Query psy2783
Match_columns 340
No_of_seqs 281 out of 989
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 16:46:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00018 histone H3; Provision 100.0 8.7E-48 1.9E-52 332.9 9.6 130 110-239 5-134 (136)
2 PLN00121 histone H3; Provision 100.0 1.6E-47 3.5E-52 331.2 9.3 130 110-239 5-134 (136)
3 PLN00161 histone H3; Provision 100.0 2.4E-46 5.1E-51 323.1 8.7 122 114-241 8-130 (135)
4 KOG1745|consensus 100.0 4.5E-46 9.8E-51 321.6 9.4 131 109-239 4-135 (137)
5 PLN00160 histone H3; Provision 100.0 2.7E-44 5.9E-49 295.7 7.0 95 147-241 1-96 (97)
6 smart00428 H3 Histone H3. 100.0 6.2E-44 1.3E-48 297.5 7.2 100 140-239 2-103 (105)
7 PTZ00018 histone H3; Provision 100.0 3.9E-41 8.4E-46 291.6 8.0 115 1-115 7-121 (136)
8 PLN00121 histone H3; Provision 100.0 5.4E-41 1.2E-45 290.7 7.7 115 1-115 7-121 (136)
9 PLN00161 histone H3; Provision 100.0 1.3E-39 2.7E-44 281.3 6.9 107 3-115 8-115 (135)
10 KOG1745|consensus 100.0 6.8E-39 1.5E-43 277.0 7.6 115 1-115 7-122 (137)
11 PLN00160 histone H3; Provision 100.0 2.3E-36 5.1E-41 248.8 5.2 80 36-115 1-81 (97)
12 smart00428 H3 Histone H3. 100.0 2.9E-36 6.2E-41 251.5 5.6 87 29-115 2-90 (105)
13 COG2036 HHT1 Histones H3 and H 99.8 5.8E-22 1.3E-26 161.9 5.1 85 149-238 1-85 (91)
14 PF00125 Histone: Core histone 99.7 3E-18 6.5E-23 132.3 3.4 75 163-237 1-75 (75)
15 COG2036 HHT1 Histones H3 and H 99.7 3.7E-17 8.1E-22 133.8 3.8 73 38-115 1-73 (91)
16 PF00125 Histone: Core histone 99.2 2.8E-12 6.1E-17 99.0 2.6 64 52-115 1-64 (75)
17 cd07981 TAF12 TATA Binding Pro 98.9 1.6E-09 3.5E-14 84.7 4.2 58 179-236 9-66 (72)
18 cd00076 H4 Histone H4, one of 97.7 4.3E-05 9.3E-10 62.3 3.7 72 161-237 7-78 (85)
19 cd07981 TAF12 TATA Binding Pro 97.6 5E-05 1.1E-09 59.4 3.6 50 62-115 7-56 (72)
20 PF00808 CBFD_NFYB_HMF: Histon 97.5 9.3E-05 2E-09 56.1 3.4 55 179-233 10-64 (65)
21 smart00803 TAF TATA box bindin 97.5 0.0001 2.2E-09 57.1 3.4 63 167-234 2-64 (65)
22 PLN00035 histone H4; Provision 97.5 8.5E-05 1.8E-09 62.6 3.1 67 166-237 28-94 (103)
23 PTZ00015 histone H4; Provision 97.4 0.00012 2.6E-09 61.6 2.7 72 160-236 23-94 (102)
24 smart00417 H4 Histone H4. 97.3 0.00023 5E-09 56.7 3.7 68 160-232 6-73 (74)
25 cd07979 TAF9 TATA Binding Prot 97.0 0.00087 1.9E-08 57.3 4.5 66 173-239 3-68 (117)
26 KOG0870|consensus 97.0 0.00046 9.9E-09 62.5 2.4 69 164-234 7-75 (172)
27 PF15630 CENP-S: Kinetochore c 96.7 0.0012 2.6E-08 52.8 2.4 66 173-238 7-74 (76)
28 PF03847 TFIID_20kDa: Transcri 96.4 0.0032 7E-08 49.3 3.2 58 178-235 6-63 (68)
29 smart00576 BTP Bromodomain tra 95.7 0.008 1.7E-07 47.4 2.5 47 189-235 23-69 (77)
30 KOG1142|consensus 95.6 0.013 2.9E-07 56.5 4.1 78 159-240 146-223 (258)
31 PF02969 TAF: TATA box binding 95.4 0.015 3.2E-07 45.4 3.1 59 176-235 8-66 (66)
32 PF15511 CENP-T: Centromere ki 94.7 0.023 4.9E-07 57.9 3.1 54 176-229 356-414 (414)
33 cd08050 TAF6 TATA Binding Prot 94.0 0.054 1.2E-06 53.7 3.9 65 175-240 3-67 (343)
34 PF02291 TFIID-31kDa: Transcri 93.9 0.048 1E-06 47.7 3.0 61 174-235 15-75 (129)
35 cd00074 H2A Histone 2A; H2A is 93.3 0.035 7.6E-07 47.7 1.1 72 165-240 18-89 (115)
36 smart00417 H4 Histone H4. 92.7 0.082 1.8E-06 42.2 2.3 55 56-115 13-67 (74)
37 cd00076 H4 Histone H4, one of 92.5 0.073 1.6E-06 43.5 1.8 55 56-115 13-67 (85)
38 smart00803 TAF TATA box bindin 92.3 0.13 2.9E-06 39.8 2.9 55 56-115 2-56 (65)
39 PLN00035 histone H4; Provision 92.2 0.084 1.8E-06 44.7 1.9 54 57-115 30-83 (103)
40 PF00808 CBFD_NFYB_HMF: Histon 92.0 0.19 4.2E-06 37.9 3.5 49 67-115 9-57 (65)
41 KOG0870|consensus 91.8 0.11 2.4E-06 47.4 2.2 60 53-114 7-66 (172)
42 PTZ00015 histone H4; Provision 89.6 0.2 4.4E-06 42.3 1.8 55 56-115 30-84 (102)
43 cd07979 TAF9 TATA Binding Prot 82.9 1.4 3.1E-05 37.6 3.5 53 62-115 3-55 (117)
44 PF07524 Bromo_TP: Bromodomain 81.1 1.3 2.9E-05 34.4 2.5 49 187-235 20-69 (77)
45 smart00576 BTP Bromodomain tra 80.7 2.2 4.9E-05 33.5 3.6 37 78-114 23-59 (77)
46 PF15511 CENP-T: Centromere ki 78.7 1.3 2.8E-05 45.4 2.1 52 64-115 355-411 (414)
47 KOG3334|consensus 76.0 4.2 9E-05 36.6 4.3 61 175-236 17-77 (148)
48 PLN00158 histone H2B; Provisio 70.1 8.1 0.00017 33.6 4.5 67 171-237 27-93 (116)
49 smart00427 H2B Histone H2B. 69.1 9.1 0.0002 31.8 4.5 65 173-237 3-67 (89)
50 PTZ00463 histone H2B; Provisio 66.9 9.8 0.00021 33.1 4.4 65 173-237 30-94 (117)
51 PF15630 CENP-S: Kinetochore c 64.3 6 0.00013 31.7 2.4 55 61-115 6-62 (76)
52 PF02269 TFIID-18kDa: Transcri 62.2 7 0.00015 32.1 2.6 61 175-235 5-65 (93)
53 PF05236 TAF4: Transcription i 61.0 6.6 0.00014 37.5 2.6 60 165-225 41-100 (264)
54 PF02969 TAF: TATA box binding 60.8 8.5 0.00019 30.1 2.7 49 65-114 8-56 (66)
55 PF10911 DUF2717: Protein of u 56.7 14 0.0003 30.1 3.3 60 154-216 2-64 (77)
56 cd08045 TAF4 TATA Binding Prot 55.6 17 0.00037 33.7 4.2 57 165-222 42-98 (212)
57 KOG0869|consensus 48.9 11 0.00025 34.4 1.9 68 165-235 30-97 (168)
58 PF03847 TFIID_20kDa: Transcri 47.9 19 0.00042 28.2 2.8 46 68-113 7-52 (68)
59 PF02291 TFIID-31kDa: Transcri 47.1 21 0.00047 31.3 3.3 51 63-114 15-65 (129)
60 COG5262 HTA1 Histone H2A [Chro 45.2 17 0.00036 32.0 2.3 57 184-240 39-95 (132)
61 cd08050 TAF6 TATA Binding Prot 43.7 21 0.00046 35.6 3.1 50 65-115 4-53 (343)
62 KOG1744|consensus 42.8 29 0.00063 30.7 3.4 58 180-237 46-103 (127)
63 PF05236 TAF4: Transcription i 42.8 16 0.00035 34.9 2.0 60 54-114 41-100 (264)
64 KOG0871|consensus 41.3 24 0.00052 32.0 2.7 69 164-235 9-77 (156)
65 cd08045 TAF4 TATA Binding Prot 38.6 28 0.0006 32.3 2.8 58 54-112 42-99 (212)
