RAD5 91.6 0.051 1.7E-06 37.4 0.9 24 67-90 20-43 (243)
90 4b3f_X DNA-binding protein smu 91.5 0.044 1.5E-06 45.1 0.6 16 70-85 204-219 (646)
91 2wwf_A Thymidilate kinase, put 91.5 0.047 1.6E-06 37.0 0.6 20 68-87 7-26 (212)
92 3iij_A Coilin-interacting nucl 91.5 0.048 1.6E-06 36.6 0.6 20 68-87 8-27 (180)
93 2vli_A Antibiotic resistance p 91.3 0.082 2.8E-06 35.0 1.6 19 70-88 4-22 (183)
94 2c95_A Adenylate kinase 1; tra 91.0 0.047 1.6E-06 36.5 0.3 18 70-87 8-25 (196)
95 3lnc_A Guanylate kinase, GMP k 91.0 0.093 3.2E-06 36.8 1.8 24 69-92 25-48 (231)
96 1ypw_A Transitional endoplasmi 91.0 0.04 1.4E-06 47.3 -0.1 51 35-85 202-252 (806)
97 1nn5_A Similar to deoxythymidy 90.9 0.049 1.7E-06 36.9 0.3 19 69-87 7-25 (215)
98 3te6_A Regulatory protein SIR3 90.9 0.034 1.1E-06 43.5 -0.7 17 70-86 44-60 (318)
99 2j41_A Guanylate kinase; GMP, 90.8 0.061 2.1E-06 36.2 0.7 18 70-87 5-22 (207)
100 3trf_A Shikimate kinase, SK; a 90.8 0.059 2E-06 36.0 0.6 18 71-88 5-22 (185)
101 3hu3_A Transitional endoplasmi 90.7 0.047 1.6E-06 44.5 0.1 47 36-85 203-252 (489)
102 4gp7_A Metallophosphoesterase; 90.5 0.071 2.4E-06 36.3 0.8 20 70-89 8-27 (171)
103 2ehv_A Hypothetical protein PH 90.4 0.074 2.5E-06 36.6 0.8 24 67-90 26-49 (251)
104 1ojl_A Transcriptional regulat 90.4 0.039 1.3E-06 41.4 -0.6 15 71-85 25-39 (304)
105 1gvn_B Zeta; postsegregational 90.4 0.084 2.9E-06 39.5 1.2 17 70-86 32-48 (287)
106 3pxi_A Negative regulator of g 90.4 0.089 3.1E-06 43.9 1.4 38 36-86 179-216 (758)
107 1y63_A LMAJ004144AAA protein; 90.3 0.073 2.5E-06 36.3 0.8 18 70-87 9-26 (184)
108 3bh0_A DNAB-like replicative h 90.2 0.08 2.8E-06 39.9 1.0 24 66-89 63-86 (315)
109 3tau_A Guanylate kinase, GMP k 90.2 0.076 2.6E-06 37.1 0.7 20 70-89 7-26 (208)
110 1ypw_A Transitional endoplasmi 90.1 0.045 1.5E-06 47.0 -0.6 49 35-86 475-526 (806)
111 4a74_A DNA repair and recombin 89.9 0.068 2.3E-06 36.3 0.3 24 67-90 21-44 (231)
112 2vhj_A Ntpase P4, P4; non- hyd 89.6 0.076 2.6E-06 42.6 0.4 23 66-88 118-140 (331)
113 1qvr_A CLPB protein; coiled co 89.4 0.072 2.4E-06 45.4 0.1 43 37-86 558-603 (854)
114 3llm_A ATP-dependent RNA helic 89.2 0.089 3E-06 37.2 0.5 17 69-85 74-90 (235)
115 1sxj_A Activator 1 95 kDa subu 89.1 0.089 3E-06 42.2 0.5 51 36-86 38-92 (516)
116 1cr0_A DNA primase/helicase; R 89.1 0.088 3E-06 38.3 0.4 24 67-90 31-54 (296)
117 1lvg_A Guanylate kinase, GMP k 89.0 0.087 3E-06 36.8 0.3 22 70-91 3-24 (198)
118 2z83_A Helicase/nucleoside tri 88.9 0.21 7.2E-06 39.3 2.5 20 67-86 17-36 (459)
119 3umf_A Adenylate kinase; rossm 88.9 0.14 4.9E-06 37.6 1.4 19 69-87 27-45 (217)
120 2bwj_A Adenylate kinase 5; pho 88.9 0.07 2.4E-06 35.7 -0.3 18 70-87 11-28 (199)
121 1tue_A Replication protein E1; 88.8 0.073 2.5E-06 40.5 -0.2 17 71-87 58-74 (212)
122 1r6b_X CLPA protein; AAA+, N-t 88.5 0.1 3.5E-06 43.2 0.4 37 37-86 186-222 (758)
123 1w5s_A Origin recognition comp 88.4 0.088 3E-06 38.9 0.0 46 34-86 19-67 (412)
124 2qgz_A Helicase loader, putati 88.4 0.11 3.8E-06 39.2 0.6 16 71-86 152-167 (308)
125 1s96_A Guanylate kinase, GMP k 88.3 0.12 4.2E-06 37.4 0.7 21 65-85 10-30 (219)
126 1qf9_A UMP/CMP kinase, protein 88.2 0.094 3.2E-06 34.6 0.0 18 71-88 6-23 (194)
127 3uie_A Adenylyl-sulfate kinase 88.2 0.11 3.9E-06 35.7 0.5 17 70-86 24-40 (200)
128 4eaq_A DTMP kinase, thymidylat 88.0 0.13 4.5E-06 37.1 0.7 20 70-89 25-44 (229)
129 1nlf_A Regulatory protein REPA 88.0 0.11 3.7E-06 37.7 0.2 25 67-91 26-50 (279)
130 2i1q_A DNA repair and recombin 87.9 0.11 3.8E-06 38.5 0.2 24 66-89 93-116 (322)
131 3ney_A 55 kDa erythrocyte memb 87.7 0.14 4.8E-06 37.4 0.7 21 67-87 15-35 (197)
132 2p5t_B PEZT; postsegregational 87.6 0.12 4.1E-06 37.3 0.3 18 70-87 31-48 (253)
133 2cdn_A Adenylate kinase; phosp 87.6 0.14 4.9E-06 34.9 0.7 17 71-87 20-36 (201)
134 2z43_A DNA repair and recombin 87.4 0.13 4.5E-06 38.7 0.4 24 66-89 102-125 (324)
135 1aky_A Adenylate kinase; ATP:A 87.3 0.16 5.3E-06 35.3 0.7 17 71-87 4-20 (220)
136 3a4m_A L-seryl-tRNA(SEC) kinas 87.1 0.15 5.1E-06 37.0 0.5 17 71-87 4-20 (260)
137 3t61_A Gluconokinase; PSI-biol 87.0 0.14 4.7E-06 35.0 0.3 17 71-87 18-34 (202)
138 1v5w_A DMC1, meiotic recombina 86.9 0.18 6.1E-06 38.5 0.9 23 67-89 118-140 (343)
139 3c8u_A Fructokinase; YP_612366 86.7 0.22 7.6E-06 34.5 1.3 20 70-89 21-40 (208)
140 2yvu_A Probable adenylyl-sulfa 86.6 0.16 5.6E-06 34.2 0.5 19 70-88 12-30 (186)
141 1via_A Shikimate kinase; struc 86.5 0.16 5.3E-06 33.9 0.4 15 73-87 6-20 (175)
142 2q6t_A DNAB replication FORK h 86.5 0.17 5.7E-06 39.8 0.6 24 66-89 195-218 (444)
143 2pez_A Bifunctional 3'-phospho 86.3 0.18 6E-06 33.8 0.5 19 70-88 4-22 (179)
144 2qen_A Walker-type ATPase; unk 86.2 0.18 6.3E-06 36.0 0.6 38 35-87 10-47 (350)
145 2eyu_A Twitching motility prot 86.2 0.18 6E-06 37.5 0.5 19 69-87 23-41 (261)
146 1u0j_A DNA replication protein 86.0 0.18 6.3E-06 38.9 0.6 18 71-88 104-121 (267)
147 2r6a_A DNAB helicase, replicat 86.0 0.22 7.5E-06 39.3 1.0 24 66-89 198-221 (454)
148 2zr9_A Protein RECA, recombina 85.6 0.19 6.3E-06 39.1 0.4 22 67-88 57-78 (349)
149 1ukz_A Uridylate kinase; trans 85.6 0.19 6.6E-06 34.0 0.4 18 71-88 15-32 (203)
150 2qt1_A Nicotinamide riboside k 85.3 0.17 5.9E-06 34.6 0.1 19 71-89 21-39 (207)
151 3jvv_A Twitching mobility prot 85.3 0.2 7E-06 39.2 0.5 18 70-87 122-139 (356)
152 1zuh_A Shikimate kinase; alpha 85.2 0.21 7.1E-06 33.0 0.4 17 72-88 8-24 (168)
153 2r2a_A Uncharacterized protein 85.1 0.2 7E-06 36.1 0.4 16 73-88 7-22 (199)
154 1zd8_A GTP:AMP phosphotransfer 85.1 0.19 6.5E-06 35.1 0.2 17 71-87 7-23 (227)
155 1cke_A CK, MSSA, protein (cyti 85.1 0.24 8.1E-06 34.0 0.7 19 71-89 5-23 (227)
156 1w36_D RECD, exodeoxyribonucle 85.0 0.23 7.7E-06 41.1 0.7 17 70-86 163-179 (608)
157 1u94_A RECA protein, recombina 84.9 0.25 8.4E-06 38.7 0.8 22 67-88 59-80 (356)
158 2gxq_A Heat resistant RNA depe 84.8 0.21 7.3E-06 33.5 0.4 17 70-86 37-53 (207)
159 3cf2_A TER ATPase, transitiona 84.7 0.23 7.7E-06 43.7 0.6 15 71-85 238-252 (806)
160 4a1f_A DNAB helicase, replicat 84.6 0.15 5.1E-06 40.1 -0.5 23 67-89 42-64 (338)
161 1z6g_A Guanylate kinase; struc 84.6 0.22 7.6E-06 35.3 0.4 22 68-89 20-41 (218)
162 3v9p_A DTMP kinase, thymidylat 84.6 0.3 1E-05 36.1 1.1 22 67-88 21-42 (227)
163 1znw_A Guanylate kinase, GMP k 84.6 0.25 8.5E-06 34.2 0.6 19 69-87 18-36 (207)
164 2gk6_A Regulator of nonsense t 84.6 0.24 8.3E-06 40.8 0.7 17 70-86 194-210 (624)
165 1vec_A ATP-dependent RNA helic 84.6 0.3 1E-05 32.9 1.0 16 70-85 39-54 (206)
166 3hr8_A Protein RECA; alpha and 84.4 0.21 7.2E-06 39.5 0.2 22 66-87 56-77 (356)
167 1zak_A Adenylate kinase; ATP:A 84.0 0.21 7.1E-06 34.7 0.1 17 71-87 5-21 (222)
168 3tlx_A Adenylate kinase 2; str 83.9 0.26 9E-06 35.5 0.6 21 70-90 28-48 (243)
169 1vht_A Dephospho-COA kinase; s 83.8 0.27 9.3E-06 33.9 0.6 17 71-87 4-20 (218)
170 1m7g_A Adenylylsulfate kinase; 83.7 0.26 8.7E-06 34.2 0.4 19 70-88 24-42 (211)
171 3bgw_A DNAB-like replicative h 83.6 0.27 9.3E-06 39.3 0.6 24 67-90 193-216 (444)
172 3be4_A Adenylate kinase; malar 83.5 0.26 8.7E-06 34.4 0.3 17 71-87 5-21 (217)
173 2qmh_A HPR kinase/phosphorylas 83.4 0.38 1.3E-05 36.4 1.3 16 70-85 33-48 (205)
174 2b8t_A Thymidine kinase; deoxy 83.4 0.28 9.6E-06 36.3 0.5 16 70-85 11-26 (223)
175 2ewv_A Twitching motility prot 83.4 0.27 9.1E-06 38.3 0.4 19 69-87 134-152 (372)
176 2bbw_A Adenylate kinase 4, AK4 83.2 0.3 1E-05 34.6 0.6 20 71-90 27-46 (246)
177 3e1s_A Exodeoxyribonuclease V, 83.2 0.31 1.1E-05 40.4 0.7 17 70-86 203-219 (574)
178 1p9r_A General secretion pathw 83.0 0.29 1E-05 39.3 0.5 17 70-86 166-182 (418)
179 1pzn_A RAD51, DNA repair and r 82.9 0.28 9.5E-06 37.8 0.3 23 66-88 126-148 (349)
180 3kta_A Chromosome segregation 82.8 0.29 9.8E-06 32.6 0.3 15 71-85 26-40 (182)
181 3cmw_A Protein RECA, recombina 82.5 0.34 1.2E-05 46.0 0.8 20 68-87 1079-1098(1706)
182 2fna_A Conserved hypothetical 82.3 0.27 9.3E-06 35.0 0.1 37 33-86 9-45 (357)
183 1xp8_A RECA protein, recombina 82.0 0.32 1.1E-05 38.3 0.4 22 67-88 70-91 (366)
184 1yks_A Genome polyprotein [con 82.0 0.72 2.4E-05 36.2 2.4 20 68-87 5-24 (440)
185 1qde_A EIF4A, translation init 82.0 0.32 1.1E-05 33.2 0.3 16 70-85 50-65 (224)
186 2pl3_A Probable ATP-dependent 81.8 0.33 1.1E-05 33.6 0.4 16 70-85 61-76 (236)
187 1ak2_A Adenylate kinase isoenz 81.7 0.39 1.3E-05 33.9 0.7 17 71-87 16-32 (233)
188 3asz_A Uridine kinase; cytidin 81.4 0.31 1E-05 33.2 0.1 20 70-89 5-24 (211)
189 3lda_A DNA repair protein RAD5 81.3 0.35 1.2E-05 38.6 0.4 24 66-89 173-196 (400)
190 1rz3_A Hypothetical protein rb 81.3 0.29 9.8E-06 33.9 -0.1 22 69-90 20-41 (201)
191 3upu_A ATP-dependent DNA helic 81.1 0.42 1.4E-05 37.6 0.7 15 72-86 46-60 (459)
192 3iuy_A Probable ATP-dependent 81.0 0.37 1.3E-05 33.2 0.4 16 70-85 56-71 (228)
193 1a5t_A Delta prime, HOLB; zinc 80.9 0.38 1.3E-05 36.1 0.5 16 71-86 24-39 (334)
194 2jlq_A Serine protease subunit 80.9 0.79 2.7E-05 35.9 2.3 17 70-86 18-34 (451)
195 1svm_A Large T antigen; AAA+ f 80.6 0.42 1.4E-05 37.9 0.6 23 68-90 166-188 (377)
196 1uf9_A TT1252 protein; P-loop, 80.6 0.34 1.2E-05 32.3 0.1 19 72-90 9-27 (203)
197 1q57_A DNA primase/helicase; d 80.3 0.24 8.1E-06 39.3 -0.9 24 67-90 238-261 (503)
198 2oap_1 GSPE-2, type II secreti 79.5 0.38 1.3E-05 39.5 0.0 18 70-87 259-276 (511)
199 2z0m_A 337AA long hypothetical 79.3 0.44 1.5E-05 33.7 0.3 16 70-85 30-45 (337)
200 3eiq_A Eukaryotic initiation f 79.2 0.6 2.1E-05 34.2 1.0 17 69-85 75-91 (414)
201 2gza_A Type IV secretion syste 78.9 0.4 1.4E-05 37.0 0.0 22 68-89 172-193 (361)
202 3dkp_A Probable ATP-dependent 78.9 0.47 1.6E-05 33.0 0.4 16 70-85 65-80 (245)
203 1tf7_A KAIC; homohexamer, hexa 78.8 0.48 1.6E-05 38.0 0.4 24 67-90 35-58 (525)
204 2wjy_A Regulator of nonsense t 78.8 0.52 1.8E-05 40.8 0.7 17 70-86 370-386 (800)
205 2xzl_A ATP-dependent helicase 77.6 0.57 2E-05 40.5 0.6 17 70-86 374-390 (802)
206 3b85_A Phosphate starvation-in 77.5 1.1 3.8E-05 32.1 2.0 18 70-87 21-38 (208)
207 1tf7_A KAIC; homohexamer, hexa 77.5 0.58 2E-05 37.5 0.6 24 66-89 276-299 (525)
208 3io5_A Recombination and repai 77.4 0.51 1.7E-05 38.1 0.2 21 66-87 24-44 (333)
209 1q3t_A Cytidylate kinase; nucl 77.4 0.62 2.1E-05 32.8 0.6 20 70-89 15-34 (236)
210 3b6e_A Interferon-induced heli 77.4 0.21 7.1E-06 33.4 -1.8 17 70-86 47-63 (216)
211 3a8t_A Adenylate isopentenyltr 77.4 0.55 1.9E-05 37.4 0.4 15 71-85 40-54 (339)
212 3zvl_A Bifunctional polynucleo 77.3 0.63 2.2E-05 36.5 0.7 18 70-87 257-274 (416)
213 3nwj_A ATSK2; P loop, shikimat 77.3 0.58 2E-05 34.8 0.5 20 71-90 48-67 (250)
214 1t6n_A Probable ATP-dependent 77.2 0.57 1.9E-05 32.0 0.4 15 71-85 51-65 (220)
215 2gno_A DNA polymerase III, gam 77.1 0.3 1E-05 37.1 -1.2 15 71-85 18-32 (305)
216 2pt7_A CAG-ALFA; ATPase, prote 76.9 0.47 1.6E-05 36.4 -0.1 23 68-90 168-190 (330)
217 1hv8_A Putative ATP-dependent 76.8 0.66 2.3E-05 33.1 0.6 14 72-85 45-58 (367)
218 3ber_A Probable ATP-dependent 76.5 0.61 2.1E-05 33.4 0.4 17 69-85 78-94 (249)
219 1uj2_A Uridine-cytidine kinase 76.4 0.61 2.1E-05 33.3 0.4 18 72-89 23-40 (252)
220 2cbz_A Multidrug resistance-as 75.9 0.78 2.7E-05 33.4 0.8 20 67-86 27-46 (237)
221 3tif_A Uncharacterized ABC tra 75.9 0.78 2.7E-05 33.3 0.8 19 67-85 27-45 (235)
222 4edh_A DTMP kinase, thymidylat 75.8 0.67 2.3E-05 33.4 0.5 21 69-89 4-24 (213)
223 3fht_A ATP-dependent RNA helic 75.7 0.7 2.4E-05 33.7 0.5 15 71-85 64-78 (412)
224 2i4i_A ATP-dependent RNA helic 75.7 0.66 2.2E-05 34.1 0.4 16 70-85 51-66 (417)
225 3ly5_A ATP-dependent RNA helic 75.4 0.51 1.8E-05 34.0 -0.3 17 69-85 89-105 (262)
226 1f2t_A RAD50 ABC-ATPase; DNA d 75.3 0.74 2.5E-05 31.1 0.5 18 69-86 21-38 (149)
227 3fe2_A Probable ATP-dependent 75.2 0.53 1.8E-05 33.0 -0.2 16 70-85 65-80 (242)
228 1wrb_A DJVLGB; RNA helicase, D 75.0 0.68 2.3E-05 32.5 0.3 15 71-85 60-74 (253)
229 3crm_A TRNA delta(2)-isopenten 74.9 0.71 2.4E-05 36.3 0.4 16 72-87 6-21 (323)
230 1e69_A Chromosome segregation 74.7 1.5 5.3E-05 32.7 2.2 17 71-87 24-40 (322)
231 1s2m_A Putative ATP-dependent 74.6 0.66 2.3E-05 34.0 0.1 16 70-85 57-72 (400)
232 3pey_A ATP-dependent RNA helic 74.5 0.77 2.6E-05 33.1 0.5 14 72-85 45-58 (395)
233 3bor_A Human initiation factor 74.4 0.39 1.3E-05 33.7 -1.1 16 70-85 66-81 (237)
234 1vma_A Cell division protein F 74.3 0.79 2.7E-05 35.1 0.5 17 70-86 103-119 (306)
235 3rc3_A ATP-dependent RNA helic 74.3 0.73 2.5E-05 39.3 0.4 20 67-86 151-170 (677)
236 2oxc_A Probable ATP-dependent 74.3 0.74 2.5E-05 32.0 0.3 16 70-85 60-75 (230)
237 1htw_A HI0065; nucleotide-bind 74.2 0.79 2.7E-05 31.7 0.5 23 69-91 31-53 (158)
238 4e22_A Cytidylate kinase; P-lo 74.1 0.85 2.9E-05 32.9 0.6 19 70-88 26-44 (252)
239 3auy_A DNA double-strand break 74.0 0.7 2.4E-05 35.3 0.2 17 69-85 23-39 (371)
240 4akg_A Glutathione S-transfera 73.8 0.81 2.8E-05 45.1 0.6 17 69-85 1265-1281(2695)
241 3lfu_A DNA helicase II; SF1 he 73.7 0.7 2.4E-05 36.8 0.1 15 71-85 22-36 (647)
242 2pze_A Cystic fibrosis transme 73.6 0.91 3.1E-05 32.8 0.7 19 67-85 30-48 (229)
243 2va8_A SSO2462, SKI2-type heli 73.3 0.87 3E-05 37.2 0.6 16 70-85 45-60 (715)
244 1rj9_A FTSY, signal recognitio 73.3 0.91 3.1E-05 34.6 0.6 17 70-86 101-117 (304)
245 2pcj_A ABC transporter, lipopr 73.2 0.82 2.8E-05 32.9 0.3 18 68-85 27-44 (224)
246 3fmp_B ATP-dependent RNA helic 72.7 0.95 3.3E-05 34.7 0.6 15 71-85 131-145 (479)
247 1xti_A Probable ATP-dependent 72.7 0.86 2.9E-05 33.1 0.4 16 70-85 44-59 (391)
248 3oiy_A Reverse gyrase helicase 72.7 0.78 2.7E-05 34.3 0.1 17 70-86 35-51 (414)
249 2j0s_A ATP-dependent RNA helic 72.6 0.85 2.9E-05 33.7 0.3 16 70-85 73-88 (410)
250 2px0_A Flagellar biosynthesis 72.4 0.85 2.9E-05 34.5 0.3 19 70-88 104-122 (296)
251 2jeo_A Uridine-cytidine kinase 72.3 0.93 3.2E-05 32.2 0.5 22 70-91 24-45 (245)
252 1b0u_A Histidine permease; ABC 72.0 1 3.5E-05 33.3 0.7 18 68-85 29-46 (262)
253 3aez_A Pantothenate kinase; tr 72.0 0.98 3.4E-05 34.5 0.6 21 70-90 89-109 (312)
254 1ji0_A ABC transporter; ATP bi 72.0 1 3.5E-05 32.7 0.6 18 68-85 29-46 (240)
255 4g1u_C Hemin import ATP-bindin 71.8 1.2 4E-05 33.2 0.9 19 67-85 33-51 (266)
256 1pui_A ENGB, probable GTP-bind 71.5 0.87 3E-05 30.4 0.1 17 70-86 25-41 (210)
257 3b9q_A Chloroplast SRP recepto 71.5 1 3.5E-05 34.2 0.6 18 70-87 99-116 (302)
258 2fz4_A DNA repair protein RAD2 71.5 0.89 3.1E-05 32.6 0.2 16 71-86 108-123 (237)
259 3lv8_A DTMP kinase, thymidylat 71.4 0.94 3.2E-05 33.6 0.3 21 70-90 26-46 (236)
260 3gfo_A Cobalt import ATP-bindi 71.3 1.2 4.1E-05 33.6 0.9 19 68-86 31-49 (275)
261 1qvr_A CLPB protein; coiled co 71.3 0.75 2.6E-05 39.2 -0.3 15 71-85 191-205 (854)
262 2f6r_A COA synthase, bifunctio 71.1 0.88 3E-05 33.6 0.1 18 71-88 75-92 (281)
263 1q0u_A Bstdead; DEAD protein, 71.1 0.46 1.6E-05 32.6 -1.3 16 70-85 40-55 (219)
264 1mv5_A LMRA, multidrug resista 71.1 1 3.5E-05 32.6 0.5 18 68-85 25-42 (243)
265 2whx_A Serine protease/ntpase/ 71.1 2 6.8E-05 35.8 2.2 19 68-86 183-201 (618)
266 2ff7_A Alpha-hemolysin translo 71.0 1.1 3.8E-05 32.8 0.6 18 68-85 32-49 (247)
267 2ghi_A Transport protein; mult 70.9 1.1 3.8E-05 33.1 0.6 19 68-86 43-61 (260)
268 2zu0_C Probable ATP-dependent 70.8 1.1 3.9E-05 33.1 0.7 21 67-87 42-62 (267)
269 2d2e_A SUFC protein; ABC-ATPas 70.7 1.1 3.9E-05 32.7 0.6 20 68-87 26-45 (250)
270 2ihy_A ABC transporter, ATP-bi 70.6 1.3 4.3E-05 33.3 0.9 19 67-85 43-61 (279)
271 2v9p_A Replication protein E1; 70.5 1 3.4E-05 34.9 0.3 25 67-91 122-146 (305)
272 1a7j_A Phosphoribulokinase; tr 70.5 1.9 6.6E-05 32.2 1.9 21 71-91 5-25 (290)
273 1g6h_A High-affinity branched- 70.3 1.2 4.2E-05 32.6 0.7 18 68-85 30-47 (257)
274 1sgw_A Putative ABC transporte 70.2 1.1 3.8E-05 32.5 0.5 17 69-85 33-49 (214)
275 3foz_A TRNA delta(2)-isopenten 70.1 1.1 3.8E-05 35.6 0.5 16 71-86 10-25 (316)
276 3tmk_A Thymidylate kinase; pho 70.0 1 3.6E-05 32.9 0.3 19 70-88 4-22 (216)
277 3qf7_A RAD50; ABC-ATPase, ATPa 70.0 1.1 3.9E-05 34.5 0.5 15 71-85 23-37 (365)
278 2vp4_A Deoxynucleoside kinase; 69.7 1.4 4.6E-05 31.1 0.8 23 69-91 18-40 (230)
279 1sq5_A Pantothenate kinase; P- 69.5 1 3.4E-05 33.7 0.1 22 70-91 79-100 (308)
280 2r8r_A Sensor protein; KDPD, P 69.5 1.3 4.3E-05 33.7 0.7 16 71-86 5-21 (228)
281 2qi9_C Vitamin B12 import ATP- 69.5 1.3 4.3E-05 32.8 0.7 20 67-86 22-41 (249)
282 2olj_A Amino acid ABC transpor 69.5 1.3 4.3E-05 33.1 0.7 18 68-85 47-64 (263)
283 3d3q_A TRNA delta(2)-isopenten 69.0 1.1 3.8E-05 35.5 0.3 16 72-87 8-23 (340)
284 2yz2_A Putative ABC transporte 68.8 1.3 4.5E-05 32.7 0.6 20 67-86 29-48 (266)
285 2ixe_A Antigen peptide transpo 68.6 1.3 4.5E-05 32.9 0.6 20 67-86 41-60 (271)
286 2nq2_C Hypothetical ABC transp 68.5 1.3 4.6E-05 32.6 0.6 19 68-86 28-46 (253)
287 1vpl_A ABC transporter, ATP-bi 68.2 1.4 4.8E-05 32.7 0.7 19 68-86 38-56 (256)
288 3qks_A DNA double-strand break 68.2 1.3 4.6E-05 31.1 0.5 17 69-85 21-37 (203)
289 3cmu_A Protein RECA, recombina 68.2 1.4 4.9E-05 42.7 0.9 33 56-88 1401-1444(2050)
290 3e70_C DPA, signal recognition 68.1 1.3 4.5E-05 34.2 0.5 17 70-86 128-144 (328)
291 3kl4_A SRP54, signal recogniti 67.9 1.4 4.7E-05 35.9 0.6 19 70-88 96-114 (433)
292 1p5z_B DCK, deoxycytidine kina 67.7 1.3 4.6E-05 31.6 0.5 19 70-88 23-41 (263)
293 2grj_A Dephospho-COA kinase; T 67.4 1.3 4.5E-05 31.4 0.4 18 72-89 13-30 (192)
294 3tbk_A RIG-I helicase domain; 67.4 1.3 4.5E-05 33.5 0.4 16 70-85 18-33 (555)
295 3r20_A Cytidylate kinase; stru 67.3 1.4 4.6E-05 32.9 0.4 19 71-89 9-27 (233)
296 2db3_A ATP-dependent RNA helic 67.1 1.3 4.5E-05 34.1 0.3 17 69-85 91-107 (434)
297 3qkt_A DNA double-strand break 67.0 1.4 4.9E-05 33.2 0.5 18 69-86 21-38 (339)
298 2qm8_A GTPase/ATPase; G protei 66.8 1.5 5.1E-05 33.6 0.6 22 70-91 54-75 (337)
299 1fuu_A Yeast initiation factor 66.8 0.67 2.3E-05 33.6 -1.3 16 70-85 57-72 (394)
300 1z2a_A RAS-related protein RAB 66.7 1.3 4.4E-05 27.8 0.2 13 74-86 8-20 (168)
301 3fmo_B ATP-dependent RNA helic 66.6 1.4 4.9E-05 32.6 0.4 15 71-85 131-145 (300)
302 2xau_A PRE-mRNA-splicing facto 66.5 1.4 4.9E-05 37.7 0.5 17 70-86 108-124 (773)
303 2fu5_C RAS-related protein RAB 66.5 2.3 8E-05 27.4 1.4 19 73-91 10-28 (183)
304 1wms_A RAB-9, RAB9, RAS-relate 66.1 1.4 4.7E-05 28.2 0.2 14 73-86 9-22 (177)
305 2nzj_A GTP-binding protein REM 66.1 1.4 4.7E-05 28.0 0.2 13 74-86 7-19 (175)
306 3fvq_A Fe(3+) IONS import ATP- 66.0 1.5 5.1E-05 34.8 0.5 18 68-85 27-44 (359)
307 1ky3_A GTP-binding protein YPT 65.9 1.4 4.8E-05 28.1 0.2 14 73-86 10-23 (182)
308 3fho_A ATP-dependent RNA helic 65.8 2 6.8E-05 33.9 1.2 15 71-85 158-172 (508)
309 1odf_A YGR205W, hypothetical 3 65.8 1.6 5.3E-05 33.0 0.5 21 70-90 30-50 (290)
310 1z0j_A RAB-22, RAS-related pro 65.8 1.4 4.9E-05 27.7 0.2 13 74-86 9-21 (170)
311 1u8z_A RAS-related protein RAL 65.7 1.4 4.8E-05 27.5 0.2 14 73-86 6-19 (168)
312 1j8m_F SRP54, signal recogniti 65.6 2.7 9.2E-05 31.8 1.8 18 71-88 98-115 (297)
313 1nrj_B SR-beta, signal recogni 65.5 1.4 4.8E-05 29.6 0.2 16 72-87 13-28 (218)
314 3cmw_A Protein RECA, recombina 65.4 1.7 5.8E-05 41.3 0.8 22 67-88 379-400 (1706)
315 2zj8_A DNA helicase, putative 65.2 1.4 4.6E-05 36.3 0.1 16 70-85 38-53 (720)
316 4a2p_A RIG-I, retinoic acid in 65.1 1.5 5.3E-05 33.3 0.4 16 70-85 21-36 (556)
317 1rif_A DAR protein, DNA helica 65.0 1.3 4.6E-05 31.7 0.0 17 71-87 128-144 (282)
318 3tw8_B RAS-related protein RAB 64.9 1.5 5.3E-05 27.8 0.3 14 73-86 11-24 (181)
319 3rlf_A Maltose/maltodextrin im 64.8 1.9 6.5E-05 34.5 0.9 18 68-85 26-43 (381)
320 1np6_A Molybdopterin-guanine d 64.6 1.8 6E-05 30.5 0.6 20 72-91 7-26 (174)
321 2og2_A Putative signal recogni 64.5 1.7 5.9E-05 34.2 0.6 18 70-87 156-173 (359)
322 2fwr_A DNA repair protein RAD2 64.2 1.9 6.4E-05 33.0 0.7 16 71-86 108-123 (472)
323 2ged_A SR-beta, signal recogni 64.1 1.6 5.4E-05 28.6 0.2 17 71-87 48-64 (193)
324 4gl2_A Interferon-induced heli 63.9 1.7 5.8E-05 34.8 0.4 16 71-86 22-37 (699)
325 1z08_A RAS-related protein RAB 63.9 1.7 5.7E-05 27.5 0.3 14 73-86 8-21 (170)
326 3i5x_A ATP-dependent RNA helic 63.8 1.8 6.2E-05 33.8 0.6 16 70-85 110-125 (563)
327 2pjz_A Hypothetical protein ST 63.8 1.9 6.4E-05 32.2 0.6 20 67-87 27-46 (263)
328 2it1_A 362AA long hypothetical 63.7 1.9 6.5E-05 34.0 0.7 18 68-85 26-43 (362)
329 3bc1_A RAS-related protein RAB 63.6 1.6 5.5E-05 28.0 0.2 13 73-85 13-25 (195)
330 1z6t_A APAF-1, apoptotic prote 63.4 1.8 6.3E-05 34.0 0.5 41 36-87 123-163 (591)
331 2lkc_A Translation initiation 63.4 1.7 5.9E-05 27.7 0.3 16 71-86 8-23 (178)
332 2wv9_A Flavivirin protease NS2 63.3 3.4 0.00012 35.0 2.2 17 70-86 240-256 (673)
333 2yyz_A Sugar ABC transporter, 63.0 1.9 6.7E-05 33.9 0.6 18 68-85 26-43 (359)
334 1z47_A CYSA, putative ABC-tran 62.7 2 6.8E-05 33.9 0.6 18 69-86 39-56 (355)
335 1xjc_A MOBB protein homolog; s 62.6 2 6.7E-05 30.6 0.5 21 72-92 5-25 (169)
336 1upt_A ARL1, ADP-ribosylation 62.6 1.7 5.9E-05 27.5 0.2 15 72-86 8-22 (171)
337 2hxs_A RAB-26, RAS-related pro 62.6 1.8 6E-05 27.7 0.2 14 73-86 8-21 (178)
338 1r2q_A RAS-related protein RAB 62.6 1.7 5.9E-05 27.2 0.2 15 73-87 8-22 (170)
339 2www_A Methylmalonic aciduria 62.5 2.2 7.5E-05 32.7 0.8 21 71-91 74-94 (349)
340 1xx6_A Thymidine kinase; NESG, 62.5 1.9 6.4E-05 30.9 0.4 16 70-85 7-22 (191)
341 1zu4_A FTSY; GTPase, signal re 62.4 1.9 6.6E-05 33.0 0.5 19 70-88 104-122 (320)
342 2v3c_C SRP54, signal recogniti 62.1 3.1 0.00011 33.3 1.7 17 71-87 99-115 (432)
