Query psy2786
Match_columns 198
No_of_seqs 137 out of 965
Neff 8.0
Searched_HMMs 13730
Date Fri Aug 16 16:50:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2786.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2786hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a1 c.55.3.1 (A:430-555) H 99.4 4.6E-14 3.3E-18 101.9 4.4 60 14-74 60-125 (126)
2 d1rila_ c.55.3.1 (A:) RNase H 99.1 3.6E-12 2.6E-16 93.9 1.1 71 3-77 53-143 (147)
3 d1jl1a_ c.55.3.1 (A:) RNase H 99.1 4.1E-12 3E-16 93.6 1.1 32 46-77 110-141 (152)
4 d1s1ta1 c.55.3.1 (A:430-539) H 97.3 2.7E-05 2E-09 53.7 1.5 44 14-58 61-110 (110)
5 d1zbfa1 c.55.3.1 (A:62-193) BH 80.5 0.11 7.8E-06 36.1 -0.9 63 3-68 54-131 (132)
6 d1neea2 g.59.1.1 (A:99-135) Zi 23.5 14 0.001 19.1 1.1 14 160-173 23-37 (37)
7 d1dsqa_ g.40.1.1 (A:) Nucleic 22.3 12 0.00089 17.2 0.5 8 159-166 2-10 (26)
8 d1x64a2 g.39.1.3 (A:53-83) PDZ 21.5 26 0.0019 17.1 1.7 23 161-183 1-30 (31)
9 d1y0ja1 g.39.1.1 (A:200-238) E 18.7 29 0.0021 18.0 1.7 12 159-170 2-14 (39)
10 d1ak2a2 g.41.2.1 (A:147-176) M 16.7 36 0.0026 16.5 1.7 18 150-167 8-26 (30)
No 1
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.42 E-value=4.6e-14 Score=101.87 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=43.3
Q ss_pred CCeEEEEecchhhhccCCCC-CCch--hH-H--HHHHHhCCeEEEEEecCCCCCCcchHHHHHHhCC
Q psy2786 14 PTYSLLFPDNIDADIYPPNK-PKPL--CL-R--VHLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 74 (198)
Q Consensus 14 ~~~~~i~sDn~aa~i~~~~~-~~~~--~~-~--~~l~~~~~~i~l~WvPgH~gI~GNE~AD~aAk~a 74 (198)
...+.|||||+.+ +..++. +... .. . .........|.|.|||||+|++|||+||++|++|
T Consensus 60 ~~~i~I~tDS~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~wV~gH~g~~gNe~AD~LA~~a 125 (126)
T d1mu2a1 60 GPKVNIIVDSQYV-MGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 125 (126)
T ss_dssp CSEEEEEESCHHH-HHHHHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred CcceEEEechHHH-HHHHhcCCccccchHHHHHHHHhhhcceeEEEEEeCCCCCcchHHHHHHHHhh
Confidence 3568899999999 554332 2211 11 1 1223346799999999999999999999999976
No 2
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=99.13 E-value=3.6e-12 Score=93.85 Aligned_cols=71 Identities=28% Similarity=0.287 Sum_probs=47.3
Q ss_pred hhhhhhcCCCCCCeEEEEecchhhhccCCC-----------------CCCch-hH-H-HHHHHhCCeEEEEEecCCCCCC
Q psy2786 3 YAVKIASCPANPTYSLLFPDNIDADIYPPN-----------------KPKPL-CL-R-VHLLCYGKQLAFLWCPSHTGIQ 62 (198)
Q Consensus 3 ~a~~~~~~~~~~~~~~i~sDn~aa~i~~~~-----------------~~~~~-~~-~-~~l~~~~~~i~l~WvPgH~gI~ 62 (198)
.||+.+. ....+.|++||+.+ +..+. .|... .+ + .........|.|.|||||+|++
T Consensus 53 ~AL~~~~---~~~~i~i~tds~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~~~~~v~~~wVkgHsg~~ 128 (147)
T d1rila_ 53 EGLKALK---EPCEVDLYTDSHYL-KKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHP 128 (147)
T ss_dssp HHHHSCC---SCCEEEEECCCHHH-HHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCT
T ss_pred HHhhhcc---CCceEEEecchhhh-hccccccchhhhhhccccccccccchhHHHHHHHHHHhhhcccceEEccCCCCCc
Confidence 4555443 34567899999998 43221 11111 11 1 1123456789999999999999
Q ss_pred cchHHHHHHhCCCCC
Q psy2786 63 GNEAVDRAARNPSAS 77 (198)
Q Consensus 63 GNE~AD~aAk~a~~~ 77 (198)
|||.||++||+|+..
