RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2782
(147 letters)
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like
structure, NAC, homodimer, chaperone; 2.40A {Homo
sapiens}
Length = 61
Score = 100 bits (251), Expect = 3e-29
Identities = 46/54 (85%), Positives = 51/54 (94%)
Query: 72 MSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQ 125
SKLGL+Q+ GV+RVTIRKSKNILFVI KPDV+K+PASDTYIVFGEAKIEDLSQ
Sbjct: 8 FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like
structure, NAC, heterodimer, chaperone; 1.90A {Homo
sapiens} PDB: 3lkx_B
Length = 54
Score = 96.7 bits (241), Expect = 9e-28
Identities = 46/53 (86%), Positives = 51/53 (96%)
Query: 72 MSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLS 124
MSKLGL+Q+ GV+RVTIRKSKNILFVI KPDV+K+PASDTYIVFGEAKIEDLS
Sbjct: 2 MSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54
>1tr8_A Conserved protein (MTH177); chaperones, nascent
polypeptide-associated complex, ribosome domain,
ubiquitin, chaperone; 2.27A {Methanothermobacter
marburgensis}
Length = 102
Score = 57.7 bits (139), Expect = 5e-12
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 72 MSKLGLK--QIQGVSRVTIR-KSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQQAQ 128
M ++G+ ++GV V I+ K K I+ K +V + TY V G+A+ L + +
Sbjct: 4 MKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAEME 63
Query: 129 V 129
+
Sbjct: 64 I 64
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC,
heterodimer, chaperone; 1.90A {Homo sapiens}
Length = 58
Score = 27.0 bits (60), Expect = 0.67
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 77 LKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQQ 126
+ I G+ V + ++ + N P V + A++T+ + G A+ + L++
Sbjct: 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEM 50
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.78
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 125 QQA--QVAAAEKFKAPEISPAANI 146
+QA ++ A+ K A + +PA I
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo
sapiens}
Length = 66
Score = 25.9 bits (57), Expect = 2.1
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 79 QIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQQ 126
I G+ V + ++ + N P V + A++T+ + G A+ + L++
Sbjct: 3 NISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEM 50
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 2.2
Identities = 26/135 (19%), Positives = 37/135 (27%), Gaps = 52/135 (38%)
Query: 61 QSRG--------EKKARKI--------MSKLGLKQIQGVSR-----VTI----RKSKNI- 94
Q +G K A+ + G I + +TI K K I
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 95 -----LFVINKPD-------VFK--NPASDTYIVFGEAKIEDLSQQAQVA------AA-- 132
+ D +FK N S +Y E + +Q Q A AA
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 133 ---EKFKAPEISPAA 144
K P + A
Sbjct: 1746 DLKSKGLIPADATFA 1760
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V
1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X*
1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X*
1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Length = 154
Score = 25.6 bits (56), Expect = 5.3
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 66 KKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIEDLSQ 125
+ + L + + + ++ ++ K + ++ FGE E L
Sbjct: 15 TDIQDTLEMLNIHHVN--HCTLVPETDAYRGMVAK--------VNDFVAFGEPSQETLET 64
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486,
YYDK, transcriptional regulator, structural genomi 2;
2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Length = 239
Score = 25.3 bits (56), Expect = 8.9
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 82 GVSRVTIRK 90
VS+ TI K
Sbjct: 40 EVSKSTITK 48
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding,
transcription regulation, transcriptional regulator,
GNTR/HUTC family; 2.40A {Bacillus subtilis}
Length = 243
Score = 25.3 bits (56), Expect = 9.3
Identities = 5/9 (55%), Positives = 9/9 (100%)
Query: 82 GVSRVTIRK 90
G+SR+T+R+
Sbjct: 45 GISRMTVRQ 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.125 0.326
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,023,382
Number of extensions: 111558
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 16
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 53 (24.3 bits)