Query psy2783
Match_columns 340
No_of_seqs 281 out of 989
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 16:46:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 1.9E-50 6.3E-55 348.7 3.0 132 108-239 3-134 (136)
2 2yfv_A Histone H3-like centrom 100.0 1.7E-45 5.7E-50 303.4 3.0 96 142-237 2-100 (100)
3 3r45_A Histone H3-like centrom 100.0 3.1E-44 1.1E-48 315.0 2.4 111 127-239 38-151 (156)
4 3nqu_A Histone H3-like centrom 100.0 8.6E-44 2.9E-48 308.1 3.7 109 129-239 24-135 (140)
5 1tzy_C Histone H3; histone-fol 100.0 5E-44 1.7E-48 308.7 1.8 115 1-115 7-121 (136)
6 2yfv_A Histone H3-like centrom 100.0 5.3E-38 1.8E-42 258.8 2.4 85 31-115 2-89 (100)
7 3r45_A Histone H3-like centrom 100.0 8.6E-37 2.9E-41 267.9 2.2 98 16-115 38-138 (156)
8 3nqu_A Histone H3-like centrom 100.0 1.5E-36 5E-41 263.0 2.8 96 18-115 24-122 (140)
9 2hue_B Histone H3; mini beta s 100.0 3.4E-34 1.2E-38 226.1 3.3 75 165-239 1-75 (77)
10 3nqj_A Histone H3-like centrom 100.0 8.8E-34 3E-38 226.2 2.8 74 166-239 2-77 (82)
11 2l5a_A Histone H3-like centrom 100.0 1.4E-31 4.9E-36 248.0 5.4 78 163-240 7-87 (235)
12 2ly8_A Budding yeast chaperone 99.9 6.1E-29 2.1E-33 210.9 5.4 110 56-238 1-113 (121)
13 2l5a_A Histone H3-like centrom 99.9 2.3E-28 8E-33 226.6 9.0 176 52-236 7-225 (235)
14 2hue_B Histone H3; mini beta s 99.9 8.4E-27 2.9E-31 184.0 2.5 62 54-115 1-62 (77)
15 3nqj_A Histone H3-like centrom 99.9 1.8E-26 6.2E-31 184.0 2.4 61 55-115 2-64 (82)
16 2ly8_A Budding yeast chaperone 99.9 3.2E-24 1.1E-28 182.0 5.6 55 167-221 1-58 (121)
17 1b67_A Protein (histone HMFA); 99.7 2.5E-18 8.5E-23 130.8 2.3 64 168-236 3-66 (68)
18 1ku5_A HPHA, archaeal histon; 99.5 8E-15 2.7E-19 112.3 2.4 64 167-235 6-69 (70)
19 1n1j_A NF-YB; histone-like PAI 99.3 1.7E-13 5.8E-18 110.2 1.5 71 162-235 3-73 (93)
20 1b67_A Protein (histone HMFA); 99.3 2.2E-13 7.6E-18 103.4 1.7 54 57-115 3-56 (68)
21 2r10_A Chromatin structure-rem 99.1 6.2E-12 2.1E-16 122.6 0.4 50 254-303 3-52 (361)
22 1f1e_A Histone fold protein; a 99.0 1.9E-10 6.4E-15 101.2 3.9 141 57-235 5-145 (154)
23 1ku5_A HPHA, archaeal histon; 98.9 2.4E-10 8.2E-15 87.4 1.8 55 56-115 6-60 (70)
24 1n1j_A NF-YB; histone-like PAI 98.8 1.4E-09 4.6E-14 87.4 1.2 62 51-115 3-64 (93)
25 2x4w_B Histone H3.2; transcrip 98.5 2.1E-08 7.1E-13 62.8 1.5 25 275-299 2-26 (26)
26 2yfw_B Histone H4, H4; cell cy 98.0 1.3E-06 4.4E-11 71.6 1.4 71 162-237 24-94 (103)
27 1tzy_D Histone H4-VI; histone- 98.0 1.4E-06 4.7E-11 71.4 1.5 71 162-237 24-94 (103)
28 1id3_B Histone H4; nucleosome 98.0 2E-06 6.8E-11 70.6 1.7 70 162-236 23-92 (102)
29 3b0c_T CENP-T, centromere prot 98.0 4.1E-06 1.4E-10 69.7 3.5 76 165-245 5-80 (111)
30 2hue_C Histone H4; mini beta s 97.9 3.3E-06 1.1E-10 66.8 1.3 70 162-236 5-74 (84)
31 3b0c_W CENP-W, centromere prot 97.7 5.4E-06 1.9E-10 64.3 0.9 66 166-235 3-68 (76)
32 2byk_B Chrac-14; nucleosome sl 97.6 1.8E-05 6.3E-10 67.3 2.4 74 164-240 6-79 (128)
33 4dra_A Centromere protein S; D 97.6 2.9E-05 1E-09 65.2 3.3 65 174-240 34-98 (113)
34 3v9r_A MHF1, uncharacterized p 97.6 2.6E-05 8.8E-10 63.0 2.5 68 173-240 14-83 (90)
35 1f1e_A Histone fold protein; a 97.5 2.3E-05 7.7E-10 68.9 1.6 63 168-234 5-67 (154)
36 1jfi_B DR1 protein, transcript 97.5 3E-05 1E-09 69.7 2.2 71 161-235 9-79 (179)
37 3vh5_A CENP-S; histone fold, c 97.5 5.8E-05 2E-09 65.5 3.2 67 176-242 24-92 (140)
38 1taf_A TFIID TBP associated fa 97.4 8.9E-05 3E-09 57.0 3.6 60 175-235 5-64 (68)
39 2r10_A Chromatin structure-rem 97.4 3E-05 1E-09 75.5 0.3 46 1-46 7-52 (361)
40 3avr_B Histone H3; cupin super 97.3 5.2E-05 1.8E-09 47.4 1.2 25 269-293 1-25 (26)
41 3b0b_B CENP-S, centromere prot 97.3 5.9E-05 2E-09 62.7 1.8 65 174-240 26-90 (107)
42 1n1j_B NF-YC; histone-like PAI 97.3 0.00017 5.9E-09 58.2 4.0 82 154-237 4-85 (97)
43 1taf_B TFIID TBP associated fa 97.2 0.00012 4.1E-09 56.6 2.0 64 167-235 6-69 (70)
44 4g92_C HAPE; transcription fac 97.2 0.00029 9.9E-09 59.0 4.3 74 165-239 36-109 (119)
45 2jss_A Chimera of histone H2B. 96.7 0.00094 3.2E-08 60.1 3.7 158 59-240 2-175 (192)
46 1h3o_B Transcription initiatio 96.4 0.0018 6.1E-08 50.8 3.3 66 167-236 5-70 (76)
47 2x4w_B Histone H3.2; transcrip 96.4 0.0011 3.8E-08 41.0 1.6 24 130-153 3-26 (26)
48 1jfi_A Transcription regulator 96.3 0.0014 4.7E-08 53.1 2.1 70 170-240 11-80 (98)
49 2byk_A Chrac-16; nucleosome sl 96.1 0.0032 1.1E-07 54.3 3.1 83 170-253 19-109 (140)
50 2k3y_A Chromatin modification- 96.0 0.0025 8.7E-08 54.9 2.1 25 270-294 111-136 (136)
51 1id3_B Histone H4; nucleosome 95.6 0.0042 1.4E-07 50.8 1.9 57 54-115 26-82 (102)
52 2hue_C Histone H4; mini beta s 95.3 0.006 2E-07 48.0 1.7 57 54-115 8-64 (84)
53 3b0c_T CENP-T, centromere prot 95.1 0.0091 3.1E-07 49.5 2.3 57 54-115 5-61 (111)
54 1tzy_D Histone H4-VI; histone- 95.0 0.007 2.4E-07 49.3 1.5 59 52-115 25-83 (103)
55 2nqb_D Histone H2B; nucleosome 94.9 0.023 8E-07 48.2 4.3 67 171-237 33-99 (123)
56 2yfw_B Histone H4, H4; cell cy 94.8 0.0068 2.3E-07 49.4 0.9 58 53-115 26-83 (103)