66 KOG3467|consensus 38.5 20 0.00043 30.1 1.6 46 189-234 46-91 (103)
67 PLN00154 histone H2A; Provisio 32.8 37 0.00079 30.4 2.5 74 165-241 36-109 (136)
68 PLN00156 histone H2AX; Provisi 31.3 18 0.00039 32.4 0.3 78 165-248 27-104 (139)
69 smart00414 H2A Histone 2A. 30.4 24 0.00053 29.9 1.0 72 165-240 7-78 (106)
70 PTZ00017 histone H2A; Provisio 30.3 22 0.00048 31.6 0.7 73 165-241 25-97 (134)
71 COG5094 TAF9 Transcription ini 28.9 39 0.00085 30.1 2.0 44 192-235 34-80 (145)
72 PF07524 Bromo_TP: Bromodomain 25.7 45 0.00098 25.8 1.7 39 75-113 19-58 (77)
73 COG5150 Class 2 transcription 23.4 75 0.0016 28.4 2.7 66 163-231 7-72 (148)
74 KOG2389|consensus 23.0 98 0.0021 31.7 3.8 58 177-235 35-92 (353)
75 KOG2549|consensus 21.5 76 0.0016 34.4 2.8 48 189-236 28-75 (576)
No 1
>PTZ00018 histone H3; Provisional
Probab=100.00 E-value=8.7e-48 Score=332.94 Aligned_cols=130 Identities=88% Similarity=1.245 Sum_probs=120.5
Q ss_pred cccccccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccccc
Q psy2783 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 189 (340)
Q Consensus 110 kRvtrKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~r 189 (340)
|..+.++.++++|+++.+.+...++.+.+++.++++||+||++||+|||+||+||+|||||+||+||||||++++.+++|
T Consensus 5 k~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~r 84 (136)
T PTZ00018 5 KQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84 (136)
T ss_pred CcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcCCcce
Confidence 34456777888889888887777777777888999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 190 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 190 fq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
||++||+|||||+|+|||+||||+|+||+||||||||++||+|+.+|.++
T Consensus 85 f~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 134 (136)
T PTZ00018 85 FQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_pred eeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999764
No 2
>PLN00121 histone H3; Provisional
Probab=100.00 E-value=1.6e-47 Score=331.23 Aligned_cols=130 Identities=90% Similarity=1.249 Sum_probs=120.9
Q ss_pred cccccccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccccc
Q psy2783 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 189 (340)
Q Consensus 110 kRvtrKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~r 189 (340)
|..++++.++++|+++.+.+...++.+..++.++++||+||++||+|||+||+||+|||||+||+||||||++++.+++|
T Consensus 5 k~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~R 84 (136)
T PLN00121 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84 (136)
T ss_pred CcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhCccce
Confidence 34456777888899888888777777777888999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 190 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 190 fq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
||++||+|||||+|+|||+||||+|+||+||||||||++||+|+.+|.++
T Consensus 85 f~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 134 (136)
T PLN00121 85 FQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_pred eeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999765
No 3
>PLN00161 histone H3; Provisional
Probab=100.00 E-value=2.4e-46 Score=323.05 Aligned_cols=122 Identities=58% Similarity=0.888 Sum_probs=108.3
Q ss_pred cccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc-ccccccH
Q psy2783 114 RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQS 192 (340)
Q Consensus 114 rKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~-~~~rfq~ 192 (340)
+++.+++.|++....+ ...++.++++||+||++||+|||+||+||+|||||+||+||||||++++. +++|||+
T Consensus 8 ~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~~~~~Rfq~ 81 (135)
T PLN00161 8 KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEMLREPFRWTA 81 (135)
T ss_pred ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcCCCCcEeeH
Confidence 4555666666654332 24456789999999999999999999999999999999999999999986 5899999
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcccc
Q psy2783 193 SAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLT 241 (340)
Q Consensus 193 ~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~ 241 (340)
+||+|||||+|+|||+||||+|+||+||||||||++||+|+.+|.+...
T Consensus 82 ~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~~ 130 (135)
T PLN00161 82 EALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPIY 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999987654
No 4
>KOG1745|consensus
Probab=100.00 E-value=4.5e-46 Score=321.55 Aligned_cols=131 Identities=85% Similarity=1.193 Sum_probs=121.9
Q ss_pred ccccccccCCCCCCcchhhhhhhcCC-CCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccc
Q psy2783 109 AKRTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD 187 (340)
Q Consensus 109 akRvtrKs~~~kAPRKqlAsk~~~ks-~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~ 187 (340)
.+.++++..++++|++..+.+...+. .+..+..++.+||+||+++|+|||+||+||||||+|+||+||||||+++|..|
T Consensus 4 ~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f~~d 83 (137)
T KOG1745|consen 4 TKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTD 83 (137)
T ss_pred CCcccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhccccc
Confidence 45677888999999999988887766 34456678899999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 188 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 188 ~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
+|||+.||.|||||+|+|||+||||+||||+|||||||||+||||+.+||+.
