BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2783
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/123 (97%), Positives = 121/123 (98%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
I
Sbjct: 125 IQL 127
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/112 (99%), Positives = 111/112 (99%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/123 (97%), Positives = 121/123 (98%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/112 (99%), Positives = 111/112 (99%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 70 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 121
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/123 (97%), Positives = 121/123 (98%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/112 (99%), Positives = 111/112 (99%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 117
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
I
Sbjct: 125 IQL 127
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/112 (98%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 118
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/112 (98%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
I
Sbjct: 125 IQL 127
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/112 (98%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 118
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/112 (98%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 70 PFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/88 (98%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMP+D
Sbjct: 68 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPQD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/112 (98%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 70 PFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHA+RVTIMPKD
Sbjct: 68 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAQRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHA+R
Sbjct: 70 PFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAQRV 121
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDF+TDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68 KLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDF+TDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 70 PFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/92 (96%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRLVREIAQDF+TDLRFQSSA
Sbjct: 61 STELLIRKLPFQRLVREIAQDFQTDLRFQSSA 92
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
+LPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68 QLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR+L
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRQL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 70 PFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/92 (96%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIR+LPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 STELLIRQLPFQRLVREIAQDFKTDLRFQSSA 92
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 70 PFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/92 (96%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQ 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 119/123 (96%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATG VKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
I
Sbjct: 125 IQL 127
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/112 (97%), Positives = 109/112 (97%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATG VKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7 TARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 118
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/89 (98%), Positives = 88/89 (98%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MARTKQTARKSTGGKAPRKQLATKAARKSAPATG VKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/123 (95%), Positives = 119/123 (96%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 223 bits (569), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 110/112 (98%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
I
Sbjct: 125 IQL 127
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7 TARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 67 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 118
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/89 (97%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LLIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAA 89
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 110/112 (98%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 70 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 121
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/92 (95%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61 STELLIRKLPFQRLVREIAQDFKTDLRFQSAA 92
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQL TKAA+K APATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQL TKAA+K APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/88 (96%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQL TKAA+K APATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/123 (95%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/123 (95%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDF TDLRFQSSAVMALQEASEAYLV LFEDTNL AIHAKRVTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDF TDLRFQSSAVMALQEASEAYLV LFEDTNL AIHAKR
Sbjct: 66 PFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRV 117
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/88 (98%), Positives = 87/88 (98%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDF TDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFXTDLRFQSSA 88
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/123 (93%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATK ARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8 KQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRL+REIAQDFKTDLRFQSSAVMALQEA E+YLVGLFEDTNLC IHAKRVTIMPKD
Sbjct: 68 KLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKD 127
Query: 230 IHW 232
I
Sbjct: 128 IQL 130
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATK ARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 10 TARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 69
