Query psy2782
Match_columns 147
No_of_seqs 139 out of 226
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 16:45:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mce_A Nascent polypeptide-ass 100.0 2.2E-31 7.6E-36 181.9 3.8 57 69-125 5-61 (61)
2 3mcb_A Nascent polypeptide-ass 100.0 3.2E-30 1.1E-34 172.3 4.9 54 71-124 1-54 (54)
3 1tr8_A Conserved protein (MTH1 99.8 1.8E-19 6.3E-24 132.5 4.1 53 70-123 2-58 (102)
4 3mcb_B Transcription factor BT 99.6 5.1E-16 1.8E-20 104.9 5.8 49 77-125 1-49 (58)
5 3lkx_A Transcription factor BT 99.6 1.2E-15 4.2E-20 105.3 6.3 49 77-125 1-49 (66)
6 1eej_A Thiol:disulfide interch 42.5 73 0.0025 23.6 6.4 43 65-118 2-51 (216)
7 1t3b_A Thiol:disulfide interch 39.9 8.8 0.0003 28.8 0.9 50 68-128 5-67 (211)
8 3h5t_A Transcriptional regulat 29.2 44 0.0015 26.0 3.4 56 45-100 15-77 (366)
9 2hzc_A Splicing factor U2AF 65 24.9 1.2E+02 0.0042 18.4 4.4 30 64-93 19-54 (87)
10 2fb9_A D-alanine:D-alanine lig 23.7 1.1E+02 0.0036 24.2 4.7 33 63-98 252-284 (322)
11 3r5x_A D-alanine--D-alanine li 23.5 1.1E+02 0.0039 23.2 4.7 31 65-98 232-262 (307)
12 1v58_A Thiol:disulfide interch 23.2 1.4E+02 0.0047 22.7 5.1 35 93-127 29-67 (241)
13 1x4g_A Nucleolysin TIAR; struc 21.5 1.5E+02 0.0051 19.2 4.5 25 63-92 37-61 (109)
14 2ytc_A PRE-mRNA-splicing facto 20.6 1.5E+02 0.0051 18.0 4.1 25 64-93 25-49 (85)
15 1cw0_A Protein (DNA mismatch e 20.4 59 0.002 24.7 2.5 21 58-78 17-37 (155)
16 2la4_A Nuclear and cytoplasmic 20.2 1.2E+02 0.0041 19.3 3.7 26 64-94 40-65 (101)
17 2cpj_A Non-POU domain-containi 20.0 80 0.0027 20.1 2.8 25 64-93 28-52 (99)
No 1
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.96 E-value=2.2e-31 Score=181.90 Aligned_cols=57 Identities=81% Similarity=1.165 Sum_probs=52.0
Q ss_pred HHHHHHhCCeecCCeeEEEEEecCceEEEEeCCeeeecCCCCcEEEEccccccchHH
Q psy2782 69 RKIMSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQ 125 (147)
Q Consensus 69 RKaL~KLGLk~V~gI~RVtirKskn~lfvI~~PdVyksp~SnTYIVFGEak~eDlsq 125 (147)
||+|+||||++|+||+||||||++|++|||++||||+||+|||||||||+++||++|
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence 689999999999999999999999999999999999999999999999999999986
No 2
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.96 E-value=3.2e-30 Score=172.30 Aligned_cols=54 Identities=85% Similarity=1.246 Sum_probs=52.6
Q ss_pred HHHHhCCeecCCeeEEEEEecCceEEEEeCCeeeecCCCCcEEEEccccccchH
Q psy2782 71 IMSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLS 124 (147)
Q Consensus 71 aL~KLGLk~V~gI~RVtirKskn~lfvI~~PdVyksp~SnTYIVFGEak~eDls 124 (147)
||+||||++||||+||||||++|++|||++||||+||+|||||||||+++||++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence 589999999999999999999999999999999999999999999999999985
No 3
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=99.76 E-value=1.8e-19 Score=132.51 Aligned_cols=53 Identities=30% Similarity=0.490 Sum_probs=43.1
Q ss_pred HHHHHhCC--eecCCeeEEEEEecCceEEEEeCCeeee--cCCCCcEEEEccccccch
Q psy2782 70 KIMSKLGL--KQIQGVSRVTIRKSKNILFVINKPDVFK--NPASDTYIVFGEAKIEDL 123 (147)
Q Consensus 70 KaL~KLGL--k~V~gI~RVtirKskn~lfvI~~PdVyk--sp~SnTYIVFGEak~eDl 123 (147)
|+|+|||| ++|+||+||+|||++ .+|||++|+||+ +|++|||+|||+++.+|+
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~ 58 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSL 58 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEE
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeecc
Confidence 68999999 899999999999999 999999999996 999999999999999865
No 4
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.62 E-value=5.1e-16 Score=104.86 Aligned_cols=49 Identities=22% Similarity=0.475 Sum_probs=46.2
Q ss_pred CeecCCeeEEEEEecCceEEEEeCCeeeecCCCCcEEEEccccccchHH
Q psy2782 77 LKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQ 125 (147)
Q Consensus 77 Lk~V~gI~RVtirKskn~lfvI~~PdVyksp~SnTYIVFGEak~eDlsq 125 (147)
+..|+||+||+|+|.+|+++||++|+||+|+++|||+|+|.++.++|+.