T Consensus 84 Lrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~ 135 (137)
T KOG1745|consen 84 LRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 135 (137)
T ss_pred ceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccC
Confidence 9999999999999999999999999999999999999999999999999975
No 5
>PLN00160 histone H3; Provisional
Probab=100.00 E-value=2.7e-44 Score=295.73 Aligned_cols=95 Identities=61% Similarity=0.937 Sum_probs=91.3
Q ss_pred CCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceec
Q psy2783 147 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 225 (340)
Q Consensus 147 ~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~-~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl 225 (340)
||||++||+|||+||+||+|||||+||+||||||++++. +++|||++||+|||||+|+|||+||||+|+||+|||||||
T Consensus 1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl 80 (97)
T PLN00160 1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTI 80 (97)
T ss_pred CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence 689999999999999999999999999999999999985 5699999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhcccc
Q psy2783 226 MPKDIHWPSQWCDNLT 241 (340)
Q Consensus 226 ~~kDm~L~~~i~~~~~ 241 (340)
|+|||+|+.+|.++.+
T Consensus 81 ~~kD~~L~~rirg~~~ 96 (97)
T PLN00160 81 MPKDMQLARRIRGQTR 96 (97)
T ss_pred chhhHHHHHHhhcccc
Confidence 9999999999987654
No 6
>smart00428 H3 Histone H3.
Probab=100.00 E-value=6.2e-44 Score=297.47 Aligned_cols=100 Identities=78% Similarity=1.099 Sum_probs=96.7
Q ss_pred CCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccc--cccccHHHHHHHHHHHHHHHHHhhhchhhhh
Q psy2783 140 GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCA 217 (340)
Q Consensus 140 ~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~--~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca 217 (340)
+.++++||+||++||+|||+||+||+|||||+||+||||||++++.+ ++|||++||+|||||+|+|||++|||+|+||
T Consensus 2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a 81 (105)
T smart00428 2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLA 81 (105)
T ss_pred CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred ccCCceecCCCCcchhhhhhcc
Q psy2783 218 IHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 218 ~HakRVTl~~kDm~L~~~i~~~ 239 (340)
+||||||||++||+|+.+||++
T Consensus 82 ~HAkRvTl~~kDi~La~rir~~ 103 (105)
T smart00428 82 IHAKRVTIMPKDIQLARRIRGE 103 (105)
T ss_pred HHhCCccCcHhhHHHHHHHhcc
Confidence 9999999999999999999975
No 7
>PTZ00018 histone H3; Provisional
Probab=100.00 E-value=3.9e-41 Score=291.55 Aligned_cols=115 Identities=92% Similarity=1.290 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccc
Q psy2783 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 80 (340)
Q Consensus 1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q 80 (340)
++++++|+++|+++.++++++++.+.+++.++++||+||+++|+|||+||+||+|||||+||+||||||++++.+++|||
T Consensus 7 ~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~rf~ 86 (136)
T PTZ00018 7 TARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 86 (136)
T ss_pred CccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcCCcceee
Confidence 36788899999999988888777777788899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 81 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 81 ~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
++||+|||||+|+|||+||||+|+||+|+||||..
T Consensus 87 ~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~ 121 (136)
T PTZ00018 87 SSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecc
Confidence 99999999999999999999999999999999985
No 8
>PLN00121 histone H3; Provisional
Probab=100.00 E-value=5.4e-41 Score=290.66 Aligned_cols=115 Identities=94% Similarity=1.294 Sum_probs=109.2
Q ss_pred CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccc
Q psy2783 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 80 (340)
Q Consensus 1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q 80 (340)
++++++|+++|+++.++++.+++.+..++.++++||+||+++|+|||+||+||+|||||+||+||||||++++.+++|||
T Consensus 7 ~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~Rf~ 86 (136)
T PLN00121 7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 86 (136)
T ss_pred CccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhCccceee
Confidence 36788999999999988888887777788899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 81 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 81 ~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
++||+|||||+|+|||+||||+|+||+|+||||..
T Consensus 87 ~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~ 121 (136)
T PLN00121 87 SSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 121 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecc
Confidence 99999999999999999999999999999999985
No 9
>PLN00161 histone H3; Provisional
Probab=100.00 E-value=1.3e-39 Score=281.31 Aligned_cols=107 Identities=60% Similarity=0.908 Sum_probs=97.2
Q ss_pred CCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc-cccccch
Q psy2783 3 RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQS 81 (340)
Q Consensus 3 ~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~-~~~r~q~ 81 (340)
+++++|++|++.+..+ ...++.++++||+||++||+|||+||+||+|||||+||+||||||++++. +++|||+
T Consensus 8 ~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~~~~~Rfq~ 81 (135)
T PLN00161 8 KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEMLREPFRWTA 81 (135)
T ss_pred ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcCCCCcEeeH
Confidence 5667888888776553 24466788999999999999999999999999999999999999999986 5899999
Q ss_pred HHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 82 SAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 82 ~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
+||+|||||+|+|||+||||+|+||+|+||||..
T Consensus 82 ~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm 115 (135)
T PLN00161 82 EALLALQEATEDFLVHLFEDCNLCAIHAKRVTIM 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999985
No 10
>KOG1745|consensus
Probab=100.00 E-value=6.8e-39 Score=277.01 Aligned_cols=115 Identities=90% Similarity=1.240 Sum_probs=107.7
Q ss_pred CCCCCCCCCCCCcchhhhhcccCC-CCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhccccccc
Q psy2783 1 TARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 79 (340)
Q Consensus 1 ta~k~~g~kaprk~~a~k~a~ks~-p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~ 79 (340)
+++++.++++|++..+.+..++.+ +..+...+++||+||+++|+|||+||+||||||+|+||+||||||.++|.+|+||
T Consensus 7 t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f~~dLrf 86 (137)
T KOG1745|consen 7 TARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTDLRF 86 (137)
T ss_pred ccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhccccccee
Confidence 467889999999999998887763 4456678899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 80 QSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 80 q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
|+.||.|||||+|+|||+||||+||||+||||||..
T Consensus 87 qs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTim 122 (137)
T KOG1745|consen 87 QSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM 122 (137)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchhhhccceeEec
Confidence 999999999999999999999999999999999986
No 11
>PLN00160 histone H3; Provisional
Probab=100.00 E-value=2.3e-36 Score=248.78 Aligned_cols=80 Identities=64% Similarity=0.975 Sum_probs=77.4
Q ss_pred cCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc-cccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 36 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 36 ~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~-~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
|+||++||+|||+||+||+|||||+||+||||||++++. +++|||++||+|||||||+|||+||||+|+||+||||||.