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRL+REIAQDFKTDLRFQSSAVMALQEA E+YLVGLFEDTNLC IHAKR
Sbjct: 70 PFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRV 121
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/92 (95%), Positives = 89/92 (96%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
S MARTKQTARKSTGGKAPRKQLATK ARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1 GSHMARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
STELLIRKLPFQRL+REIAQDFKTDLRFQSSA
Sbjct: 61 STELLIRKLPFQRLMREIAQDFKTDLRFQSSA 92
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVAIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 109/113 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTA 113
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR A
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVA 118
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVIIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK VTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKHVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/110 (97%), Positives = 107/110 (97%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 110
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAK 115
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK VTIMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKAVTIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/110 (97%), Positives = 107/110 (97%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 110
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAK 115
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIMPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/123 (91%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQS+A+MALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 109/112 (97%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQS+A+MALQEA+EA+LV LFEDTNLC IHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRV 117
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAA 88
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/123 (90%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRV 117
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAA 88
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/122 (89%), Positives = 116/122 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREI QDFKTDLR+QS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64 KLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IH 231
I
Sbjct: 124 IQ 125
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/112 (90%), Positives = 107/112 (95%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREI QDFKTDLR+QS+A+ ALQEA+EA+LV LFEDTNLC IHAKR
Sbjct: 66 PFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRV 117
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/88 (95%), Positives = 87/88 (98%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREI QDFKTDLR+QS+A
Sbjct: 61 LIRKLPFQRLVREICQDFKTDLRWQSAA 88
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/121 (88%), Positives = 115/121 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRR+QKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKRVTI K+
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKE 123
Query: 230 I 230
I
Sbjct: 124 I 124
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/112 (90%), Positives = 107/112 (95%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRR+QKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRV 117
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/88 (95%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRR+QKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSA 88
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/107 (97%), Positives = 104/107 (97%)
Query: 126 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 185
LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
Sbjct: 1 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 186 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
TDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKDI
Sbjct: 61 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQL 107
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/98 (97%), Positives = 96/98 (97%)
Query: 15 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 74
LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
Sbjct: 1 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 75 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
TDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 61 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 98
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 272 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 331
LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
Sbjct: 1 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 332 TDLRFQSSA 340
TDLRFQSSA
Sbjct: 61 TDLRFQSSA 69
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/123 (90%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64 KLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IHW 232
I
Sbjct: 124 IQL 126
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 108/112 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 65
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
PFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKR
Sbjct: 66 PFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRV 117
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/86 (98%), Positives = 86/86 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQS 338
LIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQS 86
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/89 (95%), Positives = 86/89 (96%)
Query: 144 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 203
PHRYRPGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE
Sbjct: 1 PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 60
Query: 204 AYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
AYLV LFEDTNLCAIHAKRVTIMPKDI
Sbjct: 61 AYLVALFEDTNLCAIHAKRVTIMPKDIQL 89
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/80 (96%), Positives = 78/80 (97%)
Query: 33 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 92
PHRYRPGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE
Sbjct: 1 PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 60
Query: 93 AYLVGLFEDTNLCAIHAKRT 112
AYLV LFEDTNLCAIHAKR
Sbjct: 61 AYLVALFEDTNLCAIHAKRV 80
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/51 (98%), Positives = 51/51 (100%)
Query: 290 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
PHRYRPGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 1 PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 51
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/84 (97%), Positives = 82/84 (97%)
Query: 149 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 208
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 209 LFEDTNLCAIHAKRVTIMPKDIHW 232
LFEDTNLCAIHAKRVTIMPKDI
Sbjct: 61 LFEDTNLCAIHAKRVTIMPKDIEL 84
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/75 (98%), Positives = 74/75 (98%)
Query: 38 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 97
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 98 LFEDTNLCAIHAKRT 112
LFEDTNLCAIHAKR
Sbjct: 61 LFEDTNLCAIHAKRV 75
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/46 (100%), Positives = 46/46 (100%)
Query: 295 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 46
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 63/66 (95%)
Query: 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 227 PKDIHW 232
PKDI
Sbjct: 63 PKDIQL 68
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/57 (96%), Positives = 55/57 (96%)
Query: 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 59
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSA 30
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 63/66 (95%)
Query: 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 227 PKDIHW 232
PKDI
Sbjct: 62 PKDIQL 67
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/57 (96%), Positives = 55/57 (96%)
Query: 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 58
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSA 29
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 3/89 (3%)
Query: 146 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEAS 202
RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEAS
Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65
Query: 203 EAYLVGLFEDTNLCAIHAKRVTIMPKDIH 231
EAYLVGL E TNL A+HAKR+TIM KD+
Sbjct: 66 EAYLVGLLEHTNLLALHAKRITIMRKDMQ 94
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 64/80 (80%), Gaps = 3/80 (3%)
Query: 35 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEAS 91
RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEAS
Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65
Query: 92 EAYLVGLFEDTNLCAIHAKR 111
EAYLVGL E TNL A+HAKR
Sbjct: 66 EAYLVGLLEHTNLLALHAKR 85
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 292 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSA 340
RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A
Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMA 57
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 66/81 (81%), Gaps = 3/81 (3%)
Query: 153 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGL 209
AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEASEAYLVGL
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 210 FEDTNLCAIHAKRVTIMPKDI 230
E TNL A+HAKR+TIM KD+
Sbjct: 61 LEHTNLLALHAKRITIMRKDM 81
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Query: 42 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGL 98
AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEASEAYLVGL
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 99 FEDTNLCAIHAKR 111
E TNL A+HAKR
Sbjct: 61 LEHTNLLALHAKR 73
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 299 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSA 340
AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMA 45
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 55/68 (80%), Gaps = 3/68 (4%)
Query: 166 LLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 222
LLI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+HAKR
Sbjct: 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
Query: 223 VTIMPKDI 230
+TIM KD+
Sbjct: 70 ITIMKKDM 77
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 60/97 (61%), Gaps = 18/97 (18%)
Query: 55 LLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
LLI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+HAKR
Sbjct: 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
Query: 112 T---------ARKSTG------GKAPRKQLATKAARK 133
AR+ G G R +LA + RK
Sbjct: 70 ITIMKKDMQLARRIRGQFLVPRGSMERHKLADENMRK 106
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 312 LLIRKLPFQRLVREIAQDFKT---DLRFQSSA 340
LLI K+PF RLV+E+ +F T DLR+QS A
Sbjct: 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMA 41
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 114 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 168
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 8 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 65
Query: 169 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 66 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 125
Query: 227 PKDI 230
PKD+
Sbjct: 126 PKDV 129
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 3 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 57
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 8 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 65
Query: 58 RKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 66 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 122
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 260 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 314
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 8 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 65
Query: 315 RKLPFQRLVREIAQDF--KTDLRFQSSA 340
RKLPF RL REI F D +Q+ A
Sbjct: 66 RKLPFSRLAREICVKFTRGVDFNWQAQA 93
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 114 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 168
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 21 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 78
