RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2783
(340 letters)
>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional.
Length = 136
Score = 222 bits (568), Expect = 2e-73
Identities = 115/122 (94%), Positives = 120/122 (98%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5 KQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65 KLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IH 231
I
Sbjct: 125 IQ 126
Score = 204 bits (520), Expect = 5e-66
Identities = 106/111 (95%), Positives = 110/111 (99%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7 TARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKL 66
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
PFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR
Sbjct: 67 PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKR 117
Score = 163 bits (415), Expect = 2e-50
Identities = 86/89 (96%), Positives = 88/89 (98%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MARTKQTARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89
>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional.
Length = 136
Score = 199 bits (507), Expect = 3e-64
Identities = 117/122 (95%), Positives = 121/122 (99%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIR
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
KLPFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65 KLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IH 231
I
Sbjct: 125 IQ 126
Score = 184 bits (467), Expect = 4e-58
Identities = 108/111 (97%), Positives = 111/111 (100%)
Query: 1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIRKL
Sbjct: 7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKL 66
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
PFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR
Sbjct: 67 PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKR 117
Score = 148 bits (375), Expect = 2e-44
Identities = 88/89 (98%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89
>gnl|CDD|128705 smart00428, H3, Histone H3.
Length = 105
Score = 160 bits (406), Expect = 3e-49
Identities = 79/94 (84%), Positives = 83/94 (88%), Gaps = 2/94 (2%)
Query: 139 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVM 196
GG K RYRPG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T DLRFQSSA+M
Sbjct: 1 GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIM 60
Query: 197 ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKDI
Sbjct: 61 ALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDI 94
Score = 144 bits (364), Expect = 5e-43
Identities = 71/86 (82%), Positives = 75/86 (87%), Gaps = 2/86 (2%)
Query: 28 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVM 85
GG K RYRPG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T DLRFQSSA+M
Sbjct: 1 GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIM 60
Query: 86 ALQEASEAYLVGLFEDTNLCAIHAKR 111
ALQEA+EAYLVGLFEDTNL AIHAKR
Sbjct: 61 ALQEAAEAYLVGLFEDTNLLAIHAKR 86
Score = 91.4 bits (227), Expect = 5e-23
Identities = 46/58 (79%), Positives = 48/58 (82%), Gaps = 2/58 (3%)
Query: 285 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSA 340
GG K RYRPG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T DLRFQSSA
Sbjct: 1 GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSA 58
>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional.
Length = 135
Score = 124 bits (313), Expect = 4e-35
Identities = 71/123 (57%), Positives = 90/123 (73%), Gaps = 7/123 (5%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
+ ++ GK P+K+ + ++ KKPHRYRPGTVALREIR+YQKSTELLIR
Sbjct: 4 RLQGKRFRKGKKPQKEASGVTRQELD------KKPHRYRPGTVALREIRKYQKSTELLIR 57
Query: 170 KLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 228
KLPF RLVREI+ + + R+ + A++ALQEA+E +LV LFED NLCAIHAKRVTIMPK
Sbjct: 58 KLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPK 117
Query: 229 DIH 231
D+
Sbjct: 118 DMQ 120
Score = 110 bits (275), Expect = 1e-29
Identities = 64/111 (57%), Positives = 81/111 (72%), Gaps = 7/111 (6%)
Query: 2 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP 61
++ GK P+K+ + ++ KKPHRYRPGTVALREIR+YQKSTELLIRKLP
Sbjct: 7 GKRFRKGKKPQKEASGVTRQELD------KKPHRYRPGTVALREIRKYQKSTELLIRKLP 60
Query: 62 FQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
F RLVREI+ + + R+ + A++ALQEA+E +LV LFED NLCAIHAKR
Sbjct: 61 FARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKR 111
Score = 77.7 bits (191), Expect = 1e-17
Identities = 45/78 (57%), Positives = 55/78 (70%), Gaps = 7/78 (8%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
MAR Q ++ GK P+K+ + ++ KKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARRLQ-GKRFRKGKKPQKEASGVTRQELD------KKPHRYRPGTVALREIRKYQKSTE 53
Query: 312 LLIRKLPFQRLVREIAQD 329
LLIRKLPF RLVREI+ +
Sbjct: 54 LLIRKLPFARLVREISNE 71
>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional.