343 2f9l_A RAB11B, member RAS onco 62.1 1.8 6.1E-05 29.0 0.2 14 73-86 7-20 (199)
344 3vkw_A Replicase large subunit 61.9 1.7 5.7E-05 35.9 0.0 16 70-85 160-175 (446)
345 2wsm_A Hydrogenase expression/ 61.8 1.7 5.7E-05 29.4 0.0 17 72-88 31-47 (221)
346 1v43_A Sugar-binding transport 61.4 2.2 7.6E-05 33.8 0.7 18 68-85 34-51 (372)
347 1g29_1 MALK, maltose transport 61.4 2.2 7.4E-05 33.7 0.6 18 68-85 26-43 (372)
348 2bbs_A Cystic fibrosis transme 61.2 1.9 6.5E-05 32.7 0.2 21 67-87 60-80 (290)
349 3clv_A RAB5 protein, putative; 60.9 2 6.7E-05 27.5 0.2 14 73-86 9-22 (208)
350 2p6r_A Afuhel308 helicase; pro 60.8 0.91 3.1E-05 37.2 -1.7 16 70-85 39-54 (702)
351 2oca_A DAR protein, ATP-depend 60.5 1.8 6.1E-05 33.4 -0.0 17 70-86 127-143 (510)
352 3gd7_A Fusion complex of cysti 60.4 2.2 7.4E-05 34.0 0.5 22 68-89 44-65 (390)
353 1z0f_A RAB14, member RAS oncog 60.4 2 6.8E-05 27.3 0.2 14 73-86 17-30 (179)
354 3tqc_A Pantothenate kinase; bi 60.4 2.2 7.4E-05 33.2 0.4 17 72-88 93-109 (321)
355 4dsu_A GTPase KRAS, isoform 2B 60.2 2.1 7E-05 27.5 0.2 14 73-86 6-19 (189)
356 2efe_B Small GTP-binding prote 60.2 2.1 7.2E-05 27.4 0.3 14 73-86 14-27 (181)
357 2a9k_A RAS-related protein RAL 59.9 2 7E-05 27.4 0.2 14 73-86 20-33 (187)
358 2y8e_A RAB-protein 6, GH09086P 59.9 1.7 5.9E-05 27.6 -0.2 14 73-86 16-29 (179)
359 3pqc_A Probable GTP-binding pr 59.4 1.6 5.5E-05 28.2 -0.4 15 72-86 24-38 (195)
360 2yc2_C IFT27, small RAB-relate 59.2 2.7 9.3E-05 27.5 0.7 20 73-92 22-41 (208)
361 3l0i_B RAS-related protein RAB 58.8 5 0.00017 26.6 2.0 20 73-92 35-54 (199)
362 3d31_A Sulfate/molybdate ABC t 58.7 1.7 5.8E-05 34.1 -0.5 18 68-85 23-40 (348)
363 1mh1_A RAC1; GTP-binding, GTPa 58.7 2.2 7.6E-05 27.3 0.2 15 73-87 7-21 (186)
364 2ykg_A Probable ATP-dependent 58.4 2.3 8E-05 34.0 0.3 17 70-86 27-43 (696)
365 1wp9_A ATP-dependent RNA helic 58.4 2.3 8E-05 30.8 0.3 14 73-86 25-38 (494)
366 3dm5_A SRP54, signal recogniti 58.4 2.5 8.6E-05 34.6 0.5 18 71-88 100-117 (443)
367 3t1o_A Gliding protein MGLA; G 58.2 2.3 7.8E-05 27.4 0.2 15 73-87 16-30 (198)
368 3cmu_A Protein RECA, recombina 58.2 2.8 9.6E-05 40.7 0.9 22 67-88 379-400 (2050)
369 1oix_A RAS-related protein RAB 58.2 2.1 7.3E-05 28.7 0.1 13 73-85 31-43 (191)
370 2g6b_A RAS-related protein RAB 57.8 2.3 8E-05 27.1 0.2 14 73-86 12-25 (180)
371 3kkq_A RAS-related protein M-R 57.7 2.4 8E-05 27.4 0.2 14 73-86 20-33 (183)
372 3ugu_A S-arrestin; arrestin fo 57.4 4.2 0.00014 33.5 1.7 45 15-63 294-341 (380)
373 3tkl_A RAS-related protein RAB 57.1 2.4 8.3E-05 27.6 0.2 14 73-86 18-31 (196)
374 1svi_A GTP-binding protein YSX 57.1 1.9 6.4E-05 28.2 -0.4 17 71-87 23-39 (195)
375 1w1w_A Structural maintenance 57.0 2.9 9.9E-05 32.4 0.6 17 70-86 25-41 (430)
376 2yl4_A ATP-binding cassette SU 57.0 5 0.00017 32.7 2.0 20 68-87 367-386 (595)
377 1ksh_A ARF-like protein 2; sma 57.0 2.5 8.4E-05 27.5 0.2 16 72-87 19-34 (186)
378 2wjg_A FEOB, ferrous iron tran 57.0 2.5 8.4E-05 27.4 0.2 16 72-87 8-23 (188)
379 1x3s_A RAS-related protein RAB 56.9 2.5 8.5E-05 27.4 0.2 14 73-86 17-30 (195)
380 2bme_A RAB4A, RAS-related prot 56.6 2.1 7.2E-05 27.6 -0.2 14 73-86 12-25 (186)
381 1moz_A ARL1, ADP-ribosylation 56.6 1.7 5.8E-05 28.0 -0.6 17 71-87 18-34 (183)
382 2fn4_A P23, RAS-related protei 56.6 2.2 7.4E-05 27.1 -0.1 14 73-86 11-24 (181)
383 4ag6_A VIRB4 ATPase, type IV s 56.6 4 0.00014 30.9 1.3 22 70-91 34-55 (392)
384 3bwd_D RAC-like GTP-binding pr 56.4 2.5 8.7E-05 27.0 0.2 14 73-86 10-23 (182)
385 2oil_A CATX-8, RAS-related pro 56.4 2.6 8.8E-05 27.7 0.2 13 73-85 27-39 (193)
386 3vkg_A Dynein heavy chain, cyt 56.4 2.2 7.6E-05 43.0 -0.1 17 69-85 1302-1318(3245)
387 3sqw_A ATP-dependent RNA helic 56.4 2.9 0.0001 33.3 0.6 16 70-85 59-74 (579)
388 3ld9_A DTMP kinase, thymidylat 55.9 2.9 0.0001 30.8 0.5 19 70-88 20-38 (223)
389 2gj8_A MNME, tRNA modification 55.8 2.4 8.3E-05 27.9 0.0 15 71-85 4-18 (172)
390 2hf9_A Probable hydrogenase ni 55.7 2.3 8E-05 28.8 -0.1 16 72-87 39-54 (226)
391 3o8b_A HCV NS3 protease/helica 55.6 6 0.00021 34.0 2.4 17 69-85 230-246 (666)
392 3fdi_A Uncharacterized protein 55.5 2.7 9.4E-05 29.6 0.2 16 71-86 6-21 (201)
393 3f8t_A Predicted ATPase involv 55.4 1.1 3.9E-05 38.0 -2.0 41 34-85 211-252 (506)
394 1zbd_A Rabphilin-3A; G protein 55.4 2.7 9.3E-05 27.8 0.2 14 73-86 10-23 (203)
395 2bov_A RAla, RAS-related prote 55.0 2.8 9.5E-05 27.5 0.2 15 73-87 16-30 (206)
396 2onk_A Molybdate/tungstate ABC 55.0 3 0.0001 30.5 0.4 14 72-85 25-38 (240)
397 3tqf_A HPR(Ser) kinase; transf 55.0 3.3 0.00011 30.9 0.6 16 70-85 15-30 (181)
398 1u0l_A Probable GTPase ENGC; p 54.8 3.3 0.00011 30.8 0.6 17 69-85 167-183 (301)
399 2ga8_A Hypothetical 39.9 kDa p 54.8 3.1 0.00011 33.5 0.5 14 74-87 27-40 (359)
400 1ls1_A Signal recognition part 54.7 3.3 0.00011 31.1 0.6 19 70-88 97-115 (295)
401 1z06_A RAS-related protein RAB 54.7 2.9 9.9E-05 27.4 0.2 14 73-86 22-35 (189)
402 2yhs_A FTSY, cell division pro 54.5 3.1 0.00011 34.9 0.5 17 70-86 292-308 (503)
403 3cph_A RAS-related protein SEC 54.4 2.9 9.8E-05 27.7 0.2 14 73-86 22-35 (213)
404 4bas_A ADP-ribosylation factor 54.4 3 0.0001 27.2 0.3 16 72-87 18-33 (199)
405 3con_A GTPase NRAS; structural 54.2 2.9 9.9E-05 27.2 0.2 14 73-86 23-36 (190)
406 1vg8_A RAS-related protein RAB 54.1 3 0.0001 27.5 0.2 14 73-86 10-23 (207)
407 3p32_A Probable GTPase RV1496/ 54.1 3.2 0.00011 31.5 0.4 19 71-89 79-97 (355)
408 2axn_A 6-phosphofructo-2-kinas 54.1 3.3 0.00011 33.8 0.5 16 71-86 35-50 (520)
409 3qf4_B Uncharacterized ABC tra 54.1 6 0.00021 32.4 2.1 19 68-86 378-396 (598)
410 1lw7_A Transcriptional regulat 54.0 2.4 8.3E-05 32.1 -0.2 18 71-88 170-187 (365)
411 2p67_A LAO/AO transport system 53.9 2.9 0.0001 31.6 0.2 19 70-88 55-73 (341)
412 1yqt_A RNAse L inhibitor; ATP- 53.9 3.9 0.00013 33.4 1.0 18 69-86 310-327 (538)
413 2gf9_A RAS-related protein RAB 53.8 3 0.0001 27.4 0.2 14 73-86 24-37 (189)
414 3h1t_A Type I site-specific re 53.7 3.2 0.00011 33.0 0.4 16 71-86 198-213 (590)
415 2yv5_A YJEQ protein; hydrolase 53.5 3.6 0.00012 30.7 0.6 20 69-88 163-182 (302)
416 2p5s_A RAS and EF-hand domain 53.2 3.1 0.00011 27.7 0.2 16 72-87 29-44 (199)
417 2a5j_A RAS-related protein RAB 53.0 3.2 0.00011 27.4 0.2 14 74-87 24-37 (191)
418 3t5g_A GTP-binding protein RHE 52.8 2.7 9.1E-05 27.1 -0.2 15 73-87 8-22 (181)
419 1zd9_A ADP-ribosylation factor 52.5 3.2 0.00011 27.4 0.2 14 73-86 24-37 (188)
420 4aby_A DNA repair protein RECN 52.5 1.6 5.6E-05 32.8 -1.4 21 67-88 57-77 (415)
421 1uaa_A REP helicase, protein ( 52.4 3.9 0.00013 33.4 0.7 15 71-85 15-29 (673)
422 2atv_A RERG, RAS-like estrogen 52.2 3.3 0.00011 27.4 0.2 14 73-86 30-43 (196)
423 3ihw_A Centg3; RAS, centaurin, 52.1 3.4 0.00012 27.5 0.3 15 73-87 22-36 (184)
424 1oxx_K GLCV, glucose, ABC tran 52.0 1.7 5.9E-05 34.0 -1.4 18 68-85 28-45 (353)
425 1nij_A Hypothetical protein YJ 51.9 4 0.00014 30.6 0.7 16 72-87 5-20 (318)
426 3ux8_A Excinuclease ABC, A sub 51.7 4.2 0.00014 33.6 0.8 21 68-88 345-365 (670)
427 1m7b_A RND3/RHOE small GTP-bin 51.2 2.9 0.0001 27.4 -0.2 13 74-86 10-22 (184)
428 4a15_A XPD helicase, ATP-depen 51.1 4.1 0.00014 33.8 0.7 17 70-86 21-37 (620)
429 1fzq_A ADP-ribosylation factor 51.0 2.9 0.0001 27.6 -0.2 16 72-87 17-32 (181)
430 2q3h_A RAS homolog gene family 50.9 3.5 0.00012 27.2 0.2 15 73-87 22-36 (201)
431 3reg_A RHO-like small GTPase; 50.9 3.5 0.00012 27.1 0.2 13 73-85 25-37 (194)
432 3c5c_A RAS-like protein 12; GD 50.9 3.6 0.00012 27.3 0.2 15 73-87 23-37 (187)
433 2v1x_A ATP-dependent DNA helic 50.8 6.5 0.00022 32.4 1.8 16 70-85 58-73 (591)
434 2f7s_A C25KG, RAS-related prot 50.7 3.7 0.00013 27.5 0.3 14 73-86 27-40 (217)
435 3nh6_A ATP-binding cassette SU 50.7 2.4 8.4E-05 32.5 -0.7 18 68-85 77-94 (306)
436 3dz8_A RAS-related protein RAB 50.6 3 0.0001 27.5 -0.2 13 74-86 26-38 (191)
437 2fh5_B SR-beta, signal recogni 50.6 3.6 0.00012 27.5 0.2 16 72-87 8-23 (214)
438 2npi_A Protein CLP1; CLP1-PCF1 50.5 3.4 0.00012 33.4 0.1 20 70-89 137-156 (460)
439 2fg5_A RAB-22B, RAS-related pr 50.4 3.1 0.00011 27.5 -0.1 12 74-85 26-37 (192)
440 3tui_C Methionine import ATP-b 50.3 4.7 0.00016 32.1 0.9 19 67-85 50-68 (366)
441 1x6v_B Bifunctional 3'-phospho 50.2 4.3 0.00015 34.7 0.7 17 70-86 51-67 (630)
442 4a4z_A Antiviral helicase SKI2 50.1 5.4 0.00018 35.2 1.3 16 70-85 53-68 (997)
443 3b5x_A Lipid A export ATP-bind 49.9 5.1 0.00017 32.6 1.0 19 68-86 366-384 (582)
444 3th5_A RAS-related C3 botulinu 55.5 3.4 0.00012 27.5 0.0 18 73-90 32-49 (204)
445 2b6h_A ADP-ribosylation factor 49.8 3.2 0.00011 27.8 -0.2 15 73-87 31-45 (192)
446 2o5v_A DNA replication and rep 49.8 4.3 0.00015 31.9 0.5 16 72-87 27-42 (359)
447 1m2o_B GTP-binding protein SAR 49.8 3.2 0.00011 27.7 -0.2 15 73-87 25-39 (190)
448 2bcg_Y Protein YP2, GTP-bindin 49.6 3.2 0.00011 27.6 -0.2 14 73-86 10-23 (206)
449 2iwr_A Centaurin gamma 1; ANK 49.6 2.6 8.9E-05 27.1 -0.6 13 74-86 10-22 (178)
450 4djt_A GTP-binding nuclear pro 49.5 3.9 0.00013 27.4 0.2 16 73-88 13-28 (218)
451 1bif_A 6-phosphofructo-2-kinas 49.4 4.2 0.00014 32.1 0.4 16 71-86 39-54 (469)
452 2h57_A ADP-ribosylation factor 49.3 3.3 0.00011 27.1 -0.1 16 73-88 23-38 (190)
453 3cbq_A GTP-binding protein REM 49.2 3.9 0.00013 27.6 0.2 15 73-87 25-39 (195)
454 1zj6_A ADP-ribosylation factor 49.1 3.3 0.00011 27.1 -0.2 17 72-88 17-33 (187)
455 1ega_A Protein (GTP-binding pr 48.7 3.8 0.00013 30.5 0.1 17 70-86 7-23 (301)
456 1wb9_A DNA mismatch repair pro 48.7 4.7 0.00016 35.0 0.7 18 70-87 606-623 (800)
457 3ux8_A Excinuclease ABC, A sub 48.6 5.1 0.00017 33.1 0.8 20 68-87 41-60 (670)
458 2gf0_A GTP-binding protein DI- 48.5 3.5 0.00012 26.8 -0.1 15 73-87 10-24 (199)
459 2il1_A RAB12; G-protein, GDP, 48.1 4.1 0.00014 27.0 0.2 15 73-87 28-42 (192)
460 4a82_A Cystic fibrosis transme 48.0 4.8 0.00017 32.7 0.6 19 68-86 364-382 (578)
461 3a1s_A Iron(II) transport prot 47.8 4.3 0.00015 29.5 0.2 15 73-87 7-21 (258)
462 1w4r_A Thymidine kinase; type 47.6 4.1 0.00014 30.1 0.1 16 70-85 19-34 (195)
463 1ewq_A DNA mismatch repair pro 47.6 4.9 0.00017 34.8 0.6 17 71-87 576-592 (765)
464 2qag_B Septin-6, protein NEDD5 47.6 6.4 0.00022 32.1 1.2 21 68-88 37-59 (427)
465 1yrb_A ATP(GTP)binding protein 47.5 4.8 0.00016 27.9 0.5 19 70-88 13-31 (262)
466 2obl_A ESCN; ATPase, hydrolase 47.5 4.4 0.00015 31.4 0.3 20 68-87 68-87 (347)
467 2o52_A RAS-related protein RAB 47.4 3.6 0.00012 27.6 -0.2 14 73-86 27-40 (200)
468 1yqt_A RNAse L inhibitor; ATP- 47.4 5.5 0.00019 32.6 0.9 18 68-85 44-61 (538)
469 2qu8_A Putative nucleolar GTP- 47.4 4.3 0.00015 27.8 0.2 15 72-86 30-44 (228)
470 1f6b_A SAR1; gtpases, N-termin 47.1 3 0.0001 28.1 -0.6 15 73-87 27-41 (198)
471 3lxx_A GTPase IMAP family memb 46.9 4.5 0.00016 28.1 0.2 16 72-87 30-45 (239)
472 2cjw_A GTP-binding protein GEM 46.8 4.4 0.00015 27.2 0.2 14 74-87 9-22 (192)
473 1e9r_A Conjugal transfer prote 46.7 3.9 0.00013 31.3 -0.1 16 71-86 53-68 (437)
474 2x77_A ADP-ribosylation factor 46.7 3 0.0001 27.2 -0.6 15 73-87 24-38 (189)
475 4a2q_A RIG-I, retinoic acid in 46.7 4.7 0.00016 33.7 0.4 16 70-85 262-277 (797)
476 3crv_A XPD/RAD3 related DNA he 46.5 5.4 0.00018 32.0 0.7 17 70-86 21-37 (551)
477 3oes_A GTPase rhebl1; small GT 46.5 3.8 0.00013 27.3 -0.2 13 73-85 26-38 (201)
478 2atx_A Small GTP binding prote 46.1 4 0.00014 26.7 -0.1 14 73-86 20-33 (194)
479 3bk7_A ABC transporter ATP-bin 46.0 6.2 0.00021 33.0 1.0 19 68-86 379-397 (607)
480 1knx_A Probable HPR(Ser) kinas 45.5 5.6 0.00019 31.2 0.6 16 70-85 146-161 (312)
481 2vl7_A XPD; helicase, unknown 45.5 5.9 0.0002 31.9 0.7 17 70-86 25-41 (540)
482 3b60_A Lipid A export ATP-bind 45.5 5 0.00017 32.6 0.3 18 68-85 366-383 (582)
483 2dpy_A FLII, flagellum-specifi 45.4 5 0.00017 32.2 0.3 22 67-88 153-174 (438)
484 2xgj_A ATP-dependent RNA helic 45.4 5 0.00017 35.5 0.4 18 69-86 99-116 (1010)
485 1gku_B Reverse gyrase, TOP-RG; 45.3 5.4 0.00019 35.2 0.5 18 69-86 69-86 (1054)
486 2fv8_A H6, RHO-related GTP-bin 45.3 4.2 0.00014 27.3 -0.1 14 73-86 27-40 (207)
487 3thx_A DNA mismatch repair pro 45.2 5.7 0.00019 35.3 0.7 21 70-90 661-681 (934)
488 2rcn_A Probable GTPase ENGC; Y 45.1 5.9 0.0002 31.4 0.7 17 69-85 213-229 (358)
489 2j1l_A RHO-related GTP-binding 45.0 4.3 0.00015 27.6 -0.1 15 73-87 36-50 (214)
490 3gj0_A GTP-binding nuclear pro 45.0 4.3 0.00015 27.5 -0.1 15 73-87 17-31 (221)
491 2gco_A H9, RHO-related GTP-bin 45.0 4.2 0.00014 27.2 -0.2 14 73-86 27-40 (201)
492 3gmt_A Adenylate kinase; ssgci 44.8 5.6 0.00019 29.7 0.5 17 73-89 10-26 (230)
493 2h17_A ADP-ribosylation factor 44.7 3.4 0.00012 27.0 -0.6 15 73-87 23-37 (181)
494 2j0v_A RAC-like GTP-binding pr 44.7 4.2 0.00015 27.1 -0.2 14 73-86 11-24 (212)
495 3ozx_A RNAse L inhibitor; ATP 44.4 6.1 0.00021 32.5 0.7 19 68-86 291-309 (538)
496 3ozx_A RNAse L inhibitor; ATP 44.1 8.4 0.00029 31.7 1.5 27 57-85 13-39 (538)
497 3l9o_A ATP-dependent RNA helic 43.4 4.4 0.00015 36.2 -0.3 16 70-85 198-213 (1108)
498 2hup_A RAS-related protein RAB 43.4 4.7 0.00016 27.1 -0.1 14 73-86 31-44 (201)
499 2xtp_A GTPase IMAP family memb 43.4 4.8 0.00016 28.3 -0.1 16 72-87 23-38 (260)
500 2ffh_A Protein (FFH); SRP54, s 43.4 6.1 0.00021 31.9 0.5 19 70-88 97-115 (425)
No 1
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.56 E-value=2.1e-16 Score=125.13 Aligned_cols=77 Identities=53% Similarity=0.683 Sum_probs=61.2
Q ss_pred CccceeecceeeeeeccccccccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCC
Q psy2779 1 MKIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRT 80 (101)
Q Consensus 1 ~~i~ev~~~~r~~RIaaHSHIkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p 80 (101)
|+++||+++.+.+|+++||||+|+||++...+.+..+.+|||+++++++..++++ ++.+. ..++-+|+.|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~s~i~~~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~~-~~~~~iLl~Gpp 72 (456)
T 2c9o_A 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVEL-------IKSKK-MAGRAVLLAGPP 72 (456)
T ss_dssp --------CHHHHHHHTTTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHH-------HHTTC-CTTCEEEEECCT
T ss_pred CCcccccccccccchhhhhcccCCCCCcccChhhchhhccCHHHHHHHHHHHHHH-------HHhCC-CCCCeEEEECCC
Confidence 5688999988999999999999999999999999999999999999999988888 44433 355678899999
Q ss_pred CCCCC
Q psy2779 81 KCPKP 85 (101)
Q Consensus 81 ~~g~~ 85 (101)
|||||
T Consensus 73 GtGKT 77 (456)
T 2c9o_A 73 GTGKT 77 (456)
T ss_dssp TSSHH
T ss_pred cCCHH
Confidence 99996
No 2
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.52 E-value=1.4e-15 Score=113.16 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=54.8
Q ss_pred CccceeecceeeeeeccccccccccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCC
Q psy2779 1 MKIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRT 80 (101)
Q Consensus 1 ~~i~ev~~~~r~~RIaaHSHIkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p 80 (101)
++++++++..+.+|++.||||+||+|++...|....+.||||++++++...++++ ++..+ ..++.+|+.|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~-------~~~~~-~~~~~vLl~Gpp 79 (368)
T 3uk6_A 8 TKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEM-------IREGK-IAGRAVLIAGQP 79 (368)
T ss_dssp ----------------CCTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHH-------HHTTC-CTTCEEEEEEST
T ss_pred eeehhccccchhhccchhhhhhccCcccccCcCcchhhccChHHHHHHHHHHHHH-------HHcCC-CCCCEEEEECCC
Confidence 4567888888899999999999999999999999889999999999999999988 54443 346889999999
Q ss_pred CCCCCC
Q psy2779 81 KCPKPP 86 (101)
Q Consensus 81 ~~g~~~ 86 (101)
|||||-
T Consensus 80 GtGKT~ 85 (368)
T 3uk6_A 80 GTGKTA 85 (368)
T ss_dssp TSSHHH
T ss_pred CCCHHH
Confidence 999873
No 3
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.69 E-value=4.8e-06 Score=60.20 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=33.4
Q ss_pred eeeccccccccccCCCCCCcccccCcccchHHH----HhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 13 QRISSHSHVKGLGLKENGEANEMAAGLVGQQAA----REVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 13 ~RIaaHSHIkGLGLde~g~a~~~a~GlVGQ~~A----REAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
-|-++|++-...|++++--......++|||..+ .+++..++++ ++....-..+.+|+.||||||||-
T Consensus 9 ~~~~~~~~~~~fg~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~-------l~~~~~~~~~~vLl~G~~GtGKT~ 79 (272)
T 1d2n_A 9 HHGSTMDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQ-------TKNSDRTPLVSVLLEGPPHSGKTA 79 (272)
T ss_dssp ----------------CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHH-------HHHCSSCSEEEEEEECSTTSSHHH
T ss_pred cCCCccccCCCCCCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-------HhccCCCCCeEEEEECCCCCcHHH
Confidence 355778888889999876666667899999766 3333334544 322222345678999999999974
No 4
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.00013 Score=52.37 Aligned_cols=55 Identities=13% Similarity=-0.061 Sum_probs=32.5
Q ss_pred CcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 31 EANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 31 ~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+...-+.++|++++.+..--.+..-...-...+.-.....+-+|+.||||||||
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT 65 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHH
Confidence 4455667899999998887544433000000000001224567899999999997
No 5
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.27 E-value=0.00088 Score=46.98 Aligned_cols=48 Identities=21% Similarity=0.099 Sum_probs=28.0
Q ss_pred cCcccchHHHHhhcceeeec-cc-ceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWE-KS-FQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm-~~-~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-++|++++.+..--+++. +. -.|.+. ..-..+-+|+.||||||||-
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~ 54 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTL 54 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHH
Confidence 45689999988776544443 00 001110 11234568899999999973
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.18 E-value=0.0015 Score=47.63 Aligned_cols=41 Identities=15% Similarity=0.021 Sum_probs=26.7
Q ss_pred ccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+..+.++||.++.++.- ... + . . ..+-+|+.||||||||-
T Consensus 20 ~~~f~~i~G~~~~~~~l~--~~~-------~-~-~--~~~~vLl~G~~GtGKT~ 60 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALL--LTA-------V-D-P--GIGGVLVFGDRGTGKST 60 (350)
T ss_dssp CCCGGGSCSCHHHHHHHH--HHH-------H-C-G--GGCCEEEECCGGGCTTH
T ss_pred CCCchhccChHHHHHHHH--HHh-------h-C-C--CCceEEEECCCCccHHH
Confidence 345567999999888732 112 1 0 1 12338899999999973
No 7
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.17 E-value=0.00092 Score=49.99 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=30.6
Q ss_pred cccCcccchHHHHhhcceeeecccceeee-eccccccccceEEecCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWEKSFQFER-CKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm~~~~~~~-~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
..-+.++||+.+.++.--.+.+- ..+-. .+. .....+-+|+.||||||||
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~-~~~~~~~~~-~~~~~~~vLl~GppGtGKT 65 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILP-VKFPHLFKG-NRKPTSGILLYGPPGTGKS 65 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHH-HHCGGGCCT-TCCCCCEEEEECSSSSCHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHH-HhCHHHHhc-CCCCCCeEEEECCCCCcHH
Confidence 34567999999998876555220 00000 111 1223456899999999997
No 8
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.06 E-value=0.0012 Score=49.82 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=28.2
Q ss_pred cccchHHHHhhcceeeecccceeeeeccc-----cccccceEEecCCCCCCCCC
Q psy2779 38 GLVGQQAAREVSRAVTWEKSFQFERCKSH-----SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 38 GlVGQ~~AREAaGIVVdm~~~~~~~~~~~-----~~~~g~~ll~~G~p~~g~~~ 86 (101)
-+|||..|.++.-..+.. .+.+.+.. .....+-+|+.||||||||-
T Consensus 16 ~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYN---HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 66 (363)
T ss_dssp HCCSCHHHHHHHHHHHHH---HHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHH
T ss_pred hccCHHHHHHHHHHHHHH---HHhhhccccccccccCCCCeEEEECCCCCCHHH
Confidence 479999999986654421 00111100 11135678899999999974
No 9
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.04 E-value=0.00051 Score=49.64 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=28.5
Q ss_pred cccchHHHHhhcceeeecccceeeeec-c---ccccccceEEecCCCCCCCCC
Q psy2779 38 GLVGQQAAREVSRAVTWEKSFQFERCK-S---HSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 38 GlVGQ~~AREAaGIVVdm~~~~~~~~~-~---~~~~~g~~ll~~G~p~~g~~~ 86 (101)
-+|||..+.++.--+++. +.+-+.. . ...-.+.-+|+.||||||||-
T Consensus 32 ~i~G~~~~~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAAL--LLVERARQKLGLAHETPTLHMSFTGNPGTGKTT 82 (309)
T ss_dssp HSSSCHHHHHHHHHHHHH--HHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHH
T ss_pred HccChHHHHHHHHHHHHH--HHhHHHHHHcCCCCCCCCceEEEECCCCCCHHH
Confidence 589999999987654443 0000000 0 001135578999999999973
No 10
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.92 E-value=0.001 Score=45.18 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=32.0
Q ss_pred cccCCCCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 23 GLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 23 GLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+-++....+....+.+|+...-+++...+.++ +.. . .++.+|+.||||||||=.