Query: 169 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 79 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 138
Query: 227 PKDI 230
PKD+
Sbjct: 139 PKDV 142
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 3 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 57
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 21 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 78
Query: 58 RKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 79 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 135
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 260 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 314
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 21 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 78
Query: 315 RKLPFQRLVREIAQDF--KTDLRFQSSA 340
RKLPF RL REI F D +Q+ A
Sbjct: 79 RKLPFSRLAREICVKFTRGVDFNWQAQA 106
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 114 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 168
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 169 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 63 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
Query: 227 PKDI 230
PKD+
Sbjct: 123 PKDV 126
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 3 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 57
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 58 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 63 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 119
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 260 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 314
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 315 RKLPFQRLVREIAQDFK--TDLRFQSSA 340
RKLPF RL REI F D +Q+ A
Sbjct: 63 RKLPFSRLAREICVKFTRGVDFNWQAQA 90
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 166 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 223
LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 224 TIMPKDI 230
T+ PKD+
Sbjct: 62 TLFPKDV 68
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 55 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112
LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 312 LLIRKLPFQRLVREIAQDFK--TDLRFQSSA 340
LLIRKLPF RL REI F D +Q+ A
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQA 32
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Query: 56 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 108
LI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Query: 167 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 219
LI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 313 LIRKLPFQRLVREIAQDFKT---DLRFQSSA 340
LI K+PF RLV+E+ +F T DLR+QS A
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMA 31
>pdb|4FT4|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|Q Chain Q, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 32
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/32 (96%), Positives = 31/32 (96%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 284
ARTKQTAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 1 ARTKQTARXSTGGKAPRKQLATKAARKSAPAT 32
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 28/29 (96%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPAT 138
K+TAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 4 KQTARXSTGGKAPRKQLATKAARKSAPAT 32
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/27 (96%), Positives = 26/27 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPAT 27
TAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 6 TARXSTGGKAPRKQLATKAARKSAPAT 32
>pdb|3N9P|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9P|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
Length = 32
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 284
ART QTARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 1 ARTXQTARKSTGGKAPRKQLATKAARXSAPAS 32
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 26/27 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPAT 27
TARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 6 TARKSTGGKAPRKQLATKAARXSAPAS 32
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 26/27 (96%)
Query: 112 TARKSTGGKAPRKQLATKAARKSAPAT 138
TARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 6 TARKSTGGKAPRKQLATKAARXSAPAS 32
>pdb|3N9N|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9N|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
Length = 32
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 284
ART QTAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKAARKSAPAS 32
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 26/27 (96%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPAT 27
TAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 6 TARXSTGGKAPRKQLATKAARKSAPAS 32
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 26/27 (96%)
Query: 112 TARKSTGGKAPRKQLATKAARKSAPAT 138
TAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 6 TARXSTGGKAPRKQLATKAARKSAPAS 32
>pdb|4HSU|C Chain C, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 30
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/30 (96%), Positives = 29/30 (96%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAP 282
ART QTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAARKSAP 30
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/25 (100%), Positives = 25/25 (100%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAP 25
TARKSTGGKAPRKQLATKAARKSAP
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAP 30
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/25 (100%), Positives = 25/25 (100%)
Query: 112 TARKSTGGKAPRKQLATKAARKSAP 136
TARKSTGGKAPRKQLATKAARKSAP
Sbjct: 6 TARKSTGGKAPRKQLATKAARKSAP 30
>pdb|4GU0|E Chain E, Crystal Structure Of Lsd2 With H3
pdb|4GU0|F Chain F, Crystal Structure Of Lsd2 With H3
Length = 26
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 25/26 (96%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAAR 278
ART QTARKSTGGKAPRKQLATKAAR
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAAR 26
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1 TARKSTGGKAPRKQLATKAAR 21
TARKSTGGKAPRKQLATKAAR
Sbjct: 6 TARKSTGGKAPRKQLATKAAR 26