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e 49 (58)
T 3mcb_B 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (58)
T ss_dssp CCEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence 3579999999999999999999999999999999999999999998864
No 5
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=105.31 Aligned_cols=49 Identities=22% Similarity=0.475 Sum_probs=45.2
Q ss_pred CeecCCeeEEEEEecCceEEEEeCCeeeecCCCCcEEEEccccccchHH
Q psy2782 77 LKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQ 125 (147)
Q Consensus 77 Lk~V~gI~RVtirKskn~lfvI~~PdVyksp~SnTYIVFGEak~eDlsq 125 (147)
+..|+||+||+|+|.+|+++||++|+||+|+++|||+|+|.++.++++.
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e 49 (66)
T 3lkx_A 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (66)
T ss_dssp CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence 3579999999999999999999999999999999999999999998764
No 6
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=42.51 E-value=73 Score=23.65 Aligned_cols=43 Identities=16% Similarity=0.387 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCe-------ecCCeeEEEEEecCceEEEEeCCeeeecCCCCcEEEEccc
Q psy2782 65 EKKARKIMSKLGLK-------QIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEA 118 (147)
Q Consensus 65 EKKaRKaL~KLGLk-------~V~gI~RVtirKskn~lfvI~~PdVyksp~SnTYIVFGEa 118 (147)
+..++++|.++|++ +++|+.+|.+ +++ -+|-++ .+.|+|+|..
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~--~~~--------~~y~~~-dg~~~i~G~l 51 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG--------VLYITD-DGKHIIQGPM 51 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE--------EEEEET-TSCEEEESCE
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE--CCe--------EEEEcC-CCCEEEEeee
Confidence 35677888888864 5667777776 222 345554 4579999985
No 7
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=39.92 E-value=8.8 Score=28.84 Aligned_cols=50 Identities=10% Similarity=0.282 Sum_probs=30.0
Q ss_pred HHHHHHHhCCe-------ecCCeeEEEEEecCceEEEEeCCeeeecCCCCcEEEEcccc---cc---chHHHHH
Q psy2782 68 ARKIMSKLGLK-------QIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAK---IE---DLSQQAQ 128 (147)
Q Consensus 68 aRKaL~KLGLk-------~V~gI~RVtirKskn~lfvI~~PdVyksp~SnTYIVFGEak---~e---Dlsqqaq 128 (147)
+++.|.++|++ +++|+.+|.+ + ..-+|-++ .+.|+|+|..- .. +++.+..