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~-~--~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSA-------ASG-D--GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHH-------HHT-C--SCSEEEEECSTTSSHHHH
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHH-------HhC-C--CCCeEEEECCCCCCHHHH
Confidence 345556666656677888722122333333333 211 1 468899999999999743
No 11
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.92 E-value=0.00053 Score=48.90 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=29.7
Q ss_pred cccccCcccchHHHHhhcceeeecccceee-eeccccccccceEEecCCCCCCCC
Q psy2779 32 ANEMAAGLVGQQAAREVSRAVTWEKSFQFE-RCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 32 a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~-~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+....+-+|||..+.++.--+++. +.+- ....-..-..+-+|+.||||||||
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~vll~G~~GtGKT 58 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF--LKYPERYANLGAKIPKGVLLVGPPGTGKT 58 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH--HHCHHHHHHHSCCCCSCCCCBCSSCSSHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HHChHHHHHCCCCCCceEEEECCCCCcHH
Confidence 344556799999998887655543 0000 000000001234789999999986
No 12
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.90 E-value=0.0013 Score=52.86 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=31.9
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+.+|||..+......+..+ +++.+. ..+|+.||||||||=
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~-------i~~~~~---~~vLL~GppGtGKTt 65 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRA-------IEAGHL---HSMILWGPPGTGKTT 65 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHH-------HHHTCC---CEEEEECSTTSSHHH
T ss_pred CHHHhCCcHHHHhchHHHHHH-------HHcCCC---cEEEEECCCCCcHHH
Confidence 357799999998776667676 544442 568999999999974
No 13
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.89 E-value=0.0015 Score=47.16 Aligned_cols=49 Identities=14% Similarity=0.001 Sum_probs=30.6
Q ss_pred cccCcccchHHHHhhcceeeeccc---ceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWEKS---FQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm~~---~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
...+.++||..+.++.--.+.... -.|.+. ....+.+|+.||||||||-
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~----~~~~~~vll~Gp~GtGKT~ 69 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGL----RAPAKGLLLFGPPGNGKTL 69 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG----GCCCSEEEEESSSSSCHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC----CCCCCeEEEECcCCCCHHH
Confidence 345679999999887754443200 001111 1135788999999999973
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.89 E-value=0.0018 Score=46.13 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=29.5
Q ss_pred cccccCcccchHHHHhhcceeeec-ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 32 ANEMAAGLVGQQAAREVSRAVTWE-KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 32 a~~~a~GlVGQ~~AREAaGIVVdm-~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+....+-++|+..+.++.--+++. +... |.+. ..--.+-+|+.||||||||
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT 59 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKT 59 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHH
Confidence 344567799999998877654443 0000 0000 0011234889999999987
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.78 E-value=0.0015 Score=48.03 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=31.7
Q ss_pred CCCCcccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 28 ENGEANEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 28 e~g~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+...|. ..+.+|||..+.++..-.++. .+.... .-..+|+.||||||||=
T Consensus 21 ~~~~p~-~~~~iiG~~~~~~~l~~~l~~-------~~~~~~-~~~~vll~G~~GtGKT~ 70 (338)
T 3pfi_A 21 TSLRPS-NFDGYIGQESIKKNLNVFIAA-------AKKRNE-CLDHILFSGPAGLGKTT 70 (338)
T ss_dssp --CCCC-SGGGCCSCHHHHHHHHHHHHH-------HHHTTS-CCCCEEEECSTTSSHHH
T ss_pred hccCCC-CHHHhCChHHHHHHHHHHHHH-------HHhcCC-CCCeEEEECcCCCCHHH
Confidence 334444 457899999999886655544 211111 12468899999999973
No 16
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.71 E-value=0.0024 Score=43.17 Aligned_cols=37 Identities=16% Similarity=-0.002 Sum_probs=24.3
Q ss_pred chHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 41 GQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 41 GQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+|++|.+.+--.++- -..-.|..+++.||||||||-.
T Consensus 18 ~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 18 SQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp HHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHH
Confidence 466666655433322 2333588999999999999743
No 17
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.70 E-value=0.0011 Score=50.19 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=28.8
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccc--------------------cccccceEEecCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSH--------------------SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~--------------------~~~~g~~ll~~G~p~~g~~ 85 (101)
.-+|||++|.++.-..+.. .+.|.+.+ .......+|+.||||||||
T Consensus 21 ~~viGq~~ak~~l~~~~~~---~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT 86 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYN---HYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKT 86 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHH
T ss_pred hHccCcHHHHHHHHHHHHH---HHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHH
Confidence 4579999999988765521 01111110 0012456889999999997
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.64 E-value=0.0021 Score=48.70 Aligned_cols=49 Identities=12% Similarity=-0.058 Sum_probs=29.5
Q ss_pred ccCcccchHHHHhhcceeeec--ccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWE--KSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm--~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.-+-++|+++++++.--.+.+ +.-+..+ +.....+-+|+.||||||||-
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~iLL~GppGtGKT~ 60 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPGTGKSY 60 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSC---TTCCCCSEEEEESSSSSCHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHh---CCCCCCceEEEECCCCccHHH
Confidence 345689999998887644432 0000000 111234678899999999973
No 19
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.63 E-value=0.0012 Score=48.79 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=26.8
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
....+|||+.+.+++-.- + ..++-+|+.||||||||
T Consensus 25 ~~~~i~g~~~~~~~l~~~--l-------------~~~~~vll~G~pGtGKT 60 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIG--I-------------CTGGHILLEGVPGLAKT 60 (331)
T ss_dssp HTTTCCSCHHHHHHHHHH--H-------------HHTCCEEEESCCCHHHH
T ss_pred hccceeCcHHHHHHHHHH--H-------------HcCCeEEEECCCCCcHH
Confidence 346799999988765432 2 23567889999999997
No 20
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.61 E-value=0.0036 Score=45.53 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=29.6
Q ss_pred cccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+..+-++|+++..+..--.++- + ++. . .++.+++.||||||||=.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~----~--~~~-~--~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAP----A--LRG-E--KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGG----G--TSS-C--CCCCEEECBCTTSSHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHH----H--HcC-C--CCCcEEEECCCCCCHHHH
Confidence 3447799999887765433322 0 111 1 367899999999999743
No 21
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.59 E-value=0.0019 Score=53.19 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=28.4
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
....+|||+++.+++-+.+ .+++-+|+.||||||||
T Consensus 20 l~~~ivGq~~~i~~l~~al---------------~~~~~VLL~GpPGtGKT 55 (500)
T 3nbx_X 20 LEKGLYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKS 55 (500)
T ss_dssp HHTTCSSCHHHHHHHHHHH---------------HHTCEEEEECCSSSSHH
T ss_pred HHhhhHHHHHHHHHHHHHH---------------hcCCeeEeecCchHHHH
Confidence 4578999999998764433 34678899999999997
No 22
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.47 E-value=0.0041 Score=45.83 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=28.3
Q ss_pred CCCcccccCccc-ch--HHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 29 NGEANEMAAGLV-GQ--QAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 29 ~g~a~~~a~GlV-GQ--~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..++.+..+-|| || ..|..++ ..+ ++... -.+.-+|+.||||||||=
T Consensus 3 ~l~~~~~f~~fv~g~~~~~a~~~~---~~~-------~~~~~-~~~~~lll~G~~GtGKT~ 52 (324)
T 1l8q_A 3 FLNPKYTLENFIVGEGNRLAYEVV---KEA-------LENLG-SLYNPIFIYGSVGTGKTH 52 (324)
T ss_dssp CCCTTCCSSSCCCCTTTHHHHHHH---HHH-------HHTTT-TSCSSEEEECSSSSSHHH
T ss_pred CCCCCCCcccCCCCCcHHHHHHHH---HHH-------HhCcC-CCCCeEEEECCCCCcHHH
Confidence 345666777887 54 4444443 333 22211 135678999999999974
No 23
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.46 E-value=0.002 Score=45.90 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=28.0
Q ss_pred cCcccchHHHHhhcceeeec--ccceeee-eccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWE--KSFQFER-CKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm--~~~~~~~-~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-+|||.+|.++....+.- +..++.. .+ ..-....+|+.||||||||-
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~vll~G~~GtGKT~ 65 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLR--HEVTPKNILMIGPTGVGKTE 65 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH--HHCCCCCEEEECCTTSSHHH
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhccccc--ccCCCceEEEECCCCCCHHH
Confidence 35689999999887543321 0000000 00 00124678899999999973
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.41 E-value=0.0025 Score=47.33 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=30.0
Q ss_pred ccCcccchHHHHhhcceeeec--ccc-eeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWE--KSF-QFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm--~~~-~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.-+.++|+..+.+..--.+.. +.- .|.+. ..-.++.+|+.||||||||-
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~ 64 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTL 64 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHH
Confidence 445689999988776544432 000 01111 22346778999999999973
No 25
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.34 E-value=0.0028 Score=48.57 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=29.9
Q ss_pred ccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
...-+-++||+.+.++.--.+.+- ..+-+.-.......+-+|+.||||||||=
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~-~~~~~~~~~~~~~~~~iLL~GppGtGKT~ 99 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILP-VKFPHLFKGNRKPTSGILLYGPPGTGKSY 99 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHH-HHCGGGGCSSCCCCCCEEEECSTTSCHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHH-HhCHHHHhcCCCCCceEEEECCCCCcHHH
Confidence 334567999999988775444220 00000000111124557899999999973
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.23 E-value=0.0039 Score=45.14 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=29.2
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..+.+|||..+.+...-.++. ..... -....+|+.||||||||-.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~-------~~~~~-~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEA-------AKARK-EPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHH-------HHHHC-SCCCCCEEECCTTCCCHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHH-------HHccC-CCCCcEEEECCCCCCHHHH
Confidence 457799999887765444333 21111 1246788999999999743
No 27
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.22 E-value=0.0029 Score=45.59 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=27.3
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccc---cccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSH---SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~---~~~~g~~ll~~G~p~~g~~~ 86 (101)
...++||..|-+..-..+.- .+.+ ..-....+|+.||||||||-
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~-------~~~~~~~~~~~~~~~ll~G~~GtGKt~ 62 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRR-------ARAGLKDPNRPIGSFLFLGPTGVGKTE 62 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHH-------HHHTCSCTTSCSEEEEEESCSSSSHHH
T ss_pred hhhcCCHHHHHHHHHHHHHH-------HhcCCCCCCCCceEEEEECCCCcCHHH
Confidence 34688999998775444433 1100 00012478999999999974
No 28
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.21 E-value=0.004 Score=41.06 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=25.7
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+.+||+.++.+..- +. ++..+ ...+|+.||||||||-.
T Consensus 16 ~~~~~g~~~~~~~l~---~~-------l~~~~---~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 16 LDEVVGQDEVIQRLK---GY-------VERKN---IPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp GGGCCSCHHHHHHHH---HH-------HHTTC---CCCEEEECSTTSSHHHH
T ss_pred HHHHcCcHHHHHHHH---HH-------HhCCC---CCeEEEECCCCCCHHHH
Confidence 456999988876543 22 22221 23489999999999743
No 29
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.10 E-value=0.0067 Score=43.94 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=29.6
Q ss_pred ccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+-|||+++..+..--.+.- +.... .++.+++.||||||||-.
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~-------~~~~~--~~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAP-------LYREE--KPNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGG-------GGGTC--CCCCEEEEECTTSSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHH-------HHcCC--CCCeEEEECCCCCCHHHH
Confidence 34447799999887764322221 11112 367899999999999743
No 30
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.08 E-value=0.0043 Score=41.07 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=26.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
...+||++++.+..--.++ ..+ ....+|+.||||||||=.
T Consensus 22 ~~~~~g~~~~~~~l~~~l~----------~~~--~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLS----------LGR--IHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHH----------HTC--CCSEEEEECSTTSCHHHH
T ss_pred HHHHhCcHHHHHHHHHHHH----------cCC--CCeEEEEECCCCCCHHHH
Confidence 3569999988775432221 111 134789999999999743
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.03 E-value=0.0042 Score=49.24 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=29.8
Q ss_pred cccCcccchHHHHhhcceeeec--ccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWE--KSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm--~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
..-+-++||+.++++.--.+.+ +..++. ....-..+-+|+.||||||||
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~---~~~~~~~~~vLL~GppGtGKT 181 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLF---TGKRTPWRGILLFGPPGTGKS 181 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTT---SGGGCCCSEEEEECSTTSSHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHh---hccCCCCceEEEECCCCCCHH
Confidence 3446689999999887644422 000000 011123467889999999996
No 32
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.86 E-value=0.0061 Score=42.31 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=17.9
Q ss_pred cccccccceEEecCCCCCCCCCC
Q psy2779 65 SHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 65 ~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
-|-|+.|..+++.|||||||+-.
T Consensus 6 ~~~~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 6 HHHMARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp ---CCCCCCEEEECCTTSCHHHH
T ss_pred ccccccCCEEEEECCCCCCHHHH
Confidence 36788999999999999998643
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.86 E-value=0.0042 Score=47.57 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=30.3
Q ss_pred ccCcccchHHHHhhcceeeecccc---eeeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSF---QFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~---~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
..+.+|||..+.++.--.+..-.. .|.+. ....+-+||.||||||||
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vLL~GppGtGKT 162 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGL----RAPARGLLLFGPPGNGKT 162 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG----GCCCSEEEEESSTTSCHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhccc----CCCCceEEEECCCCCCHH
Confidence 356799999999887655533000 01111 113578999999999997
No 34
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.60 E-value=0.005 Score=50.52 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=29.9
Q ss_pred cccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
...+.++||..+.+.....+.- |..+++.||||||||-
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTt 75 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSM 75 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHH
T ss_pred cccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHH
Confidence 4567899999999876554433 6789999999999863
No 35
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.60 E-value=0.0084 Score=41.48 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|.++++.|+|||||+-..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4789999999999997543
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.49 E-value=0.0073 Score=49.56 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=29.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccc--cccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSH--SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~--~~~~g~~ll~~G~p~~g~~ 85 (101)
.+-+|||++|.++.-+.+.. .|...+.... .....+-+|+.||||||||
T Consensus 14 d~~IvGqe~ak~~l~~av~~-~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRN-RWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHH-HHHHHHSCTTTTTTCCCCCEEEECCTTSSHH
T ss_pred HHHhCCHHHHHHHHHHHHHH-HHhhhccccccccccCCceEEEEcCCCCCHH
Confidence 34589999999998776632 0000000000 0112345789999999985
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.47 E-value=0.0088 Score=43.78 Aligned_cols=40 Identities=5% Similarity=-0.150 Sum_probs=27.2
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+-+|||+++.+..- +. +++++ -...+|++||||||||-
T Consensus 24 ~~~~ivg~~~~~~~l~---~~-------l~~~~--~~~~~L~~G~~G~GKT~ 63 (324)
T 3u61_B 24 TIDECILPAFDKETFK---SI-------TSKGK--IPHIILHSPSPGTGKTT 63 (324)
T ss_dssp STTTSCCCHHHHHHHH---HH-------HHTTC--CCSEEEECSSTTSSHHH
T ss_pred CHHHHhCcHHHHHHHH---HH-------HHcCC--CCeEEEeeCcCCCCHHH
Confidence 3577999998876543 33 22222 13678999999999973
No 38
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.43 E-value=0.0063 Score=44.77 Aligned_cols=46 Identities=7% Similarity=-0.216 Sum_probs=29.7
Q ss_pred ccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+-+||+++..+...-.++- ..... ..+.+++.||||||||-.
T Consensus 16 ~~~p~~l~gr~~~~~~l~~~l~~-------~~~~~--~~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 16 LSVFKEIPFREDILRDAAIAIRY-------FVKNE--VKFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp HHHCSSCTTCHHHHHHHHHHHHH-------HHTTC--CCCEEEEEECTTSSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHH-------HHcCC--CCCcEEEECCCCCCHHHH
Confidence 34447799999887765432222 11112 256899999999999743
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.42 E-value=0.005 Score=43.99 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=20.7
Q ss_pred ccCcccchHHHHhhc-ceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVS-RAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAa-GIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
..+.+|||..+-+.+ ..+... . ..+.-+|+.||||||||
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~-------~-----~~~~~vll~G~~GtGKt 43 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHL-------A-----PLDKPVLIIGERGTGKE 43 (265)
T ss_dssp ------CCCHHHHHHHHHHHHH-------T-----TSCSCEEEECCTTSCHH
T ss_pred ccccceeCCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCCcHH
Confidence 346689987765443 222222 1 12467889999999986
No 40
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.42 E-value=0.013 Score=41.69 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=25.7
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+.+|||+.+.+.. .+. +++++ ...+|+.||||||||-.
T Consensus 16 ~~~~~g~~~~~~~l---~~~-------l~~~~---~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 16 LDEVVGQDEVIQRL---KGY-------VERKN---IPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp GGGSCSCHHHHHHH---HTT-------TTTTC---CCCEEEESSSSSSHHHH
T ss_pred HHHHhCCHHHHHHH---HHH-------HhCCC---CCeEEEECcCCcCHHHH
Confidence 45699999887753 233 22222 12388999999999743
No 41
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.36 E-value=0.01 Score=38.19 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=24.9
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+.+||++++-+.. .+. ++.. ..+.+|+.||||||||=.
T Consensus 21 ~~~~~g~~~~~~~l---~~~-------l~~~---~~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 21 LDPVIGRDEEIRRT---IQV-------LQRR---TKNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCCCCSCHHHHHHH---HHH-------HTSS---SSCEEEEECCTTSCHHHH
T ss_pred ccccccchHHHHHH---HHH-------HhcC---CCCceEEECCCCCCHHHH
Confidence 46689998765442 222 1111 256788999999999743
No 42
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.35 E-value=0.0091 Score=43.73 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=28.0
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccc--eEEecCCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGG--RAVAGGRTKCPKPPN 87 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~--~ll~~G~p~~g~~~~ 87 (101)
...-++|+++..+..--.++- ...+. .+. .+++.||||||||-.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~-------~~~~~--~~~~~~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGN-------WLRNP--GHHYPRATLLGRPGTGKTVT 60 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHH-------HHHST--TSSCCEEEEECCTTSSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHH-------HHcCC--CCCCCeEEEECCCCCCHHHH
Confidence 346799999887764332222 11111 234 899999999999743
No 43
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.27 E-value=0.0083 Score=42.90 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=26.2
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+.+|||+++.+..- ++ +++++ ..-+|+.||||||||-.
T Consensus 24 ~~~~~g~~~~~~~l~---~~-------l~~~~---~~~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLK---HY-------VKTGS---MPHLLFAGPPGVGKTTA 62 (327)
T ss_dssp TTTCCSCHHHHHHHH---HH-------HHHTC---CCEEEEESCTTSSHHHH
T ss_pred HHHhhCCHHHHHHHH---HH-------HHcCC---CCeEEEECcCCCCHHHH
Confidence 456999998877543 33 22222 12489999999999743
No 44
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.20 E-value=0.0076 Score=43.83 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=25.1
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+-+|||+++.+..-- . +++++ . .-+|+.||||||||-.