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 112 TARKSTGGKAPRKQLATKAAR 132
TARKSTGGKAPRKQLATKAAR
Sbjct: 6 TARKSTGGKAPRKQLATKAAR 26
>pdb|3U5P|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 28
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKS 280
ARTKQTAR STGG APR QLAT AARKS
Sbjct: 1 ARTKQTARXSTGGXAPRXQLATXAARKS 28
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKS 134
K+TAR STGG APR QLAT AARKS
Sbjct: 4 KQTARXSTGGXAPRXQLATXAARKS 28
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 19/23 (82%)
Query: 1 TARKSTGGKAPRKQLATKAARKS 23
TAR STGG APR QLAT AARKS
Sbjct: 6 TARXSTGGXAPRXQLATXAARKS 28
>pdb|2P5B|I Chain I, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|J Chain J, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2PXJ|I Chain I, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|J Chain J, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 22
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 21 RKSAPATGGVKKPHRYRPGTV 41
RKSAPATGGV KPHRYRPGTV
Sbjct: 1 RKSAPATGGVXKPHRYRPGTV 21
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 132 RKSAPATGGVKKPHRYRPGTV 152
RKSAPATGGV KPHRYRPGTV
Sbjct: 1 RKSAPATGGVXKPHRYRPGTV 21
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 278 RKSAPATGGVKKPHRYRPGTV 298
RKSAPATGGV KPHRYRPGTV
Sbjct: 1 RKSAPATGGVXKPHRYRPGTV 21
>pdb|2X4W|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|D Chain D, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|F Chain F, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|H Chain H, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|D Chain D, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|F Chain F, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|H Chain H, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|J Chain J, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|L Chain L, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|N Chain N, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|P Chain P, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1
Length = 21
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 17 TKAARKSAPATGGVKKPHRYR 37
TKAARKSAPATGGV KPHRYR
Sbjct: 1 TKAARKSAPATGGVXKPHRYR 21
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 128 TKAARKSAPATGGVKKPHRYR 148
TKAARKSAPATGGV KPHRYR
Sbjct: 1 TKAARKSAPATGGVXKPHRYR 21
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 274 TKAARKSAPATGGVKKPHRYR 294
TKAARKSAPATGGV KPHRYR
Sbjct: 1 TKAARKSAPATGGVXKPHRYR 21
>pdb|3KV4|B Chain B, Structure Of Phf8 In Complex With Histone H3
Length = 24
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 22/24 (91%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKA 276
ART QTAR STGGKAPRKQLATKA
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKA 24
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 19/20 (95%)
Query: 111 RTARKSTGGKAPRKQLATKA 130
+TAR STGGKAPRKQLATKA
Sbjct: 5 QTARXSTGGKAPRKQLATKA 24
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 1 TARKSTGGKAPRKQLATKA 19
TAR STGGKAPRKQLATKA
Sbjct: 6 TARXSTGGKAPRKQLATKA 24
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With
Histone H3
Length = 159
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 110 KRTARKSTGGKAPRKQL 126
K+TARKSTGGKAPRKQL
Sbjct: 4 KQTARKSTGGKAPRKQL 20
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 1 TARKSTGGKAPRKQL 15
TARKSTGGKAPRKQL
Sbjct: 6 TARKSTGGKAPRKQL 20
>pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE
H3K27ME3 PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
Length = 22
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 12 RKQLATKAARKSAPATGGVKKP 33
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 123 RKQLATKAARKSAPATGGVKKP 144
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 269 RKQLATKAARKSAPATGGVKKP 290
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
>pdb|2KFT|B Chain B, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 21
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 253 ARTKQTARKSTGGKAPRKQLA 273
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLC 21
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 110 KRTARKSTGGKAPRKQLA 127
K+TARKSTGGKAPRKQL
Sbjct: 4 KQTARKSTGGKAPRKQLC 21
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 1 TARKSTGGKAPRKQLA 16
TARKSTGGKAPRKQL
Sbjct: 6 TARKSTGGKAPRKQLC 21
>pdb|2KWK|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
Length = 20
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 110 KRTARKSTGGKAPRKQL 126
K+TARKSTGGKAPRKQL
Sbjct: 4 KQTARKSTGGKAPRKQL 20
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 1 TARKSTGGKAPRKQL 15
TARKSTGGKAPRKQL
Sbjct: 6 TARKSTGGKAPRKQL 20
>pdb|2UXN|E Chain E, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
Length = 21
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 253 ARTKQTARKSTGGKAPRKQLA 273
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTXQTARKSTGGKAPRKQLA 21
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 111 RTARKSTGGKAPRKQLA 127
+TARKSTGGKAPRKQLA
Sbjct: 5 QTARKSTGGKAPRKQLA 21
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Query: 1 TARKSTGGKAPRKQLA 16
TARKSTGGKAPRKQLA
Sbjct: 6 TARKSTGGKAPRKQLA 21
>pdb|2V1D|C Chain C, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|4GUR|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
Length = 21
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 253 ARTKQTARKSTGGKAPRKQLA 273
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTMQTARKSTGGKAPRKQLA 21
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 111 RTARKSTGGKAPRKQLA 127
+TARKSTGGKAPRKQLA
Sbjct: 5 QTARKSTGGKAPRKQLA 21
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Query: 1 TARKSTGGKAPRKQLA 16
TARKSTGGKAPRKQLA
Sbjct: 6 TARKSTGGKAPRKQLA 21
>pdb|2G46|C Chain C, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|D Chain D, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
Length = 21
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 8 GKAPRKQLATKAARKSAPATG 28
GKAPRKQLATKAAR SAPATG
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 119 GKAPRKQLATKAARKSAPATG 139
GKAPRKQLATKAAR SAPATG
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 265 GKAPRKQLATKAARKSAPATG 285
GKAPRKQLATKAAR SAPATG