T Consensus 5 ~~~~l~~~~~~v~~v~~~~~~Gl~~v~~--~--------~~~~y~~~-dg~~~i~G~l~d~~~~~~~~lt~~~~ 67 (211)
T 1t3b_A 5 IKRKLQSFNISNIVIKSSPISGIKTAVT--D--------QGILYVSE-DGKYLFEGKLYELTNNGPVDVAGKIL 67 (211)
T ss_dssp THHHHHTTTCCSCCCCBCSSTTEECCEE--T--------TEECEEES-SSSCEECSCCCCCTTTSCCCTHHHHH
T ss_pred HHHHHHHcCCceeeeecCCCCCeEEEEE--C--------CEEEEEcC-CCCEEEEeeEEEcCCCcccccchHHH
Confidence 45667776754 4566666666 2 22345554 56799999852 22 6776654
No 8
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=29.24 E-value=44 Score=26.02 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=30.9
Q ss_pred cccccCCchhhhhhhhhChhH------HHHHHHHHHhCCe-ecCCeeEEEEEecCceEEEEeC
Q psy2782 45 SAGASGLANDLVSKAKQSRGE------KKARKIMSKLGLK-QIQGVSRVTIRKSKNILFVINK 100 (147)
Q Consensus 45 ~~~~~~~~~~~~~~~kqsr~E------KKaRKaL~KLGLk-~V~gI~RVtirKskn~lfvI~~ 100 (147)
.|..+|++.-.+++.-.++.- +|.++++.+||+. |-+-.....-++++.+-|++..
T Consensus 15 iA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~ 77 (366)
T 3h5t_A 15 IAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTE 77 (366)
T ss_dssp HHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--------------CCEEEEEESS
T ss_pred HHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecC
Confidence 577788887777766554443 7899999999998 6554443434455555566544
No 9
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=24.92 E-value=1.2e+02 Score=18.44 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHh----CCeecC--CeeEEEEEecCc
Q psy2782 64 GEKKARKIMSKL----GLKQIQ--GVSRVTIRKSKN 93 (147)
Q Consensus 64 ~EKKaRKaL~KL----GLk~V~--gI~RVtirKskn 93 (147)
.|.-++..+.++ |+...+ -|.+|.|.++++
T Consensus 19 t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg 54 (87)
T 2hzc_A 19 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN 54 (87)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSS
T ss_pred CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCc
Confidence 467788999998 766555 477777776543
No 10
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=23.69 E-value=1.1e+02 Score=24.17 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHhCCeecCCeeEEEEEecCceEEEE
Q psy2782 63 RGEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVI 98 (147)
Q Consensus 63 r~EKKaRKaL~KLGLk~V~gI~RVtirKskn~lfvI 98 (147)
+-..-+++++..||+. |+.||-|+-+++.++++
T Consensus 252 ~i~~~a~~~~~alg~~---G~~~vD~~~~~g~~~vl 284 (322)
T 2fb9_A 252 TVQELALKAYKVLGVR---GMARVDFFLAEGELYLN 284 (322)
T ss_dssp HHHHHHHHHHHHHTCC---SEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhCCc---eEEEEEEEEECCcEEEE
Confidence 3346788899999985 99999998876655544
No 11
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=23.52 E-value=1.1e+02 Score=23.17 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCeecCCeeEEEEEecCceEEEE
Q psy2782 65 EKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVI 98 (147)
Q Consensus 65 EKKaRKaL~KLGLk~V~gI~RVtirKskn~lfvI 98 (147)
..-+++++..||+. |+.+|-|+..++.+++|
T Consensus 232 ~~~a~~~~~~lg~~---G~~~vD~~~~~g~~~vl 262 (307)
T 3r5x_A 232 NKASLACYKALKCS---VYARVDMMVKDGIPYVM 262 (307)
T ss_dssp HHHHHHHHHHTTCC---SEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhCCC---ceEEEEEEEECCeEEEE
Confidence 56788999999986 89999998877766665
No 12
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=23.16 E-value=1.4e+02 Score=22.71 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=19.3
Q ss_pred ceEEEEeC-CeeeecCCCCcEEEEccc---cccchHHHH
Q psy2782 93 NILFVINK-PDVFKNPASDTYIVFGEA---KIEDLSQQA 127 (147)
Q Consensus 93 n~lfvI~~-PdVyksp~SnTYIVFGEa---k~eDlsqqa 127 (147)
++..++.. ..|+.....+.|+|+|.. +-.+++.+.
