RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2782
         (147 letters)



>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
           monocytogenes [TaxId: 1639]}
          Length = 328

 Score = 25.3 bits (54), Expect = 4.0
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 85  RVTIRKSKNILFVINKP-DVFKNPASDTYIVFGEAKIEDLSQQAQV--AAAEKFKAPE 139
              I+K+ +I  +I  P  +FK+  +   I+  E    D+    +V  A       P 
Sbjct: 257 DKFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADVDVKPPKEVLLANLSSLTDPS 314


>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 154

 Score = 24.4 bits (53), Expect = 4.8
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 10/56 (17%)

Query: 66  KKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPASDTYIVFGEAKIE 121
              +  +  L +  +       + ++     ++ K         + ++ FGE   E
Sbjct: 15  TDIQDTLEMLNIHHVN--HCTLVPETDAYRGMVAK--------VNDFVAFGEPSQE 60


>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
           PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score = 24.7 bits (53), Expect = 5.0
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 76  GLKQIQGVSRVTIRKSKNILFVINKPDVFKN 106
           G K +     +TI KS+           F+N
Sbjct: 210 GQKSVDFDGEITIEKSEFPAVFFKNEKRFRN 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.125    0.326 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,536
Number of extensions: 19213
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 3
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 49 (23.4 bits)