57 1tzy_B Histone H2B; histone-fo 94.8 0.025 8.4E-07 48.3 4.2 67 171-237 36-102 (126)
58 3a1b_A DNA (cytosine-5)-methyl 94.7 0.0053 1.8E-07 54.2 -0.0 20 253-272 1-20 (159)
59 2nqb_C Histone H2A; nucleosome 94.4 0.014 4.7E-07 49.3 1.8 73 164-240 20-92 (123)
60 1tzy_A Histone H2A-IV; histone 94.2 0.016 5.6E-07 49.3 1.8 73 164-240 22-94 (129)
61 2f8n_G Core histone macro-H2A. 94.2 0.014 4.9E-07 49.0 1.4 73 164-240 19-91 (120)
62 2byk_B Chrac-14; nucleosome sl 94.1 0.025 8.5E-07 47.9 2.7 60 53-115 6-65 (128)
63 3b0c_W CENP-W, centromere prot 94.0 0.017 5.8E-07 44.4 1.5 56 56-115 4-59 (76)
64 1jfi_B DR1 protein, transcript 93.9 0.021 7.1E-07 51.2 1.9 61 51-115 10-70 (179)
65 2f8n_K Histone H2A type 1; nuc 93.8 0.018 6.2E-07 50.3 1.3 73 164-240 41-113 (149)
66 1id3_C Histone H2A.1; nucleoso 93.6 0.017 6E-07 49.2 1.0 72 165-240 23-94 (131)
67 1f66_C Histone H2A.Z; nucleoso 93.2 0.058 2E-06 45.8 3.5 73 165-240 25-97 (128)
68 2jss_A Chimera of histone H2B. 91.7 0.17 5.9E-06 45.3 4.7 67 170-236 2-68 (192)
69 1taf_A TFIID TBP associated fa 91.6 0.15 5.3E-06 38.9 3.7 51 64-115 5-55 (68)
70 3v9r_A MHF1, uncharacterized p 91.1 0.12 4.2E-06 41.5 2.8 57 59-115 11-69 (90)
71 4dra_A Centromere protein S; D 90.9 0.15 5.2E-06 42.7 3.3 51 63-115 34-84 (113)
72 3b0b_B CENP-S, centromere prot 89.6 0.14 4.6E-06 42.4 1.9 54 62-115 21-76 (107)
73 3vh5_A CENP-S; histone fold, c 87.9 0.2 7E-06 43.3 1.9 54 62-115 21-76 (140)
74 1taf_B TFIID TBP associated fa 87.6 0.39 1.3E-05 36.8 3.2 54 57-115 7-60 (70)
75 4g92_C HAPE; transcription fac 86.6 0.49 1.7E-05 39.3 3.5 60 54-114 36-95 (119)
76 1n1j_B NF-YC; histone-like PAI 84.8 0.56 1.9E-05 37.5 2.9 71 43-115 4-74 (97)
77 3avr_B Histone H3; cupin super 75.7 1.2 4.3E-05 27.1 1.6 25 12-36 1-25 (26)
78 1jfi_A Transcription regulator 66.5 3.7 0.00013 32.8 2.9 56 59-115 11-66 (98)
79 2byk_A Chrac-16; nucleosome sl 56.6 4.2 0.00014 34.7 1.7 55 59-114 19-74 (140)
80 1h3o_B Transcription initiatio 55.6 6.1 0.00021 30.7 2.3 54 56-113 5-58 (76)
81 2k3y_A Chromatin modification- 28.3 26 0.00088 30.0 2.0 17 132-148 120-136 (136)
82 1tzy_B Histone H2B; histone-fo 21.5 62 0.0021 27.4 3.1 56 59-114 35-90 (126)
83 2nqb_D Histone H2B; nucleosome 21.0 66 0.0023 27.1 3.1 55 60-114 33-87 (123)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=1.9e-50 Score=348.75 Aligned_cols=132 Identities=91% Similarity=1.245 Sum_probs=91.8
Q ss_pred cccccccccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccc
Q psy2783 108 HAKRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD 187 (340)
Q Consensus 108 HakRvtrKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~ 187 (340)
+.|..+++++|+++|+++++.+.++++.|.+++.++++||+||+++|+|||+||+||+|||||+||+||||||+++|.++
T Consensus 3 Rtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~ 82 (136)
T 1tzy_C 3 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD 82 (136)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTT
T ss_pred CCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhh
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 188 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 188 ~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
+|||++||+|||||+|+|||+||||+|+||+||+|||||++||||+.+|+++
T Consensus 83 ~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 83 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999875
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=1.7e-45 Score=303.43 Aligned_cols=96 Identities=58% Similarity=0.910 Sum_probs=66.6
Q ss_pred CCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccc---cccccHHHHHHHHHHHHHHHHHhhhchhhhhc
Q psy2783 142 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 218 (340)
Q Consensus 142 ~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~---~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~ 218 (340)
++++||+||++||+|||+||+||+|||||+||+||||||++++.+ ++|||++||+|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred cCCceecCCCCcchhhhhh
Q psy2783 219 HAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 219 HakRVTl~~kDm~L~~~i~ 237 (340)
||||||||++||||+.+|.
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999873
No 3
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=315.01 Aligned_cols=111 Identities=48% Similarity=0.735 Sum_probs=73.1
Q ss_pred hhhhhcCCCCCCCCCCCC-CcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc--ccccccHHHHHHHHHHHH
Q psy2783 127 ATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASE 203 (340)
Q Consensus 127 Ask~~~ks~~~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaE 203 (340)
+.+++++++|.+|+++++ +||+||+ |+|||+||+||+|||||+||+||||||+++|+ .++|||++||+|||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 566788899999888766 7899998 99999999999999999999999999999997 589999999999999999
Q ss_pred HHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 204 AYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 204 a~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
+|||+||||+|+||+||||||||++||||+.+|.+.