T Consensus 29 g~~~~~~~~~~i~y~~~dg~~~i~G~l~d~~~~~lt~~~ 67 (241)
T 1v58_A 29 GYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTL 67 (241)
T ss_dssp EEEEEETTEEEEEEECTTSSCEEESCCBCTTCCBHHHHH
T ss_pred EEEEEeCCCceEEEEeCCCCEEEEEEEEeCCCCcccHHH
Confidence 44444423 334333346789999985 234566554
No 13
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.48 E-value=1.5e+02 Score=19.18 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHhCCeecCCeeEEEEEecC
Q psy2782 63 RGEKKARKIMSKLGLKQIQGVSRVTIRKSK 92 (147)
Q Consensus 63 r~EKKaRKaL~KLGLk~V~gI~RVtirKsk 92 (147)
-.|.-++..+.++| .|.+|.|.+++
T Consensus 37 ~t~~~l~~~F~~~G-----~i~~v~i~~~~ 61 (109)
T 1x4g_A 37 LTDQLMRQTFSPFG-----QIMEIRVFPEK 61 (109)
T ss_dssp CCHHHHHHHHHHHS-----CEEEEEEETTT
T ss_pred CCHHHHHHHHHhcC-----CeEEEEEeCCC
Confidence 35677999999998 57888887763
No 14
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.57 E-value=1.5e+02 Score=18.01 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhCCeecCCeeEEEEEecCc
Q psy2782 64 GEKKARKIMSKLGLKQIQGVSRVTIRKSKN 93 (147)
Q Consensus 64 ~EKKaRKaL~KLGLk~V~gI~RVtirKskn 93 (147)
.|.-++..+.++| .|.+|.|.++++
T Consensus 25 t~~~l~~~f~~~G-----~i~~~~~~~~kg 49 (85)
T 2ytc_A 25 TETDLRNHFYQFG-----EIRTITVVQRQQ 49 (85)
T ss_dssp CHHHHHHHHHTTS-----CEEEEEEEGGGT
T ss_pred CHHHHHHHHHhCC-----CEeEEEEECCCC
Confidence 4567889999887 478888887544
No 15
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=20.38 E-value=59 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.1
Q ss_pred hhhhChhHHHHHHHHHHhCCe
Q psy2782 58 KAKQSRGEKKARKIMSKLGLK 78 (147)
Q Consensus 58 ~~kqsr~EKKaRKaL~KLGLk 78 (147)
+.+.++.|.++|++|..+|++
T Consensus 17 R~~~T~pE~~lr~~L~~~G~r 37 (155)
T 1cw0_A 17 ATRDTAIEKRLASLLTGQGLA 37 (155)
T ss_dssp CSSSCHHHHHHHHHHHHTTCC
T ss_pred hcCCCcHHHHHHHHHHHCCCe
Confidence 456788999999999999986
No 16
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.21 E-value=1.2e+02 Score=19.27 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhCCeecCCeeEEEEEecCce
Q psy2782 64 GEKKARKIMSKLGLKQIQGVSRVTIRKSKNI 94 (147)
Q Consensus 64 ~EKKaRKaL~KLGLk~V~gI~RVtirKskn~ 94 (147)
.|.-++..+.++|- |.+|.|.++++.
T Consensus 40 ~~~~l~~~f~~~G~-----i~~~~~~~~~g~ 65 (101)
T 2la4_A 40 TEADLIPLFQNFGF-----ILDFKHYPEKGC 65 (101)
T ss_dssp CHHHHHHHHHTTSC-----CSEEEEETTTTE
T ss_pred CHHHHHHHHHhCCC-----EEEEEEecCCCE
Confidence 56779999999883 667777654443
No 17
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.04 E-value=80 Score=20.12 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhCCeecCCeeEEEEEecCc
Q psy2782 64 GEKKARKIMSKLGLKQIQGVSRVTIRKSKN 93 (147)
Q Consensus 64 ~EKKaRKaL~KLGLk~V~gI~RVtirKskn 93 (147)
.|.-++..+.++| .|.+|.|.++++
T Consensus 28 t~~~l~~~F~~~G-----~i~~v~~~~~kg 52 (99)
T 2cpj_A 28 TEEEMRKLFEKYG-----KAGEVFIHKDKG 52 (99)
T ss_dssp CHHHHHHHTSTTC-----CCSEEEEETTTT
T ss_pred CHHHHHHHHhhcC-----CeEEEEEecCCC
Confidence 4566888988887 467777776543
Done!