T Consensus 36 ~~~i~g~~~~~~~l~~---~-------l~~~~-~--~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKK---T-------LKSAN-L--PHMLFYGPPGTGKTST 74 (353)
T ss_dssp TTTCCSCCTTHHHHHH---H-------TTCTT-C--CCEEEECSTTSSHHHH
T ss_pred HHHhhCCHHHHHHHHH---H-------HhcCC-C--CEEEEECCCCCCHHHH
Confidence 4668999887765322 2 22222 1 2388999999999843
No 45
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.12 E-value=0.0068 Score=45.70 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=27.3
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
-+-++||..+.+...+.++- .+.... .-..+++.||||||||=
T Consensus 24 l~~~~g~~~~~~~l~~~i~~-------~~~~~~-~~~~~ll~Gp~G~GKTT 66 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEA-------AKMRGE-VLDHVLLAGPPGLGKTT 66 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHH-------HHHHTC-CCCCEEEESSTTSSHHH
T ss_pred HHHccCcHHHHHHHHHHHHH-------HHhcCC-CCCeEEEECCCCCcHHH
Confidence 45588999888876554433 100000 11568899999999973
No 46
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.10 E-value=0.013 Score=42.97 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=25.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+.+.++.--.+. ++++ . .. +|+.||||||||-
T Consensus 13 ~~~~vg~~~~~~~l~~~~~---------~~~~-~-~~-~ll~Gp~G~GKTt 51 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSD---------QPRD-L-PH-LLLYGPNGTGKKT 51 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTT---------CTTC-C-CC-EEEECSTTSSHHH
T ss_pred HHHhcCCHHHHHHHHHHHh---------hCCC-C-Ce-EEEECCCCCCHHH
Confidence 4569999998776533220 2222 1 23 8899999999864
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.09 E-value=0.011 Score=48.61 Aligned_cols=52 Identities=17% Similarity=0.081 Sum_probs=30.1
Q ss_pred CcccccCcccchHHHHhhcceeeec-ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 31 EANEMAAGLVGQQAAREVSRAVTWE-KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 31 ~a~~~a~GlVGQ~~AREAaGIVVdm-~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+....+-++|+.++.+..-=+++. +..+ |.++ ..+. .+-+|+.||||||||
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~-g~~~--p~gvLL~GppGtGKT 63 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRI-GARM--PKGILLVGPPGTGKT 63 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTT-TCCC--CSEEEEECCTTSSHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhc-CCCC--CCeEEEECCCCCCHH
Confidence 4445566799999998776555543 1000 0001 0011 223789999999986
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.06 E-value=0.009 Score=47.38 Aligned_cols=47 Identities=13% Similarity=-0.067 Sum_probs=29.1
Q ss_pred CCCCcccccCccc-ch--HHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 28 ENGEANEMAAGLV-GQ--QAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 28 e~g~a~~~a~GlV-GQ--~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
....+.+..+-|| || ..|+.++- .+ +++... ..-+++.||||||||-
T Consensus 96 ~~l~~~~tfd~fv~g~~n~~a~~~~~---~~-------a~~~~~--~~~lll~Gp~G~GKTt 145 (440)
T 2z4s_A 96 TPLNPDYTFENFVVGPGNSFAYHAAL---EV-------AKHPGR--YNPLFIYGGVGLGKTH 145 (440)
T ss_dssp CCCCTTCSGGGCCCCTTTHHHHHHHH---HH-------HHSTTS--SCCEEEECSSSSSHHH
T ss_pred cCCCCCCChhhcCCCCchHHHHHHHH---HH-------HhCCCC--CCeEEEECCCCCCHHH
Confidence 3455666777888 64 34444443 33 222221 5678999999999974
No 49
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.01 E-value=0.0044 Score=41.28 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=12.9
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
..-+|+.|||||||+
T Consensus 27 ~~~vll~G~~GtGKt 41 (143)
T 3co5_A 27 TSPVFLTGEAGSPFE 41 (143)
T ss_dssp SSCEEEEEETTCCHH
T ss_pred CCcEEEECCCCccHH
Confidence 456889999999996
No 50
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.0064 Score=49.68 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=34.0
Q ss_pred cccccCCCCCCcccccCcccchHHHHhhcceeeec--ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 21 VKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWE--KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 21 IkGLGLde~g~a~~~a~GlVGQ~~AREAaGIVVdm--~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
++.+.+++ .|...-+-+.|.+++.+..-=.|.+ +.-+ |.+. ..--.+-+|+.||||||||
T Consensus 167 ~~~~~~~~--~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~---g~~~prGvLLyGPPGTGKT 229 (434)
T 4b4t_M 167 VKAMEVDE--KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDM---GIRAPKGALMYGPPGTGKT 229 (434)
T ss_dssp CSCCEEES--SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHH---CCCCCCEEEEESCTTSSHH
T ss_pred hhhcccCC--CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCeeEEECcCCCCHH
Confidence 34444443 3444557788888888876533322 1111 1111 2223466789999999997
No 51
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.92 E-value=0.0093 Score=42.33 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=29.7
Q ss_pred CcccccCcccchHHHHhhcceeeeccccee-eeec--cccccccceEEecCCCCCCCCC
Q psy2779 31 EANEMAAGLVGQQAAREVSRAVTWEKSFQF-ERCK--SHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 31 ~a~~~a~GlVGQ~~AREAaGIVVdm~~~~~-~~~~--~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+...-+-++|++++.+...-++.. |.. ...+ +-..-.| +++.||||||||=
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTt 64 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--LKNPSRFHEMGARIPKG--VLLVGPPGVGKTH 64 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--HHCHHHHHHTTCCCCSE--EEEECCTTSSHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--HHCHHHHHHcCCCCCCe--EEEECCCCCCHHH
Confidence 3455566789999887776544433 100 0000 0011123 8899999999973
No 52
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.90 E-value=0.0097 Score=40.58 Aligned_cols=16 Identities=13% Similarity=-0.170 Sum_probs=13.9
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
+.+++.||||||||-.
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6789999999999754
No 53
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.85 E-value=0.012 Score=44.90 Aligned_cols=49 Identities=10% Similarity=-0.093 Sum_probs=29.7
Q ss_pred cccCcccchHHHHhhcceeeec--cc-ceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWE--KS-FQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm--~~-~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-+-++||+.+.+..--.+.. +. ..|.+. . -..+.+|+.||||||||=
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~---~-~~~~~vLl~GppGtGKT~ 132 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL---R-GPPKGILLFGPPGTGKTL 132 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG---G-SCCSEEEEESSTTSSHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc---c-CCCceEEEECCCCCCHHH
Confidence 3446799999998876544432 00 001111 1 135678899999999973
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.0067 Score=49.60 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=29.5
Q ss_pred ccCcccchHHHHhhcceeeec--ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWE--KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm--~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.-+-+.|.+++.+..-=.|.+ +.-+ |.+. ..---+-+|+.||||||||
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~---g~~~prGvLL~GPPGtGKT 229 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRV---GIKPPKGVLLYGPPGTGKT 229 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTSSHH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCeEEEECCCCCcHH
Confidence 346678888888877655554 1111 1111 2223456779999999997
No 55
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.79 E-value=0.01 Score=48.54 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=27.8
Q ss_pred cccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 38 GLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 38 GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-.+||+++.+..+-.+.++. + +.+. .|..+|+.||||||||
T Consensus 82 di~G~~~vk~~i~~~~~l~~-----~-~~~~-~g~~vll~Gp~GtGKT 122 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQK-----L-TKSL-KGPILCLAGPPGVGKT 122 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHH-----H-SSSC-CSCEEEEESSSSSSHH
T ss_pred HhccHHHHHHHHHHHHHHHH-----h-cccC-CCCEEEEECCCCCCHH
Confidence 37999999887753332210 1 1122 5889999999999986
No 56
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.77 E-value=0.012 Score=43.76 Aligned_cols=16 Identities=13% Similarity=-0.357 Sum_probs=13.4
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
-+.+|+.||||||||-
T Consensus 36 p~~lLl~GppGtGKT~ 51 (293)
T 3t15_A 36 PLILGIWGGKGQGKSF 51 (293)
T ss_dssp CSEEEEEECTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4678899999999973
No 57
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.71 E-value=0.011 Score=43.97 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=23.1
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccce--EEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGR--AVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~--ll~~G~p~~g~~~ 86 (101)
+-++||+.+-+... .. +++ |+. +|+.||||||||-
T Consensus 25 ~~~~g~~~~~~~L~---~~-------i~~-----g~~~~~ll~Gp~G~GKTt 61 (340)
T 1sxj_C 25 DEVYGQNEVITTVR---KF-------VDE-----GKLPHLLFYGPPGTGKTS 61 (340)
T ss_dssp GGCCSCHHHHHHHH---HH-------HHT-----TCCCCEEEECSSSSSHHH
T ss_pred HHhcCcHHHHHHHH---HH-------Hhc-----CCCceEEEECCCCCCHHH
Confidence 44789987765322 22 222 344 8899999999974
No 58
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.67 E-value=0.018 Score=39.65 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=18.3
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-.|.+++++|+||+|||-|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHH
Confidence 4556889999999999998664
No 59
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.61 E-value=0.015 Score=42.63 Aligned_cols=40 Identities=15% Similarity=-0.017 Sum_probs=25.9
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+.+|||+++.+..- +. +++++ ...++|+.||||||||-.
T Consensus 15 ~~~~vg~~~~~~~L~---~~-------l~~~~--~~~~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 15 FADVVGQEHVLTALA---NG-------LSLGR--IHHAYLFSGTRGVGKTSI 54 (373)
T ss_dssp TTTSCSCHHHHHHHH---HH-------HHHTC--CCSEEEEESCTTSSHHHH
T ss_pred hhhccCcHHHHHHHH---HH-------HHhCC--CCeEEEEECCCCCCHHHH
Confidence 345999998876432 22 22222 134789999999999743
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.36 E-value=0.014 Score=37.91 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=24.4
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+||+.++-+.+ .+. +++ -..+-+|+.||||||||-
T Consensus 21 ~~~~~g~~~~~~~l---~~~-------l~~---~~~~~vll~G~~G~GKT~ 58 (187)
T 2p65_A 21 LDPVIGRDTEIRRA---IQI-------LSR---RTKNNPILLGDPGVGKTA 58 (187)
T ss_dssp SCCCCSCHHHHHHH---HHH-------HTS---SSSCEEEEESCGGGCHHH
T ss_pred cchhhcchHHHHHH---HHH-------HhC---CCCCceEEECCCCCCHHH
Confidence 45689998755442 222 111 135678999999999974
No 61
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.34 E-value=0.024 Score=47.08 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=27.3
Q ss_pred cccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
..+..++||+.+.+|.-+.+-- -.--..++.+.-+.--+|+.||||||||
T Consensus 292 ~l~~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT 341 (595)
T 3f9v_A 292 SIAPSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKS 341 (595)
T ss_dssp HTSSTTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHH
T ss_pred hhcchhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHH
Confidence 3456799999999886332111 0000000001111125889999999986
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.01 Score=48.34 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=28.8
Q ss_pred ccCcccchHHHHhhcceeeec--ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWE--KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm--~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.-+-..|.+++.+..-=.|++ +.-+ |.+. ..--.+-+|+.||||||||
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~---g~~~prGiLL~GPPGtGKT 220 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQI---GIDPPRGVLLYGPPGTGKT 220 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTTTHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCceEEEECCCCCCHH
Confidence 345677888888776555543 1111 1111 2223455889999999997
No 63
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.05 E-value=0.011 Score=42.94 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=29.5
Q ss_pred cccccCcccchHHHHhhcceeeecccceee-eec--cccccccceEEecCCCCCCCCC
Q psy2779 32 ANEMAAGLVGQQAAREVSRAVTWEKSFQFE-RCK--SHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 32 a~~~a~GlVGQ~~AREAaGIVVdm~~~~~~-~~~--~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+...-+-++|++++.+.+.=++.. |.-. ..+ +-..-.| +++.||||||||=
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTt 88 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LKNPSRFHEMGARIPKG--VLLVGPPGVGKTH 88 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HHCHHHHHHTTCCCCCE--EEEECCTTSSHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HHCHHHHHHcCCCCCCe--EEEECCCcChHHH
Confidence 445567799999987776544433 1000 000 0011123 8899999999973
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.04 E-value=0.027 Score=44.84 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=24.8
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+.+|||.+.-+. +.++ +.. ....-+|+.||||||||-
T Consensus 179 ld~iiGr~~~i~~---l~~~-------l~r---~~~~~~LL~G~pG~GKT~ 216 (468)
T 3pxg_A 179 LDPVIGRSKEIQR---VIEV-------LSR---RTKNNPVLIGEPGVGKTA 216 (468)
T ss_dssp SCCCCCCHHHHHH---HHHH-------HHC---SSSCEEEEESCTTTTTHH
T ss_pred CCCccCcHHHHHH---HHHH-------Hhc---cCCCCeEEECCCCCCHHH
Confidence 3568999887765 2222 111 124457899999999974
No 65
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.02 E-value=0.0089 Score=44.45 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=23.8
Q ss_pred cCcccchHHHHhhcce-ee-ecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRA-VT-WEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGI-VV-dm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-+-+.|.+++++..-- |+ -++..+..+--+-..-.| +|+.||||||||
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKT 58 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG--VLLAGPPGCGKT 58 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE--EEEESSTTSCHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe--EEEECCCCCcHH
Confidence 3456788888877642 22 221111000001111123 889999999997
No 66
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.0094 Score=48.68 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=28.1
Q ss_pred cCcccchHHHHhhcceeeec--ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWE--KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm--~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-+-+.|.+++.+..-=.|.+ +.-+ |.+. ..--.+-+|+.||||||||
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~---gi~~prGvLL~GPPGTGKT 196 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESL---GIAQPKGVILYGPPGTGKT 196 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCCCEEEESCSSSSHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCceEEeCCCCCCHH
Confidence 35567888888777544443 1111 1111 2223455779999999987
No 67
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.97 E-value=0.025 Score=38.17 Aligned_cols=23 Identities=4% Similarity=0.005 Sum_probs=17.3
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
|..|.++.+.||+||||+-...+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHH
Confidence 34688999999999999754333
No 68
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.90 E-value=0.021 Score=37.91 Aligned_cols=15 Identities=7% Similarity=-0.208 Sum_probs=12.9
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
+.-+|+.|||||||+
T Consensus 24 ~~~vll~G~~GtGKt 38 (145)
T 3n70_A 24 DIAVWLYGAPGTGRM 38 (145)
T ss_dssp CSCEEEESSTTSSHH
T ss_pred CCCEEEECCCCCCHH
Confidence 456889999999985
No 69
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.85 E-value=0.024 Score=38.09 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.8
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+++.|+|||||+-.
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 467899999999998643
No 70
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.72 E-value=0.024 Score=37.87 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|..+++.|+|||||+-...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46788999999999975443
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.022 Score=40.64 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=25.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
.+.+|||+.+.+.. .+. +++++. ..+|+.||||+|||-.
T Consensus 20 ~~~~~g~~~~~~~l---~~~-------l~~~~~---~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 20 LSDIVGNKETIDRL---QQI-------AKDGNM---PHMIISGMPGIGKTTS 58 (323)
T ss_dssp GGGCCSCTHHHHHH---HHH-------HHSCCC---CCEEEECSTTSSHHHH
T ss_pred HHHHHCCHHHHHHH---HHH-------HHcCCC---CeEEEECcCCCCHHHH
Confidence 35699999887643 222 222221 2288999999999743
No 72
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.41 E-value=0.03 Score=38.49 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=18.4
Q ss_pred ccccccceEEecCCCCCCCCCC
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+..-.|.++++.||||||||-+
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHH
Confidence 3455788999999999999866
No 73
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.37 E-value=0.033 Score=38.04 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=16.7
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.|+.+++.||+||||+-...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999864433
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.29 E-value=0.025 Score=47.25 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=26.8
Q ss_pred cCcccchHHHHhhcceeeecccceeeeecccccc---ccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLF---RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~---~g~~ll~~G~p~~g~~~ 86 (101)
..-+|||..|.++.--.+.. .+....- .-+.+|+.||||||||-
T Consensus 490 ~~~viGq~~a~~~l~~~i~~-------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~ 536 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRR-------ARAGLKDPKRPIGSFIFLGPTGVGKTE 536 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHH-------HTTTCSCTTSCSEEEEEESCTTSSHHH
T ss_pred hCcCcChHHHHHHHHHHHHH-------HHcccCCCCCCceEEEEECCCCCCHHH
Confidence 35689999998775443333 2111000 01258899999999973
No 75
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.25 E-value=0.039 Score=37.40 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=18.3
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-.|.++++.||||||||-+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHH
Confidence 4556889999999999998654
No 76
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.22 E-value=0.037 Score=37.37 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=18.2
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
..-.|.++++.||||||||-+..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHH
Confidence 34468899999999999986543
No 77
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.018 Score=47.79 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=30.9
Q ss_pred ccccCcccchHHHHhhcceeeec--ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWE--KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm--~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.-.-+-+.|.+++.+..-=.|++ +.-+ |.+. ..--.+-+|+.||||||||
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~---Gi~~prGvLLyGPPGTGKT 230 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEM---GIKPPKGVILYGAPGTGKT 230 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHH---TCCCCSEEEEESSTTTTHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCCCceECCCCchHH
Confidence 34446677888888887665554 1111 1111 2223456789999999997
No 78
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.07 E-value=0.038 Score=38.06 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=15.2
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+++.|+||||||-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 477899999999999743
No 79
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.05 E-value=0.036 Score=36.58 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=14.1
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999998643
No 80
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.04 E-value=0.019 Score=47.96 Aligned_cols=48 Identities=17% Similarity=-0.002 Sum_probs=29.4
Q ss_pred ccCcccchHHHHhhcceeeec--ccc-eeeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWE--KSF-QFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm--~~~-~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.-+-+.|.+++.+..-=+|.+ +.- .|.+. .+---+-+|+.||||||||
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~---Gi~pprGILLyGPPGTGKT 257 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATL---GIDPPKGILLYGPPGTGKT 257 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCSEEEECSCTTSSHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHC---CCCCCCceEeeCCCCCcHH
Confidence 345678888888887644443 111 11111 2223566789999999997
No 81
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.93 E-value=0.032 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++++.|+||||||-
T Consensus 8 ~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKST 24 (191)
T ss_dssp TTEEEEEEECTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 47889999999999864
No 82
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.92 E-value=0.078 Score=36.05 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=15.4
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+++.||||||||=.
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999743
No 83
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.86 E-value=0.033 Score=37.14 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=14.9
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+++.|+|||||+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTL 21 (193)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467899999999999744
No 84
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.85 E-value=0.042 Score=37.04 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.0
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+++.|+|||||+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 477899999999998743
No 85
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.84 E-value=0.04 Score=45.40 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=29.5
Q ss_pred cccccCcccchHHHHhhcceeeec-ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 32 ANEMAAGLVGQQAAREVSRAVTWE-KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 32 a~~~a~GlVGQ~~AREAaGIVVdm-~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+....+-++||.++.+..-=+++. +..+ |-.+ +-+.-.| +|+.||||||||
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~l-g~~ip~G--vLL~GppGtGKT 78 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM-GARIPKG--VLLVGPPGVGKT 78 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTT-SCCCCSE--EEEECSSSSSHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhc-cCCCCce--EEEECCCCCCHH
Confidence 344556799999998877655443 1000 0000 0111123 889999999986
No 86
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.77 E-value=0.031 Score=46.34 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=26.3
Q ss_pred cCcccchHHHHhhcceeeecccceeeee--ccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERC--KSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~--~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
...+|||.+|.++.--.+.. .+. ++.++ .-..+|+.||||||||-
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~-----~~~g~~~~~~-p~~~~ll~G~~GtGKT~ 503 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKM-----ARAGLGHEHK-PVGSFLFAGPTGVGKTE 503 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHH-----HHTTCSCTTS-CSEEEEEECSTTSSHHH
T ss_pred HhhccCHHHHHHHHHHHHHH-----HhcccCCCCC-CceEEEEECCCCCcHHH
Confidence 45689999988764332222 110 00000 11368899999999973
No 87
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.70 E-value=0.052 Score=47.65 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=29.7
Q ss_pred cCcccchHHHHhhcceeeeccc---ceeeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKS---FQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~---~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-+-+.|.+++.+...-.+.+-. ..|.+. .+--.+-+|+.||||||||
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT 525 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKT 525 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHH
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCch
Confidence 4557788898888776665411 112222 2223455789999999986
No 88
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.60 E-value=0.047 Score=36.30 Aligned_cols=18 Identities=17% Similarity=-0.068 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+++.|+|||||+-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 578899999999999754
No 89
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.58 E-value=0.051 Score=37.38 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=19.0
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+-.|.++++.||||||||-+..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHH
Confidence 455688999999999999865443
No 90
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.53 E-value=0.044 Score=45.11 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.8
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.....|+.||||||||
T Consensus 204 ~~~~~lI~GPPGTGKT 219 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKT 219 (646)
T ss_dssp CSSEEEEECCTTSCHH
T ss_pred CCCceEEECCCCCCHH
Confidence 3458899999999997
No 91
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.46 E-value=0.047 Score=37.02 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.1
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
+..+..+++.|+|||||+-.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHH
Confidence 33578899999999998743
No 92
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.45 E-value=0.048 Score=36.55 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
+..+..+++.|+|||||+-.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHH
T ss_pred cccCCeEEEEeCCCCCHHHH
Confidence 33567899999999999743
No 93
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.25 E-value=0.082 Score=35.01 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=11.0
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.+..+++.|+|||||+-..
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3568999999999998543
No 94
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.03 E-value=0.047 Score=36.46 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+++.|+|||||+-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999743
No 95
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.01 E-value=0.093 Score=36.81 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=15.3
Q ss_pred cccceEEecCCCCCCCCCCceeee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~~ 92 (101)
-.|.++.+.||+||||+-.-.++.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999987655544
No 96
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.98 E-value=0.04 Score=47.25 Aligned_cols=51 Identities=8% Similarity=-0.153 Sum_probs=30.2
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.-+-++|++++.+..--.+.+-...-...++-..-.+..+|+.||||||||
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKT 252 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHH
Confidence 446799998887776544433000000011112335777999999999997
No 97
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.92 E-value=0.049 Score=36.90 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.6
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
..+..+++.|+|||||+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCCEEEEEESTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3578899999999998743
No 98
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.85 E-value=0.034 Score=43.49 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=14.6
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+..+|+.||||||||-
T Consensus 44 ~~~~lli~GpPGTGKT~ 60 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQ 60 (318)
T ss_dssp CCCEEEEECCCSHHHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 37788999999999973
No 99
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.83 E-value=0.061 Score=36.20 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+++.|++||||+-.
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999998643
No 100
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.75 E-value=0.059 Score=36.00 Aligned_cols=18 Identities=11% Similarity=-0.197 Sum_probs=14.4
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
++.+++.|+||||||-..
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467889999999997543
No 101
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.70 E-value=0.047 Score=44.47 Aligned_cols=47 Identities=9% Similarity=-0.033 Sum_probs=26.7
Q ss_pred cCcccchHHHHhhcceeeec--ccce-eeeeccccccccceEEecCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWE--KSFQ-FERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm--~~~~-~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
.+.++|+..+.+..-=.+.. +.-+ |.+. ..-..+-+|+.||||||||
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~---g~~~~~~vLL~GppGtGKT 252 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAI---GVKPPRGILLYGPPGTGKT 252 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCCEEEEECSTTSSHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCCcEEEECcCCCCHH
Confidence 35689998887765433332 0000 0000 1122456889999999997
No 102
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.47 E-value=0.071 Score=36.31 Aligned_cols=20 Identities=15% Similarity=-0.021 Sum_probs=16.9
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|.++.+.||+||||+-+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 58899999999999986544
No 103
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.43 E-value=0.074 Score=36.61 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=18.7
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
..-.|.++++.||+|||||-+-.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 344688999999999999855443
No 104
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.40 E-value=0.039 Score=41.43 Aligned_cols=15 Identities=13% Similarity=0.167 Sum_probs=13.0
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
..-+|+.|||||||+
T Consensus 25 ~~~vLi~Ge~GtGKt 39 (304)
T 1ojl_A 25 DATVLIHGDSGTGKE 39 (304)
T ss_dssp TSCEEEESCTTSCHH
T ss_pred CCcEEEECCCCchHH
Confidence 567889999999986
No 105
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.40 E-value=0.084 Score=39.49 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.5
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+.++++.|+|||||+-
T Consensus 32 ~~~livl~G~sGsGKST 48 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTS 48 (287)
T ss_dssp SCEEEEEECCTTSCTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 36789999999999963
No 106
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.36 E-value=0.089 Score=43.89 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=25.0
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+++-+..--++. . -...-+|+.||||||||-
T Consensus 179 ld~iiG~~~~i~~l~~~l~----------~---~~~~~vLL~G~pGtGKT~ 216 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLS----------R---RTKNNPVLIGEPGVGKTA 216 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHH----------C---SSSCEEEEESCTTTTTHH
T ss_pred CCCccCchHHHHHHHHHHh----------C---CCCCCeEEECCCCCCHHH
Confidence 4569999988775322211 1 123457899999999973
No 107
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.35 E-value=0.073 Score=36.31 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+++.|+|||||+-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999744
No 108
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.24 E-value=0.08 Score=39.91 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=19.9
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.+-.|..++++|+||+|||-|..
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHH
Confidence 456678999999999999987653
No 109
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.17 E-value=0.076 Score=37.13 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.1
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|.++++.||+||||+-...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 58899999999999864433
No 110
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.06 E-value=0.045 Score=46.99 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=29.7
Q ss_pred ccCcccchHHHHhhcceeeecc---cceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEK---SFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~---~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.-+.++|++++++..--.+... ...|.+. .+..++.+|+.||||||||-
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~GppGtGKT~ 526 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCC---CCCCCCCCCCBCCTTSSHHH
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhc---CCCCCceeEEECCCCCCHHH
Confidence 3456788888877654433320 0111122 33457778999999999863
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.85 E-value=0.068 Score=36.32 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=18.6
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
..-.|.++.+.||||||||-+-.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHH
Confidence 444688999999999999755443
No 112
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.57 E-value=0.076 Score=42.59 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=18.6
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+....|+.+|+.||||||||-+.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHH
Confidence 45567788899999999998654
No 113
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.39 E-value=0.072 Score=45.38 Aligned_cols=43 Identities=19% Similarity=0.058 Sum_probs=26.5
Q ss_pred CcccchHHHHhhcceeeecccceeeeecccccc---ccceEEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLF---RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~---~g~~ll~~G~p~~g~~~ 86 (101)
..+|||..|-++..-.+.. ...+-.- .-..+|+.||||||||=
T Consensus 558 ~~viG~~~a~~~l~~~i~~-------~~~g~~~~~~p~~~vLl~Gp~GtGKT~ 603 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRR-------ARAGLKDPNRPIGSFLFLGPTGVGKTE 603 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHH-------HGGGCSCSSSCSEEEEEBSCSSSSHHH
T ss_pred cccCCcHHHHHHHHHHHHH-------HhcccCCCCCCceEEEEECCCCCCHHH
Confidence 4689999987775444333 2111000 01478899999999963
No 114
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.17 E-value=0.089 Score=37.23 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=15.3
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..|+.+++.||||||||
T Consensus 74 ~~g~~~~i~g~TGsGKT 90 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKT 90 (235)
T ss_dssp HHCSEEEEECCTTSSHH
T ss_pred hcCCEEEEEeCCCCCcH
Confidence 35889999999999998
No 115
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.13 E-value=0.089 Score=42.21 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=27.4
Q ss_pred cCcccchHHHHhhcceeeec-cc---ceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWE-KS---FQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm-~~---~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.+-+|||+++.+..--.++- .. ..|.+......-..+.+|+.||||||||-
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTt 92 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTT 92 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHH
Confidence 35699999887764433322 00 00000000000023689999999999973
No 116
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.07 E-value=0.088 Score=38.29 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=19.3
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+-.|.++++.||||||||-+..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHH
Confidence 455789999999999999866443
No 117
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.99 E-value=0.087 Score=36.76 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCCceee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.|+.+.+.||+||||+-...++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5788999999999987544443
No 118
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=88.91 E-value=0.21 Score=39.33 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=16.7
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
-+..++.+|+.+|||||||=
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~ 36 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTR 36 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTT
T ss_pred HHhcCCcEEEECCCCCCHHH
Confidence 34457889999999999985
No 119
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.89 E-value=0.14 Score=37.64 Aligned_cols=19 Identities=11% Similarity=-0.027 Sum_probs=15.1
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
...+++++-|||||||.-.
T Consensus 27 ~k~kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp TSCEEEEEECCTTCCHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3467889999999999643
No 120
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.85 E-value=0.07 Score=35.68 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=15.0
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+++.|+|||||+-.