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 999999999999999999999999999999999875
No 4
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=8.6e-44 Score=308.12 Aligned_cols=109 Identities=48% Similarity=0.739 Sum_probs=72.4
Q ss_pred hhhcCCCCCCCCCCCC-CcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc--ccccccHHHHHHHHHHHHHH
Q psy2783 129 KAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAY 205 (340)
Q Consensus 129 k~~~ks~~~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaEa~ 205 (340)
+++++++|.+|+++++ +||+||+ |+|||+||+||+|||||+||+||||||+++|+ .++|||++||+|||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 5678888888877665 4899998 99999999999999999999999999999997 58999999999999999999
Q ss_pred HHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 206 LVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 206 Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
||+||||+|+||+||||||||++||||+.+|.+.
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 9999999999999999999999999999999875
No 5
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=5e-44 Score=308.68 Aligned_cols=115 Identities=97% Similarity=1.308 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccc
Q psy2783 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 80 (340)
Q Consensus 1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q 80 (340)
||+|++||++|+|++++++++++.|.+++.++++||+||+++|+|||+||+||+||||++||+||||||+++|..++|||
T Consensus 7 tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q 86 (136)
T 1tzy_C 7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 86 (136)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEEC
T ss_pred ccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 81 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 81 ~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
++||+|||||+|+|||+||||+|+||+|+||||.+
T Consensus 87 ~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~ 121 (136)
T 1tzy_C 87 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 99999999999999999999999999999999985
No 6
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=5.3e-38 Score=258.76 Aligned_cols=85 Identities=60% Similarity=0.929 Sum_probs=56.0
Q ss_pred CCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhccc---ccccchHHHHHHHHHHHHHhhhhccccccccc
Q psy2783 31 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 107 (340)
Q Consensus 31 ~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~---~~r~q~~Al~ALQeAaEayLv~LFEds~lcai 107 (340)
++++||+||+++|+|||+||+||+|||||+||+||||||++++.+ ++|||++|++|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cccccccc
Q psy2783 108 HAKRTARK 115 (340)
Q Consensus 108 HakRvtrK 115 (340)
||||||.+
T Consensus 82 HAkRvTi~ 89 (100)
T 2yfv_A 82 HAKRITIM 89 (100)
T ss_dssp HTTCSEEC
T ss_pred HcCCccCC
Confidence 99999985
No 7
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=267.91 Aligned_cols=98 Identities=49% Similarity=0.733 Sum_probs=60.4
Q ss_pred hhhhcccCCCCCCCCCCC-cccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc--cccccchHHHHHHHHHHH
Q psy2783 16 ATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASE 92 (340)
Q Consensus 16 a~k~a~ks~p~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaE 92 (340)
+++++++++|.+|+.+++ +||+||+ |+|||+||+||+|||||+||+||||||+++|. .++|||.+||+|||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 466788888999887665 7899998 99999999999999999999999999999997 589999999999999999
Q ss_pred HHhhhhccccccccccccccccc
Q psy2783 93 AYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 93 ayLv~LFEds~lcaiHakRvtrK 115 (340)
+|||+||||+|+||+||||||.+
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm 138 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLF 138 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEC
T ss_pred HHHHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999986
No 8
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=1.5e-36 Score=262.95 Aligned_cols=96 Identities=49% Similarity=0.739 Sum_probs=60.4
Q ss_pred hhcccCCCCCCCCCCC-cccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc--cccccchHHHHHHHHHHHHH
Q psy2783 18 KAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAY 94 (340)
Q Consensus 18 k~a~ks~p~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEay 94 (340)
+++++++|.+|+.+++ +||+||+ |+|||+||+||+|||||+||+||||||+++|. .++|||++||+|||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 5677888888877655 5899998 99999999999999999999999999999997 58999999999999999999
Q ss_pred hhhhccccccccccccccccc
Q psy2783 95 LVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 95 Lv~LFEds~lcaiHakRvtrK 115 (340)
||+||||+|+||+||||||.+
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm 122 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLF 122 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHHHHcCccccc
Confidence 999999999999999999986
No 9
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=3.4e-34 Score=226.14 Aligned_cols=75 Identities=84% Similarity=1.128 Sum_probs=72.5
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
+|||||+||+||||||+++|++++|||++|++|||||+|+|||+||||+|+||+||||||||++||||+.+|+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999875
No 10
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.97 E-value=8.8e-34 Score=226.20 Aligned_cols=74 Identities=53% Similarity=0.819 Sum_probs=71.2
Q ss_pred hhccCCchhHHHHHHHHhcc--ccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 166 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 166 lLIpk~pF~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
|||||+||+||||||+++++ .++|||++|++|||||+|+|||+||||+|+||+||||||||++||||+.+|+++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHccc
Confidence 79999999999999999997 689999999999999999999999999999999999999999999999999876
No 11
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-31 Score=248.02 Aligned_cols=78 Identities=59% Similarity=0.892 Sum_probs=71.8
Q ss_pred hhhhhccCCchhHHHHHHHHhccc---cccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 163 STELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 163 st~lLIpk~pF~RLVrEI~~~~~~---~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
...|||||+||+||||||+++|.+ ++|||++||+|||||+|+|||+||||+|+||+||||||||||||||+.+|+++
T Consensus 7 ~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 7 HKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp ----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred cccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 456899999999999999999976 89999999999999999999999999999999999999999999999999875
Q ss_pred c
Q psy2783 240 L 240 (340)
Q Consensus 240 ~ 240 (340)
.
T Consensus 87 ~ 87 (235)
T 2l5a_A 87 F 87 (235)
T ss_dssp C
T ss_pred c
Confidence 4
No 12
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-29 Score=210.88 Aligned_cols=110 Identities=43% Similarity=0.625 Sum_probs=96.0
Q ss_pred hhccCchhHHHHHHHhhccc---ccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhc
Q psy2783 56 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAAR 132 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~---~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~ 132 (340)
||||+||+||||||++++.+ ++|||++||.|||||+|+|||+||||+||||+||.|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~--------------------- 59 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVP--------------------- 59 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC---------------------
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCc---------------------
Confidence 79999999999999999987 899999999999999999999999999999999911
Q ss_pred CCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhc
Q psy2783 133 KSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED 212 (340)
Q Consensus 133 ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFed 212 (340)
+|+ -|+..++-+.+-++.|.||-.+-.|
T Consensus 60 ------gGv----------------------------------------------kRIS~~iy~e~r~vl~~~l~~i~rd 87 (121)
T 2ly8_A 60 ------RGS----------------------------------------------KRISGLIYEEVRAVLKSFLESVIRD 87 (121)
T ss_dssp ------CCS----------------------------------------------SCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ------cCc----------------------------------------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1334455667778899999999999
Q ss_pred hhhhhccCCceecCCCCcchhhhhhc
Q psy2783 213 TNLCAIHAKRVTIMPKDIHWPSQWCD 238 (340)
Q Consensus 213 a~lca~HakRVTl~~kDm~L~~~i~~ 238 (340)
+...+-|++|-||+..|+.+++..-+
T Consensus 88 av~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 88 SVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp HHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 99999999999999999999977543
No 13
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.3e-28 Score=226.58 Aligned_cols=176 Identities=34% Similarity=0.504 Sum_probs=115.5
Q ss_pred chhhhhccCchhHHHHHHHhhccc---ccccchHHHHHHHHHHHHHhhhhccccccccccccccccccC---------CC
Q psy2783 52 STELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKST---------GG 119 (340)
Q Consensus 52 st~lLIpk~pF~RLVREI~~~~~~---~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~---------~~ 119 (340)
...|||||+||+||||||++++.+ ++|||++||.|||||+|+|||+||||+||||+||||||.... |.