T Consensus 1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl 80 (97)
T PLN00160 1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTI 80 (97)
T ss_pred CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence 689999999999999999999999999999999999986 5699999999999999999999999999999999999998
Q ss_pred c
Q psy2783 115 K 115 (340)
Q Consensus 115 K 115 (340)
.
T Consensus 81 ~ 81 (97)
T PLN00160 81 M 81 (97)
T ss_pred c
Confidence 5
No 12
>smart00428 H3 Histone H3.
Probab=100.00 E-value=2.9e-36 Score=251.50 Aligned_cols=87 Identities=80% Similarity=1.126 Sum_probs=84.0
Q ss_pred CCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhccc--ccccchHHHHHHHHHHHHHhhhhcccccccc
Q psy2783 29 GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCA 106 (340)
Q Consensus 29 ~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~--~~r~q~~Al~ALQeAaEayLv~LFEds~lca 106 (340)
+.++++||+||++||+|||+||+||+|||||+||+||||||++++.+ ++|||.+|++|||||+|+|||++|||+|+||
T Consensus 2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a 81 (105)
T smart00428 2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLA 81 (105)
T ss_pred CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred ccccccccc
Q psy2783 107 IHAKRTARK 115 (340)
Q Consensus 107 iHakRvtrK 115 (340)
+||||||.+
T Consensus 82 ~HAkRvTl~ 90 (105)
T smart00428 82 IHAKRVTIM 90 (105)
T ss_pred HHhCCccCc
Confidence 999999985
No 13
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.85 E-value=5.8e-22 Score=161.93 Aligned_cols=85 Identities=46% Similarity=0.651 Sum_probs=81.5
Q ss_pred CCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCC
Q psy2783 149 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 228 (340)
Q Consensus 149 pg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~k 228 (340)
||.+.++|||+||++++++||++||.|++|+...+ ||+.+|+++||++.|.|++.++||++.||.|++|+||+++
T Consensus 1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~ 75 (91)
T COG2036 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAE 75 (91)
T ss_pred CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 68899999999999999999999999999999876 9999999999999999999999999999999999999999
Q ss_pred Ccchhhhhhc
Q psy2783 229 DIHWPSQWCD 238 (340)
Q Consensus 229 Dm~L~~~i~~ 238 (340)
||+|+..+.+
T Consensus 76 DI~la~~~~~ 85 (91)
T COG2036 76 DIKLALKRLG 85 (91)
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 14
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.72 E-value=3e-18 Score=132.27 Aligned_cols=75 Identities=41% Similarity=0.574 Sum_probs=71.8
Q ss_pred hhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 163 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 163 st~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
+++.+||+.||.|+++||..++..++||+.+|+++||+++|.|++.+||+|+.||.|+||+||+++||+++.+++
T Consensus 1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 477899999999999999999887799999999999999999999999999999999999999999999999875
No 15
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.66 E-value=3.7e-17 Score=133.76 Aligned_cols=73 Identities=51% Similarity=0.724 Sum_probs=70.9
Q ss_pred CCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 38 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 38 pg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
||..+++||++||++++++||++||.|++|+...+ ||+.+|+++||++.|.|++.++||++.||.|++|.|++
T Consensus 1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~ 73 (91)
T COG2036 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVK 73 (91)
T ss_pred CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence 68899999999999999999999999999999886 99999999999999999999999999999999999986
No 16
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.25 E-value=2.8e-12 Score=98.96 Aligned_cols=64 Identities=41% Similarity=0.563 Sum_probs=60.8
Q ss_pred chhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 52 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 52 st~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
+|+.+||+.||.|+++||..++..+++|+.+|+.+||++.|+|++.+||+++.||.|+||.|..
T Consensus 1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~ 64 (75)
T PF00125_consen 1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTIT 64 (75)
T ss_dssp HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEG
T ss_pred CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEec
Confidence 4678999999999999999998878999999999999999999999999999999999999975
No 17
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.88 E-value=1.6e-09 Score=84.71 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=51.7
Q ss_pred HHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 179 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 179 EI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
|++.+.....|++.+|.++||+.+|+|+.++++++..||.|++|.||+++||+|+..-
T Consensus 9 ~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 9 ELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred HHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4444445569999999999999999999999999999999999999999999999763
No 18
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=97.66 E-value=4.3e-05 Score=62.28 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=62.4
Q ss_pred hhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 161 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 161 Qkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
++.+---||+.|..||+|.- .--|+..++.+.|.++.|.||-++..|+..++-||+|-||...|+.+++.-.
T Consensus 7 ~~~~~~gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~ 78 (85)
T cd00076 7 LRDNIKGITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 78 (85)
T ss_pred HHHhhccCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHC
Confidence 34444459999999998753 3569999999999999999999999999999999999999999999987643
No 19
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=97.63 E-value=5e-05 Score=59.45 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=43.2
Q ss_pred hhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 62 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 62 F~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
-+.||++| ....+++.+|.++||+.+|+|+..+++++..||.|++|.|..
T Consensus 7 l~~lv~~i----d~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~ 56 (72)
T cd07981 7 LQELLKEI----DPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLE 56 (72)
T ss_pred HHHHHHhh----CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34455555 456999999999999999999999999999999999999864
No 20
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=97.50 E-value=9.3e-05 Score=56.09 Aligned_cols=55 Identities=27% Similarity=0.282 Sum_probs=46.3
Q ss_pred HHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchh
Q psy2783 179 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWP 233 (340)
Q Consensus 179 EI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~ 233 (340)
.|+....+..++..+|.++|+.|+|.|+..|-..++..+.+.+|-||++.|+..+
T Consensus 10 ri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~A 64 (65)
T PF00808_consen 10 RIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKA 64 (65)
T ss_dssp HHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHH
T ss_pred HHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 3344335567899999999999999999999999999999999999999998754
No 21
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=97.49 E-value=0.0001 Score=57.06 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=53.9
Q ss_pred hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS 234 (340)
Q Consensus 167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~ 234 (340)
.+|+.|..|+.+.+ + --|...+|..+|.+..|.++-++.+++..++-|++|-||+..|+.+++
T Consensus 2 ~~p~~~i~ria~~~----G-i~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Al 64 (65)
T smart00803 2 WLPKETIKDVAESL----G-IGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSAL 64 (65)
T ss_pred CCCHHHHHHHHHHC----C-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHh
Confidence 46667766666543 3 238999999999999999999999999999999999999999998875
No 22
>PLN00035 histone H4; Provisional
Probab=97.47 E-value=8.5e-05 Score=62.60 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=60.2
Q ss_pred hhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 166 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 166 lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
.=||+.|-.||+|.- .--|+..+|.+.|.++.|.||-.+..|+...+-||+|-||...|+.+++.-.