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999744
No 121
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.82 E-value=0.073 Score=40.48 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=14.2
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
.+.+|+.||||||||-+
T Consensus 58 kn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYF 74 (212)
T ss_dssp CSEEEEESCGGGCHHHH
T ss_pred ccEEEEECCCCCCHHHH
Confidence 45699999999999844
No 122
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.47 E-value=0.1 Score=43.21 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=23.6
Q ss_pred CcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 37 AGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 37 ~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
+-+|||.+.-+. +.++ .. ...+.-+|+.||||||||-
T Consensus 186 d~~iGr~~~i~~---l~~~-------l~---~~~~~~vlL~G~~GtGKT~ 222 (758)
T 1r6b_X 186 DPLIGREKELER---AIQV-------LC---RRRKNNPLLVGESGVGKTA 222 (758)
T ss_dssp CCCCSCHHHHHH---HHHH-------HT---SSSSCEEEEECCTTSSHHH
T ss_pred CCccCCHHHHHH---HHHH-------Hh---ccCCCCeEEEcCCCCCHHH
Confidence 457888776554 2222 11 1135668899999999973
No 123
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.43 E-value=0.088 Score=38.90 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=26.5
Q ss_pred cccCcccchHHHHhhcceee-ecccceeeeeccccccccceEEe--cCCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVT-WEKSFQFERCKSHSLFRGGRAVA--GGRTKCPKPP 86 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVV-dm~~~~~~~~~~~~~~~g~~ll~--~G~p~~g~~~ 86 (101)
+...-|||+++..+..--.+ +- +..+-.-.++.+++ .||||+|||-
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~-------~~~~~~~~~~~~li~i~G~~G~GKT~ 67 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNR-------LLSGAGLSDVNMIYGSIGRVGIGKTT 67 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHH-------HHTSSCBCCEEEEEECTTCCSSSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHhHH-------HhcCCCCCCCEEEEeCcCcCCCCHHH
Confidence 34467999887555432222 11 11110013568889 9999999974
No 124
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.43 E-value=0.11 Score=39.21 Aligned_cols=16 Identities=13% Similarity=-0.168 Sum_probs=13.9
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
+.-+++.||||||||=
T Consensus 152 ~~~lll~G~~GtGKT~ 167 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSY 167 (308)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 5778999999999973
No 125
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.31 E-value=0.12 Score=37.41 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=15.0
Q ss_pred cccccccceEEecCCCCCCCC
Q psy2779 65 SHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 65 ~~~~~~g~~ll~~G~p~~g~~ 85 (101)
-|-|-.|.++++.||+||||+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKS 30 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKS 30 (219)
T ss_dssp -----CCCEEEEECCTTSCHH
T ss_pred cccCCCCcEEEEECCCCCCHH
Confidence 456778999999999999975
No 126
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.18 E-value=0.094 Score=34.55 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
...+++.|+|||||+-..
T Consensus 6 ~~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999997543
No 127
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.18 E-value=0.11 Score=35.68 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.9
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++.+.|++||||+-
T Consensus 24 ~g~~i~l~G~sGsGKST 40 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKST 40 (200)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 47899999999999974
No 128
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.05 E-value=0.13 Score=37.13 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=16.2
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|..+++.|+|||||+-...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 57889999999999975443
No 129
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.02 E-value=0.11 Score=37.73 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=20.3
Q ss_pred cccccceEEecCCCCCCCCCCceee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.+..|.++++.||||||||-+...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHH
Confidence 5667999999999999998765443
No 130
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.86 E-value=0.11 Score=38.53 Aligned_cols=24 Identities=13% Similarity=-0.101 Sum_probs=19.4
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.+-.|.++++.||||||||-+.-
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHH
Confidence 345668899999999999987653
No 131
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.66 E-value=0.14 Score=37.40 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=16.9
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..+.|+.+++.||+||||+-.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHH
Confidence 346799999999999998643
No 132
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.65 E-value=0.12 Score=37.29 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.9
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.+..+++.|+|||||+-.
T Consensus 31 ~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp SCEEEEEESCGGGTTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467899999999999743
No 133
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.62 E-value=0.14 Score=34.86 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=14.0
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55788999999999743
No 134
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.43 E-value=0.13 Score=38.70 Aligned_cols=24 Identities=8% Similarity=-0.182 Sum_probs=19.3
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.+-.|.++++.||||||||-+..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHH
Confidence 355678899999999999986643
No 135
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.25 E-value=0.16 Score=35.29 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=14.2
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56788999999999754
No 136
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.05 E-value=0.15 Score=37.04 Aligned_cols=17 Identities=12% Similarity=-0.150 Sum_probs=14.0
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 45789999999999743
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.03 E-value=0.14 Score=34.99 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.0
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
..++++.|+|||||+-.
T Consensus 18 ~~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SSCEEEECSTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35789999999999744
No 138
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.90 E-value=0.18 Score=38.55 Aligned_cols=23 Identities=13% Similarity=-0.050 Sum_probs=18.8
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+-.|.++++.||||||||-+.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHH
Confidence 45568899999999999986643
No 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.75 E-value=0.22 Score=34.51 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=16.4
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|.++.+.||+|||||-+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 47889999999999985443
No 140
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.64 E-value=0.16 Score=34.18 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|..+++.|+||||||-..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4788999999999997543
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.53 E-value=0.16 Score=33.95 Aligned_cols=15 Identities=20% Similarity=-0.064 Sum_probs=12.3
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|+|||||+-.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 578999999999743
No 142
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.46 E-value=0.17 Score=39.83 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=19.5
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.+-.|..++++|+||+|||-|..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal 218 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFAL 218 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHH
Confidence 345678899999999999987643
No 143
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.26 E-value=0.18 Score=33.81 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|..+++.|++||||+-..
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4778899999999997543
No 144
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.22 E-value=0.18 Score=35.95 Aligned_cols=38 Identities=5% Similarity=-0.073 Sum_probs=24.9
Q ss_pred ccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 35 MAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 35 ~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
...-|||.++.-+.. .+. ++ .|+.+++.||+|+|||-.
T Consensus 10 ~~~~~~gR~~el~~L---~~~-------l~-----~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 10 RREDIFDREEESRKL---EES-------LE-----NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp SGGGSCSCHHHHHHH---HHH-------HH-----HCSEEEEECCTTSSHHHH
T ss_pred ChHhcCChHHHHHHH---HHH-------Hh-----cCCeEEEECCCcCCHHHH
Confidence 345688887654442 222 11 147999999999999743
No 145
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.19 E-value=0.18 Score=37.53 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=16.1
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|..+++.||+|||||-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 3688999999999999743
No 146
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.03 E-value=0.18 Score=38.92 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
...+|+.||||||||=+.
T Consensus 104 ~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999997543
No 147
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.99 E-value=0.22 Score=39.26 Aligned_cols=24 Identities=13% Similarity=0.118 Sum_probs=19.7
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
..+-.|..++++|+||+|||-|..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHH
Confidence 356678999999999999987653
No 148
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.65 E-value=0.19 Score=39.09 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=18.3
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-.|+++++.||||||||-+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHH
Confidence 4556899999999999998653
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.57 E-value=0.19 Score=34.04 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=14.4
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
...+++.|+|||||+-..
T Consensus 15 ~~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999997543
No 150
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.30 E-value=0.17 Score=34.63 Aligned_cols=19 Identities=16% Similarity=-0.097 Sum_probs=15.3
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
+.++.+.|+|||||+-...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 6788899999999975443
No 151
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.29 E-value=0.2 Score=39.21 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.2
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.++.+++.||+|||||-.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467999999999999744
No 152
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.22 E-value=0.21 Score=33.01 Aligned_cols=17 Identities=18% Similarity=-0.039 Sum_probs=13.5
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
..+++.|+|||||+-..
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999997443
No 153
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.14 E-value=0.2 Score=36.10 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=13.8
Q ss_pred eEEecCCCCCCCCCCc
Q psy2779 73 RAVAGGRTKCPKPPNT 88 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~ 88 (101)
+.|+.|+||||||=+.
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 6789999999998764
No 154
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.12 E-value=0.19 Score=35.10 Aligned_cols=17 Identities=29% Similarity=0.010 Sum_probs=14.0
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999743
No 155
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.12 E-value=0.24 Score=33.97 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=14.7
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
+..+.+.|+|||||+-...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999975443
No 156
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.03 E-value=0.23 Score=41.11 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.++.+++.|+||||||-
T Consensus 163 ~~~~~vi~G~pGTGKTt 179 (608)
T 1w36_D 163 TRRISVISGGPGTGKTT 179 (608)
T ss_dssp TBSEEEEECCTTSTHHH
T ss_pred cCCCEEEEeCCCCCHHH
Confidence 57899999999999983
No 157
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.85 E-value=0.25 Score=38.74 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=18.4
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-.|+++++.|+||||||-+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHH
Confidence 4557899999999999998654
No 158
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.76 E-value=0.21 Score=33.47 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.1
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+-+++.+|||||||-
T Consensus 37 ~~~~~li~~~TGsGKT~ 53 (207)
T 2gxq_A 37 EGKDLIGQARTGTGKTL 53 (207)
T ss_dssp TTCCEEEECCTTSCHHH
T ss_pred CCCCEEEECCCCChHHH
Confidence 35678899999999983
No 159
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.68 E-value=0.23 Score=43.67 Aligned_cols=15 Identities=13% Similarity=-0.039 Sum_probs=12.7
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
-+-+|+.||||||||
T Consensus 238 p~GILL~GPPGTGKT 252 (806)
T 3cf2_A 238 PRGILLYGPPGTGKT 252 (806)
T ss_dssp CCEEEEECCTTSCHH
T ss_pred CCeEEEECCCCCCHH
Confidence 356789999999997
No 160
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.63 E-value=0.15 Score=40.10 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.4
Q ss_pred cccccceEEecCCCCCCCCCCce
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+-.|..++++|+||+|||-|..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 55678899999999999997753
No 161
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.62 E-value=0.22 Score=35.26 Aligned_cols=22 Identities=14% Similarity=-0.108 Sum_probs=16.4
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+-.|.++.+.||+||||+-.-.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3458899999999999974433
No 162
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.61 E-value=0.3 Score=36.05 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=13.8
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
+|..|..+++.|++||||+-..
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp --CCCCEEEEECCC---CHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHH
Confidence 4557899999999999997433
No 163
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.59 E-value=0.25 Score=34.25 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.4
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
..|.++.+-||+||||+-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp -CCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3588999999999998743
No 164
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.58 E-value=0.24 Score=40.79 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
..+..|+.||||||||-
T Consensus 194 ~~~~~li~GppGTGKT~ 210 (624)
T 2gk6_A 194 QRPLSLIQGPPGTGKTV 210 (624)
T ss_dssp TCSEEEEECCTTSCHHH
T ss_pred cCCCeEEECCCCCCHHH
Confidence 35688999999999984
No 165
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.56 E-value=0.3 Score=32.86 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.7
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 39 ~~~~~lv~apTGsGKT 54 (206)
T 1vec_A 39 SGRDILARAKNGTGKS 54 (206)
T ss_dssp TTCCEEEECCSSSTTH
T ss_pred cCCCEEEECCCCCchH
Confidence 3567889999999998
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.44 E-value=0.21 Score=39.53 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=18.1
Q ss_pred ccccccceEEecCCCCCCCCCC
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.+-.|.++++.||||||||-+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTL 77 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTL 77 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHH
Confidence 3555688999999999999855
No 167
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.05 E-value=0.21 Score=34.68 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=13.8
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999743
No 168
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.95 E-value=0.26 Score=35.46 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+..+++.|+|||||+-...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356789999999999754443
No 169
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.81 E-value=0.27 Score=33.87 Aligned_cols=17 Identities=12% Similarity=-0.107 Sum_probs=14.0
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+.++.+.|++||||+-.
T Consensus 4 ~~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTV 20 (218)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45788999999999753
No 170
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.70 E-value=0.26 Score=34.17 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=15.4
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|..+++.|+|||||+-..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3778999999999997443
No 171
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.62 E-value=0.27 Score=39.35 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=19.9
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+-.|..++++|+||+|||-|..-
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ 216 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALK 216 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHH
Confidence 566789999999999999876543
No 172
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.52 E-value=0.26 Score=34.42 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=13.8
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999754
No 173
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.44 E-value=0.38 Score=36.36 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=14.3
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+.+|+.||||+||+
T Consensus 33 ~g~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKS 48 (205)
T ss_dssp TTEEEEEECCCTTTTH
T ss_pred CCEEEEEECCCCCCHH
Confidence 4788999999999996
No 174
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=83.37 E-value=0.28 Score=36.30 Aligned_cols=16 Identities=19% Similarity=0.002 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|.+.|++|+||+|||
T Consensus 11 ~G~i~litG~mGsGKT 26 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKT 26 (223)
T ss_dssp CCEEEEEECSTTSCHH
T ss_pred CcEEEEEECCCCCcHH
Confidence 5889999999999997
No 175
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.35 E-value=0.27 Score=38.34 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.8
Q ss_pred cccceEEecCCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~ 87 (101)
-.|..+++.||+|||||-.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999999743
No 176
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=83.21 E-value=0.3 Score=34.58 Aligned_cols=20 Identities=25% Similarity=-0.044 Sum_probs=15.6
Q ss_pred cceEEecCCCCCCCCCCcee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~ 90 (101)
+..+++.|+|||||+-.-.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56889999999999754433
No 177
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=83.18 E-value=0.31 Score=40.37 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=14.6
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
..+.+++.|+||||||-
T Consensus 203 ~~~~~~I~G~pGTGKTt 219 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKST 219 (574)
T ss_dssp TCSEEEEECCTTSCHHH
T ss_pred hCCEEEEEcCCCCCHHH
Confidence 35789999999999983
No 178
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.02 E-value=0.29 Score=39.29 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.8
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+++++.||+|||||-
T Consensus 166 ~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKST 182 (418)
T ss_dssp SSEEEEEECSTTSCHHH
T ss_pred cCCeEEEECCCCCCHHH
Confidence 57899999999999863
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.90 E-value=0.28 Score=37.84 Aligned_cols=23 Identities=9% Similarity=-0.123 Sum_probs=18.2
Q ss_pred ccccccceEEecCCCCCCCCCCc
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
...-.|.++++.||||||||-+.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 34557889999999999997543
No 180
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.83 E-value=0.29 Score=32.62 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=13.0
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
.++.++.||+||||+
T Consensus 26 ~g~~~i~G~NGsGKS 40 (182)
T 3kta_A 26 KGFTAIVGANGSGKS 40 (182)
T ss_dssp SSEEEEEECTTSSHH
T ss_pred CCcEEEECCCCCCHH
Confidence 448899999999986
No 181
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.48 E-value=0.34 Score=45.99 Aligned_cols=20 Identities=20% Similarity=-0.002 Sum_probs=16.6
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.||.+|+.||||||||=+
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~l 1098 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTL 1098 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHH
T ss_pred CCCCCEEEEEcCCCCChHHH
Confidence 34688999999999999744
No 182
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.33 E-value=0.27 Score=35.04 Aligned_cols=37 Identities=8% Similarity=-0.022 Sum_probs=24.3
Q ss_pred ccccCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCC
Q psy2779 33 NEMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 33 ~~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~ 86 (101)
.....-|||.++.-+.. .- + . . +.+++.||+|+|||-
T Consensus 9 ~~~~~~~~gR~~el~~L--~~-l-------~------~-~~v~i~G~~G~GKT~ 45 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKL--KG-L-------R------A-PITLVLGLRRTGKSS 45 (357)
T ss_dssp CCSGGGSCCCHHHHHHH--HH-T-------C------S-SEEEEEESTTSSHHH
T ss_pred CCCHHHhcChHHHHHHH--HH-h-------c------C-CcEEEECCCCCCHHH
Confidence 33456789977644432 22 3 1 1 589999999999974
No 183
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.03 E-value=0.32 Score=38.29 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=18.3
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-.|.++++.||||||||-+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtla 91 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLA 91 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHH
Confidence 4556889999999999998654
No 184
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=81.97 E-value=0.72 Score=36.18 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.7
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
+..|+-+|+.+|||||||=-
T Consensus 5 l~~g~~vlv~a~TGSGKT~~ 24 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRR 24 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTT
T ss_pred hhCCCCEEEEcCCCCCHHHH
Confidence 34688999999999999853
No 185
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.95 E-value=0.32 Score=33.24 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.8
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 50 ~~~~~lv~~pTGsGKT 65 (224)
T 1qde_A 50 EGHDVLAQAQSGTGKT 65 (224)
T ss_dssp TTCCEEEECCTTSSHH
T ss_pred cCCCEEEECCCCCcHH
Confidence 3566889999999998
No 186
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=81.83 E-value=0.33 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=13.9
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 61 ~~~~~li~a~TGsGKT 76 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKT 76 (236)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred CCCCEEEEeCCCCcHH
Confidence 4677889999999998
No 187
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.70 E-value=0.39 Score=33.86 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=13.8
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
+..+++.|+|||||+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999743
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=81.41 E-value=0.31 Score=33.23 Aligned_cols=20 Identities=15% Similarity=-0.049 Sum_probs=15.7
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|.++.+.||+||||+-...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 46788899999999975443
No 189
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.33 E-value=0.35 Score=38.59 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=19.5
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.+-.|.++++.||||||||-+-.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHH
Confidence 455678899999999999986654
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.25 E-value=0.29 Score=33.88 Aligned_cols=22 Identities=9% Similarity=-0.117 Sum_probs=17.3
Q ss_pred cccceEEecCCCCCCCCCCcee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
-.+.++.+.|++|||||-+..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3577899999999999865443
No 191
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=81.12 E-value=0.42 Score=37.55 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=13.3
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
+.+|+.|+||||||-
T Consensus 46 ~~~li~G~aGTGKT~ 60 (459)
T 3upu_A 46 HHVTINGPAGTGATT 60 (459)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred CEEEEEeCCCCCHHH
Confidence 389999999999983
No 192
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.98 E-value=0.37 Score=33.22 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=14.0
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||||||
T Consensus 56 ~~~~~l~~apTGsGKT 71 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKT 71 (228)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred CCCCEEEECCCCChHH
Confidence 4677889999999998
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.93 E-value=0.38 Score=36.08 Aligned_cols=16 Identities=0% Similarity=-0.199 Sum_probs=13.3
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
..++|+.||||+|||-
T Consensus 24 ~~a~L~~G~~G~GKt~ 39 (334)
T 1a5t_A 24 HHALLIQALPGMGDDA 39 (334)
T ss_dssp CSEEEEECCTTSCHHH
T ss_pred ceeEEEECCCCchHHH
Confidence 3478999999999864
No 194
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=80.90 E-value=0.79 Score=35.86 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=14.5
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
++..+|+.+|||||||=
T Consensus 18 ~~~~~lv~a~TGsGKT~ 34 (451)
T 2jlq_A 18 KKRLTIMDLHPGAGKTK 34 (451)
T ss_dssp TTCEEEECCCTTSSCCT
T ss_pred cCCeEEEECCCCCCHhh
Confidence 45667999999999996
No 195
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.62 E-value=0.42 Score=37.94 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=18.1
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|..+++.|||||||+-+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 34688999999999999765443
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.59 E-value=0.34 Score=32.34 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=14.7
Q ss_pred ceEEecCCCCCCCCCCcee
Q psy2779 72 GRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~~ 90 (101)
.++.+.|++||||+-...+
T Consensus 9 ~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999755433
No 197
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.30 E-value=0.24 Score=39.31 Aligned_cols=24 Identities=4% Similarity=-0.129 Sum_probs=19.8
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+..|..++++|+||+|||-|..-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~ 261 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQ 261 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHH
Confidence 466789999999999999876543
No 198
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.46 E-value=0.38 Score=39.51 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=15.0
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|..+++.||||||||-.
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577799999999999743
No 199
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=79.31 E-value=0.44 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.7
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 30 ~~~~~lv~~~TGsGKT 45 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKT 45 (337)
T ss_dssp TTCCEEEECCTTSSHH
T ss_pred cCCCEEEEcCCCCcHH
Confidence 3567889999999998
No 200
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=79.16 E-value=0.6 Score=34.19 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.4
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..|+-+++.+|||||||
T Consensus 75 ~~~~~~lv~a~TGsGKT 91 (414)
T 3eiq_A 75 IKGYDVIAQAQSGTGKT 91 (414)
T ss_dssp HTTCCEEECCCSCSSSH
T ss_pred hCCCCEEEECCCCCccc
Confidence 34667899999999998
No 201
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=78.92 E-value=0.4 Score=36.99 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=17.2
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.-.|..+++.||+|||||-.-.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHH
Confidence 4468899999999999974433
No 202
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.89 E-value=0.47 Score=33.03 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.9
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 65 ~~~~~l~~a~TGsGKT 80 (245)
T 3dkp_A 65 HGRELLASAPTGSGKT 80 (245)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred CCCCEEEECCCCCcHH
Confidence 4667899999999998
No 203
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.83 E-value=0.48 Score=38.04 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=19.1
Q ss_pred cccccceEEecCCCCCCCCCCcee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
..-.|.++++.||||||||-+..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHH
Confidence 344699999999999999865544
No 204
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=78.83 E-value=0.52 Score=40.78 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.5
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.++..|+.||||||||-
T Consensus 370 ~~~~~lI~GppGTGKT~ 386 (800)
T 2wjy_A 370 QRPLSLIQGPPGTGKTV 386 (800)
T ss_dssp TSSEEEEECCTTSCHHH
T ss_pred cCCeEEEEcCCCCCHHH
Confidence 36788999999999984
No 205
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=77.61 E-value=0.57 Score=40.48 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+..+|+.||||||||-
T Consensus 374 ~~~~~lI~GppGTGKT~ 390 (802)
T 2xzl_A 374 QRPLSLIQGPPGTGKTV 390 (802)
T ss_dssp TCSEEEEECSTTSSHHH
T ss_pred cCCCEEEECCCCCCHHH
Confidence 36678999999999984
No 206
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.54 E-value=1.1 Score=32.14 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++.+.||+|||||-.
T Consensus 21 ~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HCSEEEEECCTTSSTTHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999854
No 207
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.53 E-value=0.58 Score=37.55 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=19.3
Q ss_pred ccccccceEEecCCCCCCCCCCce
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.....|.++++.|+||||||-+-.
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~ 299 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVS 299 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHH
Confidence 356678899999999999975543
No 208
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.42 E-value=0.51 Score=38.06 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=16.4
Q ss_pred ccccccceEEecCCCCCCCCCC
Q psy2779 66 HSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 66 ~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
+.+-.| ++++.||||||||-+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL 44 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNF 44 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHH
Confidence 344456 789999999999854
No 209
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.41 E-value=0.62 Score=32.84 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.0
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.+..+.+.|++||||+-...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46788999999999975443
No 210
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=77.41 E-value=0.21 Score=33.42 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=14.0
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.++-+|+.+|||+|||-
T Consensus 47 ~~~~~li~~~tGsGKT~ 63 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTR 63 (216)
T ss_dssp TTCCEEEECSCHHHHHH
T ss_pred cCCCEEEEcCCCCCHHH
Confidence 35678899999999984
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.41 E-value=0.55 Score=37.44 Aligned_cols=15 Identities=27% Similarity=0.054 Sum_probs=13.4
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
+.+++|.||||||||
T Consensus 40 ~~lIvI~GPTgsGKT 54 (339)
T 3a8t_A 40 EKLLVLMGATGTGKS 54 (339)
T ss_dssp CEEEEEECSTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 568999999999986
No 212
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=77.32 E-value=0.63 Score=36.49 Aligned_cols=18 Identities=22% Similarity=0.010 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
...++++.|+|||||+-+
T Consensus 257 ~~~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTF 274 (416)
T ss_dssp SCCEEEEESCTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 467899999999999744
No 213
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.26 E-value=0.58 Score=34.82 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.3
Q ss_pred cceEEecCCCCCCCCCCcee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~ 90 (101)
|..+++.|++||||+-...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 88899999999999754433
No 214
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=77.22 E-value=0.57 Score=31.98 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=13.0
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
|+-+++.+|||+|||
T Consensus 51 ~~~~li~~~TGsGKT 65 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKT 65 (220)
T ss_dssp TCCEEEECCTTSCHH
T ss_pred CCCEEEECCCCCchh
Confidence 456889999999998
No 215
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=77.15 E-value=0.3 Score=37.14 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=13.0
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
...+|+.||||||||
T Consensus 18 ~~~~Lf~Gp~G~GKt 32 (305)
T 2gno_A 18 GISILINGEDLSYPR 32 (305)
T ss_dssp SEEEEEECSSSSHHH
T ss_pred CcEEEEECCCCCCHH
Confidence 458999999999995
No 216
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=76.92 E-value=0.47 Score=36.37 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=17.6
Q ss_pred ccccceEEecCCCCCCCCCCcee
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.-.|..+++.||+|||||-+-.+
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~ 190 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKS 190 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHH
Confidence 34688999999999999754433
No 217
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.83 E-value=0.66 Score=33.05 Aligned_cols=14 Identities=36% Similarity=0.209 Sum_probs=12.8
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
+-+++.+|||||||
T Consensus 45 ~~~l~~~~TGsGKT 58 (367)
T 1hv8_A 45 YNIVAQARTGSGKT 58 (367)
T ss_dssp SEEEEECCSSSSHH
T ss_pred CCEEEECCCCChHH
Confidence 67889999999998
No 218
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=76.48 E-value=0.61 Score=33.35 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.5
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..|+-+++.+|||||||
T Consensus 78 ~~~~~~lv~a~TGsGKT 94 (249)
T 3ber_A 78 LQGRDIIGLAETGSGKT 94 (249)
T ss_dssp HTTCCEEEECCTTSCHH
T ss_pred hCCCCEEEEcCCCCCch
Confidence 35677889999999998
No 219
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=76.40 E-value=0.61 Score=33.29 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=14.3
Q ss_pred ceEEecCCCCCCCCCCce
Q psy2779 72 GRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~ 89 (101)
.++.++|+|||||+-+..
T Consensus 23 ~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 468899999999975443
No 220
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=75.92 E-value=0.78 Score=33.36 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.5
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.||+||||+-
T Consensus 27 ~i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp EECTTCEEEEECSTTSSHHH
T ss_pred EECCCCEEEEECCCCCCHHH
Confidence 34468899999999999974
No 221
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=75.86 E-value=0.78 Score=33.30 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=16.0
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
..-.|.++.+.||+||||+
T Consensus 27 ~i~~Ge~~~iiG~nGsGKS 45 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKS 45 (235)
T ss_dssp EECTTCEEEEECSTTSSHH
T ss_pred EEcCCCEEEEECCCCCcHH
Confidence 3446889999999999986
No 222
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=75.82 E-value=0.67 Score=33.44 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.3
Q ss_pred cccceEEecCCCCCCCCCCce
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~ 89 (101)
+.|..+++.|++||||+-...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~ 24 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRD 24 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHH
Confidence 358899999999999874443
No 223
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=75.70 E-value=0.7 Score=33.69 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=13.4
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
++-+|+.+|||||||
T Consensus 64 ~~~~lv~apTGsGKT 78 (412)
T 3fht_A 64 PQNLIAQSQSGTGKT 78 (412)
T ss_dssp CCCEEEECCTTSCHH
T ss_pred CCeEEEECCCCchHH
Confidence 478889999999998
No 224
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.68 E-value=0.66 Score=34.13 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=14.2
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||||||
T Consensus 51 ~~~~~lv~a~TGsGKT 66 (417)
T 2i4i_A 51 EKRDLMACAQTGSGKT 66 (417)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred cCCCEEEEcCCCCHHH
Confidence 4677899999999998
No 225
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.41 E-value=0.51 Score=33.99 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.4
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..|+-+|+.+|||||||
T Consensus 89 ~~~~~~lv~a~TGsGKT 105 (262)
T 3ly5_A 89 LEGRDLLAAAKTGSGKT 105 (262)
T ss_dssp HHTCCCEECCCTTSCHH
T ss_pred hCCCcEEEEccCCCCch
Confidence 34677889999999998
No 226
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.34 E-value=0.74 Score=31.12 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.6
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
|..+..++.||+|+||+-
T Consensus 21 f~~g~~~I~G~NGsGKSt 38 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSS 38 (149)
T ss_dssp CCSEEEEEECCTTSSHHH
T ss_pred cCCCeEEEECCCCCCHHH
Confidence 345688999999999863
No 227
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=75.22 E-value=0.53 Score=33.03 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=14.0
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 65 ~g~~~l~~apTGsGKT 80 (242)
T 3fe2_A 65 SGLDMVGVAQTGSGKT 80 (242)
T ss_dssp HTCCEEEEECTTSCHH
T ss_pred CCCCEEEECCCcCHHH
Confidence 5677889999999997
No 228
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.03 E-value=0.68 Score=32.45 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=13.0
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
|+-+++.+|||||||
T Consensus 60 ~~~~l~~a~TGsGKT 74 (253)
T 1wrb_A 60 HRDIMACAQTGSGKT 74 (253)
T ss_dssp TCCEEEECCTTSSHH
T ss_pred CCCEEEECCCCChHH
Confidence 566889999999998
No 229
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.89 E-value=0.71 Score=36.33 Aligned_cols=16 Identities=19% Similarity=-0.024 Sum_probs=13.4
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++.||||||||-.