T Consensus 7 ~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 7 HKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp ----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred cccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 346999999999999999999976 899999999999999999999999999999999999998531 11
Q ss_pred CC-Ccchhhhh-hhc--------------CCC--------CCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhH
Q psy2783 120 KA-PRKQLATK-AAR--------------KSA--------PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR 175 (340)
Q Consensus 120 kA-PRKqlAsk-~~~--------------ks~--------~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~R 175 (340)
.. |....... .+. .+. +.+|..-. ..|.. +.+. ...+.---.-+...
T Consensus 87 ~~~p~evme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~----dnGh~--~~l~---~~~~~~~~~~r~~~ 157 (235)
T 2l5a_A 87 FLVPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVE----DNGHI--KTLT---ANNSTKDKRTKYTS 157 (235)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCC----CCCCC--CSCC---CCCGGGCCSSTHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceee----eCcHH--HHhh---cCCCCCccchhHHH
Confidence 11 11100000 000 000 11111100 00100 0000 00000000023333
Q ss_pred HHHHHHHhc-------cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 176 LVREIAQDF-------KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 176 LVrEI~~~~-------~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
+.+++.+-. ..--|+..++.+.|-++.|.||-.+-.||..+|-||+|-||.+.|+.+++..
T Consensus 158 vLrD~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 158 VLRDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp HHHHHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 444443310 1346999999999999999999999999999999999999999999998764
No 14
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.92 E-value=8.4e-27 Score=184.00 Aligned_cols=62 Identities=89% Similarity=1.171 Sum_probs=59.9
Q ss_pred hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
+|||||+||+||||||++++++++|||++|+.|||||+|+|||+||||+|+||+|+||||.+
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~ 62 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 58999999999999999999999999999999999999999999999999999999999986
No 15
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.8e-26 Score=184.03 Aligned_cols=61 Identities=56% Similarity=0.835 Sum_probs=59.1
Q ss_pred hhhccCchhHHHHHHHhhcc--cccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 55 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 55 lLIpk~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
|||||+||+||||||+++++ .++|||++|+.|||||+|+|||+||||+|+||+||||||.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~ 64 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 64 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 79999999999999999997 68999999999999999999999999999999999999986
No 16
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.2e-24 Score=181.97 Aligned_cols=55 Identities=67% Similarity=1.005 Sum_probs=53.4
Q ss_pred hccCCchhHHHHHHHHhccc---cccccHHHHHHHHHHHHHHHHHhhhchhhhhccCC
Q psy2783 167 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 221 (340)
Q Consensus 167 LIpk~pF~RLVrEI~~~~~~---~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~Hak 221 (340)
||||+||+||||||++++++ ++|||++||.|||||+|+|||+||||+||||+||.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~ 58 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLV 58 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC
Confidence 79999999999999999987 89999999999999999999999999999999994
No 17
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.70 E-value=2.5e-18 Score=130.78 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=61.1
Q ss_pred ccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 168 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 168 Ipk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
||++||.||+||+ ++.||+.+|+++||+++|.|++.||+|||.||.|++|+||+++||+++.+-
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999998 579999999999999999999999999999999999999999999999753
No 18
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.48 E-value=8e-15 Score=112.34 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=60.5
Q ss_pred hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
.||+.||.||+|++ +..||+.+|+++|||++|.|+..+++|++.||.|++|.||+++|++|+.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 58999999999986 46899999999999999999999999999999999999999999999864
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.34 E-value=1.7e-13 Score=110.24 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=63.4
Q ss_pred hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
++++++||++++.|++|++.. ++.+|+.+|+++||+|+|.|+..|+++||.||.|++|.||+++|+.++..
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 467899999999999999854 36899999999999999999999999999999999999999999999975
No 20
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.33 E-value=2.2e-13 Score=103.37 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=51.8
Q ss_pred hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
||++||+||+|++ ++.+|+.+|+.+||+++|.|++.||+|+|.||.|+||+|..
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~ 56 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIK 56 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 7999999999999 57999999999999999999999999999999999999975
No 21
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.12 E-value=6.2e-12 Score=122.56 Aligned_cols=50 Identities=42% Similarity=0.525 Sum_probs=12.9
Q ss_pred chhhhccccCCCCCchhhhhhhhhhccCCCCCCCCCCCCCCCccchhhhH
Q psy2783 254 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI 303 (340)
Q Consensus 254 rtkq~arkstggkap~kqla~ka~~k~~p~~~gv~k~h~~rp~tval~ei 303 (340)
|||||||||||||+|+||+++|++++++|.++|++++|||||||+|+.|.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 79999999999999999999999999999999999999999999998775
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.99 E-value=1.9e-10 Score=101.17 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=114.0
Q ss_pred hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhcCCCC
Q psy2783 57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAP 136 (340)
Q Consensus 57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~ks~~ 136 (340)
+|+.|..|+.|+-+ .+.|...+|-++|+++.|.|+..+-.+++..|-|++|-|.+- --- ..+-..
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a-----~DV----~~a~~~-- 69 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLME-----EHL----KALADV-- 69 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECH-----HHH----HHHHHH--
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCH-----HHH----HHHHHh--
Confidence 67777778777654 348999999999999999999999999999999999999851 000 000000
Q ss_pred CCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhh
Q psy2783 137 ATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLC 216 (340)
Q Consensus 137 ~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lc 216 (340)
...-.|-..-++.||+.|..||.|+- ...|+..+|-++|+++.|.|+..+.++|+..
T Consensus 70 ------------------lg~~~v~d~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~ 126 (154)
T 1f1e_A 70 ------------------LMVEGVEDYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEY 126 (154)
T ss_dssp ------------------HTCTTSTTCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------cccccCCccccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111223356789999999999986 4679999999999999999999999999999
Q ss_pred hccCCceecCCCCcchhhh
Q psy2783 217 AIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 217 a~HakRVTl~~kDm~L~~~ 235 (340)
|-|++|-||.+.|+.++..
T Consensus 127 a~ha~RKTIt~eDV~~Al~ 145 (154)
T 1f1e_A 127 ADEDGRKTVQGEDVEKAIT 145 (154)
T ss_dssp HHHTTCSEECHHHHHHHHH
T ss_pred HHHcCCCccCHHHHHHHHH
Confidence 9999999999999999864
No 23
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.92 E-value=2.4e-10 Score=87.37 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=51.5
Q ss_pred hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
-||+.||.||+|++ ...||+.+|+++|||++|.|+..+++|++.||.|++|.|.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~ 60 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVK 60 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEC
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 48999999999986 46899999999999999999999999999999999999875
No 24
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.76 E-value=1.4e-09 Score=87.39 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=54.5
Q ss_pred cchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 51 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 51 kst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
++++++||++++.|+++++.. .+.+|+.+|..+||+|+|.|+..|++++|.||.|++|.|.+
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~ 64 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 64 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 467899999999999999854 36899999999999999999999999999999999999975
No 25
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=98.53 E-value=2.1e-08 Score=62.85 Aligned_cols=25 Identities=76% Similarity=1.055 Sum_probs=22.8
Q ss_pred hhhhccCCCCCCCCCCCCCCCccch
Q psy2783 275 KAARKSAPATGGVKKPHRYRPGTVA 299 (340)
Q Consensus 275 ka~~k~~p~~~gv~k~h~~rp~tva 299 (340)
|+++|++|.++|++++|||||||||
T Consensus 2 k~ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 2 KAARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred CccccCCCCCCccccccccccccCC
Confidence 5677889999999999999999997
No 26
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.01 E-value=1.3e-06 Score=71.61 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=59.0
Q ss_pred hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
++..--||+.+..||.+.. . .-|+..+|.++|++..|.|+.++.+||..+|-|++|-||++.|+.++++-.
