RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2782
         (147 letters)



>gnl|CDD|202009 pfam01849, NAC, NAC domain. 
          Length = 50

 Score = 74.5 bits (184), Expect = 7e-19
 Identities = 29/50 (58%), Positives = 35/50 (70%)

Query: 73  SKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIED 122
            KLGLK I+GV  VTIRK    + V N P V K+P S+TY+VFGEAK +D
Sbjct: 1   KKLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPGSNTYVVFGEAKEKD 50


>gnl|CDD|224227 COG1308, EGD2, Transcription factor homologous to NACalpha-BTF3
           [Transcription].
          Length = 122

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 66  KKARKIMSKLG--LKQIQGVSRVTIRKSKNILFVINKPDVF--KNPASDTYIVFGEAKIE 121
           +K +K+M ++G  ++++ GV RV I+       VI  P V   K     TY + G+   +
Sbjct: 9   RKLKKLMKQMGIDVEELDGVERVIIKLKDTEY-VIENPQVTVMKAMGQKTYQISGDPSAK 67

Query: 122 DLSQQAQVAAAEKFKAPE 139
           +  ++ +    ++    E
Sbjct: 68  EAVKKPEEKTVDESDISE 85


>gnl|CDD|152135 pfam11699, Mif2, Mif2/CENP-C like.  Mif2 is a yeast DNA-binding
           kinetochore protein which is orthologous to mammalian
           CENP-C, the inner-kinetochore centromere (CEN) binding
           protein. Mif2 binds in the CDEIII region of the
           budding-yeast centromere, and has been shown to recruit
           a substantial subset of all inner and outer kinetochore
           proteins. Mif2 adopts a cupin fold and is extremely
           similar both in polypeptide chain conformation and in
           dimer geometry to the dimerisation domain of a bacterial
           transcription factor. The Mif2 dimer appears to be part
           of an enhanceosome-like structure that nucleates
           kinetochore assembly in budding yeast.
          Length = 85

 Score = 27.3 bits (61), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 80  IQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIV 114
           IQG   VT+ ++    FVI K  VF+ P  + Y +
Sbjct: 40  IQGRVEVTVHETS---FVIGKGGVFQVPRGNEYSI 71


>gnl|CDD|222019 pfam13276, HTH_21, HTH-like domain.  This domain contains a
          predicted helix-turn-helix suggesting a DNA-binding
          function.
          Length = 60

 Score = 26.3 bits (59), Expect = 1.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 64 GEKKARKIMSKLGLKQIQ 81
            K+ R++M +LGL+   
Sbjct: 39 NRKRVRRLMRELGLRSRI 56


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.306    0.125    0.326 

Gapped
Lambda     K      H
   0.267   0.0824    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,136,678
Number of extensions: 626573
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 27
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 54 (24.4 bits)