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4789999999998743
No 230
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.65 E-value=1.5 Score=32.68 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=14.2
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
.++.++.||+||||+-.
T Consensus 24 ~g~~~i~G~NGsGKS~l 40 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNI 40 (322)
T ss_dssp SSEEEEECCTTTCSTHH
T ss_pred CCcEEEECCCCCcHHHH
Confidence 44899999999999843
No 231
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.59 E-value=0.66 Score=34.02 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.5
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||||||
T Consensus 57 ~~~~~li~a~TGsGKT 72 (400)
T 1s2m_A 57 TGRDILARAKNGTGKT 72 (400)
T ss_dssp HTCCEEEECCTTSCHH
T ss_pred cCCCEEEECCCCcHHH
Confidence 3556889999999998
No 232
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.49 E-value=0.77 Score=33.06 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=12.9
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
+-+|+.+|||+|||
T Consensus 45 ~~~lv~a~TGsGKT 58 (395)
T 3pey_A 45 RNMIAQSQSGTGKT 58 (395)
T ss_dssp CCEEEECCTTSCHH
T ss_pred CeEEEECCCCCcHH
Confidence 77889999999998
No 233
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=74.38 E-value=0.39 Score=33.69 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=14.0
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||||||
T Consensus 66 ~~~~~li~apTGsGKT 81 (237)
T 3bor_A 66 KGYDVIAQAQSGTGKT 81 (237)
T ss_dssp TTCCEEECCCSSHHHH
T ss_pred CCCCEEEECCCCCcHH
Confidence 4667889999999998
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.27 E-value=0.79 Score=35.14 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+.++++.|++|||||-
T Consensus 103 ~~~vi~ivG~~GsGKTT 119 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTT 119 (306)
T ss_dssp SCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCChHHH
Confidence 47889999999999974
No 235
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=74.26 E-value=0.73 Score=39.26 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=17.1
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
+.+.|+.+|+.||||||||=
T Consensus 151 r~l~rk~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY 170 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH
T ss_pred HhcCCCEEEEEcCCCCCHHH
Confidence 44578999999999999983
No 236
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=74.25 E-value=0.74 Score=32.03 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.7
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++..|||+|||
T Consensus 60 ~~~~~l~~a~TGsGKT 75 (230)
T 2oxc_A 60 CGLDLIVQAKSGTGKT 75 (230)
T ss_dssp TTCCEEEECCTTSSHH
T ss_pred CCCCEEEECCCCCcHH
Confidence 3567889999999998
No 237
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.22 E-value=0.79 Score=31.68 Aligned_cols=23 Identities=13% Similarity=-0.058 Sum_probs=18.3
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|.++.+-||.|||||-+..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 45888999999999998655444
No 238
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=74.10 E-value=0.85 Score=32.91 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=15.4
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|.++.|.||+||||+-..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678899999999997443
No 239
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=73.98 E-value=0.7 Score=35.33 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=15.0
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
|..+.-++.||+|+|||
T Consensus 23 f~~gl~vi~G~NGaGKT 39 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKS 39 (371)
T ss_dssp CCSEEEEEEECTTSSHH
T ss_pred cCCCeEEEECCCCCCHH
Confidence 56689999999999996
No 240
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.81 E-value=0.81 Score=45.08 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=14.8
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..++-+|+.||||||||
T Consensus 1265 ~~~~~vLL~GPpGtGKT 1281 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKT 1281 (2695)
T ss_dssp HHTCEEEEECSTTSSHH
T ss_pred HCCCeEEEECCCCCCHH
Confidence 35788999999999997
No 241
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=73.66 E-value=0.7 Score=36.80 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=11.9
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
.+.+|+-|+||||||
T Consensus 22 ~~~~lV~a~aGsGKT 36 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKT 36 (647)
T ss_dssp SSCEEEEECTTSCHH
T ss_pred CCCEEEEECCCCCHH
Confidence 455678888999997
No 242
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=73.61 E-value=0.91 Score=32.76 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.8
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
..-.|.++.+.||+||||+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKS 48 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKT 48 (229)
T ss_dssp EEETTCEEEEECCTTSSHH
T ss_pred EEcCCCEEEEECCCCCCHH
Confidence 3346889999999999986
No 243
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=73.33 E-value=0.87 Score=37.22 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=14.3
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.++.+|+.+|||||||
T Consensus 45 ~~~~~lv~apTGsGKT 60 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKT 60 (715)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred CCCcEEEEcCCCCcHH
Confidence 4678999999999998
No 244
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=73.30 E-value=0.91 Score=34.60 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++.+.||+|||||-
T Consensus 101 ~g~vi~lvG~nGsGKTT 117 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTT 117 (304)
T ss_dssp SSSEEEEECSTTSSHHH
T ss_pred CCeEEEEECCCCCcHHH
Confidence 47899999999999874
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=73.21 E-value=0.82 Score=32.89 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.||+||||+
T Consensus 27 i~~Ge~~~iiG~nGsGKS 44 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKS 44 (224)
T ss_dssp EETTCEEEEEECTTSCHH
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 346889999999999986
No 246
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=72.73 E-value=0.95 Score=34.74 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=13.7
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
++-+|+.+|||||||
T Consensus 131 ~~~~l~~a~TGsGKT 145 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKT 145 (479)
T ss_dssp CCEEEEECCSSSSHH
T ss_pred CCcEEEEcCCCCchh
Confidence 488999999999998
No 247
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=72.72 E-value=0.86 Score=33.08 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=13.6
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||+|||
T Consensus 44 ~~~~~lv~a~TGsGKT 59 (391)
T 1xti_A 44 LGMDVLCQAKSGMGKT 59 (391)
T ss_dssp TTCCEEEECSSCSSHH
T ss_pred cCCcEEEECCCCCcHH
Confidence 3566889999999998
No 248
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=72.69 E-value=0.78 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+-+|+.+|||||||=
T Consensus 35 ~~~~~lv~apTGsGKT~ 51 (414)
T 3oiy_A 35 QGKSFTMVAPTGVGKTT 51 (414)
T ss_dssp TTCCEECCSCSSSSHHH
T ss_pred cCCCEEEEeCCCCCHHH
Confidence 45678899999999984
No 249
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=72.61 E-value=0.85 Score=33.66 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.8
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||||||
T Consensus 73 ~~~~~lv~a~TGsGKT 88 (410)
T 2j0s_A 73 KGRDVIAQSQSGTGKT 88 (410)
T ss_dssp TTCCEEEECCTTSSHH
T ss_pred CCCCEEEECCCCCCch
Confidence 4566889999999998
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.37 E-value=0.85 Score=34.48 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=15.7
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|+++++.|++|+|||-..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4789999999999998543
No 251
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=72.29 E-value=0.93 Score=32.19 Aligned_cols=22 Identities=23% Similarity=0.034 Sum_probs=17.1
Q ss_pred ccceEEecCCCCCCCCCCceee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.|.++-+.||+||||+-...++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4678889999999998655443
No 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.05 E-value=1 Score=33.27 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.2
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 29 i~~Ge~~~liG~nGsGKS 46 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKS 46 (262)
T ss_dssp ECTTCEEEEECCTTSSHH
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 336889999999999985
No 253
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=72.02 E-value=0.98 Score=34.46 Aligned_cols=21 Identities=10% Similarity=-0.062 Sum_probs=17.0
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|.++.+.||+|||||-+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHH
Confidence 588999999999999755443
No 254
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.98 E-value=1 Score=32.71 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=15.2
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.||+|||||
T Consensus 29 i~~Ge~~~l~G~nGsGKS 46 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKT 46 (240)
T ss_dssp EETTCEEEEECSTTSSHH
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 346889999999999985
No 255
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=71.80 E-value=1.2 Score=33.21 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=16.0
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
..-.|.++.+.||+||||+
T Consensus 33 ~i~~Ge~~~liG~nGsGKS 51 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKS 51 (266)
T ss_dssp EEETTCEEEEECCTTSCHH
T ss_pred EEcCCCEEEEECCCCCcHH
Confidence 4446889999999999986
No 256
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=71.55 E-value=0.87 Score=30.41 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.9
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|-.+++.|+||+||+-
T Consensus 25 ~~~~v~lvG~~g~GKST 41 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSS 41 (210)
T ss_dssp CSEEEEEEECTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46678899999999863
No 257
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.51 E-value=1 Score=34.20 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.4
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++.+.||+|||||-.
T Consensus 99 ~g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp SCEEEEEECCTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 588999999999999743
No 258
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=71.47 E-value=0.89 Score=32.59 Aligned_cols=16 Identities=19% Similarity=-0.062 Sum_probs=12.7
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
++.+|+.+|||+|||-
T Consensus 108 ~~~~ll~~~tG~GKT~ 123 (237)
T 2fz4_A 108 DKRGCIVLPTGSGKTH 123 (237)
T ss_dssp TSEEEEEESSSTTHHH
T ss_pred CCCEEEEeCCCCCHHH
Confidence 3447888999999973
No 259
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=71.37 E-value=0.94 Score=33.55 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=16.8
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|..+++.|++||||+-....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~ 46 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQV 46 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 588999999999999754433
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=71.31 E-value=1.2 Score=33.57 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.7
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 31 i~~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKST 49 (275)
T ss_dssp EETTSEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3458899999999999863
No 261
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.30 E-value=0.75 Score=39.17 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=12.4
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
..-+|+.||||||||
T Consensus 191 ~~~vlL~G~pG~GKT 205 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKT 205 (854)
T ss_dssp CCCCEEEECTTSCHH
T ss_pred CCceEEEcCCCCCHH
Confidence 345789999999997
No 262
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.13 E-value=0.88 Score=33.64 Aligned_cols=18 Identities=11% Similarity=-0.213 Sum_probs=14.4
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
..++.++|+|||||+-..
T Consensus 75 ~~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVA 92 (281)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 347889999999998543
No 263
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=71.12 E-value=0.46 Score=32.61 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=13.6
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 40 ~~~~~lv~a~TGsGKT 55 (219)
T 1q0u_A 40 RGESMVGQSQTGTGKT 55 (219)
T ss_dssp HTCCEEEECCSSHHHH
T ss_pred CCCCEEEECCCCChHH
Confidence 3567889999999997
No 264
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.11 E-value=1 Score=32.64 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.||+||||+
T Consensus 25 i~~Ge~~~i~G~nGsGKS 42 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKS 42 (243)
T ss_dssp ECTTEEEEEECCTTSSHH
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 346889999999999986
No 265
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.05 E-value=2 Score=35.79 Aligned_cols=19 Identities=5% Similarity=-0.048 Sum_probs=16.6
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
+..|+-+|+.+|||||||=
T Consensus 183 l~~g~dvlv~a~TGSGKT~ 201 (618)
T 2whx_A 183 FRKKRLTIMDLHPGAGKTK 201 (618)
T ss_dssp GSTTCEEEECCCTTSSTTT
T ss_pred HhcCCeEEEEcCCCCCHHH
Confidence 4568999999999999995
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=70.99 E-value=1.1 Score=32.83 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.||+||||+
T Consensus 32 i~~Ge~~~i~G~nGsGKS 49 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKS 49 (247)
T ss_dssp EETTCEEEEECSTTSSHH
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 336889999999999986
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.87 E-value=1.1 Score=33.05 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 43 i~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKST 61 (260)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3468899999999999864
No 268
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=70.83 E-value=1.1 Score=33.12 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=16.9
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-.|.++.+.||+|||||-+
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 344688999999999998744
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=70.73 E-value=1.1 Score=32.67 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=16.4
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+.||+||||+-.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34688999999999999744
No 270
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=70.64 E-value=1.3 Score=33.35 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.7
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
..-.|.++.+.||+|||||
T Consensus 43 ~i~~Ge~~~liG~NGsGKS 61 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKT 61 (279)
T ss_dssp EEETTCEEEEECCTTSSHH
T ss_pred EEcCCCEEEEECCCCCcHH
Confidence 3446889999999999985
No 271
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.54 E-value=1 Score=34.93 Aligned_cols=25 Identities=8% Similarity=-0.053 Sum_probs=19.8
Q ss_pred cccccceEEecCCCCCCCCCCceee
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
..-.|..+.+.||+||||+-+..++
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHH
Confidence 4456899999999999998665444
No 272
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=70.49 E-value=1.9 Score=32.24 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=14.1
Q ss_pred cceEEecCCCCCCCCCCceee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~ 91 (101)
..++.++|++||||+-.+.++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp SCEEEEESCC---CCTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457889999999999876554
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=70.29 E-value=1.2 Score=32.60 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 30 i~~Ge~~~liG~nGsGKS 47 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKS 47 (257)
T ss_dssp EETTCEEEEECSTTSSHH
T ss_pred EeCCCEEEEECCCCCCHH
Confidence 346889999999999986
No 274
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.21 E-value=1.1 Score=32.48 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=14.7
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
-.|.++.+.||+||||+
T Consensus 33 ~~Ge~~~iiG~NGsGKS 49 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKT 49 (214)
T ss_dssp ETTCCEEEECCTTSSHH
T ss_pred cCCCEEEEECCCCCCHH
Confidence 35888999999999986
No 275
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.07 E-value=1.1 Score=35.58 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=13.7
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
..++++.||||||||-
T Consensus 10 ~~~i~i~GptgsGKt~ 25 (316)
T 3foz_A 10 PKAIFLMGPTASGKTA 25 (316)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CcEEEEECCCccCHHH
Confidence 4678999999999874
No 276
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=70.03 E-value=1 Score=32.89 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.8
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|..+++.|++||||+-..
T Consensus 4 ~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCEEEEEECSSSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5889999999999996433
No 277
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=70.00 E-value=1.1 Score=34.50 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.9
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
.+..++.||+|+|||
T Consensus 23 ~g~~~i~G~NGaGKT 37 (365)
T 3qf7_A 23 SGITVVEGPNGAGKS 37 (365)
T ss_dssp SEEEEEECCTTSSHH
T ss_pred CCeEEEECCCCCCHH
Confidence 348889999999997
No 278
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=69.72 E-value=1.4 Score=31.13 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=18.1
Q ss_pred cccceEEecCCCCCCCCCCceee
Q psy2779 69 FRGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
-.|..+.+.|+.|||||-...++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 35888999999999998655443
No 279
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=69.55 E-value=1 Score=33.66 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=17.1
Q ss_pred ccceEEecCCCCCCCCCCceee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.|.++.+.|++||||+-+..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4678999999999997555443
No 280
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=69.50 E-value=1.3 Score=33.65 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=13.1
Q ss_pred cce-EEecCCCCCCCCC
Q psy2779 71 GGR-AVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~-ll~~G~p~~g~~~ 86 (101)
|+. +++.|+||+|||-
T Consensus 5 g~l~I~~~~kgGvGKTt 21 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTY 21 (228)
T ss_dssp CCEEEEEESSTTSSHHH
T ss_pred ceEEEEEECCCCCcHHH
Confidence 443 8899999999984
No 281
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=69.49 E-value=1.3 Score=32.78 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=16.1
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.||+||||+-
T Consensus 22 ~i~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKST 41 (249)
T ss_dssp EEETTCEEEEECCTTSSHHH
T ss_pred EEcCCCEEEEECCCCCcHHH
Confidence 33468899999999999863
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=69.46 E-value=1.3 Score=33.12 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+.||+|||||
T Consensus 47 i~~Gei~~liG~NGsGKS 64 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKS 64 (263)
T ss_dssp ECTTCEEEEECCTTSSHH
T ss_pred EcCCCEEEEEcCCCCcHH
Confidence 346889999999999985
No 283
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=69.02 E-value=1.1 Score=35.50 Aligned_cols=16 Identities=25% Similarity=-0.056 Sum_probs=13.7
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
.+++++||||||||-+
T Consensus 8 ~lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 8 FLIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCcCcHHHH
Confidence 5789999999999754
No 284
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=68.81 E-value=1.3 Score=32.69 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.2
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.||+||||+-
T Consensus 29 ~i~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKST 48 (266)
T ss_dssp EECTTCEEEEECSTTSSHHH
T ss_pred EEcCCCEEEEECCCCCcHHH
Confidence 34468899999999999863
No 285
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=68.62 E-value=1.3 Score=32.91 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.1
Q ss_pred cccccceEEecCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~ 86 (101)
..-.|.++.+.||+||||+-
T Consensus 41 ~i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp EECTTCEEEEECSTTSSHHH
T ss_pred EECCCCEEEEECCCCCCHHH
Confidence 34468899999999999863
No 286
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.50 E-value=1.3 Score=32.57 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.7
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 28 i~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKST 46 (253)
T ss_dssp EETTCEEEEECCSSSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 287
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.24 E-value=1.4 Score=32.69 Aligned_cols=19 Identities=16% Similarity=-0.018 Sum_probs=15.6
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+|||||-
T Consensus 38 i~~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCcEEEEECCCCCCHHH
Confidence 3368899999999999863
No 288
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=68.21 E-value=1.3 Score=31.12 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.2
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
|..++.++.||+||||+
T Consensus 21 f~~~~~~I~G~NgsGKS 37 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKS 37 (203)
T ss_dssp CCSEEEEEECCTTSSHH
T ss_pred eCCCeEEEEcCCCCCHH
Confidence 34578899999999996
No 289
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.15 E-value=1.4 Score=42.67 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=23.4
Q ss_pred ccceeeeecccc-----------ccccceEEecCCCCCCCCCCc
Q psy2779 56 KSFQFERCKSHS-----------LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 56 ~~~~~~~~~~~~-----------~~~g~~ll~~G~p~~g~~~~~ 88 (101)
..|++.++.+.. +..|+.+++.||||||||-+.
T Consensus 1401 ~~~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA 1444 (2050)
T 3cmu_A 1401 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 1444 (2050)
T ss_dssp TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHH
T ss_pred cccccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHH
Confidence 345566665542 345889999999999998543
No 290
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=68.06 E-value=1.3 Score=34.21 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++.+.||+|||||-
T Consensus 128 ~g~vi~lvG~nGaGKTT 144 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTT 144 (328)
T ss_dssp SSEEEEEECCTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 48899999999999974
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=67.89 E-value=1.4 Score=35.88 Aligned_cols=19 Identities=11% Similarity=-0.148 Sum_probs=15.9
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.++++++.|+||+|||-.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4789999999999998543
No 292
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.69 E-value=1.3 Score=31.61 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=15.3
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.+..+++.|.+||||+-..
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4568899999999998543
No 293
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.44 E-value=1.3 Score=31.39 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=14.2
Q ss_pred ceEEecCCCCCCCCCCce
Q psy2779 72 GRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~ 89 (101)
-++.++|.+||||+-...
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467899999999975443
No 294
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=67.42 E-value=1.3 Score=33.52 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.7
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+..|||+|||
T Consensus 18 ~~~~~l~~~~tGsGKT 33 (555)
T 3tbk_A 18 KGKNTIICAPTGCGKT 33 (555)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred CCCCEEEEeCCCChHH
Confidence 4567889999999998
No 295
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=67.28 E-value=1.4 Score=32.85 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=14.9
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
.-++.+.|||||||+-...
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999975443
No 296
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.13 E-value=1.3 Score=34.10 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=15.0
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..|+-+++.+|||||||
T Consensus 91 ~~g~d~i~~a~TGsGKT 107 (434)
T 2db3_A 91 SSGRDLMACAQTGSGKT 107 (434)
T ss_dssp HTTCCEEEECCTTSSHH
T ss_pred hcCCCEEEECCCCCCch
Confidence 35788999999999998
No 297
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=66.99 E-value=1.4 Score=33.16 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.0
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
|..++-++.||+|+|||-
T Consensus 21 f~~~~~~i~G~NGsGKS~ 38 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSS 38 (339)
T ss_dssp CCSEEEEEECCTTSSHHH
T ss_pred CCCCeEEEECCCCCCHHH
Confidence 456788999999999963
No 298
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=66.79 E-value=1.5 Score=33.58 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=17.3
Q ss_pred ccceEEecCCCCCCCCCCceee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
.|.++.+.|+||+||+-+..++
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l 75 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDAL 75 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5788999999999997654443
No 299
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.76 E-value=0.67 Score=33.58 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.4
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+++.+|||+|||
T Consensus 57 ~~~~~lv~~~TGsGKT 72 (394)
T 1fuu_A 57 EGHDVLAQAQSGTGKT 72 (394)
T ss_dssp HTCCEEECCCSSHHHH
T ss_pred CCCCEEEECCCCChHH
Confidence 3556789999999998
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=66.69 E-value=1.3 Score=27.85 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=10.5
Q ss_pred EEecCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPP 86 (101)
Q Consensus 74 ll~~G~p~~g~~~ 86 (101)
+++.|++|+||+-
T Consensus 8 i~v~G~~~~GKss 20 (168)
T 1z2a_A 8 MVVVGNGAVGKSS 20 (168)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 5688999999764
No 301
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.56 E-value=1.4 Score=32.59 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=13.5
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
++-+|+.+|||||||
T Consensus 131 ~~~~l~~a~TGsGKT 145 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKT 145 (300)
T ss_dssp CCCEEEECCTTSSHH
T ss_pred CCeEEEECCCCCCcc
Confidence 378999999999998
No 302
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.53 E-value=1.4 Score=37.65 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=15.0
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+..+++.||||||||-
T Consensus 108 ~~~~vii~gpTGSGKTt 124 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTT 124 (773)
T ss_dssp HCSEEEEECCTTSSHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 56789999999999985
No 303
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=66.46 E-value=2.3 Score=27.43 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=8.3
Q ss_pred eEEecCCCCCCCCCCceee
Q psy2779 73 RAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~~~~ 91 (101)
-+++.|++++||+-+-...
T Consensus 10 ki~v~G~~~~GKssl~~~l 28 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRF 28 (183)
T ss_dssp EEEEECCCCC---------
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678899999998765443
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=66.15 E-value=1.4 Score=28.18 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=11.2
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|+||+||+-
T Consensus 9 ~i~v~G~~~~GKSs 22 (177)
T 1wms_A 9 KVILLGDGGVGKSS 22 (177)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999863
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=66.09 E-value=1.4 Score=28.01 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=10.7
Q ss_pred EEecCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPP 86 (101)
Q Consensus 74 ll~~G~p~~g~~~ 86 (101)
+++.|+||+||+-
T Consensus 7 i~i~G~~~vGKSs 19 (175)
T 2nzj_A 7 VVLLGDPGVGKTS 19 (175)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCccHHH
Confidence 5788999999764
No 306
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=66.01 E-value=1.5 Score=34.82 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.4
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 27 i~~Ge~~~llGpsGsGKS 44 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKT 44 (359)
T ss_dssp ECTTCEEEEEESTTSSHH
T ss_pred EcCCCEEEEECCCCchHH
Confidence 346889999999999986
No 307
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=65.90 E-value=1.4 Score=28.06 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 10 ~i~v~G~~~~GKSs 23 (182)
T 1ky3_A 10 KVIILGDSGVGKTS 23 (182)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999864
No 308
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=65.82 E-value=2 Score=33.93 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=13.6
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
++-+|+.+|||||||
T Consensus 158 ~~~~ll~apTGsGKT 172 (508)
T 3fho_A 158 PRNMIGQSQSGTGKT 172 (508)
T ss_dssp CCCEEEECCSSTTSH
T ss_pred CCCEEEECCCCccHH
Confidence 388899999999998
No 309
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=65.76 E-value=1.6 Score=33.00 Aligned_cols=21 Identities=10% Similarity=-0.186 Sum_probs=16.8
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.+.++.+.|++|||||-+..+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 466888999999999866543
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=65.76 E-value=1.4 Score=27.71 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=10.6
Q ss_pred EEecCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPP 86 (101)
Q Consensus 74 ll~~G~p~~g~~~ 86 (101)
+++.|++|+||+-
T Consensus 9 i~v~G~~~~GKSs 21 (170)
T 1z0j_A 9 VCLLGDTGVGKSS 21 (170)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 5688999999753
No 311
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=65.72 E-value=1.4 Score=27.49 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 6 ~i~v~G~~~~GKss 19 (168)
T 1u8z_A 6 KVIMVGSGGVGKSA 19 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35688999999764
No 312
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=65.56 E-value=2.7 Score=31.78 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=14.9
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
+.++++.|++|+|||-..
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 678888899999998543
No 313
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.49 E-value=1.4 Score=29.63 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=12.8
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++.|++|+|||-+
T Consensus 13 ~~i~~~G~~g~GKTsl 28 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL 28 (218)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999998743
No 314
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.45 E-value=1.7 Score=41.34 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=18.5
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-.|++++++||||||||-+.
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLa 400 (1706)
T 3cmw_A 379 GLPMGRIVEIYGPESSGKTTLT 400 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHH
Confidence 4557899999999999998664
No 315
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=65.16 E-value=1.4 Score=36.31 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.++-+|+.+|||||||
T Consensus 38 ~~~~~lv~apTGsGKT 53 (720)
T 2zj8_A 38 EGKNALISIPTASGKT 53 (720)
T ss_dssp GTCEEEEECCGGGCHH
T ss_pred CCCcEEEEcCCccHHH
Confidence 4778999999999998
No 316
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=65.14 E-value=1.5 Score=33.35 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.5
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+..|||+|||
T Consensus 21 ~~~~~l~~~~tGsGKT 36 (556)
T 4a2p_A 21 NGKNALICAPTGSGKT 36 (556)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred cCCCEEEEcCCCChHH
Confidence 3566889999999998
No 317
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=65.05 E-value=1.3 Score=31.74 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=12.9
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
++..|+.+|||+|||=-
T Consensus 128 ~~~~ll~~~tGsGKT~~ 144 (282)
T 1rif_A 128 NRRRILNLPTSAGRSLI 144 (282)
T ss_dssp HSEEEECCCTTSCHHHH
T ss_pred cCCeEEEcCCCCCcHHH
Confidence 34456799999999843
No 318
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=64.88 E-value=1.5 Score=27.83 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|+|++||+-
T Consensus 11 ~i~v~G~~~~GKss 24 (181)
T 3tw8_B 11 KLLIIGDSGVGKSS 24 (181)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999854
No 319
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=64.79 E-value=1.9 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 26 i~~Ge~~~llGpsGsGKS 43 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKS 43 (381)
T ss_dssp ECTTCEEEEECCTTSSHH
T ss_pred ECCCCEEEEEcCCCchHH
Confidence 335889999999999986
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=64.57 E-value=1.8 Score=30.49 Aligned_cols=20 Identities=5% Similarity=-0.145 Sum_probs=15.5
Q ss_pred ceEEecCCCCCCCCCCceee
Q psy2779 72 GRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~~~ 91 (101)
.++++.|++|||||-+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 57889999999998665443
No 321
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=64.53 E-value=1.7 Score=34.24 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++.+.||+|||||-.
T Consensus 156 ~g~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS 173 (359)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCChHHHH
Confidence 588999999999999743
No 322
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=64.23 E-value=1.9 Score=32.95 Aligned_cols=16 Identities=19% Similarity=-0.062 Sum_probs=12.9
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
++.+|+.+|||+|||=
T Consensus 108 ~~~~ll~~~TGsGKT~ 123 (472)
T 2fwr_A 108 DKRGCIVLPTGSGKTH 123 (472)
T ss_dssp TTEEEEECCTTSCHHH
T ss_pred cCCEEEEeCCCCCHHH
Confidence 3457899999999983
No 323
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=64.10 E-value=1.6 Score=28.59 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=13.3
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
...+++.|++|+|||-+
T Consensus 48 ~~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34678999999998743
No 324
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=63.87 E-value=1.7 Score=34.84 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.7
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
|+-+|+.+|||+|||=
T Consensus 22 g~~~ll~~~TGsGKTl 37 (699)
T 4gl2_A 22 GKNIIICLPTGCGKTR 37 (699)
T ss_dssp SCCEEECCCTTSCHHH
T ss_pred CCCEEEEcCCCCcHHH
Confidence 5668899999999983
No 325
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=63.87 E-value=1.7 Score=27.50 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 8 ~i~v~G~~~~GKss 21 (170)
T 1z08_A 8 KVVLLGEGCVGKTS 21 (170)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECcCCCCHHH
Confidence 35688999999864
No 326
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=63.83 E-value=1.8 Score=33.80 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.++-+|+.+|||||||
T Consensus 110 ~~~~~lv~apTGsGKT 125 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKT 125 (563)
T ss_dssp SSEEEEEECCTTSCHH
T ss_pred CCCeEEEECCCCCCcc
Confidence 4788999999999998
No 327
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=63.82 E-value=1.9 Score=32.17 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.4
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..- |.++.+.||+|||||-.