T Consensus 24 r~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRG----G-VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp ------CCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3444459999999988754 2 259999999999999999999999999999999999999999999998743
No 27
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.00 E-value=1.4e-06 Score=71.42 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=61.7
Q ss_pred hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
++..--||+.+..||.+.. . .-|+..+|.++|++..|.|+.++.+||..+|-|++|-||++.|+.++++-.
T Consensus 24 r~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 24 RDNIQGITKPAIRRLARRG----G-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp CCGGGGSCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred hhhcccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3444459999988888754 2 259999999999999999999999999999999999999999999998743
No 28
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.96 E-value=2e-06 Score=70.62 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=61.6
Q ss_pred hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
+...--||+.+-.||++.. ..-|+..+|.++|+++.|.||.++.+||..++-|++|-||+..|+.+++.-
T Consensus 23 r~~i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp -CCGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 3444469999999998764 347999999999999999999999999999999999999999999999874
No 29
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.96 E-value=4.1e-06 Score=69.72 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=62.9
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccccccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECS 244 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~~~~ 244 (340)
++-||+..-.||+++- ...++..++.++|++++|.|+..+-.|++..|-||+|-||...|+.|+++--+.+....
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~ 79 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKM 79 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTB
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccc
Confidence 5678888888887775 46899999999999999999999999999999999999999999999988766665544
Q ss_pred c
Q psy2783 245 T 245 (340)
Q Consensus 245 ~ 245 (340)
.
T Consensus 80 ~ 80 (111)
T 3b0c_T 80 P 80 (111)
T ss_dssp C
T ss_pred c
Confidence 4
No 30
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.86 E-value=3.3e-06 Score=66.79 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=61.5
Q ss_pred hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
+...--||+.+-.||.+.. ..-|+..+|.++|++..|.|+-.+.+||..++-|++|-||+..|+.+++.-
T Consensus 5 r~~~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 3444568999988888754 347999999999999999999999999999999999999999999998774
No 31
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.75 E-value=5.4e-06 Score=64.25 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=59.9
Q ss_pred hhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 166 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 166 lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
..+|+++..|+++++.. +.++..+|.++|++++|.|+..|-..|+..+.|.+|-||.++|++.+..
T Consensus 3 ~~LP~A~V~rI~K~~~p----~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP----HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp -CCCHHHHHHHHHHHCT----TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC----CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 36799999999988753 6799999999999999999999999999999999999999999988765
No 32
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.63 E-value=1.8e-05 Score=67.30 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=62.3
Q ss_pred hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.++.+|.++-.|++++... +..++..+|..+|++|+|.|+..|=..|+..+.|.+|-||...|+..+..-.+.+
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 4678999999999988754 3689999999999999999999999999999999999999999999887765544
No 33
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.61 E-value=2.9e-05 Score=65.15 Aligned_cols=65 Identities=26% Similarity=0.380 Sum_probs=56.1
Q ss_pred hHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 174 ~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.|+|++...+ .+..+..+++.+|-|.+|.|+..+-.|+...|-||+|-||.+.|+.|+.+-...|
T Consensus 34 ~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L 98 (113)
T 4dra_A 34 GCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 98 (113)
T ss_dssp HHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHH
Confidence 4566665544 2577999999999999999999999999999999999999999999998865554
No 34
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=2.6e-05 Score=63.03 Aligned_cols=68 Identities=21% Similarity=0.129 Sum_probs=56.9
Q ss_pred hhHHHHHHHHhcc--ccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 173 FQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 173 F~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
+.--|-.|+++.. .++.+.++++.+|-|.+|.|+..+-.|+...|-||+|-||.+.|+.|+.+-...|
T Consensus 14 l~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 14 LWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp HHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 4444555555542 2478999999999999999999999999999999999999999999998865554
No 35
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.53 E-value=2.3e-05 Score=68.89 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=58.0
Q ss_pred ccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783 168 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS 234 (340)
Q Consensus 168 Ipk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~ 234 (340)
+|+.|..||+|+-+ +..|...+|-++|+++.|.|+..+-.+|+..|-|++|-||++.|+.++.
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 68888888887754 3589999999999999999999999999999999999999999999887
No 36
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.51 E-value=3e-05 Score=69.66 Aligned_cols=71 Identities=13% Similarity=0.251 Sum_probs=64.0
Q ss_pred hhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 161 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 161 Qkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
....++.+|+++-.|+++++.. +.++..+|.++|+++++.|+..|-..||..+.|.+|-||.+.||..++.
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3456789999999999999864 6899999999999999999999999999999999999999999999876
No 37
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.45 E-value=5.8e-05 Score=65.45 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=56.4
Q ss_pred HHHHHHHhc--cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccccc
Q psy2783 176 LVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTE 242 (340)
Q Consensus 176 LVrEI~~~~--~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~~ 242 (340)
-|-.|+++. ..++.+..+++.+|-|.+|.|+..+-.|+...|-||+|-||.+.|+.|+.+-...|-.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~ 92 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLK 92 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHH
Confidence 344444443 2468899999999999999999999999999999999999999999999887655543
No 38
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.43 E-value=8.9e-05 Score=56.99 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=53.7
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 175 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 175 RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
++|..|+.+.+- -+|+..+...|-|-+|.|...+.+|+..+|-||+|-||...|++|+..
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~ 64 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 566677776553 399999999999999999999999999999999999999999999865
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=97.36 E-value=3e-05 Score=75.51 Aligned_cols=46 Identities=46% Similarity=0.596 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhh
Q psy2783 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI 46 (340)
Q Consensus 1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEI 46 (340)
||+|++||++|++++++++++++.+.+++.++++||+||++++.|.