T Consensus 129 gNe~AD~LAk~aa~~ 143 (147)
T d1rila_ 129 ENERVDREARRQAQS 143 (147)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHH
Confidence 999999999977544
No 3
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=99.12 E-value=4.1e-12 Score=93.63 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.7
Q ss_pred hCCeEEEEEecCCCCCCcchHHHHHHhCCCCC
Q psy2786 46 YGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 77 (198)
Q Consensus 46 ~~~~i~l~WvPgH~gI~GNE~AD~aAk~a~~~ 77 (198)
....|.|+|||||+|++|||+||++||.|+..
T Consensus 110 ~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~ 141 (152)
T d1jl1a_ 110 GQHQIKWEWVKGHAGHPENERADELARAAAMN 141 (152)
T ss_dssp TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred hcceeEEEEecccCCCccHHHHHHHHHHHHhC
Confidence 45689999999999999999999999988653
No 4
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=97.34 E-value=2.7e-05 Score=53.66 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=28.2
Q ss_pred CCeEEEEecchhhhccCCCCCC---chhH-HHH--HHHhCCeEEEEEecCC
Q psy2786 14 PTYSLLFPDNIDADIYPPNKPK---PLCL-RVH--LLCYGKQLAFLWCPSH 58 (198)
Q Consensus 14 ~~~~~i~sDn~aa~i~~~~~~~---~~~~-~~~--l~~~~~~i~l~WvPgH 58 (198)
...+.|||||+.+ +..++.-. ...+ +.. +......|.|.|||||
T Consensus 61 ~~~v~I~TDS~yv-i~~i~~~~~~~~~~l~~~il~~l~~~~~v~i~WVpgH 110 (110)
T d1s1ta1 61 GLEVNIVTDSQYA-LGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAH 110 (110)
T ss_dssp CSEEEEEECCHHH-HHHHHHCCSEESCHHHHHHHHHHHHCSEEEEEECCSS
T ss_pred CCeEEEEEehHHH-HHHHhcCccccchHHHHHHHHHHhcCCceEEEEeCCC
Confidence 3568899999999 66654321 1111 111 1233578999999999
No 5
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=80.46 E-value=0.11 Score=36.08 Aligned_cols=63 Identities=8% Similarity=-0.041 Sum_probs=40.8
Q ss_pred hhhhhhcCCCCCCeEEEEecchhhhccCC---------CC-CCchhHHHHH-----HHhCCeEEEEEecCCCCCCcchHH
Q psy2786 3 YAVKIASCPANPTYSLLFPDNIDADIYPP---------NK-PKPLCLRVHL-----LCYGKQLAFLWCPSHTGIQGNEAV 67 (198)
Q Consensus 3 ~a~~~~~~~~~~~~~~i~sDn~aa~i~~~---------~~-~~~~~~~~~l-----~~~~~~i~l~WvPgH~gI~GNE~A 67 (198)
.||+.+...+ ..+.|||||+=+ |.-+ .. +....+-..+ ......+.+.|+..|+.--||..|
T Consensus 54 ~aL~~~~~~~--~~i~I~tDS~yv-i~wv~~~~~kt~~~~~vkN~~l~~~i~~a~~~lk~h~~~~~~~KW~~~~wG~i~A 130 (132)
T d1zbfa1 54 HGLRYLKERN--SRKPIYSNSQTA-IKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKA 130 (132)
T ss_dssp HHHHHHHHTT--CCCCEEESCHHH-HHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTT
T ss_pred HHHHHhhcCC--ceEEEEeccHHH-HHHHHhCceecCcCCCcccHHHHHHHHHHHHHHHhCCcCceeEEecCcccccCCC