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHH
T ss_pred EEC-CEEEEEECCCCCCHHHH
Confidence 455 88899999999999743
No 328
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=63.73 E-value=1.9 Score=34.04 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 26 i~~Ge~~~llGpnGsGKS 43 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKS 43 (362)
T ss_dssp ECTTCEEEEECCTTSSHH
T ss_pred ECCCCEEEEECCCCchHH
Confidence 346889999999999986
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=63.55 E-value=1.6 Score=27.99 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=10.8
Q ss_pred eEEecCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKP 85 (101)
Q Consensus 73 ~ll~~G~p~~g~~ 85 (101)
.+++.|++|+||+
T Consensus 13 ki~v~G~~~~GKS 25 (195)
T 3bc1_A 13 KFLALGDSGVGKT 25 (195)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4678899999986
No 330
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=63.40 E-value=1.8 Score=34.01 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=25.5
Q ss_pred cCcccchHHHHhhcceeeecccceeeeeccccccccceEEecCCCCCCCCCC
Q psy2779 36 AAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 36 a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~~ll~~G~p~~g~~~~ 87 (101)
...|||.+..-+.. .++ .... .-..+++++.|++|+|||-.
T Consensus 123 ~~~~vGR~~~l~~L---~~~-------L~~~-~~~~~~v~I~G~~GiGKTtL 163 (591)
T 1z6t_A 123 PVVFVTRKKLVNAI---QQK-------LSKL-KGEPGWVTIHGMAGCGKSVL 163 (591)
T ss_dssp CSSCCCCHHHHHHH---HHH-------HTTS-TTSCEEEEEECCTTSSHHHH
T ss_pred CCeecccHHHHHHH---HHH-------Hhcc-cCCCceEEEEcCCCCCHHHH
Confidence 46789987655542 222 1100 11367899999999999843
No 331
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=63.37 E-value=1.7 Score=27.72 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=12.7
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
...+++.|++|+||+-
T Consensus 8 ~~~i~v~G~~~~GKss 23 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTT 23 (178)
T ss_dssp CCEEEEESCTTTTHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 3457789999999864
No 332
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.30 E-value=3.4 Score=34.97 Aligned_cols=17 Identities=12% Similarity=-0.038 Sum_probs=15.6
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+-+|+.+|||||||=
T Consensus 240 ~g~dvlv~apTGSGKTl 256 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTR 256 (673)
T ss_dssp TTCEEEECCCTTTTTTT
T ss_pred cCCeEEEEeCCCCCHHH
Confidence 68899999999999985
No 333
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=63.05 E-value=1.9 Score=33.94 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 26 i~~Ge~~~llGpnGsGKS 43 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKT 43 (359)
T ss_dssp ECTTCEEEEECSTTSSHH
T ss_pred EcCCCEEEEEcCCCchHH
Confidence 336889999999999986
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=62.74 E-value=2 Score=33.91 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=15.2
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+-||+|||||-
T Consensus 39 ~~Ge~~~llGpnGsGKST 56 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTT 56 (355)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCcHHH
Confidence 358899999999999863
No 335
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.65 E-value=2 Score=30.63 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=16.1
Q ss_pred ceEEecCCCCCCCCCCceeee
Q psy2779 72 GRAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~~~~~ 92 (101)
.++.+.|++|||||-.+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 467899999999987665443
No 336
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=62.62 E-value=1.7 Score=27.45 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=11.9
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
-.+++.|++|+||+-
T Consensus 8 ~~i~v~G~~~~GKss 22 (171)
T 1upt_A 8 MRILILGLDGAGKTT 22 (171)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 347789999999864
No 337
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=62.57 E-value=1.8 Score=27.68 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=11.4
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|+|++||+-
T Consensus 8 ki~v~G~~~~GKss 21 (178)
T 2hxs_A 8 KIVVLGDGASGKTS 21 (178)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 36788999999864
No 338
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=62.56 E-value=1.7 Score=27.21 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=11.5
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++|+||+-+
T Consensus 8 ~i~v~G~~~~GKssl 22 (170)
T 1r2q_A 8 KLVLLGESAVGKSSL 22 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999997643
No 339
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=62.54 E-value=2.2 Score=32.71 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=16.3
Q ss_pred cceEEecCCCCCCCCCCceee
Q psy2779 71 GGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~~~ 91 (101)
+..+.+.|+||+||+-+...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L 94 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYF 94 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHH
Confidence 668889999999997554433
No 340
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=62.52 E-value=1.9 Score=30.87 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=14.5
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|++.++.|++|+|||
T Consensus 7 ~g~i~v~~G~mgsGKT 22 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKS 22 (191)
T ss_dssp CCEEEEEECSTTSSHH
T ss_pred CCEEEEEECCCCCcHH
Confidence 4789999999999996
No 341
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=62.39 E-value=1.9 Score=33.00 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=15.6
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.++++++.|++|+|||-..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp SCEEEEEESSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4788999999999998543
No 342
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.06 E-value=3.1 Score=33.35 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=13.9
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
.+++++.|+||+|||-.
T Consensus 99 ~~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTT 115 (432)
T ss_dssp CCCEEEECCSSSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35788899999999854
No 343
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=62.05 E-value=1.8 Score=28.97 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++-|++|+|||-
T Consensus 7 kv~lvG~~g~GKST 20 (199)
T 2f9l_A 7 KVVLIGDSGVGKSN 20 (199)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 35688999999753
No 344
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=61.89 E-value=1.7 Score=35.94 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.8
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.-++.++.|+||||||
T Consensus 160 ~~~v~~I~G~aGsGKT 175 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKT 175 (446)
T ss_dssp CSEEEEEEECTTSCHH
T ss_pred cccEEEEEcCCCCCHH
Confidence 4568899999999986
No 345
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=61.81 E-value=1.7 Score=29.42 Aligned_cols=17 Identities=12% Similarity=-0.195 Sum_probs=13.6
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
..+++.|++|+|||-+.
T Consensus 31 ~~i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLI 47 (221)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 46778899999998643
No 346
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=61.44 E-value=2.2 Score=33.78 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 34 i~~Ge~~~llGpnGsGKS 51 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKT 51 (372)
T ss_dssp ECTTCEEEEECCTTSSHH
T ss_pred ECCCCEEEEECCCCChHH
Confidence 346889999999999986
No 347
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=61.43 E-value=2.2 Score=33.69 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 26 i~~Ge~~~llGpnGsGKS 43 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKT 43 (372)
T ss_dssp EETTCEEEEECSTTSSHH
T ss_pred EcCCCEEEEECCCCcHHH
Confidence 346889999999999986
No 348
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=61.21 E-value=1.9 Score=32.68 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=16.7
Q ss_pred cccccceEEecCCCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~ 87 (101)
..-.|.++.+.||+||||+-.
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH
Confidence 334688999999999998643
No 349
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=60.93 E-value=2 Score=27.55 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 9 ki~v~G~~~~GKSs 22 (208)
T 3clv_A 9 KTVLLGESSVGKSS 22 (208)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999853
No 350
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=60.78 E-value=0.91 Score=37.21 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=14.4
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.++-+|+.+|||||||
T Consensus 39 ~~~~~lv~apTGsGKT 54 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKT 54 (702)
T ss_dssp TCSCEEEECSSHHHHH
T ss_pred CCCcEEEEcCCccHHH
Confidence 4778999999999998
No 351
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=60.53 E-value=1.8 Score=33.42 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=14.1
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.++-.|+.+|||+|||=
T Consensus 127 ~~~~~ll~~~tGsGKT~ 143 (510)
T 2oca_A 127 VNRRRILNLPTSAGRSL 143 (510)
T ss_dssp HHSEEEEECCSTTTHHH
T ss_pred hcCCcEEEeCCCCCHHH
Confidence 45678899999999984
No 352
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=60.43 E-value=2.2 Score=34.04 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=17.4
Q ss_pred ccccceEEecCCCCCCCCCCce
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~~ 89 (101)
.-.|..+.+-||+|||||-.-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHH
Confidence 3468899999999999975433
No 353
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=60.40 E-value=2 Score=27.26 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=11.2
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++++||+-
T Consensus 17 ~i~v~G~~~~GKSs 30 (179)
T 1z0f_A 17 KYIIIGDMGVGKSC 30 (179)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999863
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=60.37 E-value=2.2 Score=33.19 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=13.8
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
.++.+.||+||||+-+.
T Consensus 93 ~iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 37889999999997543
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=60.24 E-value=2.1 Score=27.54 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 6 ki~v~G~~~~GKSs 19 (189)
T 4dsu_A 6 KLVVVGADGVGKSA 19 (189)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999753
No 356
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=60.18 E-value=2.1 Score=27.38 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++++||+-
T Consensus 14 ki~v~G~~~~GKSs 27 (181)
T 2efe_B 14 KLVLLGDVGAGKSS 27 (181)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECcCCCCHHH
Confidence 46788999999864
No 357
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=59.91 E-value=2 Score=27.39 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 20 ki~v~G~~~~GKSs 33 (187)
T 2a9k_A 20 KVIMVGSGGVGKSA 33 (187)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999863
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=59.85 E-value=1.7 Score=27.56 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 16 ~i~v~G~~~~GKss 29 (179)
T 2y8e_A 16 KLVFLGEQSVGKTS 29 (179)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46677999999853
No 359
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=59.40 E-value=1.6 Score=28.20 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.1
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
..+++.|++|+|||-
T Consensus 24 ~~i~v~G~~~~GKSs 38 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSS 38 (195)
T ss_dssp CEEEEEEBTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 357789999999864
No 360
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=59.25 E-value=2.7 Score=27.48 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=3.6
Q ss_pred eEEecCCCCCCCCCCceeee
Q psy2779 73 RAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~~~~~ 92 (101)
-+++.|++|+||+-+.....
T Consensus 22 ~i~v~G~~~~GKssli~~l~ 41 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFT 41 (208)
T ss_dssp EEEEC---------------
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999987655443
No 361
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=58.76 E-value=5 Score=26.65 Aligned_cols=20 Identities=10% Similarity=-0.076 Sum_probs=15.0
Q ss_pred eEEecCCCCCCCCCCceeee
Q psy2779 73 RAVAGGRTKCPKPPNTSMII 92 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~~~~~ 92 (101)
.+++.|++++||+-+...++
T Consensus 35 ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSB
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35688999999987755443
No 362
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=58.73 E-value=1.7 Score=34.10 Aligned_cols=18 Identities=28% Similarity=0.130 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 23 i~~Ge~~~llGpnGsGKS 40 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKT 40 (348)
T ss_dssp ECTTCEEEEECCCTHHHH
T ss_pred EcCCCEEEEECCCCccHH
Confidence 346889999999999986
No 363
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=58.65 E-value=2.2 Score=27.31 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=11.9
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++|+||+-+
T Consensus 7 ~i~~~G~~~~GKssl 21 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCL 21 (186)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999998754
No 364
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=58.43 E-value=2.3 Score=34.03 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=14.2
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+-+|+.+|||+|||=
T Consensus 27 ~g~~~iv~~~TGsGKTl 43 (696)
T 2ykg_A 27 KGKNTIICAPTGCGKTF 43 (696)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred cCCCEEEEcCCCchHHH
Confidence 36678899999999983
No 365
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=58.43 E-value=2.3 Score=30.76 Aligned_cols=14 Identities=14% Similarity=-0.175 Sum_probs=11.9
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+|++.|||+|||=
T Consensus 25 ~~ll~~~tG~GKT~ 38 (494)
T 1wp9_A 25 NCLIVLPTGLGKTL 38 (494)
T ss_dssp CEEEECCTTSCHHH
T ss_pred CEEEEcCCCCCHHH
Confidence 56789999999983
No 366
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=58.40 E-value=2.5 Score=34.60 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=15.3
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
..++++.|+||+|||-.+
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 689999999999998543
No 367
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=58.23 E-value=2.3 Score=27.43 Aligned_cols=15 Identities=27% Similarity=0.164 Sum_probs=11.9
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
-+++-|+|++|||-+
T Consensus 16 ki~vvG~~~~GKssL 30 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTN 30 (198)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999998644
No 368
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=58.22 E-value=2.8 Score=40.71 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=18.7
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.+-.|.+++++||||+|||-+.
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLa 400 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLT 400 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHH
Confidence 4667899999999999998664
No 369
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=58.21 E-value=2.1 Score=28.69 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=10.6
Q ss_pred eEEecCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKP 85 (101)
Q Consensus 73 ~ll~~G~p~~g~~ 85 (101)
.+++-|++|+|||
T Consensus 31 kv~lvG~~g~GKS 43 (191)
T 1oix_A 31 KVVLIGDSGVGKS 43 (191)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3568899999975
No 370
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=57.75 E-value=2.3 Score=27.14 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 12 ~i~v~G~~~~GKss 25 (180)
T 2g6b_A 12 KVMLVGDSGVGKTC 25 (180)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 36788999999863
No 371
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=57.70 E-value=2.4 Score=27.41 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 20 ki~v~G~~~~GKSs 33 (183)
T 3kkq_A 20 KLVVVGDGGVGKSA 33 (183)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999863
No 372
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=57.43 E-value=4.2 Score=33.52 Aligned_cols=45 Identities=7% Similarity=0.163 Sum_probs=33.0
Q ss_pred eccccccccccCCCCCCcccc---cCcccchHHHHhhcceeeecccceeeee
Q psy2779 15 ISSHSHVKGLGLKENGEANEM---AAGLVGQQAAREVSRAVTWEKSFQFERC 63 (101)
Q Consensus 15 IaaHSHIkGLGLde~g~a~~~---a~GlVGQ~~AREAaGIVVdm~~~~~~~~ 63 (101)
.+...--+||.||...+-.+. ++-++-.-..||+.||+|.- -+|+
T Consensus 294 l~~n~~krglALdG~lk~edtnLASsT~~~~~~~ke~~GI~VsY----~VkV 341 (380)
T 3ugu_A 294 LANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSY----QIKV 341 (380)
T ss_dssp GGGCSCCTTSCBSSCTTCTTCCBCCCCCCCTTCCGGGGSEEEEE----EEEE
T ss_pred cccCCceeeEEecceeccCCCcccceeEecCCCCCcceEEEEEE----EEEE
Confidence 455567789999966554443 55577777899999999988 3556
No 373
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=57.14 E-value=2.4 Score=27.55 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=11.4
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++++||+-
T Consensus 18 ki~v~G~~~~GKSs 31 (196)
T 3tkl_A 18 KLLLIGDSGVGKSC 31 (196)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 46789999999853
No 374
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=57.07 E-value=1.9 Score=28.20 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=13.1
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
-..+++.|++|+||+-+
T Consensus 23 ~~~i~v~G~~~~GKSsl 39 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSF 39 (195)
T ss_dssp CCEEEEEEBTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35677899999998643
No 375
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=57.04 E-value=2.9 Score=32.36 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+.+.++.||+|||||-
T Consensus 25 ~~~~~~i~G~nG~GKst 41 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSN 41 (430)
T ss_dssp TCSEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47899999999999874
No 376
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=57.00 E-value=5 Score=32.71 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=16.3
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|..+.+.||+||||+-.
T Consensus 367 i~~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34688899999999999743
No 377
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=56.98 E-value=2.5 Score=27.49 Aligned_cols=16 Identities=19% Similarity=0.013 Sum_probs=12.5
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
-.+++.|+|++|||-+
T Consensus 19 ~~i~v~G~~~~GKssl 34 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTI 34 (186)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577889999998643
No 378
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=56.96 E-value=2.5 Score=27.44 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=12.5
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++-|++|+||+-+
T Consensus 8 ~~i~lvG~~gvGKStL 23 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTI 23 (188)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3577899999998643
No 379
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=56.86 E-value=2.5 Score=27.39 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++++||+-
T Consensus 17 ~i~v~G~~~~GKss 30 (195)
T 1x3s_A 17 KILIIGESGVGKSS 30 (195)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999863
No 380
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=56.63 E-value=2.1 Score=27.62 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=11.2
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++|+||+-
T Consensus 12 ki~v~G~~~~GKSs 25 (186)
T 2bme_A 12 KFLVIGNAGTGKSC 25 (186)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999863
No 381
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=56.63 E-value=1.7 Score=28.01 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=13.2
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
.-.+++.|++|+|||-+
T Consensus 18 ~~~i~v~G~~~~GKssl 34 (183)
T 1moz_A 18 ELRILILGLDGAGKTTI 34 (183)
T ss_dssp CEEEEEEEETTSSHHHH
T ss_pred ccEEEEECCCCCCHHHH
Confidence 34577899999999744
No 382
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=56.59 E-value=2.2 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=11.4
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 11 ~i~v~G~~~~GKss 24 (181)
T 2fn4_A 11 KLVVVGGGGVGKSA 24 (181)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999864
No 383
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=56.56 E-value=4 Score=30.93 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=15.8
Q ss_pred ccceEEecCCCCCCCCCCceee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSMI 91 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~~ 91 (101)
...-+++.|+||+||+=+..++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHH
Confidence 3556779999999998554433
No 384
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=56.43 E-value=2.5 Score=27.02 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++|+||+-
T Consensus 10 ki~v~G~~~~GKss 23 (182)
T 3bwd_D 10 KCVTVGDGAVGKTC 23 (182)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36688999999864
No 385
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=56.39 E-value=2.6 Score=27.66 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=10.7
Q ss_pred eEEecCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKP 85 (101)
Q Consensus 73 ~ll~~G~p~~g~~ 85 (101)
-+++.|++|+||+
T Consensus 27 ki~v~G~~~~GKS 39 (193)
T 2oil_A 27 KVVLIGESGVGKT 39 (193)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3678899999985
No 386
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.38 E-value=2.2 Score=42.97 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=14.9
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..++-+|+.||||||||
T Consensus 1302 ~~~~pvLL~GptGtGKT 1318 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKT 1318 (3245)
T ss_dssp HTTCCCEEESSTTSSHH
T ss_pred HCCCcEEEECCCCCCHH
Confidence 35788999999999998
No 387
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=56.37 E-value=2.9 Score=33.29 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=14.3
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||+|||
T Consensus 59 ~~~dvlv~apTGsGKT 74 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKT 74 (579)
T ss_dssp SSEEEEEECCTTSCHH
T ss_pred CCCeEEEEcCCCcHHH
Confidence 4778899999999998
No 388
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=55.93 E-value=2.9 Score=30.75 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=15.8
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.|..+++.|++||||+-..
T Consensus 20 ~~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5888999999999997443
No 389
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=55.84 E-value=2.4 Score=27.93 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=11.8
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
+-.+++.|+||+||+
T Consensus 4 ~~ki~ivG~~g~GKS 18 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKS 18 (172)
T ss_dssp CEEEEEEESTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 345778999999965
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=55.70 E-value=2.3 Score=28.78 Aligned_cols=16 Identities=13% Similarity=-0.290 Sum_probs=12.3
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++.|.+|+|||-+
T Consensus 39 ~~i~ivG~~gvGKTtl 54 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLL 54 (226)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4566779999999754
No 391
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=55.59 E-value=6 Score=34.00 Aligned_cols=17 Identities=18% Similarity=-0.195 Sum_probs=15.2
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..++.+|+.+|||||||
T Consensus 230 ~~~~~vlv~ApTGSGKT 246 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKS 246 (666)
T ss_dssp SSCEEEEEECCTTSCTT
T ss_pred HcCCeEEEEeCCchhHH
Confidence 36788999999999998
No 392
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=55.46 E-value=2.7 Score=29.59 Aligned_cols=16 Identities=6% Similarity=-0.261 Sum_probs=13.5
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
..++.+.|++||||+.
T Consensus 6 ~~iI~i~g~~GsGk~t 21 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHL 21 (201)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CeEEEEeCCCCCCHHH
Confidence 4588999999999864
No 393
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=55.42 E-value=1.1 Score=37.98 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=25.7
Q ss_pred cccCcccchHHHHhhcceeeecccceeeeeccccccccc-eEEecCCCCCCCC
Q psy2779 34 EMAAGLVGQQAAREVSRAVTWEKSFQFERCKSHSLFRGG-RAVAGGRTKCPKP 85 (101)
Q Consensus 34 ~~a~GlVGQ~~AREAaGIVVdm~~~~~~~~~~~~~~~g~-~ll~~G~p~~g~~ 85 (101)
..+. ++||+.+++|+-+. + +.-|.+++|. -+|+.|+||| |+
T Consensus 211 sIap-I~G~e~vK~aLll~--L-------~GG~~k~rgdihVLL~G~PGt-KS 252 (506)
T 3f8t_A 211 AIAP-LPGAEEVGKMLALQ--L-------FSCVGKNSERLHVLLAGYPVV-CS 252 (506)
T ss_dssp HHCC-STTCHHHHHHHHHH--H-------TTCCSSGGGCCCEEEESCHHH-HH
T ss_pred Hhcc-cCCCHHHHHHHHHH--H-------cCCccccCCceeEEEECCCCh-HH
Confidence 4556 99999998886442 2 2111111111 5889999999 96
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=55.36 E-value=2.7 Score=27.78 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=11.2
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 10 ki~v~G~~~~GKSs 23 (203)
T 1zbd_A 10 KILIIGNSSVGKTS 23 (203)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999863
No 395
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=55.01 E-value=2.8 Score=27.50 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=11.7
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
-+++.|++|+|||-+
T Consensus 16 ki~v~G~~~~GKSsl 30 (206)
T 2bov_A 16 KVIMVGSGGVGKSAL 30 (206)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999998643
No 396
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=54.99 E-value=3 Score=30.47 Aligned_cols=14 Identities=29% Similarity=0.150 Sum_probs=12.1
Q ss_pred ceEEecCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKP 85 (101)
Q Consensus 72 ~~ll~~G~p~~g~~ 85 (101)
.++.+-||+|||||
T Consensus 25 e~~~liG~nGsGKS 38 (240)
T 2onk_A 25 DYCVLLGPTGAGKS 38 (240)
T ss_dssp SEEEEECCTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 57789999999985
No 397
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.96 E-value=3.3 Score=30.89 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+.+|+.|++|+||.
T Consensus 15 ~G~gvli~G~SGaGKS 30 (181)
T 3tqf_A 15 DKMGVLITGEANIGKS 30 (181)
T ss_dssp TTEEEEEEESSSSSHH
T ss_pred CCEEEEEEcCCCCCHH
Confidence 5889999999999997
No 398
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=54.82 E-value=3.3 Score=30.83 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.7
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..|.++.+-||+||||+
T Consensus 167 l~geiv~l~G~sG~GKS 183 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKS 183 (301)
T ss_dssp HSSSEEEEECSTTSSHH
T ss_pred hcCCeEEEECCCCCcHH
Confidence 46889999999999975
No 399
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=54.81 E-value=3.1 Score=33.46 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=12.0
Q ss_pred EEecCCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPPN 87 (101)
Q Consensus 74 ll~~G~p~~g~~~~ 87 (101)
+++.|+||||||-.
T Consensus 27 i~l~G~~G~GKTTl 40 (359)
T 2ga8_A 27 VILVGSPGSGKSTI 40 (359)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 88999999999743
No 400
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.73 E-value=3.3 Score=31.06 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=15.3
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.+.++.+.|++|+|||-..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5778888899999998543
No 401
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=54.69 E-value=2.9 Score=27.41 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=11.4
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++|+||+-
T Consensus 22 ki~v~G~~~~GKSs 35 (189)
T 1z06_A 22 KIIVIGDSNVGKTC 35 (189)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999863
No 402
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=54.51 E-value=3.1 Score=34.90 Aligned_cols=17 Identities=12% Similarity=-0.126 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|.++++.|++|||||-
T Consensus 292 ~GeVI~LVGpNGSGKTT 308 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTT 308 (503)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCeEEEEECCCcccHHH
Confidence 58899999999999974
No 403
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=54.44 E-value=2.9 Score=27.68 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=11.5
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|+|++||+-
T Consensus 22 ~i~v~G~~~~GKSs 35 (213)
T 3cph_A 22 KILLIGDSGVGKSC 35 (213)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999864
No 404
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=54.36 E-value=3 Score=27.16 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=12.5
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++.|++++|||-+
T Consensus 18 ~ki~v~G~~~~GKSsl 33 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTI 33 (199)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4577899999998643
No 405
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=54.24 E-value=2.9 Score=27.24 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+|||-
T Consensus 23 ki~vvG~~~~GKSs 36 (190)
T 3con_A 23 KLVVVGAGGVGKSA 36 (190)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 36688999999864
No 406
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=54.14 E-value=3 Score=27.46 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=11.4
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 10 ki~v~G~~~~GKSs 23 (207)
T 1vg8_A 10 KVIILGDSGVGKTS 23 (207)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 46788999999864
No 407
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=54.12 E-value=3.2 Score=31.54 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=15.0
Q ss_pred cceEEecCCCCCCCCCCce
Q psy2779 71 GGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~~ 89 (101)
..++++.|.||+|||-++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIE 97 (355)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578899999999986543
No 408
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=54.12 E-value=3.3 Score=33.84 Aligned_cols=16 Identities=19% Similarity=-0.114 Sum_probs=13.6
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
..++++.|.|||||+=
T Consensus 35 ~~lIvlvGlpGSGKST 50 (520)
T 2axn_A 35 PTVIVMVGLPARGKTY 50 (520)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999974
No 409
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=54.09 E-value=6 Score=32.42 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|..+.+.||+||||+-
T Consensus 378 i~~G~~~~ivG~sGsGKST 396 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTT 396 (598)
T ss_dssp CCTTCEEEEECCTTSSTTH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3468899999999999973
No 410
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=54.01 E-value=2.4 Score=32.05 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=14.5
Q ss_pred cceEEecCCCCCCCCCCc
Q psy2779 71 GGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~~ 88 (101)
+..+.+.|++||||+-..