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
>pdb|1M1D|B Chain B, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|D Chain D, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|2KTB|A Chain A, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
pdb|2KWJ|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
Length = 20
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
ARTKQTARKSTGG APRKQL
Sbjct: 1 ARTKQTARKSTGGXAPRKQL 20
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 110 KRTARKSTGGKAPRKQL 126
K+TARKSTGG APRKQL
Sbjct: 4 KQTARKSTGGXAPRKQL 20
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 1 TARKSTGGKAPRKQL 15
TARKSTGG APRKQL
Sbjct: 6 TARKSTGGXAPRKQL 20
>pdb|4FWF|E Chain E, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
Length = 20
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
ART QTARKSTGGKAPRKQL
Sbjct: 1 ARTMQTARKSTGGKAPRKQL 20
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 16/16 (100%)
Query: 111 RTARKSTGGKAPRKQL 126
+TARKSTGGKAPRKQL
Sbjct: 5 QTARKSTGGKAPRKQL 20
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 1 TARKSTGGKAPRKQL 15
TARKSTGGKAPRKQL
Sbjct: 6 TARKSTGGKAPRKQL 20
>pdb|2YBA|C Chain C, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|D Chain D, Crystal Structure Of Nurf55 In Complex With Histone H3
Length = 19
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQ 271
ARTKQTARKSTGGKAPRKQ
Sbjct: 1 ARTKQTARKSTGGKAPRKQ 19
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 16/16 (100%)
Query: 110 KRTARKSTGGKAPRKQ 125
K+TARKSTGGKAPRKQ
Sbjct: 4 KQTARKSTGGKAPRKQ 19
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 1 TARKSTGGKAPRKQ 14
TARKSTGGKAPRKQ
Sbjct: 6 TARKSTGGKAPRKQ 19
>pdb|3U5O|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
Length = 22
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 19/22 (86%)
Query: 253 ARTKQTARKSTGGKAPRKQLAT 274
ARTKQTAR STGG APR QLAT
Sbjct: 1 ARTKQTARXSTGGXAPRXQLAT 22
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 110 KRTARKSTGGKAPRKQLAT 128
K+TAR STGG APR QLAT
Sbjct: 4 KQTARXSTGGXAPRXQLAT 22
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 1 TARKSTGGKAPRKQLAT 17
TAR STGG APR QLAT
Sbjct: 6 TARXSTGGXAPRXQLAT 22
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain
Histone Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain
Histone Chimera
Length = 361
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG 39
TARKSTGG APRK RK A GG + +Y PG
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGGSDERPKYLPG 45
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 112 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG 150
TARKSTGG APRK RK A GG + +Y PG
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGGSDERPKYLPG 45
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 258 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG 296
TARKSTGG APRK RK A GG + +Y PG
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGGSDERPKYLPG 45
>pdb|2K3Y|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain Bound To
Histone H3 With A Dimethyllysine Analog H3k36me2
Length = 136
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 10 APRKQLATKAAR-KSAPATGGVKKPHRYR 37
A +K+LA +A SAPATGGV KPHRYR
Sbjct: 108 AMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 121 APRKQLATKAAR-KSAPATGGVKKPHRYR 148
A +K+LA +A SAPATGGV KPHRYR
Sbjct: 108 AMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 267 APRKQLATKAAR-KSAPATGGVKKPHRYR 294
A +K+LA +A SAPATGGV KPHRYR
Sbjct: 108 AMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>pdb|1PU9|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue Histone H3 Peptide
Length = 19
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 19/19 (100%)
Query: 257 QTARKSTGGKAPRKQLATK 275
QTARKSTGGKAPRKQLA+K
Sbjct: 1 QTARKSTGGKAPRKQLASK 19
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 19/19 (100%)
Query: 111 RTARKSTGGKAPRKQLATK 129
+TARKSTGGKAPRKQLA+K
Sbjct: 1 QTARKSTGGKAPRKQLASK 19
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 18/18 (100%)
Query: 1 TARKSTGGKAPRKQLATK 18
TARKSTGGKAPRKQLA+K
Sbjct: 2 TARKSTGGKAPRKQLASK 19
>pdb|3O34|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
Length = 22
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 8 GKAPRKQLATKAARKSAPAT 27
GKAPRKQLAT AARKSAPAT
Sbjct: 1 GKAPRKQLATXAARKSAPAT 20
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 119 GKAPRKQLATKAARKSAPAT 138
GKAPRKQLAT AARKSAPAT
Sbjct: 1 GKAPRKQLATXAARKSAPAT 20
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 265 GKAPRKQLATKAARKSAPAT 284
GKAPRKQLAT AARKSAPAT
Sbjct: 1 GKAPRKQLATXAARKSAPAT 20
>pdb|3U5N|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
Length = 20
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
ARTKQTAR STGG APRKQL
Sbjct: 1 ARTKQTARXSTGGXAPRKQL 20
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 110 KRTARKSTGGKAPRKQL 126
K+TAR STGG APRKQL
Sbjct: 4 KQTARXSTGGXAPRKQL 20
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 1 TARKSTGGKAPRKQL 15
TAR STGG APRKQL
Sbjct: 6 TARXSTGGXAPRKQL 20
>pdb|2B2W|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
Length = 20
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
ART QTARKSTGGKAPRKQ
Sbjct: 1 ARTXQTARKSTGGKAPRKQY 20
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 1 TARKSTGGKAPRKQL 15
TARKSTGGKAPRKQ
Sbjct: 6 TARKSTGGKAPRKQY 20
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 112 TARKSTGGKAPRKQL 126
TARKSTGGKAPRKQ
Sbjct: 6 TARKSTGGKAPRKQY 20
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 125 QLATKAARKSAPATGG--VKKPHRYRPGT-VALREIRRYQKSTELLIRKLPFQRLV---R 178
Q TKAARKSAPATGG H + GT + L + +R++ + L++ F R+
Sbjct: 145 QGPTKAARKSAPATGGGSSGSHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRVTSTGN 204
Query: 179 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
++ T L + V + + G E+ N C+++ + I P D W
Sbjct: 205 MLSHVGHTILGMNT--VQLYMKVPGSRTPGHQENNNFCSVN---INIGPGDCEW 253
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 14 QLATKAARKSAPATGG--VKKPHRYRPGT-VALREIRRYQKSTELLIRKLPFQRL 65
Q TKAARKSAPATGG H + GT + L + +R++ + L++ F R+
Sbjct: 145 QGPTKAARKSAPATGGGSSGSHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRV 199
