RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2779
         (101 letters)



>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase;
          HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
          Length = 368

 Score = 77.3 bits (190), Expect = 2e-18
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 1  MKIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAAREVSRAVTWEKSFQF 60
           K+ E++   + +RI +HSH++GLGL +  E  + + G+VGQ AAR  +      +  + 
Sbjct: 8  TKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAG--VVLEMIRE 65

Query: 61 ERCKSHS-LFRGGRAVAGGRTKCPK 84
           +    + L  G      G+T    
Sbjct: 66 GKIAGRAVLIAGQPGT--GKTAIAM 88


>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
          chromatin regulator, growth regulation, hydrolase,
          nuclear protein, DNA recombination; HET: ADP; 2.2A
          {Homo sapiens} PDB: 2xsz_A*
          Length = 456

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 36/47 (76%), Positives = 41/47 (87%)

Query: 1  MKIEEVKSTVKTQRISSHSHVKGLGLKENGEANEMAAGLVGQQAARE 47
          MKIEEVKST KTQRI+SHSHVKGLGL E+G A + A+GLVGQ+ ARE
Sbjct: 1  MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENARE 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.010
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 26/93 (27%)

Query: 22  KGLGLKENGEANEMAAGLVGQQ----AAREVSRAVTWEKSFQFERCKS--HSLF----RG 71
           K LG    GE      G  G       A  ++   +WE SF F   +     LF    R 
Sbjct: 254 KLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWE-SF-FVSVRKAITVLFFIGVRC 310

Query: 72  GRAVAGGRTKCPK---PPNTSMIIDSWVEGSRG 101
             A        P    PP  S++ DS +E + G
Sbjct: 311 YEAY-------PNTSLPP--SILEDS-LENNEG 333



 Score = 26.2 bits (57), Expect = 2.6
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 26/82 (31%)

Query: 22   KGLGLKENGEANEMAAGLVGQQAAREV-------SRAVTWEK--------SF-Q------ 59
            KG  ++EN  A      + G+    ++       S + T+           F Q      
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739

Query: 60   ----FERCKSHSLFRGGRAVAG 77
                FE  KS  L       AG
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAG 1761


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.127    0.372 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,501,150
Number of extensions: 74450
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 6
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)