T Consensus 28 ~~ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~ 94 (103)
T PLN00035 28 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
T ss_pred ccCCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHc
Confidence 349999999998754 3569999999999999999999999999999999999999999999987643
No 23
>PTZ00015 histone H4; Provisional
Probab=97.37 E-value=0.00012 Score=61.61 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=62.2
Q ss_pred hhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 160 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 160 yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
.++...--||+.|-.||+|.- .--|+..++.+.|.++.|.||-.+..|+..+|-||+|-||...|+.+++.-
T Consensus 23 ~~r~~i~gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr 94 (102)
T PTZ00015 23 VLRDNIRGITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR 94 (102)
T ss_pred HHhhcccCCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 334444569999999998753 356999999999999999999999999999999999999999999998754
No 24
>smart00417 H4 Histone H4.
Probab=97.32 E-value=0.00023 Score=56.70 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=58.6
Q ss_pred hhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcch
Q psy2783 160 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232 (340)
Q Consensus 160 yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L 232 (340)
.++.+---||+.|..||+|. ..--|+..++.+.|.++.|.||-.+..|+..++-|++|-||...|+..
T Consensus 6 ~~~d~i~gI~k~~IrRLaRr-----~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 6 VLRDNIQGITKPAIRRLARR-----GGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred HHHhhhcCCCHHHHHHHHHH-----cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 33444446999999999874 245699999999999999999999999999999999999999999864
No 25
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=97.01 E-value=0.00087 Score=57.29 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=58.5
Q ss_pred hhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 173 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 173 F~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
..++|..|+.+.+ .-+++..+...|-|-+|.|...+..||...|-||+|-||...|++|+...+.+
T Consensus 3 d~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 3 DARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 3578888887763 45899999999999999999999999999999999999999999999876544
No 26
>KOG0870|consensus
Probab=96.95 E-value=0.00046 Score=62.55 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=64.1
Q ss_pred hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783 164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS 234 (340)
Q Consensus 164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~ 234 (340)
.+|.+|++--.|||+|++.+. ++-++.+|+.||++||--|+..|-..|+-.|.-.+|-||++.|+-=++
T Consensus 7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL 75 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKAL 75 (172)
T ss_pred HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHH
Confidence 478999999999999999886 789999999999999999999999999999999999999999985543
No 27
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=96.66 E-value=0.0012 Score=52.81 Aligned_cols=66 Identities=23% Similarity=0.190 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhc--cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhc
Q psy2783 173 FQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCD 238 (340)
Q Consensus 173 F~RLVrEI~~~~--~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~ 238 (340)
+.--|-.|+++. ..++.|++..+.||=|-+=.++..+=.|--..|-||+|-||++.|+.|..|-.+
T Consensus 7 l~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~ 74 (76)
T PF15630_consen 7 LWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNP 74 (76)
T ss_dssp HHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-H
T ss_pred HHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCC
Confidence 444566777775 368899999999999999999999999999999999999999999999987443
No 28
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=96.38 E-value=0.0032 Score=49.27 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=45.8
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 178 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 178 rEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
.|++.+...+..+..++.++|.+.|+.|+.+..+.|..+|-|.+-=||.++|+++++.
T Consensus 6 ~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 6 QELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 3444455678999999999999999999999999999999999999999999999875
No 29
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=95.67 E-value=0.008 Score=47.39 Aligned_cols=47 Identities=23% Similarity=0.204 Sum_probs=45.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 189 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 189 rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
+.+.+|+++|.+..|.||..+-+.+...+-|++|.+..+.|+.++..
T Consensus 23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998854
No 30
>KOG1142|consensus
Probab=95.60 E-value=0.013 Score=56.45 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=67.2
Q ss_pred hhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhc
Q psy2783 159 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCD 238 (340)
Q Consensus 159 ~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~ 238 (340)
.++-+++.++-|.-...||++| ..+--+..++-+.|.|.|++|+-++-.-+-.+|.|.|--||.++||+|++.--=
T Consensus 146 ~~~~~~~~il~k~kl~dLvqqI----d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~ 221 (258)
T KOG1142|consen 146 QDEPGNNPILSKRKLDDLVQQI----DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNF 221 (258)
T ss_pred cccCCCCccccccchhHHHHhh----cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccc
Confidence 6677888888888888888888 335567789999999999999999999999999999999999999999976433
Q ss_pred cc
Q psy2783 239 NL 240 (340)
Q Consensus 239 ~~ 240 (340)
||
T Consensus 222 Nm 223 (258)
T KOG1142|consen 222 NM 223 (258)
T ss_pred cc
Confidence 33
No 31
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=95.41 E-value=0.015 Score=45.44 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=46.4
Q ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 176 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 176 LVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
-|+.|++..+- -....++..+|-+-+|.-|-.+.++|..++.|+||-+|+..|+..+++
T Consensus 8 svk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 8 SVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 46667766542 147899999999999999999999999999999999999999988753
No 32
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=94.75 E-value=0.023 Score=57.94 Aligned_cols=54 Identities=33% Similarity=0.464 Sum_probs=41.6
Q ss_pred HHHHHHHhc-----cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCC
Q psy2783 176 LVREIAQDF-----KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229 (340)
Q Consensus 176 LVrEI~~~~-----~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kD 229 (340)
+||.+++.| ....++.++||+||+.|+|-|.-+|=+|--..|-||+|-||...|
T Consensus 356 ~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 356 VVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp HHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred HHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 455555554 357899999999999999999999999999999999999998765
No 33
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.01 E-value=0.054 Score=53.72 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=56.0
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 175 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 175 RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
..|+.|+...+ --+...+|..+|-+-+|.++-.+.++|..++.|+||-||+..||.++.+....-
T Consensus 3 ~~i~~ia~~~G-i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~e 67 (343)
T cd08050 3 ESIKLIAESLG-IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVE 67 (343)
T ss_pred hHHHHHHHHcC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCC
Confidence 35677777653 228899999999999999999999999999999999999999999998875443
No 34
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=93.95 E-value=0.048 Score=47.69 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=50.6
Q ss_pred hHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 174 ~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
.++|..|+.+.+- -.|+..++.-|-|=+=.|...+++||...+-||+|-+|...|++|+..
T Consensus 15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~ 75 (129)
T PF02291_consen 15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQ 75 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH
T ss_pred HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Confidence 4788888887752 247999999999999999999999999999999999999999999966
No 35
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=93.31 E-value=0.035 Score=47.66 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=62.1
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.|.+|-.++.|+.++= ....|...+|...|-..-|.+...++|-+...+-|.++-+|+|+|++|+.+=.++|
T Consensus 18 gL~fPV~ri~R~Lk~~----~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~nD~EL 89 (115)
T cd00074 18 GLQFPVGRIHRYLKKG----RYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDEEL 89 (115)
T ss_pred CccCcHHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhccHHH
Confidence 5789999999998752 12379999999999999999999999999999999999999999999996654544
No 36
>smart00417 H4 Histone H4.