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 271 QLATKAARKSAPATGG--VKKPHRYRPGT-VALREIRRYQKSTELLIRKLPFQRL 322
Q TKAARKSAPATGG H + GT + L + +R++ + L++ F R+
Sbjct: 145 QGPTKAARKSAPATGGGSSGSHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRV 199
>pdb|1PUA|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A Phosphorylated, 19-Residue Histone H3 Peptide
Length = 19
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 257 QTARKSTGGKAPRKQLATK 275
QTARK TGGKAPRKQLA+K
Sbjct: 1 QTARKXTGGKAPRKQLASK 19
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 111 RTARKSTGGKAPRKQLATK 129
+TARK TGGKAPRKQLA+K
Sbjct: 1 QTARKXTGGKAPRKQLASK 19
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 1 TARKSTGGKAPRKQLATK 18
TARK TGGKAPRKQLA+K
Sbjct: 2 TARKXTGGKAPRKQLASK 19
>pdb|2Q8D|F Chain F, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|G Chain G, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|F Chain F, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|G Chain G, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 16
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 21 RKSAPATGGVKKPHRY 36
RKSAPATGGV KPHRY
Sbjct: 1 RKSAPATGGVXKPHRY 16
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 132 RKSAPATGGVKKPHRY 147
RKSAPATGGV KPHRY
Sbjct: 1 RKSAPATGGVXKPHRY 16
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 278 RKSAPATGGVKKPHRY 293
RKSAPATGGV KPHRY
Sbjct: 1 RKSAPATGGVXKPHRY 16
>pdb|2B2T|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 20
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
AR QTARKSTGGKAPRKQ
Sbjct: 1 ARXXQTARKSTGGKAPRKQY 20
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 1 TARKSTGGKAPRKQL 15
TARKSTGGKAPRKQ
Sbjct: 6 TARKSTGGKAPRKQY 20
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 112 TARKSTGGKAPRKQL 126
TARKSTGGKAPRKQ
Sbjct: 6 TARKSTGGKAPRKQY 20
>pdb|3V43|Q Chain Q, Crystal Structure Of Moz
Length = 18
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 253 ARTKQTARKSTGGKAPRK 270
ARTKQTARKSTGG APRK
Sbjct: 1 ARTKQTARKSTGGXAPRK 18
>pdb|2RSN|B Chain B, Solution Structure Of The Chromodomain Of Chp1 In Complex
With H3k9me3 Peptide
Length = 18
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 253 ARTKQTARKSTGGKAPR 269
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|3N9O|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|4GY5|E Chain E, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|F Chain F, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 17
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 253 ARTKQTARKSTGGKAPR 269
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|2VPG|P Chain P, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|R Chain R, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 18
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 253 ARTKQTARKSTGGKAPRK 270
A T QTARKSTGGKAPRK
Sbjct: 1 AXTXQTARKSTGGKAPRK 18
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 111 RTARKSTGGKAPRK 124
+TARKSTGGKAPRK
Sbjct: 5 QTARKSTGGKAPRK 18
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 1 TARKSTGGKAPRK 13
TARKSTGGKAPRK
Sbjct: 6 TARKSTGGKAPRK 18
>pdb|1PDQ|B Chain B, Polycomb Chromodomain Complexed With The Histone H3 Tail
Containing Trimethyllysine 27
Length = 18
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 10 APRKQLATKAARKSAPAT 27
APRKQLATKAAR SAP+T
Sbjct: 1 APRKQLATKAARXSAPST 18
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 121 APRKQLATKAARKSAPAT 138
APRKQLATKAAR SAP+T
Sbjct: 1 APRKQLATKAARXSAPST 18
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 267 APRKQLATKAARKSAPAT 284
APRKQLATKAAR SAP+T
Sbjct: 1 APRKQLATKAARXSAPST 18
>pdb|3N9Q|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
Length = 17
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 14 QLATKAARKSAPATGGV 30
QLATKAAR SAPA+GGV
Sbjct: 1 QLATKAARXSAPASGGV 17
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 125 QLATKAARKSAPATGGV 141
QLATKAAR SAPA+GGV
Sbjct: 1 QLATKAARXSAPASGGV 17
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 271 QLATKAARKSAPATGGV 287
QLATKAAR SAPA+GGV
Sbjct: 1 QLATKAARXSAPASGGV 17
>pdb|2X0L|C Chain C, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 16
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 253 ARTKQTARKSTGGKAP 268
ART QTARKSTGGKAP
Sbjct: 1 ARTMQTARKSTGGKAP 16
>pdb|4A7J|B Chain B, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 16
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 252 MARTKQTARKSTGGKA 267
MA TKQTARKSTGGKA
Sbjct: 1 MAXTKQTARKSTGGKA 16
>pdb|1PEG|P Chain P, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|Q Chain Q, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|2CO0|B Chain B, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|2CO0|D Chain D, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|3QLC|C Chain C, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|D Chain D, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|4GNF|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
Length = 15
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 253 ARTKQTARKSTGGKA 267
ARTKQTARKSTGGKA
Sbjct: 1 ARTKQTARKSTGGKA 15
>pdb|2KVM|B Chain B, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 16
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 10 APRKQLATKAARKSAP 25
APRKQLATKAAR SAP
Sbjct: 1 APRKQLATKAARXSAP 16
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 121 APRKQLATKAARKSAP 136
APRKQLATKAAR SAP
Sbjct: 1 APRKQLATKAARXSAP 16
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 267 APRKQLATKAARKSAP 282
APRKQLATKAAR SAP
Sbjct: 1 APRKQLATKAARXSAP 16
>pdb|3FCU|A Chain A, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|C Chain C, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|E Chain E, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3NID|A Chain A, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|C Chain C, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3T3M|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 457
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 236 WCDNLTECSTWQHNSTMARTKQTARKSTG 264
W D + C+ WQH + + +T++ + G
Sbjct: 100 WSDVIVACAPWQHWNVLEKTEEAEKTPVG 128