T Consensus 170 g~k~~IvG~nGsGKSTLl 187 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLV 187 (365)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred hCeEEEECCCCCCHHHHH
Confidence 677889999999987443
No 411
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=53.94 E-value=2.9 Score=31.65 Aligned_cols=19 Identities=16% Similarity=-0.039 Sum_probs=15.2
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.+.++.+.|+||+||+-+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~ 73 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFL 73 (341)
T ss_dssp CSEEEEEEECTTSCHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4677888999999997543
No 412
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=53.92 E-value=3.9 Score=33.42 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=15.5
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
-.|.++.+.||+||||+-
T Consensus 310 ~~Ge~~~i~G~NGsGKST 327 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTT 327 (538)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 468899999999999863
No 413
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=53.82 E-value=3 Score=27.35 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 24 ki~vvG~~~~GKSs 37 (189)
T 2gf9_A 24 KLLLIGNSSVGKTS 37 (189)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35688999999864
No 414
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=53.72 E-value=3.2 Score=33.00 Aligned_cols=16 Identities=19% Similarity=0.007 Sum_probs=12.7
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
.+.+|+.++||+|||=
T Consensus 198 ~~~~ll~~~TGsGKT~ 213 (590)
T 3h1t_A 198 KKRSLITMATGTGKTV 213 (590)
T ss_dssp CSEEEEEECTTSCHHH
T ss_pred CCceEEEecCCCChHH
Confidence 3556788999999983
No 415
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=53.45 E-value=3.6 Score=30.75 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=16.3
Q ss_pred cccceEEecCCCCCCCCCCc
Q psy2779 69 FRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~~~ 88 (101)
..|.++.+.||+|+||+-.-
T Consensus 163 l~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHH
Confidence 46889999999999996443
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=53.15 E-value=3.1 Score=27.67 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=12.2
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
--+++.|++|+||+-+
T Consensus 29 ~ki~v~G~~~~GKSsl 44 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSF 44 (199)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 3467889999998643
No 417
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=52.99 E-value=3.2 Score=27.37 Aligned_cols=14 Identities=21% Similarity=-0.017 Sum_probs=11.1
Q ss_pred EEecCCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPPN 87 (101)
Q Consensus 74 ll~~G~p~~g~~~~ 87 (101)
+++.|++|+||+-+
T Consensus 24 i~v~G~~~~GKSsl 37 (191)
T 2a5j_A 24 YIIIGDTGVGKSCL 37 (191)
T ss_dssp EEEESSTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 56889999998643
No 418
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=52.78 E-value=2.7 Score=27.11 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=11.7
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++|+||+-+
T Consensus 8 ki~~~G~~~~GKSsl 22 (181)
T 3t5g_A 8 KIAILGYRSVGKSSL 22 (181)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 467889999998643
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=52.54 E-value=3.2 Score=27.36 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 24 ki~v~G~~~~GKSs 37 (188)
T 1zd9_A 24 ELTLVGLQYSGKTT 37 (188)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999864
No 420
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=52.50 E-value=1.6 Score=32.85 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=15.9
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
..-.| +.++.||+||||+-.-
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHHH
Confidence 33346 8999999999997543
No 421
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=52.42 E-value=3.9 Score=33.38 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=12.2
Q ss_pred cceEEecCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKP 85 (101)
Q Consensus 71 g~~ll~~G~p~~g~~ 85 (101)
.+.+|+.|.||||||
T Consensus 15 ~~~~lV~AgaGSGKT 29 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKT 29 (673)
T ss_dssp SSEEEECCCTTSCHH
T ss_pred CCCEEEEeCCCCChH
Confidence 456678899999997
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=52.25 E-value=3.3 Score=27.36 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=11.4
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++|+|||-
T Consensus 30 ki~v~G~~~vGKSs 43 (196)
T 2atv_A 30 KLAIFGRAGVGKSA 43 (196)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999864
No 423
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=52.10 E-value=3.4 Score=27.48 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=11.8
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
-+++.|++|+||+-+
T Consensus 22 ki~ivG~~~vGKSsL 36 (184)
T 3ihw_A 22 KVGIVGNLSSGKSAL 36 (184)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999998743
No 424
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=51.95 E-value=1.7 Score=33.97 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.2
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|.++.+-||+|||||
T Consensus 28 i~~Ge~~~llGpnGsGKS 45 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKT 45 (353)
T ss_dssp ECTTCEEEEECSCHHHHH
T ss_pred ECCCCEEEEECCCCCcHH
Confidence 346889999999999986
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=51.91 E-value=4 Score=30.57 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=13.3
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
.++++.|+.|||||-+
T Consensus 5 ~v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEEESSSSSCHHH
T ss_pred cEEEEEecCCCCHHHH
Confidence 4688999999999754
No 426
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=51.68 E-value=4.2 Score=33.56 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=17.3
Q ss_pred ccccceEEecCCCCCCCCCCc
Q psy2779 68 LFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~~ 88 (101)
.-.|.++.+.||+||||+-+-
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ecCCCEEEEEeeCCCCHHHHH
Confidence 346889999999999997554
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=51.21 E-value=2.9 Score=27.37 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.5
Q ss_pred EEecCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPP 86 (101)
Q Consensus 74 ll~~G~p~~g~~~ 86 (101)
+++-|++|+|||-
T Consensus 10 i~v~G~~~vGKSs 22 (184)
T 1m7b_A 10 IVVVGDSQCGKTA 22 (184)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5678999999864
No 428
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=51.14 E-value=4.1 Score=33.81 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=15.2
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+-+++-.|||||||-
T Consensus 21 ~~~~~~~~apTGtGKT~ 37 (620)
T 4a15_A 21 KSYGVALESPTGSGKTI 37 (620)
T ss_dssp HSSEEEEECCTTSCHHH
T ss_pred cCCCEEEECCCCCCHHH
Confidence 58899999999999984
No 429
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=51.02 E-value=2.9 Score=27.56 Aligned_cols=16 Identities=19% Similarity=0.030 Sum_probs=12.6
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
-.+++.|++|+|||-+
T Consensus 17 ~ki~ivG~~~vGKSsL 32 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTL 32 (181)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577899999998743
No 430
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=50.92 E-value=3.5 Score=27.17 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=11.6
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
-+++.|++|+|||-+
T Consensus 22 ki~~~G~~~~GKssl 36 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSL 36 (201)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999998643
No 431
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=50.92 E-value=3.5 Score=27.10 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKP 85 (101)
Q Consensus 73 ~ll~~G~p~~g~~ 85 (101)
-+++.|++|+||+
T Consensus 25 ki~~vG~~~~GKS 37 (194)
T 3reg_A 25 KIVVVGDGAVGKT 37 (194)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4678999999985
No 432
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=50.86 E-value=3.6 Score=27.26 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=11.8
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
-+++.|++|+|||-+
T Consensus 23 ki~vvG~~~vGKTsL 37 (187)
T 3c5c_A 23 NLAILGRRGAGKSAL 37 (187)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999998643
No 433
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=50.80 E-value=6.5 Score=32.39 Aligned_cols=16 Identities=19% Similarity=-0.039 Sum_probs=14.1
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+..|||+|||
T Consensus 58 ~g~d~lv~~pTGsGKT 73 (591)
T 2v1x_A 58 AGKEVFLVMPTGGGKS 73 (591)
T ss_dssp TTCCEEEECCTTSCTT
T ss_pred cCCCEEEEECCCChHH
Confidence 4677889999999998
No 434
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=50.74 E-value=3.7 Score=27.51 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=11.2
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 27 ki~vvG~~~~GKSs 40 (217)
T 2f7s_A 27 KLLALGDSGVGKTT 40 (217)
T ss_dssp EEEEESCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 36788999999864
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=50.66 E-value=2.4 Score=32.53 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.4
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|..+.+.||+||||+
T Consensus 77 i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp ECTTCEEEEESSSCHHHH
T ss_pred EcCCCEEEEECCCCchHH
Confidence 346889999999999986
No 436
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=50.62 E-value=3 Score=27.47 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=10.8
Q ss_pred EEecCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPP 86 (101)
Q Consensus 74 ll~~G~p~~g~~~ 86 (101)
+++.|++++||+-
T Consensus 26 i~v~G~~~~GKSs 38 (191)
T 3dz8_A 26 LLIIGNSSVGKTS 38 (191)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCcCHHH
Confidence 5688999999863
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=50.55 E-value=3.6 Score=27.50 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=12.4
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
-.+++.|++|+|||-+
T Consensus 8 ~ki~vvG~~~~GKTsl 23 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLL 23 (214)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3567889999998643
No 438
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=50.50 E-value=3.4 Score=33.43 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.5
Q ss_pred ccceEEecCCCCCCCCCCce
Q psy2779 70 RGGRAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~ 89 (101)
.|.++.+-||+||||+-...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 68889999999999975443
No 439
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=50.41 E-value=3.1 Score=27.51 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=10.2
Q ss_pred EEecCCCCCCCC
Q psy2779 74 AVAGGRTKCPKP 85 (101)
Q Consensus 74 ll~~G~p~~g~~ 85 (101)
+++.|++|+||+
T Consensus 26 i~vvG~~~~GKS 37 (192)
T 2fg5_A 26 VCLLGDTGVGKS 37 (192)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 568899999985
No 440
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=50.31 E-value=4.7 Score=32.12 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=15.9
Q ss_pred cccccceEEecCCCCCCCC
Q psy2779 67 SLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~ 85 (101)
..-.|.++.+-||+||||+
T Consensus 50 ~i~~Gei~~IiGpnGaGKS 68 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKS 68 (366)
T ss_dssp EECTTCEEEEECCTTSSHH
T ss_pred EEcCCCEEEEEcCCCchHH
Confidence 3446889999999999986
No 441
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=50.23 E-value=4.3 Score=34.73 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.+..+++.|.|||||+-
T Consensus 51 ~g~lIvLtGlsGSGKST 67 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTT 67 (630)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCCEEEEEeCCCCCHHH
Confidence 47789999999999963
No 442
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=50.11 E-value=5.4 Score=35.22 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=14.3
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||+|||
T Consensus 53 ~g~~vlv~apTGsGKT 68 (997)
T 4a4z_A 53 QGDSVFVAAHTSAGKT 68 (997)
T ss_dssp TTCEEEEECCTTSCSH
T ss_pred cCCCEEEEECCCCcHH
Confidence 4678999999999998
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=49.94 E-value=5.1 Score=32.59 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|..+.+.||+||||+-
T Consensus 366 i~~G~~~~ivG~sGsGKST 384 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKST 384 (582)
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 444
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=55.47 E-value=3.4 Score=27.49 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=13.9
Q ss_pred eEEecCCCCCCCCCCcee
Q psy2779 73 RAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~~~ 90 (101)
.+++.|+||+||+-+...
T Consensus 32 ki~v~G~~~~GKSsli~~ 49 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLIS 49 (204)
Confidence 467889999999876533
No 445
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=49.82 E-value=3.2 Score=27.76 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=12.2
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++++|||-+
T Consensus 31 ki~v~G~~~vGKSsL 45 (192)
T 2b6h_A 31 RILMVGLDAAGKTTI 45 (192)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999754
No 446
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=49.79 E-value=4.3 Score=31.85 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.7
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
++.++.||+|+|||..
T Consensus 27 g~~~i~G~nG~GKttl 42 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNL 42 (359)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCChhHH
Confidence 3899999999999753
No 447
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=49.76 E-value=3.2 Score=27.71 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=12.0
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++-|+||+|||-+
T Consensus 25 ki~~vG~~~vGKSsl 39 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTL 39 (190)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567889999998643
No 448
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=49.57 E-value=3.2 Score=27.58 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=11.0
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++|+||+-
T Consensus 10 ki~v~G~~~~GKSs 23 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSC 23 (206)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36688999999863
No 449
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=49.55 E-value=2.6 Score=27.07 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=10.7
Q ss_pred EEecCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPP 86 (101)
Q Consensus 74 ll~~G~p~~g~~~ 86 (101)
+++-|++++|||-
T Consensus 10 i~~vG~~~vGKTs 22 (178)
T 2iwr_A 10 LGVLGDARSGKSS 22 (178)
T ss_dssp EEEECCGGGCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5688999999864
No 450
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=49.53 E-value=3.9 Score=27.40 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=12.1
Q ss_pred eEEecCCCCCCCCCCc
Q psy2779 73 RAVAGGRTKCPKPPNT 88 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~ 88 (101)
.+++.|++++||+-+.
T Consensus 13 ki~vvG~~~~GKSsli 28 (218)
T 4djt_A 13 KICLIGDGGVGKTTYI 28 (218)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999987543
No 451
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=49.44 E-value=4.2 Score=32.08 Aligned_cols=16 Identities=19% Similarity=-0.118 Sum_probs=13.3
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
...+++.|.||||||=
T Consensus 39 ~~~IvlvGlpGsGKST 54 (469)
T 1bif_A 39 PTLIVMVGLPARGKTY 54 (469)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred cEEEEEECCCCCCHHH
Confidence 3478899999999973
No 452
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=49.26 E-value=3.3 Score=27.13 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=12.3
Q ss_pred eEEecCCCCCCCCCCc
Q psy2779 73 RAVAGGRTKCPKPPNT 88 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~ 88 (101)
.+++.|++|+||+-+.
T Consensus 23 ki~v~G~~~~GKSsli 38 (190)
T 2h57_A 23 HVLCLGLDNSGKTTII 38 (190)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999987543
No 453
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=49.21 E-value=3.9 Score=27.57 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=11.8
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
-+++-|+||+|||-+
T Consensus 25 ki~vvG~~~vGKSsL 39 (195)
T 3cbq_A 25 KVMLVGESGVGKSTL 39 (195)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999998643
No 454
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=49.07 E-value=3.3 Score=27.08 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=12.9
Q ss_pred ceEEecCCCCCCCCCCc
Q psy2779 72 GRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~~ 88 (101)
-.+++.|++++||+-+.
T Consensus 17 ~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35678899999997543
No 455
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=48.73 E-value=3.8 Score=30.46 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=13.4
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
..+.+.+-|+||+||+-
T Consensus 7 r~~~VaIvG~~nvGKST 23 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKST 23 (301)
T ss_dssp EEEEEEEECSSSSSHHH
T ss_pred cCCEEEEECCCCCCHHH
Confidence 34568899999999864
No 456
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=48.72 E-value=4.7 Score=35.04 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~ 87 (101)
.|.++++.||+|+||+-+
T Consensus 606 ~g~i~~ItGpNGsGKSTl 623 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTY 623 (800)
T ss_dssp SSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCChHHH
Confidence 588999999999999743
No 457
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=48.60 E-value=5.1 Score=33.10 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.8
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++-+-||+||||+-.
T Consensus 41 i~~Ge~~~liGpNGaGKSTL 60 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSL 60 (670)
T ss_dssp EETTSEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 33588999999999999855
No 458
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=48.49 E-value=3.5 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=11.6
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++++||+-+
T Consensus 10 ki~vvG~~~~GKSsl 24 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSL 24 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467889999998643
No 459
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=48.10 E-value=4.1 Score=26.99 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=11.6
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
-+++.|++|+||+-+
T Consensus 28 ki~vvG~~~~GKSsL 42 (192)
T 2il1_A 28 QVIIIGSRGVGKTSL 42 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366889999998643
No 460
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=48.05 E-value=4.8 Score=32.75 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=15.8
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|..+.+.||+||||+-
T Consensus 364 i~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKST 382 (578)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCChHHH
Confidence 3468899999999999863
No 461
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=47.85 E-value=4.3 Score=29.52 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=12.0
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|.|+||||-+
T Consensus 7 kI~lvG~~nvGKTsL 21 (258)
T 3a1s_A 7 KVALAGCPNVGKTSL 21 (258)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999998754
No 462
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=47.61 E-value=4.1 Score=30.06 Aligned_cols=16 Identities=31% Similarity=0.206 Sum_probs=14.8
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|.+.++.|+.|+|||
T Consensus 19 ~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKS 34 (195)
T ss_dssp CCEEEEEEECTTSCHH
T ss_pred ceEEEEEECCCCCcHH
Confidence 4889999999999998
No 463
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=47.59 E-value=4.9 Score=34.84 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=15.1
Q ss_pred cceEEecCCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~~ 87 (101)
|.++++.||+|+||+-+
T Consensus 576 g~i~~I~GpNGsGKSTl 592 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTF 592 (765)
T ss_dssp SCEEEEESCSSSSHHHH
T ss_pred CcEEEEECCCCCChHHH
Confidence 88999999999999743
No 464
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=47.58 E-value=6.4 Score=32.07 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=15.7
Q ss_pred ccccce--EEecCCCCCCCCCCc
Q psy2779 68 LFRGGR--AVAGGRTKCPKPPNT 88 (101)
Q Consensus 68 ~~~g~~--ll~~G~p~~g~~~~~ 88 (101)
.-.|.+ +.+.||+||||+-+-
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLl 59 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLM 59 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHH
Confidence 335788 889999999997543
No 465
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=47.50 E-value=4.8 Score=27.93 Aligned_cols=19 Identities=21% Similarity=-0.013 Sum_probs=15.1
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
...++++.|.+|+|||-.+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~ 31 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLT 31 (262)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHH
Confidence 3567889999999998543
No 466
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=47.48 E-value=4.4 Score=31.40 Aligned_cols=20 Identities=15% Similarity=-0.162 Sum_probs=16.1
Q ss_pred ccccceEEecCCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPPN 87 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~~ 87 (101)
.-.|.++.+-||+|||||-.
T Consensus 68 i~~Gq~~gIiG~nGaGKTTL 87 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTL 87 (347)
T ss_dssp EETTCEEEEEECTTSSHHHH
T ss_pred ecCCCEEEEECCCCCCHHHH
Confidence 33588899999999998743
No 467
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=47.42 E-value=3.6 Score=27.55 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 27 ki~v~G~~~~GKSs 40 (200)
T 2o52_A 27 KFLVIGSAGTGKSC 40 (200)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 35688999999863
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=47.42 E-value=5.5 Score=32.56 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=15.4
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
...|.++.+.||+||||+
T Consensus 44 i~~Ge~~~LvG~NGaGKS 61 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKS 61 (538)
T ss_dssp CCTTSEEEEECCTTSSHH
T ss_pred CCCCCEEEEECCCCCCHH
Confidence 346889999999999985
No 469
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=47.36 E-value=4.3 Score=27.84 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.2
Q ss_pred ceEEecCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPP 86 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~ 86 (101)
..+++.|++|+||+-
T Consensus 30 ~kI~vvG~~~vGKSs 44 (228)
T 2qu8_A 30 KTIILSGAPNVGKSS 44 (228)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 457789999999864
No 470
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=47.14 E-value=3 Score=28.12 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=11.8
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++-|+||+|||-.
T Consensus 27 ki~lvG~~~vGKSsL 41 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTL 41 (198)
T ss_dssp EEEEEEETTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999998643
No 471
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=46.87 E-value=4.5 Score=28.11 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=12.3
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++.|+||+||+-+
T Consensus 30 ~~i~lvG~~g~GKStl 45 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSAT 45 (239)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567899999998643
No 472
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=46.84 E-value=4.4 Score=27.20 Aligned_cols=14 Identities=21% Similarity=0.069 Sum_probs=11.3
Q ss_pred EEecCCCCCCCCCC
Q psy2779 74 AVAGGRTKCPKPPN 87 (101)
Q Consensus 74 ll~~G~p~~g~~~~ 87 (101)
+++-|+|++|||-.
T Consensus 9 v~lvG~~~vGKSsL 22 (192)
T 2cjw_A 9 VVLIGEQGVGKSTL 22 (192)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999998643
No 473
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=46.73 E-value=3.9 Score=31.28 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=13.2
Q ss_pred cceEEecCCCCCCCCC
Q psy2779 71 GGRAVAGGRTKCPKPP 86 (101)
Q Consensus 71 g~~ll~~G~p~~g~~~ 86 (101)
-+-+++.|+||+||+=
T Consensus 53 ~~h~~i~G~tGsGKs~ 68 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSV 68 (437)
T ss_dssp GGCEEEEECTTSSHHH
T ss_pred cceEEEECCCCCCHHH
Confidence 5567799999999984
No 474
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=46.73 E-value=3 Score=27.21 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=12.2
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++++|||-+
T Consensus 24 ~i~v~G~~~~GKssl 38 (189)
T 2x77_A 24 RVLMLGLDNAGKTSI 38 (189)
T ss_dssp EEEEEEETTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999743
No 475
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=46.70 E-value=4.7 Score=33.68 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.9
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||+|||
T Consensus 262 ~~~~~ll~~~TGsGKT 277 (797)
T 4a2q_A 262 NGKNALICAPTGSGKT 277 (797)
T ss_dssp TTCCEEEECCTTSCHH
T ss_pred hCCCEEEEeCCCChHH
Confidence 4677889999999998
No 476
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=46.53 E-value=5.4 Score=32.03 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=14.6
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+-+++..|||||||-
T Consensus 21 ~~~~~~~~a~TGtGKT~ 37 (551)
T 3crv_A 21 NNFLVALNAPTGSGKTL 37 (551)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred cCCcEEEECCCCccHHH
Confidence 47789999999999974
No 477
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=46.49 E-value=3.8 Score=27.27 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=10.9
Q ss_pred eEEecCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKP 85 (101)
Q Consensus 73 ~ll~~G~p~~g~~ 85 (101)
.+++.|++|+||+
T Consensus 26 ki~vvG~~~~GKS 38 (201)
T 3oes_A 26 KVVILGYRCVGKT 38 (201)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCcCHH
Confidence 4678899999985
No 478
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=46.10 E-value=4 Score=26.73 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=11.2
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 20 ki~v~G~~~~GKss 33 (194)
T 2atx_A 20 KCVVVGDGAVGKTC 33 (194)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999863
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=46.03 E-value=6.2 Score=33.02 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=15.9
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 379 v~~Gei~~i~G~NGsGKST 397 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTT 397 (607)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 480
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=45.49 E-value=5.6 Score=31.21 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=14.3
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+.+|+.|++|+||.
T Consensus 146 ~g~gvli~G~sG~GKS 161 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKS 161 (312)
T ss_dssp TTEEEEEEESSSSSHH
T ss_pred CCEEEEEEcCCCCCHH
Confidence 5888999999999994
No 481
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=45.48 E-value=5.9 Score=31.90 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=14.7
Q ss_pred ccceEEecCCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~ 86 (101)
.|+-+++-.|||||||-
T Consensus 25 ~~~~~~~~a~TGtGKT~ 41 (540)
T 2vl7_A 25 HGKTLLLNAKPGLGKTV 41 (540)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred cCCCEEEEcCCCCcHHH
Confidence 46788999999999983
No 482
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=45.47 E-value=5 Score=32.64 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.3
Q ss_pred ccccceEEecCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~ 85 (101)
.-.|..+.+.||+||||+
T Consensus 366 i~~G~~~~ivG~sGsGKS 383 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKS 383 (582)
T ss_dssp ECTTCEEEEEECTTSSHH
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 346889999999999986
No 483
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=45.44 E-value=5 Score=32.18 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=17.0
Q ss_pred cccccceEEecCCCCCCCCCCc
Q psy2779 67 SLFRGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 67 ~~~~g~~ll~~G~p~~g~~~~~ 88 (101)
..-.|..+.+-||+|||||-.-
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl 174 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLL 174 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHH
Confidence 3446888999999999997443
No 484
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=45.43 E-value=5 Score=35.51 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.1
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
..|+-+|+.+|||||||=
T Consensus 99 ~~g~~vLV~apTGSGKTl 116 (1010)
T 2xgj_A 99 DRGESVLVSAHTSAGKTV 116 (1010)
T ss_dssp HHTCEEEEECCTTSCHHH
T ss_pred HcCCCEEEECCCCCChHH
Confidence 457789999999999983
No 485
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=45.34 E-value=5.4 Score=35.20 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=15.5
Q ss_pred cccceEEecCCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~~ 86 (101)
..|+-+|+.+|||||||=
T Consensus 69 l~g~dvlv~apTGSGKTl 86 (1054)
T 1gku_B 69 LRKESFAATAPTGVGKTS 86 (1054)
T ss_dssp HTTCCEECCCCBTSCSHH
T ss_pred HhCCCEEEEcCCCCCHHH
Confidence 457889999999999993
No 486
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=45.29 E-value=4.2 Score=27.29 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
.+++.|++++||+-
T Consensus 27 ki~vvG~~~~GKSs 40 (207)
T 2fv8_A 27 KLVVVGDGACGKTC 40 (207)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 46788999999863
No 487
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=45.23 E-value=5.7 Score=35.33 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=17.1
Q ss_pred ccceEEecCCCCCCCCCCcee
Q psy2779 70 RGGRAVAGGRTKCPKPPNTSM 90 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~~~ 90 (101)
.|.++++.||+|+||+-+--+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ 681 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQ 681 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 488999999999999855443
No 488
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=45.06 E-value=5.9 Score=31.35 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.6
Q ss_pred cccceEEecCCCCCCCC
Q psy2779 69 FRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 69 ~~g~~ll~~G~p~~g~~ 85 (101)
..|.++.+.||+|+||+
T Consensus 213 ~~G~~~~lvG~sG~GKS 229 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKS 229 (358)
T ss_dssp HTTSEEEEECCTTSSHH
T ss_pred cCCCEEEEECCCCccHH
Confidence 35788999999999986
No 489
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=45.01 E-value=4.3 Score=27.59 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.6
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++|+||+-+
T Consensus 36 ki~vvG~~~vGKSsl 50 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSL 50 (214)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 467889999998643
No 490
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=45.00 E-value=4.3 Score=27.45 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=12.0
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++|+||+-+
T Consensus 17 ki~v~G~~~~GKSsl 31 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTF 31 (221)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999744
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=44.95 E-value=4.2 Score=27.17 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 27 ki~vvG~~~~GKSs 40 (201)
T 2gco_A 27 KLVIVGDGACGKTC 40 (201)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36688999999863
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=44.77 E-value=5.6 Score=29.74 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=12.5
Q ss_pred eEEecCCCCCCCCCCce
Q psy2779 73 RAVAGGRTKCPKPPNTS 89 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~~~ 89 (101)
.|-+.|+|||||+-...
T Consensus 10 ~~~~~G~pGsGKsT~a~ 26 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQAN 26 (230)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred ceeeECCCCCCHHHHHH
Confidence 35578999999975443
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=44.74 E-value=3.4 Score=26.97 Aligned_cols=15 Identities=13% Similarity=0.146 Sum_probs=12.0
Q ss_pred eEEecCCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPPN 87 (101)
Q Consensus 73 ~ll~~G~p~~g~~~~ 87 (101)
.+++.|++++||+-+
T Consensus 23 ~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 23 KVIIVGLDNAGKTTI 37 (181)
T ss_dssp EEEEEEETTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999643
No 494
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=44.69 E-value=4.2 Score=27.09 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.2
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++|||-
T Consensus 11 ki~i~G~~~~GKTs 24 (212)
T 2j0v_A 11 KCVTVGDGAVGKTC 24 (212)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999864
No 495
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=44.44 E-value=6.1 Score=32.52 Aligned_cols=19 Identities=16% Similarity=-0.071 Sum_probs=16.0
Q ss_pred ccccceEEecCCCCCCCCC
Q psy2779 68 LFRGGRAVAGGRTKCPKPP 86 (101)
Q Consensus 68 ~~~g~~ll~~G~p~~g~~~ 86 (101)
.-.|.++.+.||+||||+-
T Consensus 291 i~~Gei~~i~G~nGsGKST 309 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTT 309 (538)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3468899999999999863
No 496
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=44.12 E-value=8.4 Score=31.68 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=19.0
Q ss_pred cceeeeeccccccccceEEecCCCCCCCC
Q psy2779 57 SFQFERCKSHSLFRGGRAVAGGRTKCPKP 85 (101)
Q Consensus 57 ~~~~~~~~~~~~~~g~~ll~~G~p~~g~~ 85 (101)
+|..-+...-+ .|.++-+-||+||||+
T Consensus 13 ~f~l~~l~~~~--~Gei~gLiGpNGaGKS 39 (538)
T 3ozx_A 13 GFKLFGLPTPK--NNTILGVLGKNGVGKT 39 (538)
T ss_dssp SCEEECCCCCC--TTEEEEEECCTTSSHH
T ss_pred ceeecCCCCCC--CCCEEEEECCCCCcHH
Confidence 34445553333 5889999999999985
No 497
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=43.44 E-value=4.4 Score=36.23 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=14.3
Q ss_pred ccceEEecCCCCCCCC
Q psy2779 70 RGGRAVAGGRTKCPKP 85 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~ 85 (101)
.|+-+|+.+|||||||
T Consensus 198 ~g~dvLV~ApTGSGKT 213 (1108)
T 3l9o_A 198 RGESVLVSAHTSAGKT 213 (1108)
T ss_dssp TTCCEEEECCSSSHHH
T ss_pred cCCCEEEECCCCCChH
Confidence 4678899999999998
No 498
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=43.42 E-value=4.7 Score=27.11 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=11.1
Q ss_pred eEEecCCCCCCCCC
Q psy2779 73 RAVAGGRTKCPKPP 86 (101)
Q Consensus 73 ~ll~~G~p~~g~~~ 86 (101)
-+++.|++++||+-
T Consensus 31 ki~vvG~~~vGKSs 44 (201)
T 2hup_A 31 KLVLVGDASVGKTC 44 (201)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 35688999999863
No 499
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=43.42 E-value=4.8 Score=28.27 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=12.2
Q ss_pred ceEEecCCCCCCCCCC
Q psy2779 72 GRAVAGGRTKCPKPPN 87 (101)
Q Consensus 72 ~~ll~~G~p~~g~~~~ 87 (101)
..+++.|+||+||+-+
T Consensus 23 ~~I~lvG~~g~GKStl 38 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAA 38 (260)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3467889999998644
No 500
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=43.35 E-value=6.1 Score=31.92 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=15.5
Q ss_pred ccceEEecCCCCCCCCCCc
Q psy2779 70 RGGRAVAGGRTKCPKPPNT 88 (101)
Q Consensus 70 ~g~~ll~~G~p~~g~~~~~ 88 (101)
.+.++++.|++|+|||-.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4778888899999998544
Done!