Length = 97
Score = 110 bits (276), Expect = 3e-30
Identities = 58/85 (68%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Query: 148 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSAVMALQEASEAYL 206
RPG AL+EI+ YQKST+LLIR+LPF RLVREI + + R+Q SA++ALQEA+EA+L
Sbjct: 2 RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHL 61
Query: 207 VGLFEDTNLCAIHAKRVTIMPKDIH 231
VGLFED+NLCAIH KRVTIMPKD+
Sbjct: 62 VGLFEDSNLCAIHGKRVTIMPKDMQ 86
Score = 96.7 bits (240), Expect = 6e-25
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Query: 37 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSAVMALQEASEAYL 95
RPG AL+EI+ YQKST+LLIR+LPF RLVREI + + R+Q SA++ALQEA+EA+L
Sbjct: 2 RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHL 61
Query: 96 VGLFEDTNLCAIHAKR 111
VGLFED+NLCAIH KR
Sbjct: 62 VGLFEDSNLCAIHGKR 77
Score = 52.4 bits (125), Expect = 6e-09
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 294 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSA 340
RPG AL+EI+ YQKST+LLIR+LPF RLVREI + + R+Q SA
Sbjct: 2 RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSA 49
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and
dynamics].
Length = 91
Score = 97.8 bits (244), Expect = 2e-25
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 149 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 208
PG V L+EIRRYQ+ST+LL+ K P +R++R+ + R SSA+ LQEA E YL
Sbjct: 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEE 55
Query: 209 LFEDTNLCAIHAKRVTIMPKDI 230
+ ED A HAKR T+ +DI
Sbjct: 56 IAEDAVELAEHAKRKTVKAEDI 77
Score = 85.1 bits (211), Expect = 9e-21
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 38 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 97
PG V L+EIRRYQ+ST+LL+ K P +R++R+ + R SSA+ LQEA E YL
Sbjct: 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEE 55
Query: 98 LFEDTNLCAIHAKR 111
+ ED A HAKR
Sbjct: 56 IAEDAVELAEHAKR 69
Score = 49.2 bits (118), Expect = 8e-08
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
Query: 295 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
PG V L+EIRRYQ+ST+LL+ K P +R++R+ + R SSA
Sbjct: 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSA 41
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4.
Length = 75
Score = 96.9 bits (242), Expect = 2e-25
Identities = 37/69 (53%), Positives = 45/69 (65%)
Query: 163 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 222
S+ LLI KLPF R+VRE+ + F +LR S A +ALQEA E L + ED L A HAKR
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 223 VTIMPKDIH 231
TI P+DI
Sbjct: 61 KTITPRDIQ 69
Score = 80.7 bits (200), Expect = 2e-19
Identities = 32/61 (52%), Positives = 39/61 (63%)
Query: 52 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
S+ LLI KLPF R+VRE+ + F +LR S A +ALQEA E L + ED L A HAKR
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 112 T 112
Sbjct: 61 K 61
Score = 42.9 bits (102), Expect = 8e-06
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
S+ LLI KLPF R+VRE+ + F +LR S A
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKA 32
>gnl|CDD|241015 cd12571, RRM6_RBM19, RNA recognition motif 6 in RNA-binding
protein 19 (RBM19) and similar proteins. This subgroup
corresponds to the RRM6 of RBM19, also termed
RNA-binding domain-1 (RBD-1), which is a nucleolar
protein conserved in eukaryotes. It is involved in
ribosome biogenesis by processing rRNA. In addition, it
is essential for preimplantation development. RBM19 has
a unique domain organization containing 6 conserved RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains). .