>pdb|2VC2|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
Length = 452
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 236 WCDNLTECSTWQHNSTMARTKQTARKSTG 264
W D + C+ WQH + + +T++ + G
Sbjct: 100 WSDVIVACAPWQHWNVLEKTEEAEKTPVG 128
>pdb|1TYE|A Chain A, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|C Chain C, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|E Chain E, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 452
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 236 WCDNLTECSTWQHNSTMARTKQTARKSTG 264
W D + C+ WQH + + +T++ + G
Sbjct: 100 WSDVIVACAPWQHWNVLEKTEEAEKTPVG 128
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 236 WCDNLTECSTWQHNSTMARTKQTARKSTG 264
W D + C+ WQH + + +T++ + G
Sbjct: 100 WSDVIVACAPWQHWNVLEKTEEAEKTPVG 128
>pdb|1GUW|B Chain B, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 18
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 253 ARTKQTARKSTGGKAP 268
ART QTAR STGGKAP
Sbjct: 1 ARTXQTARXSTGGKAP 16
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI--MPKDIH 231
+ ++R +Q ++ +A M LQ+ A +EDT + I+ + +++ + D+H
Sbjct: 354 EEIIRNCSQKVYESMKKNVTAFMKLQQYMPAVFAKAYEDT-VLFIYNRLISLNEVGSDLH 412
Query: 232 WPSQWCD-----NLTECSTWQHNST 251
+ S CD NL T N+T
Sbjct: 413 YYSISCDKFHEFNLKRVGTLSFNAT 437
>pdb|3Q33|D Chain D, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 15
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 253 ARTKQTARKSTGGK 266
ARTKQTARKSTGGK
Sbjct: 1 ARTKQTARKSTGGK 14
>pdb|2B2V|D Chain D, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
Length = 16
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 253 ARTKQTARKSTGGKA 267
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|1KNA|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|P Chain P, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9.
pdb|3G7L|P Chain P, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 16
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 253 ARTKQTARKSTGGKA 267
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|3H91|C Chain C, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|3H91|D Chain D, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|2L1B|B Chain B, Solution Nmr Structure Of The Chromobox Protein Cbx7
With H3k27me3
Length = 15
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 14 QLATKAARKSAPATG 28
QLATKAAR SAPATG
Sbjct: 1 QLATKAARXSAPATG 15
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 125 QLATKAARKSAPATG 139
QLATKAAR SAPATG
Sbjct: 1 QLATKAARXSAPATG 15
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 271 QLATKAARKSAPATG 285
QLATKAAR SAPATG
Sbjct: 1 QLATKAARXSAPATG 15
>pdb|2Q8C|F Chain F, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|G Chain G, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|3B95|P Chain P, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|2RNW|B Chain B, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|3FDT|T Chain T, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
pdb|3GV6|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k9 Peptide
pdb|2L11|B Chain B, Solution Nmr Structure Of The Cbx3 In Complex With H3k9me3
Peptide
pdb|2L12|B Chain B, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|3QO2|P Chain P, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|Q Chain Q, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|R Chain R, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|S Chain S, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3R93|E Chain E, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|F Chain F, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|G Chain G, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|H Chain H, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|2LBM|C Chain C, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
pdb|3QL9|C Chain C, Monoclinic Complex Structure Of Atrx Add Bound To Histone
H3k9me3 Peptide
pdb|3QLA|C Chain C, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|F Chain F, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|4FT2|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4GNG|B Chain B, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|F Chain F, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 15
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 253 ARTKQTARKSTGGKA 267
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|2F6J|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2FSA|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FUU|B Chain B, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
pdb|3N9L|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9O|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9Q|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
Length = 15
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 253 ARTKQTARKSTGGKA 267
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|3UIG|P Chain P, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|Q Chain Q, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
Length = 15
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 253 ARTKQTARKSTGGKA 267
AR KQTARKSTGGKA
Sbjct: 1 ARXKQTARKSTGGKA 15
>pdb|3MO8|B Chain B, Pwwp Domain Of Human Bromodomain And Phd
Finger-Containing Protein 1 In Complex With
Trimethylated H3k36 Peptide
pdb|2YBP|C Chain C, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|D Chain D, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|C Chain C, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|D Chain D, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
Length = 12
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 25 PATGGVKKPHRY 36
PATGGV KPHRY
Sbjct: 1 PATGGVXKPHRY 12
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 136 PATGGVKKPHRY 147
PATGGV KPHRY
Sbjct: 1 PATGGVXKPHRY 12
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 282 PATGGVKKPHRY 293
PATGGV KPHRY
Sbjct: 1 PATGGVXKPHRY 12
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,065,255
Number of Sequences: 62578
Number of extensions: 334858
Number of successful extensions: 1410
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 297
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)