RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2783
(340 letters)
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 152 bits (386), Expect = 3e-47
Identities = 84/85 (98%), Positives = 84/85 (98%)
Query: 147 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 206
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60
Query: 207 VGLFEDTNLCAIHAKRVTIMPKDIH 231
VGLFEDTNLCAIHAKRVTIMPKDI
Sbjct: 61 VGLFEDTNLCAIHAKRVTIMPKDIQ 85
Score = 135 bits (342), Expect = 1e-40
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 36 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 95
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60
Query: 96 VGLFEDTNLCAIHAKR 111
VGLFEDTNLCAIHAKR
Sbjct: 61 VGLFEDTNLCAIHAKR 76
Score = 88.7 bits (220), Expect = 8e-23
Identities = 48/48 (100%), Positives = 48/48 (100%)
Query: 293 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 48
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 50.6 bits (121), Expect = 2e-08
Identities = 20/174 (11%), Positives = 40/174 (22%), Gaps = 42/174 (24%)
Query: 61 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGK 120
+R+ R+ + R A + + + + +
Sbjct: 6 AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKK-------- 53
Query: 121 APRKQLATKAAR--KSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVR 178
T K+ V+ Y L + +R+++
Sbjct: 54 -------TLMEEHLKALADVLMVEGVEDYD----------------GELFGRATVRRILK 90
Query: 179 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
R S AV + L E A R T+ +D+
Sbjct: 91 R-----AGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEK 139
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 37.4 bits (87), Expect = 1e-04
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
LP + R I + R A L E E Y + + + A HA R T+ +DI
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 231 HW 232
Sbjct: 61 KL 62
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 34.3 bits (79), Expect = 0.001
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 189 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
R A +AL + E + + A HA R TI +DI
Sbjct: 20 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 34.8 bits (80), Expect = 0.002
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
LP + R + + A +QE ++ + + + KR TI +DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 231 HW 232
+
Sbjct: 63 LF 64
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 34.5 bits (79), Expect = 0.006
Identities = 7/63 (11%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
+P + ++ ++ ++R + A + ++ + + N +++ TI P+ +
Sbjct: 5 IPRAA-INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 63
Query: 231 HWP 233
Sbjct: 64 IQA 66
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 32.8 bits (75), Expect = 0.031
Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 153 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED 212
A I + ++ L + L++E+ + + + E + +
Sbjct: 85 AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGY-----KIDHQVSVYIVAVLEYISADILKL 139
Query: 213 TNLCAIHAKRVTIMPKDIHW 232
+ + I +DI
Sbjct: 140 AGNYVRNIRHYEITKQDIKV 159
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 29.4 bits (66), Expect = 0.15
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
RL++E + A A+ A+ + + + + A TI KDI
Sbjct: 6 GRLIKEALPE---SASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQ 61
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 27.8 bits (62), Expect = 0.42
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 189 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
R + + +L + D HAKR T+ D+
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDV 67
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.2 bits (58), Expect = 1.4
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
+ P R +++I Q + + ++ + + A E +L L + T+
Sbjct: 2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 60
Query: 230 I 230
+
Sbjct: 61 L 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.130 0.372
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,191,369
Number of extensions: 53458
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 12
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)