Probab=92.73 E-value=0.082 Score=42.24 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=49.3
Q ss_pred hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
-||+.|..||+|.= .--|+..++.+.|.+..|.||-.+..|+..++-|++|-|.+
T Consensus 13 gI~k~~IrRLaRr~-----GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~ 67 (74)
T smart00417 13 GITKPAIRRLARRG-----GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVT 67 (74)
T ss_pred CCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 48999999999732 44699999999999999999999999999999999999875
No 37
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=92.52 E-value=0.073 Score=43.51 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=49.5
Q ss_pred hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
-||+.|..||+|.- .--|+..++.+++.++.|.||-.+..|+...+-|++|-|.+
T Consensus 13 gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt 67 (85)
T cd00076 13 GITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVT 67 (85)
T ss_pred cCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 38999999999743 35799999999999999999999999999999999998875
No 38
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=92.28 E-value=0.13 Score=39.76 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=44.4
Q ss_pred hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.+|+.|..|+.+. .+- -+...++..+|.+..|.++-.+.+|+..++-|+||.|.+
T Consensus 2 ~~p~~~i~ria~~----~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt 56 (65)
T smart00803 2 WLPKETIKDVAES----LGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLT 56 (65)
T ss_pred CCCHHHHHHHHHH----CCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 3566665565543 332 388899999999999999999999999999999998764
No 39
>PLN00035 histone H4; Provisional
Probab=92.25 E-value=0.084 Score=44.72 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=49.1
Q ss_pred hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
||+.|-.||+|.- .--|...++.++|.++.|.||-.+..|+...+-|++|-|.+
T Consensus 30 ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~ 83 (103)
T PLN00035 30 ITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVT 83 (103)
T ss_pred CCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 8999999999754 35699999999999999999999999999999999999875
No 40
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=91.99 E-value=0.19 Score=37.90 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 67 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 67 REI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
+.|+.......+...+|.++++.|+|.|+..|-.+++..+.+.+|-|..
T Consensus 9 kri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~ 57 (65)
T PF00808_consen 9 KRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTIT 57 (65)
T ss_dssp HHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-
T ss_pred HHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 3344433556789999999999999999999999999999988887753
No 41
>KOG0870|consensus
Probab=91.78 E-value=0.11 Score=47.41 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=54.4
Q ss_pred hhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 53 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 53 t~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
.+|.+|++--.|||+|++.++ +..++.+|+.|++.||--|+..|-..++-.|--.+|-|.
T Consensus 7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~ 66 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTI 66 (172)
T ss_pred HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 478999999999999999987 789999999999999999999999999988888887665
No 42
>PTZ00015 histone H4; Provisional
Probab=89.64 E-value=0.2 Score=42.32 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=49.1
Q ss_pred hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
-|++.|-.||+|.- .--|...++.+.+.+..|.||-.+..|+..+|-|++|-|.+
T Consensus 30 gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt 84 (102)
T PTZ00015 30 GITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVT 84 (102)
T ss_pred CCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 38999999998743 44699999999999999999999999999999999998875
No 43
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=82.94 E-value=1.4 Score=37.65 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=46.0
Q ss_pred hhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 62 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 62 F~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
..++|..|..+.+ .-+++.++...|-|-++.|...+..|+...|-||+|.|..
T Consensus 3 d~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~ 55 (117)
T cd07979 3 DARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANID 55 (117)
T ss_pred HHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3578888888763 3589999999999999999999999999999999996653
No 44
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=81.09 E-value=1.3 Score=34.45 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=44.9
Q ss_pred cc-cccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 187 DL-RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 187 ~~-rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
.| ..+.+||+.|-+.++.||..+-..+...+-|++|-...+.|+.++..
T Consensus 20 GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 20 GFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45 68999999999999999999999999999999999999999987653
No 45
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=80.69 E-value=2.2 Score=33.50 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=35.0
Q ss_pred ccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 78 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 78 r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
+.+.+|+++|.+..|.|+..|=+.+...+-|+.|.+.
T Consensus 23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~ 59 (77)
T smart00576 23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEP 59 (77)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8899999999999999999999999999999999764
No 46
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=78.71 E-value=1.3 Score=45.39 Aligned_cols=52 Identities=29% Similarity=0.429 Sum_probs=39.4
Q ss_pred HHHHHHHhhc-----ccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 64 RLVREIAQDF-----KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 64 RLVREI~~~~-----~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
-+|+.+++.| ....++..+||.||+.|+|-|+-+|=+|---.|-||+|-|+.
T Consensus 355 ~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTId 411 (414)
T PF15511_consen 355 GVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTID 411 (414)
T ss_dssp HHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-
T ss_pred cHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 3455555554 357899999999999999999999999999999999998874
No 47
>KOG3334|consensus
Probab=76.00 E-value=4.2 Score=36.62 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=50.2
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 175 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 175 RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
+++-.|+.+++ ---|....+.-|=|-+=.|.+++++||...+-||+.-||...|++|+..-
T Consensus 17 ~~i~~iL~s~G-I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~ 77 (148)
T KOG3334|consen 17 RVIASILKSLG-IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQM 77 (148)
T ss_pred HHHHHHHHHcC-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 45555665543 11366778888999999999999999999999999999999999999774
No 48
>PLN00158 histone H2B; Provisional
Probab=70.07 E-value=8.1 Score=33.60 Aligned_cols=67 Identities=10% Similarity=0.146 Sum_probs=46.6
Q ss_pred CchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 171 ~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
..|...+.-++.+...|..+...|+..+---..++.-.+-..+-.++..-+|-||.++|||-+.+++
T Consensus 27 esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 27 ETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred ccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 3455556666666677888999998776644444444444456667777899999999999887753
No 49
>smart00427 H2B Histone H2B.
Probab=69.07 E-value=9.1 Score=31.80 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=45.2
Q ss_pred hhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 173 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 173 F~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
|...+..++.+...|.-++..|+..+---.-++.-.+-..|-.++..-+|-||..+|||.+.+++
T Consensus 3 y~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 3 YAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred HHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 44455566666667889999999776643333333333456667777899999999999887763
No 50
>PTZ00463 histone H2B; Provisional
Probab=66.89 E-value=9.8 Score=33.14 Aligned_cols=65 Identities=6% Similarity=0.097 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 173 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 173 F~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
|...+..++.+...|..+...|+..+---..+++-.+-..+-.++..-+|-||..+|||-+.+++
T Consensus 30 y~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 30 YGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred HHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 55556666666677888999998776643333333333346666677799999999999998764
No 51
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=64.28 E-value=6 Score=31.73 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=44.9
Q ss_pred chhHHHHHHHhhc--ccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 61 PFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 61 pF~RLVREI~~~~--~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
-++.-|-.|+++- ..+..++...+.||-|-+=.++..+=.|-.+-|-||+|.|+.