T Consensus 7 tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 7 TARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp --------------------------------CCSSCCSCCBCCCS
T ss_pred cccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 6899999999999999999998888888889999999999998765
No 40
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=97.35 E-value=5.2e-05 Score=47.44 Aligned_cols=25 Identities=84% Similarity=1.042 Sum_probs=23.1
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCCC
Q psy2783 269 RKQLATKAARKSAPATGGVKKPHRY 293 (340)
Q Consensus 269 ~kqla~ka~~k~~p~~~gv~k~h~~ 293 (340)
+|||++|++++++|.++||+|+||+
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 4799999999999999999999985
No 41
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.34 E-value=5.9e-05 Score=62.66 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=54.9
Q ss_pred hHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 174 ~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.|+|++...+ .+.++..+++.+|-|.++.|+..+-.|+...|-||+|-||...|+.|+.+--..+
T Consensus 26 ~rI~~~~g~~--~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 26 GCLCQDVAED--KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHH--HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHhhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 3455554432 3579999999999999999999999999999999999999999999998865444
No 42
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.29 E-value=0.00017 Score=58.23 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=55.8
Q ss_pred hHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchh
Q psy2783 154 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWP 233 (340)
Q Consensus 154 lrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~ 233 (340)
+.||+..- ..+.=-..+|-.|+ +-|+..-...-+...+|..+|..|+|.|+..|-+.|+.+|.|.+|-||.++|+.++
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 45666542 22333345666665 45565544446899999999999999999999999999999999999999999998
Q ss_pred hhhh
Q psy2783 234 SQWC 237 (340)
Q Consensus 234 ~~i~ 237 (340)
..=.
T Consensus 82 v~~~ 85 (97)
T 1n1j_B 82 ITKF 85 (97)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 5533
No 43
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.20 E-value=0.00012 Score=56.59 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=53.2
Q ss_pred hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ 235 (340)
Q Consensus 167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~ 235 (340)
.+|..|..++...+ +- -+...+|..+|-+-.|.++-++.++|..++-|+||-||+..||.++++
T Consensus 6 ~lp~~~v~~iaes~----Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAESI----GV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHHHT----TC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHC----CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 35555655554433 21 388999999999999999999999999999999999999999999865
No 44
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.17 E-value=0.00029 Score=59.03 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=62.8
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN 239 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~ 239 (340)
++=.+.+|-.| |+.|+..-.+.-++..+|..+|..|+|.|+..|.+.|+.+|...+|-||.++|+..+..=.+.
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~ 109 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDM 109 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCch
Confidence 33456789998 567777555567999999999999999999999999999999999999999999988654333
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.70 E-value=0.00094 Score=60.07 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=115.0
Q ss_pred cCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhcCCCCCC
Q psy2783 59 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAPAT 138 (340)
Q Consensus 59 k~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~ks~~~~ 138 (340)
+-.|.-.+..|..+...+..+..+|+.-|-.=.++++..+=..+.-++.|.+|.|..+. --+.+ .+.
T Consensus 2 ~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~-----eIq~A---vrl----- 68 (192)
T 2jss_A 2 KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAR-----EIQTA---VRL----- 68 (192)
T ss_dssp CSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHH-----HHHHH---HHH-----
T ss_pred cchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH-----HHHHH---HHH-----
Confidence 34577788888888888899999999999888888888888888888888888665310 00000 000
Q ss_pred CCCCCCCcCCCCchh-------hHHHHhhhhh---------hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHH
Q psy2783 139 GGVKKPHRYRPGTVA-------LREIRRYQKS---------TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEAS 202 (340)
Q Consensus 139 ~~~~~~~r~rpg~~a-------lrEIr~yQks---------t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAa 202 (340)
.=||..+ .+-+-+|..+ .+|.+|-.++.|+.++-. ....|+..+|-..|=..-
T Consensus 69 --------~lpgeLak~Av~eG~kAv~k~~~sk~~~s~s~ragl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavL 137 (192)
T 2jss_A 69 --------ILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVL 137 (192)
T ss_dssp --------HSCSHHHHHHHHHHHHHHHHHHHHCSSSCHHHHSSCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHH
T ss_pred --------hcCHHHHHHHHHHHHHHHHhhccccccccccccCCCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHH
Confidence 1122211 1123344332 267888888888876621 113689999999999999
Q ss_pred HHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 203 EAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 203 Ea~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
|.+...++|.+...|.|.++.+|.|+|++|+.+-.++|
T Consensus 138 Eyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL 175 (192)
T 2jss_A 138 EYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDEL 175 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHH
Confidence 99999999999999999999999999999997655554
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.45 E-value=0.0018 Score=50.79 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=59.0
Q ss_pred hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
+++|--.+.||++| .....+..++-++|.+-|+.|+-+..+.+..+|.|.+--||.++|++|++.-
T Consensus 5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 45677777888888 3468899999999999999999999999999999999999999999999764
No 47
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=96.42 E-value=0.0011 Score=40.99 Aligned_cols=24 Identities=75% Similarity=1.055 Sum_probs=19.2
Q ss_pred hhcCCCCCCCCCCCCCcCCCCchh
Q psy2783 130 AARKSAPATGGVKKPHRYRPGTVA 153 (340)
Q Consensus 130 ~~~ks~~~~~~~~~~~r~rpg~~a 153 (340)
.++++.|..++.++++||+||++|
T Consensus 3 ~ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 3 AARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred ccccCCCCCCccccccccccccCC
Confidence 345666777888899999999986
No 48
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.34 E-value=0.0014 Score=53.13 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.+|-.|+ +-|+..-.+.-+...+|...|-.|+|.|+..|.+.++.+|.|.+|-||.++|++++..-.+++
T Consensus 11 ~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l 80 (98)
T 1jfi_A 11 RFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDP 80 (98)
T ss_dssp CCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----
T ss_pred CCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchh
Confidence 4566665 455555444459999999999999999999999999999999999999999999986544433
No 49
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.06 E-value=0.0032 Score=54.33 Aligned_cols=83 Identities=10% Similarity=0.056 Sum_probs=52.9
Q ss_pred CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhh-ccCCceecCCCCcchhhh-------hhcccc
Q psy2783 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIHWPSQ-------WCDNLT 241 (340)
Q Consensus 170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca-~HakRVTl~~kDm~L~~~-------i~~~~~ 241 (340)
.+|-.|+ +.|+..-...-++..+|..++..|+|.|+-.|.+.|+.+| ...+|-||.++||..+.. +...++
T Consensus 19 ~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP 97 (140)
T 2byk_A 19 FLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVP 97 (140)
T ss_dssp -----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSC
T ss_pred CCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhcccc
Confidence 4455554 5666654445689999999999999999999999999999 999999999999988754 333344
Q ss_pred cccccccccccc
Q psy2783 242 ECSTWQHNSTMA 253 (340)
Q Consensus 242 ~~~~~~~~~~ma 253 (340)
....+..+-+|-
T Consensus 98 ~ki~l~~~~~~~ 109 (140)
T 2byk_A 98 QKIRVHQFQEML 109 (140)
T ss_dssp SCC---------
T ss_pred chhhHHHHHHHH
Confidence 444444444443
No 50
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0025 Score=54.91 Aligned_cols=25 Identities=72% Similarity=1.084 Sum_probs=22.2
Q ss_pred hhhhhhhh-hccCCCCCCCCCCCCCC
Q psy2783 270 KQLATKAA-RKSAPATGGVKKPHRYR 294 (340)
Q Consensus 270 kqla~ka~-~k~~p~~~gv~k~h~~r 294 (340)
|+|+.++. .|++|+++|||++||||
T Consensus 111 KeL~~kak~~Ks~p~tgGvkk~hr~r 136 (136)
T 2k3y_A 111 KRLANEAGSTGSAPATGGVXKPHRYR 136 (136)
T ss_dssp HHHHHHSCSCCCSTTCTTSCCCSSCC
T ss_pred HHHHHHHHhhccCCCCCCccCCCcCC
Confidence 67887775 78999999999999997
No 51
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.61 E-value=0.0042 Score=50.77 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=50.3
Q ss_pred hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.--||+.+-.||++.. ...|+..+|.++|++..|.|+..+-+|+..++-|++|-|.+
T Consensus 26 i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt 82 (102)
T 1id3_B 26 IQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVT 82 (102)
T ss_dssp GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 3448999988888764 34799999999999999999999999999999999998874
No 52
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=95.27 E-value=0.006 Score=47.98 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=49.7
Q ss_pred hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.--||+.+-.||+|.. ...|+..++.++|++..|.|+-.+-+|+..++-|++|-|.+