Length = 79
Score = 28.1 bits (63), Expect = 1.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 53 TELLIRKLPFQRLVREIAQDFKT 75
+++L+R +PF+ V+E+ + F T
Sbjct: 1 SKILVRNIPFEATVKELRELFST 23
Score = 28.1 bits (63), Expect = 1.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 164 TELLIRKLPFQRLVREIAQDFKT 186
+++L+R +PF+ V+E+ + F T
Sbjct: 1 SKILVRNIPFEATVKELRELFST 23
Score = 28.1 bits (63), Expect = 1.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 310 TELLIRKLPFQRLVREIAQDFKT 332
+++L+R +PF+ V+E+ + F T
Sbjct: 1 SKILVRNIPFEATVKELRELFST 23
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 30.3 bits (69), Expect = 1.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 93
E LI K+ F R+ ++A+ K R+Q AV+AL A
Sbjct: 368 EPLIGKVRFSRIGIKLAETHKKGYRWQHEAVIALASPDNA 407
Score = 30.3 bits (69), Expect = 1.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 204
E LI K+ F R+ ++A+ K R+Q AV+AL A
Sbjct: 368 EPLIGKVRFSRIGIKLAETHKKGYRWQHEAVIALASPDNA 407
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 30.0 bits (67), Expect = 2.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 146
K A+K KAP K++A K A K A K R
Sbjct: 1014 KAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGR 1050
Score = 30.0 bits (67), Expect = 2.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 256 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 292
K A+K KAP K++A K A K A K R
Sbjct: 1014 KAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGR 1050
Score = 29.6 bits (66), Expect = 2.9
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 106 AIHAKRTARKSTGGKAP------RKQLATKAARKSAPATGGVKKPHR 146
A K+ A+K+ KA +K A K K APA +KP
Sbjct: 990 AAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAA 1036
Score = 28.4 bits (63), Expect = 7.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 35
A+K KAP K++A K A K A K R
Sbjct: 1017 AKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGR 1050
Score = 28.0 bits (62), Expect = 8.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 253 ARTKQTARKSTGGKAP------RKQLATKAARKSAPATGGVKKPHR 292
A K+ A+K+ KA +K A K K APA +KP
Sbjct: 991 AMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAA 1036
>gnl|CDD|153337 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein
4 and similar proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. This subfamily is composed of
Cdc42-Interacting Protein 4 (CIP4), Formin Binding
Protein 17 (FBP17), FormiN Binding Protein 1-Like
(FNBP1L), and similar proteins. CIP4 and FNBP1L are
Cdc42 effectors that bind Wiskott-Aldrich syndrome
protein (WASP) and function in endocytosis. CIP4 and
FBP17 bind to the Fas ligand and may be implicated in
the inflammatory response. CIP4 may also play a role in
phagocytosis. Members of this subfamily typically
contain an N-terminal F-BAR domain and a C-terminal SH3
domain. In addition, some members such as FNBP1L contain
a central Cdc42-binding HR1 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 251
Score = 28.4 bits (64), Expect = 5.6
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 178 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
++ Q F + Q + E L + + I AK + + K
Sbjct: 201 TDLPQIFD---KLQELDEKRINRTVELLLQAAEIERKVIPIIAKCLDGIKKAG 250
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase.
Length = 545
Score = 28.3 bits (63), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 75 TDLRFQSSAVMALQEASEAYLVGLFEDTNL 104
T L + ++AL EA + Y+V + ED +L
Sbjct: 178 TALIYHHGKLLALSEADKPYVVKVLEDGDL 207
Score = 28.3 bits (63), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 186 TDLRFQSSAVMALQEASEAYLVGLFEDTNL 215
T L + ++AL EA + Y+V + ED +L
Sbjct: 178 TALIYHHGKLLALSEADKPYVVKVLEDGDL 207
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 27.7 bits (62), Expect = 9.4
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 87 LQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAPAT 138
+ + L + K+ A+K+T KA +K A KAA K A T
Sbjct: 240 PASITLEEALELLAERRAKGGPGKKPAKKATAAKA-KKTTAKKAAAKKAAKT 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.130 0.372
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,032,061
Number of extensions: 1606162
Number of successful extensions: 1501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1472
Number of HSP's successfully gapped: 71
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)