T Consensus 6 al~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~ 62 (76)
T PF15630_consen 6 ALWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTIN 62 (76)
T ss_dssp HHHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-
T ss_pred HHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeec
Confidence 3455677777774 367899999999999999999999999999999999998875
No 52
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=62.22 E-value=7 Score=32.14 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 175 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 175 RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
.=|++++-.|++.-.=..+....+.+..=.||+.+...|..+|...++-.|.+.|+..+.+
T Consensus 5 ~eI~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 5 KEIRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp CCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 3345666666666666788899999999999999999999999999999999999988755
No 53
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=61.00 E-value=6.6 Score=37.50 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=38.9
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceec
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 225 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl 225 (340)
++++...|+..-+.+|+..++ ...+..+.+..|=-|+|.+|-+|+|++..++.|....-.
T Consensus 41 ~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~~~ 100 (264)
T PF05236_consen 41 EPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDSSK 100 (264)
T ss_dssp ---S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 457777889999999997765 567899999999999999999999999999999875533
No 54
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=60.80 E-value=8.5 Score=30.11 Aligned_cols=49 Identities=27% Similarity=0.286 Sum_probs=38.6
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 65 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 65 LVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
-|+.|+..++- -....++..+|-+-.|.-|-.+.+|+..++.|+||...
T Consensus 8 svk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~L 56 (66)
T PF02969_consen 8 SVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKL 56 (66)
T ss_dssp HHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB
T ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46777776542 24778999999999999999999999999999999764
No 55
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=56.67 E-value=14 Score=30.06 Aligned_cols=60 Identities=25% Similarity=0.440 Sum_probs=47.2
Q ss_pred hHHHHhhhhhhhhhccCCchhHHHHHHHHh-ccccccccHHHHHHHHHH--HHHHHHHhhhchhhh
Q psy2783 154 LREIRRYQKSTELLIRKLPFQRLVREIAQD-FKTDLRFQSSAVMALQEA--SEAYLVGLFEDTNLC 216 (340)
Q Consensus 154 lrEIr~yQkst~lLIpk~pF~RLVrEI~~~-~~~~~rfq~~Al~ALQeA--aEa~Lv~lFeda~lc 216 (340)
|++|.+|+...+ =||-.| |.+.|-++. |+.+|-.++..+.+|+.+ +|+||.++++..+.|
T Consensus 2 L~~I~h~l~np~-DiP~ip--ra~aeyLqvrfN~~yl~~sG~i~~lr~~G~SE~~I~Gfl~Gl~~A 64 (77)
T PF10911_consen 2 LKPIQHLLDNPD-DIPDIP--RAAAEYLQVRFNAAYLMASGIISALRKQGWSESYILGFLAGLQYA 64 (77)
T ss_pred cchHHHHhcCCc-ccCCcc--HHHHHHHHHHhcHHHHHHhhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 678988888764 355554 667776664 677888889999999865 899999999998887
No 56
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=55.57 E-value=17 Score=33.71 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=50.4
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 222 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakR 222 (340)
..++...|+.+-+..|+...+-. -+..+.+..|-.|+|.+|-++.++...++-|...
T Consensus 42 ~~fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~ 98 (212)
T cd08045 42 PSFLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRVD 98 (212)
T ss_pred hhccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 36888889999999999886533 7899999999999999999999999999999843
No 57
>KOG0869|consensus
Probab=48.87 E-value=11 Score=34.44 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=52.0
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
+-++|-+--.|+.+.++ ..+-.+..+|-+.+||.+-.|+-=+=..|.--.---||-||+..|+-+++.
T Consensus 30 Dr~LPIANV~RIMK~~l---P~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 30 DRFLPIANVSRIMKKAL---PANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hhhccHHHHHHHHHhcC---CcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34556666666655554 357789999999999999988877766666666678999999999998864
No 58
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=47.93 E-value=19 Score=28.18 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccc
Q psy2783 68 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTA 113 (340)
Q Consensus 68 EI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvt 113 (340)
|++.+..+...+..++.+.|.+-|+.|+-...+.+...|-|.+--|
T Consensus 7 ~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~t 52 (68)
T PF03847_consen 7 ELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSST 52 (68)
T ss_dssp HHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3334446678999999999999999999999999999999876543
No 59
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=47.08 E-value=21 Score=31.29 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=41.1
Q ss_pred hHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 63 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 63 ~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
.++|..|..+.+- -.|+..++.-|-|=+=.|...+++|+...|-||++.+.
T Consensus 15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i 65 (129)
T PF02291_consen 15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTI 65 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB
T ss_pred HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 5788888887652 24799999999999999999999999999999998654
No 60
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=45.16 E-value=17 Score=31.98 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=48.8
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 184 FKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 184 ~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
-...+|+.+.|..+|--.-|.....++|-+-..|---+--.|||+-+||+.+=.++|
T Consensus 39 ~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIrnD~EL 95 (132)
T COG5262 39 GNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRNDEEL 95 (132)
T ss_pred CccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhcCcHHH
Confidence 345789999999999999999899999999999999999999999999995443433
No 61
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=43.71 E-value=21 Score=35.59 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 65 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 65 LVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.|+.|+...+ --+...+|..+|-+-.|.++-.+.+++..+|.|+||.+.+
T Consensus 4 ~i~~ia~~~G-i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~ 53 (343)
T cd08050 4 SIKLIAESLG-IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLT 53 (343)
T ss_pred HHHHHHHHcC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 5777877653 2288899999999999999999999999999999997764
No 62
>KOG1744|consensus
Probab=42.80 E-value=29 Score=30.67 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 180 IAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 180 I~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
++.+...|+-+...|+..+---.-+++-.+-..++.+|-.-+|-||..++||.+-+++
T Consensus 46 vlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 46 VLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred hhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 4444445566788888766554444444444468999999999999999999988875
No 63
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=42.79 E-value=16 Score=34.89 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=39.0
Q ss_pred hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
++++...|++..+++|+..+. ...+..+.+..|=-|+|.+|-+|.|+....+.|....-.
T Consensus 41 ~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~~~ 100 (264)
T PF05236_consen 41 EPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDSSK 100 (264)
T ss_dssp ---S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 467788889999999997665 567889999999999999999999999999999766543
No 64
>KOG0871|consensus
Probab=41.34 E-value=24 Score=32.05 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=60.7
Q ss_pred hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
-++-+||+--..+|+||+. .|+||..+|-+.|++++=.|+--+=..||..+---.+-||.+.-+.=++.