T Consensus 8 ~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt 64 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT 64 (84)
T ss_dssp CCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 3348898888888754 34799999999999999999999999999999999998875
No 53
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.08 E-value=0.0091 Score=49.48 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=46.6
Q ss_pred hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
++-||+..-.||+++- ...++..++.++|+++.+.|+..+-.|++..|-|++|-|++
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~ 61 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVE 61 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 5668888777777666 46899999999999999999999999999999999998875
No 54
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=95.03 E-value=0.007 Score=49.28 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=50.1
Q ss_pred chhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 52 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 52 st~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
+..--||+.+..||++.. . .-|+..+|.++|++..|.|+..+.+|+..+|-|++|.|.+
T Consensus 25 ~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt 83 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG----G-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT 83 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred hhcccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 333448999888888754 2 2599999999999999999999999999999999998874
No 55
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=94.88 E-value=0.023 Score=48.21 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=56.8
Q ss_pred CchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 171 ~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
..|...|.-|+.+...|..+...|+..|-.-.+++.-.+-..|..++.|.+|-||..+|||.+.+++
T Consensus 33 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 33 ESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 3356666666666677899999999999988888888888889999999999999999999998763
No 56
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=94.84 E-value=0.0068 Score=49.41 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=48.1
Q ss_pred hhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 53 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 53 t~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
..--||+.+..||++.. ..-|+..+|.++|++..|.|+..+.+|+..+|-|++|.|.+
T Consensus 26 ~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt 83 (103)
T 2yfw_B 26 NIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVT 83 (103)
T ss_dssp ----CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred hhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 33348999988888754 22599999999999999999999999999999999998874
No 57
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=94.79 E-value=0.025 Score=48.26 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC 237 (340)
Q Consensus 171 ~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~ 237 (340)
..|...|.-|+.+...|..+...|+..|-.-.+++.-.+-..|..++.|.+|-||..+|||.+.++.
T Consensus 36 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4466666667777777899999999999988888888888889999999999999999999998763
No 58
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.74 E-value=0.0053 Score=54.21 Aligned_cols=20 Identities=100% Similarity=1.232 Sum_probs=12.5
Q ss_pred cchhhhccccCCCCCchhhh
Q psy2783 253 ARTKQTARKSTGGKAPRKQL 272 (340)
Q Consensus 253 artkq~arkstggkap~kql 272 (340)
|||||+||||||||+|.||+
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-------CHHH
T ss_pred CccccccccccCCCcchHHH
Confidence 79999999999999999999
No 59
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=94.42 E-value=0.014 Score=49.35 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=62.2
Q ss_pred hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.+|.+|-.++.|+.++- ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus 20 agL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL 92 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 92 (123)
T ss_dssp HTCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHH
T ss_pred CCeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHH
Confidence 35778888888887653 22359999999999999999999999999999999999999999999997755555
No 60
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=94.19 E-value=0.016 Score=49.28 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=62.2
Q ss_pred hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.+|.+|-.++.|+.++- ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus 22 agLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL 94 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEEL 94 (129)
T ss_dssp HTCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHH
T ss_pred CceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHH
Confidence 35778888888887653 22359999999999999999999999999999999999999999999997655554
No 61
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=94.18 E-value=0.014 Score=49.02 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=62.8
Q ss_pred hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
..|.+|-.++.|+.++- ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus 19 agLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL 91 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEEL 91 (120)
T ss_dssp HTCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHH
T ss_pred cCccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHH
Confidence 36788888888888763 22359999999999999999999999999999999999999999999997655555
No 62
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=94.09 E-value=0.025 Score=47.94 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=49.0
Q ss_pred hhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 53 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 53 t~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.++.+|.++-.|++++... ...++..+|..+|++|+|.|+..|-..++..+.|.+|-|.+
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~ 65 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTIT 65 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 4678999999999887754 46899999999999999999999999999999999988764
No 63
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=94.03 E-value=0.017 Score=44.43 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=50.2
Q ss_pred hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.+|+++..|+++++.. +.++..+|.+++++++|.|+..|-..++-.+.|.+|-|.+
T Consensus 4 ~LP~A~V~rI~K~~~p----~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~ 59 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKP----HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIK 59 (76)
T ss_dssp CCCHHHHHHHHHHHCT----TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred cccccHHHHHHHHhCC----CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4788888999988753 5789999999999999999999999999999999998875
No 64
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.87 E-value=0.021 Score=51.24 Aligned_cols=61 Identities=10% Similarity=0.230 Sum_probs=53.5
Q ss_pred cchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 51 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 51 kst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
...++.+|+++-.|+++++.. +.++..+|.++|+++++.|+..|-..+|-.+.|.+|-|.+
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~ 70 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 70 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 445788999999999999864 6899999999999999999999999999988898888774
No 65
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=93.76 E-value=0.018 Score=50.27 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=62.1
Q ss_pred hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
..|.+|-.++.|+.++- ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus 41 agLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL 113 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEEL 113 (149)
T ss_dssp HTCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHH
T ss_pred CCeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHH
Confidence 36778888888887653 22359999999999999999999999999999999999999999999997755555
No 66
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=93.64 E-value=0.017 Score=49.22 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=60.6
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.|.+|-.++.|+.++- ....|+..+|-..|=.+-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL 94 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDEL 94 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHH
Confidence 5677777777776542 23359999999999999999999999999999999999999999999997755554
No 67
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=93.19 E-value=0.058 Score=45.81 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=61.8
Q ss_pred hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL 240 (340)
Q Consensus 165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~ 240 (340)
.|.+|-.++.|+.++-. ....|+..+|-..|=..-|.+...++|-+...|.|.++.+|.|+||+|+.+-.++|
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL 97 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHH
Confidence 57788888888876531 12358999999999999999999999999999999999999999999997766665
No 68
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=91.65 E-value=0.17 Score=45.28 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW 236 (340)
Q Consensus 170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i 236 (340)
+-.|.-.+.-|+.+...|..+..+|+.-|-.-.++++..+-..+..++.|.+|-||.++|||.+.++
T Consensus 2 ~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 2 KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp CSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 4457777888888777789999999999999999999999999999999999999999999998765
No 69