Confidence 4788887554 346789999998 4321 11 2222221111 133567899999999999999999
Q ss_pred H
Q psy2786 68 D 68 (198)
Q Consensus 68 D 68 (198)
|
T Consensus 131 D 131 (132)
T d1zbfa1 131 D 131 (132)
T ss_dssp C
T ss_pred C
Confidence 8
No 6
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.46 E-value=14 Score=19.05 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=10.1
Q ss_pred CCc-ccCCCCCccee
Q psy2786 160 STC-RCGETLSVQHI 173 (198)
Q Consensus 160 p~C-~Cg~~~t~~Hi 173 (198)
-.| .||+.-+|.+|
T Consensus 23 l~C~aCGa~r~V~~I 37 (37)
T d1neea2 23 LKCEACGAKAPLKNV 37 (37)
T ss_dssp EECSTTSCCCCSCCC
T ss_pred EEeccCCCCcccccC
Confidence 458 99987777653
No 7
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=22.33 E-value=12 Score=17.21 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=6.4
Q ss_pred CCCc-ccCC
Q psy2786 159 PSTC-RCGE 166 (198)
Q Consensus 159 ~p~C-~Cg~ 166 (198)
.|.| .||.
T Consensus 2 gpvcfscgk 10 (26)
T d1dsqa_ 2 GPVCFSCGK 10 (26)
T ss_dssp CCBCTTTCC
T ss_pred CCEEEecCC
Confidence 4889 9985
No 8
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.48 E-value=26 Score=17.07 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=15.2
Q ss_pred Cc-ccCCC-CCcceee----e-ccccHHhh
Q psy2786 161 TC-RCGET-LSVQHIL----T-CTLHGHIR 183 (198)
Q Consensus 161 ~C-~Cg~~-~t~~Hil----~-Cp~~~~~R 183 (198)
.| .||.. .-.-||+ + |-..+.+|
T Consensus 1 vC~dCg~NLKqrG~Ffv~~~lyCE~HAr~R 30 (31)
T d1x64a2 1 VCADCNLNLKQKGYFFVEGELYCETHARAR 30 (31)
T ss_dssp CCSSSCCCTTTSCCEEETTEEECHHHHHHH
T ss_pred CccccccChhhcceEEeccEEeehhhhhcc
Confidence 48 89974 4777877 3 66555554
No 9
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.71 E-value=29 Score=17.99 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=8.3
Q ss_pred CCCc-ccCCCCCc
Q psy2786 159 PSTC-RCGETLSV 170 (198)
Q Consensus 159 ~p~C-~Cg~~~t~ 170 (198)
...| .||..+|+
T Consensus 2 ~r~C~~Cgtt~Tp 14 (39)
T d1y0ja1 2 ARECVNCGATATP 14 (39)
T ss_dssp CCCCSSSCCCCCS
T ss_pred cCCCCCCCCCCCc
Confidence 4578 89976554
No 10
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=16.69 E-value=36 Score=16.51 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=11.2
Q ss_pred cccccCCCCCCCc-ccCCC
Q psy2786 150 HGHLFKRAPPSTC-RCGET 167 (198)
Q Consensus 150 hl~~~~~~~~p~C-~Cg~~ 167 (198)
|..+.-......| .||++
T Consensus 8 hv~f~PPk~~g~cD~cg~~ 26 (30)
T d1ak2a2 8 HEEFNPPKEPMKDDITGEP 26 (30)
T ss_dssp BTTTBCCSSTTBCTTTCCB
T ss_pred cccccCCCCCCccCCCCCC
Confidence 4444444557789 99874
Done!