T Consensus 9 de~sLPkAtv~KmIke~lP---~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe 77 (156)
T KOG0871|consen 9 DELSLPKATVNKMIKEMLP---KDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALE 77 (156)
T ss_pred ccccCcHHHHHHHHHHhCC---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHH
Confidence 4678999999999999865 38999999999999999999999999999999999999999988766643
No 65
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=38.60 E-value=28 Score=32.32 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=50.6
Q ss_pred hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccc
Q psy2783 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT 112 (340)
Q Consensus 54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRv 112 (340)
..++...|+.+.+..|+...+-. -+..+.+..|-.|+|.||.+|.++.-.|+-|....
T Consensus 42 ~~fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~~ 99 (212)
T cd08045 42 PSFLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRVDS 99 (212)
T ss_pred hhccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 46888899999999999986543 78999999999999999999999999999986443
No 66
>KOG3467|consensus
Probab=38.47 E-value=20 Score=30.06 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783 189 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS 234 (340)
Q Consensus 189 rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~ 234 (340)
|+---..+-...++..||-+...++...+-||||-||+.-|+--++
T Consensus 46 Ri~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~L 91 (103)
T KOG3467|consen 46 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYAL 91 (103)
T ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHH
Confidence 4444455666778889999999999999999999999998875543
No 67
>PLN00154 histone H2A; Provisional
Probab=32.79 E-value=37 Score=30.36 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=57.6
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLT 241 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~ 241 (340)
.|.+|-....|+.||-.. ...|+.+.|..-|--.-|....+++|-+...+-.-++-.|+|++++|+.+=.++|.
T Consensus 36 gL~FPVgRi~r~Lk~g~~---~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrnDeEL~ 109 (136)
T PLN00154 36 GLQFPVGRIHRQLKQRVS---AHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 109 (136)
T ss_pred CccCchHHHHHHHHhhhh---hccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccCcHHHH
Confidence 466666666777776431 13588888888888888999999999999999999999999999999955444443
No 68
>PLN00156 histone H2AX; Provisional
Probab=31.27 E-value=18 Score=32.36 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=57.6
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccccccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECS 244 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~~~~ 244 (340)
.|.+|-..+.|+.++- ....|+...|..-|--.-|.....++|-+...+..-+...|+|++++|+.+=.++| ..
T Consensus 27 gL~FPVgRi~R~Lk~g----~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrnDeEL--~~ 100 (139)
T PLN00156 27 GLQFPVGRIARFLKAG----KYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEEL--SK 100 (139)
T ss_pred CcccchHHHHHHHhcC----ChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccCcHHH--HH
Confidence 4566666666666552 22358888888888888888888999999998888899999999999995544444 34
Q ss_pred cccc
Q psy2783 245 TWQH 248 (340)
Q Consensus 245 ~~~~ 248 (340)
+|..
T Consensus 101 Ll~~ 104 (139)
T PLN00156 101 LLGS 104 (139)
T ss_pred HHCC
Confidence 4444
No 69
>smart00414 H2A Histone 2A.
Probab=30.39 E-value=24 Score=29.91 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=55.3
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
+|.+|-.-|.|+.++- ....|..+.|..-|=-.-|.....++|-+...+-.-++-.|+|+|++++.+=.++|
T Consensus 7 gL~fPVgRi~r~Lk~~----~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL 78 (106)
T smart00414 7 GLQFPVGRIHRLLRKG----TYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEEL 78 (106)
T ss_pred CccCchHHHHHHHHcC----ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHH
Confidence 4566666677776553 22458888888888888899999999988888888888999999999995543433
No 70
>PTZ00017 histone H2A; Provisional
Probab=30.32 E-value=22 Score=31.61 Aligned_cols=73 Identities=18% Similarity=0.138 Sum_probs=57.4
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLT 241 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~ 241 (340)
.|.+|-..+.|+.++-. ...|+.+.|..-|=-.-|.....++|-+...+-.-+.-.|+|++|+|+.+=.++|-
T Consensus 25 gL~FPVgRi~R~Lk~g~----~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~nDeEL~ 97 (134)
T PTZ00017 25 GLQFPVGRVHRYLKKGR----YAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELN 97 (134)
T ss_pred CcccchHHHHHHHhccc----hhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccCcHHHH
Confidence 46777777777776531 23488888888888888999999999999999889999999999999966555544
No 71
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.89 E-value=39 Score=30.05 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCC---CCcchhhh
Q psy2783 192 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMP---KDIHWPSQ 235 (340)
Q Consensus 192 ~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~---kDm~L~~~ 235 (340)
.....-|-+=|--|..+++|||.+.+-|++|--+.+ .|+.|+..
T Consensus 34 ~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~a 80 (145)
T COG5094 34 PKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALA 80 (145)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHH
Confidence 344455667788999999999999999998865555 99998854
No 72
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=25.70 E-value=45 Score=25.82 Aligned_cols=39 Identities=28% Similarity=0.269 Sum_probs=34.2
Q ss_pred ccc-ccchHHHHHHHHHHHHHhhhhccccccccccccccc
Q psy2783 75 TDL-RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTA 113 (340)
Q Consensus 75 ~~~-r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvt 113 (340)
..| ..+.+||+.|-+..+.||..|-..+...|-|+.|..
T Consensus 19 ~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~ 58 (77)
T PF07524_consen 19 AGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTE 58 (77)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345 688999999999999999999999988888888864
No 73
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=23.38 E-value=75 Score=28.39 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=55.0
Q ss_pred hhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcc
Q psy2783 163 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIH 231 (340)
Q Consensus 163 st~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~ 231 (340)
+-++-+||+--+.+|-+|+.. |+-|+.+|-+.+++|+=.||--|=..||..+-.-..-||-+.-+-
T Consensus 7 dDe~sLPKATVqKMvS~iLp~---dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHvi 72 (148)
T COG5150 7 DDENSLPKATVQKMVSSILPK---DLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVI 72 (148)
T ss_pred cccccCcHHHHHHHHHHhccc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 346678999999999998754 899999999999999999999888888877777777788776553
No 74
>KOG2389|consensus
Probab=22.96 E-value=98 Score=31.67 Aligned_cols=58 Identities=24% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 177 VREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 177 VrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
|-.|++... ---++..||+-|+-.+-.||-+|=++|...+-|++|+--...||-+++.
T Consensus 35 vaQIcqslg-~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~ 92 (353)
T KOG2389|consen 35 VAQICQSLG-YSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQ 92 (353)
T ss_pred HHHHHHhcC-CcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHH
Confidence 444555432 1257788999999999999999999999999999999999999977753
No 75
>KOG2549|consensus
Probab=21.52 E-value=76 Score=34.37 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=44.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 189 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 189 rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
....+|..+|-+=.|.-|-..-+|+-.++.|+||-++...|+.-+++.
T Consensus 28 nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~ 75 (576)
T KOG2549|consen 28 NLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRS 75 (576)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhh
Confidence 477899999999999999999999999999999999999999877764
Done!