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=91.58 E-value=0.15 Score=38.87 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=44.2
Q ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 64 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 64 RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
++|..|..+.+-+ +++..+...|-|-+|.|...+.+|+..+|-||+|-|.+
T Consensus 5 ~~i~~iLk~~G~~-~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~ 55 (68)
T 1taf_A 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTID 55 (68)
T ss_dssp HHHHHHHHHTTCC-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHCCCc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5667777766543 99999999999999999999999999999999987654
No 70
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=91.08 E-value=0.12 Score=41.48 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=46.6
Q ss_pred cCchhHHHHHHHhhcc--cccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 59 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 59 k~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
|.-++--|-.|+++-. .+..+..+++.+|-|..|.|+..+-+|....|-||+|-|++
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~ 69 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVN 69 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 3445555666666542 23789999999999999999999999999999999999875
No 71
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=90.86 E-value=0.15 Score=42.65 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=43.1
Q ss_pred hHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 63 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 63 ~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.|+|++...+ .+..+..+++.+|-|.+|.|+..+-.|....|-||+|.|++
T Consensus 34 ~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~ 84 (113)
T 4dra_A 34 GCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTIN 84 (113)
T ss_dssp HHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 3555555443 25679999999999999999999999999999999999885
No 72
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=89.62 E-value=0.14 Score=42.45 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=43.6
Q ss_pred hhHHHHHHHhhcc--cccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 62 FQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 62 F~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
++--|-.|+.+.. .+.++..+++.+|-|.++.|...+-.|+...|-||+|-|++
T Consensus 21 l~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~ 76 (107)
T 3b0b_B 21 VHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTIT 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCC
Confidence 3334444444432 25699999999999999999999999999999999998875
No 73
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=87.86 E-value=0.2 Score=43.30 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=44.7
Q ss_pred hhHHHHHHHhhc--ccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 62 FQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 62 F~RLVREI~~~~--~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.+--|-.|+.+. ..+..+..+++.+|-|.+|.|+..+-.|....|-||+|-|++
T Consensus 21 l~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~ 76 (140)
T 3vh5_A 21 VHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTIT 76 (140)
T ss_dssp HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 344455555543 246789999999999999999999999999999999998875
No 74
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=87.65 E-value=0.39 Score=36.83 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=43.2
Q ss_pred hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
+|..|..+ |+.+.+- -+...+|..+|-+-.|.++-.+.+++..|+-|+||.+.+
T Consensus 7 lp~~~v~~----iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt 60 (70)
T 1taf_B 7 ISAESMKV----IAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLS 60 (70)
T ss_dssp CCHHHHHH----HHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCHHHHHH----HHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence 45555444 4444332 378899999999999999999999999999999998875
No 75
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=86.63 E-value=0.49 Score=39.32 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=49.5
Q ss_pred hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
+.=.+.+|..| |+.|+..-...-+...+|..++..|+|.|+..|.+.++.+|...+|-|.
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI 95 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTL 95 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 33456789988 6677775555679999999999999999999999999999887777665
No 76
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=84.76 E-value=0.56 Score=37.48 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=45.4
Q ss_pred hhhhhhhccchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 43 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 43 lrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
+.||+..- ..+.=-..+|-.|+ +-|+..-...-+...+|..++..|+|.|+..|-+.++.+|-|.+|.|.+
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~ 74 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQ 74 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 45666542 22333446677665 5566654444689999999999999999999999999999998887764
No 77
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=75.74 E-value=1.2 Score=27.14 Aligned_cols=25 Identities=84% Similarity=1.042 Sum_probs=19.1
Q ss_pred CcchhhhhcccCCCCCCCCCCCccc
Q psy2783 12 RKQLATKAARKSAPATGGVKKPHRY 36 (340)
Q Consensus 12 rk~~a~k~a~ks~p~~~~~~~~~r~ 36 (340)
+++++++++++++|..++.++++|.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 4677888888887888888777763
No 78
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=66.55 E-value=3.7 Score=32.78 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=42.7
Q ss_pred cCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783 59 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK 115 (340)
Q Consensus 59 k~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK 115 (340)
.+|-.|+ +-|+..-...-+...+|...+-.|.|.|+..|.+.++.+|.|.+|-+..
T Consensus 11 ~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~ 66 (98)
T 1jfi_A 11 RFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMT 66 (98)
T ss_dssp CCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred CCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence 4566665 5566654444599999999999999999999999999999988877653
No 79
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=56.59 E-value=4.2 Score=34.75 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=35.9
Q ss_pred cCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccc-cccccccc
Q psy2783 59 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRTAR 114 (340)
Q Consensus 59 k~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lca-iHakRvtr 114 (340)
.+|..| |+.|+..-...-....+|..++..|+|.|+-.|.+.++.++ ...+|-|.
T Consensus 19 ~LPlaR-IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI 74 (140)
T 2byk_A 19 FLPLSR-VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEAL 74 (140)
T ss_dssp -----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEE
T ss_pred CCCHHH-HHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 456665 46777655455689999999999999999999999998887 54444443
No 80
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=55.58 E-value=6.1 Score=30.66 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=45.9
Q ss_pred hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccc
Q psy2783 56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTA 113 (340)
Q Consensus 56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvt 113 (340)
++.|--.+.||++|. ....+..++-+.|.+-|+.|+-+..+.+...|-|.+--+
T Consensus 5 vl~k~~L~~Lv~~id----p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~ 58 (76)
T 1h3o_B 5 VLTKKKLQDLVREVD----PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSST 58 (76)
T ss_dssp SSCHHHHHHHHHHHC----SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 457777888888884 467899999999999999999999999999999977543
No 81
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=28.32 E-value=26 Score=29.95 Aligned_cols=17 Identities=82% Similarity=1.286 Sum_probs=14.8
Q ss_pred cCCCCCCCCCCCCCcCC
Q psy2783 132 RKSAPATGGVKKPHRYR 148 (340)
Q Consensus 132 ~ks~~~~~~~~~~~r~r 148 (340)
.+|+|.++++++++|||
T Consensus 120 ~Ks~p~tgGvkk~hr~r 136 (136)
T 2k3y_A 120 TGSAPATGGVXKPHRYR 136 (136)
T ss_dssp CCCSTTCTTSCCCSSCC
T ss_pred hccCCCCCCccCCCcCC
Confidence 46788999999999996
No 82
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=21.50 E-value=62 Score=27.35 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.0
Q ss_pred cCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 59 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 59 k~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
+-.|..-|..|+.+...|..+...|+..|-.=.++++-.+=.++.-++.|.+|.|.
T Consensus 35 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Ti 90 (126)
T 1tzy_B 35 KESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTI 90 (126)
T ss_dssp CCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred cccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34577777788888888999999999998777776666666666666666666665
No 83
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=20.99 E-value=66 Score=27.10 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=40.8
Q ss_pred CchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783 60 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR 114 (340)
Q Consensus 60 ~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr 114 (340)
-.|..-|..|+.+...|..+...|+..|-.=.++++-.+=..+.-++.|.+|.|.
T Consensus 33 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Ti 87 (123)
T 2nqb_D 33 ESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTI 87 (123)
T ss_dssp CCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred chHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 4567777777777888999999999988776666666666666666666666655
Done!