RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2787
(251 letters)
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 199 bits (509), Expect = 6e-64
Identities = 73/128 (57%), Positives = 89/128 (69%), Gaps = 2/128 (1%)
Query: 50 ILFFSSSSSSSGDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFG 107
IL S GDFG+MR D YVM E +P WC ESL+ FS ASD WMFG
Sbjct: 128 ILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFG 187
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPK 167
VT+WEMFT+G EPW GL+G QIL+KID+EGERL RPEACP ++Y +M QCW+ NPA+RP
Sbjct: 188 VTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPT 247
Query: 168 FSTLKDCL 175
F+ L++ L
Sbjct: 248 FAALREFL 255
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 157 bits (399), Expect = 2e-47
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 61 GDFGMMRYSQN-DCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R D Y LP W ESLK +F+ SD W FGV +WE+FT G +
Sbjct: 144 SDFGLSRDIYEDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQ 203
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ G++ ++L+ + +G RLPRPE CP E+Y LM QCW+ +P +RP FS L + L
Sbjct: 204 PYPGMSNEEVLELL-EDGYRLPRPENCPDELYELMLQCWAYDPEDRPTFSELVEDL 258
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 154 bits (392), Expect = 3e-46
Identities = 52/116 (44%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R +D Y LP W ESLK F+ SD W FGV +WE+FT GA
Sbjct: 147 SDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGAT 206
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ GL+ ++L+ + R+G RLP+PE CP E+Y LM CW +P +RP FS L + L
Sbjct: 207 PYPGLSNEEVLEYL-RKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERL 261
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 152 bits (386), Expect = 2e-45
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +D Y LP W ESLK +F+ SD W FGV +WE+FT G +P
Sbjct: 144 SDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQP 203
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G++ ++L+ + + G RLP+P CP E+Y LM QCW+++P +RP FS L + L
Sbjct: 204 YPGMSNEEVLEYL-KNGYRLPQPPNCPPELYDLMLQCWAEDPEDRPTFSELVEIL 257
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 151 bits (384), Expect = 5e-45
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +D Y + LP W ESLK +F+ SD W FGV +WE+FT G EP
Sbjct: 145 SDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEP 204
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G++ ++L+ + ++G RLP+P CP E+Y LM QCW+++P +RP FS L + L
Sbjct: 205 YPGMSNAEVLEYL-KKGYRLPKPPNCPPELYKLMLQCWAEDPEDRPTFSELVEIL 258
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 123 bits (311), Expect = 4e-34
Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GDFG+ RY +++ Y + LP W ES+ +F+ ASD WMFGV +WE+ G +P
Sbjct: 149 GDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKP 208
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLK 172
+ G+ ++ +I+ GERLP P CP +Y+LM +CW+ +P++RP+F+ LK
Sbjct: 209 FQGVKNNDVIGRIE-NGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELK 259
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 117 bits (294), Expect = 8e-32
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R + D Y ++ K +P W E+ H FS SD W FG+ ++EMFT+G P
Sbjct: 146 ADFGLARLIKEDVY-LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVP 204
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G+N ++ +I G R+P P CP E+Y +M +CW+ P +RP F L++ L
Sbjct: 205 YPGMNNHEVYDQITA-GYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREEL 258
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 116 bits (293), Expect = 1e-31
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 62 DFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFGM R + +D Y T P W E + + +FS SD W +GVT+WE F++GA+
Sbjct: 138 DFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAK 197
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
P+ + G +++ ++ GERLPRPE CP E+Y++M CW P +RP FS L+ R
Sbjct: 198 PYGEMKGAEVIAMLE-SGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRR 254
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 114 bits (286), Expect = 1e-30
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ RY +D Y ++ P W P E +++FS SD W FGV +WE+F+ G P+
Sbjct: 143 DFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPY 202
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ ++++ + G RL RP+ P EVY +M CW + P +RP F L L
Sbjct: 203 ERFSNSEVVESV-SAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL 255
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 113 bits (285), Expect = 2e-30
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFGM R Y+ D Y + LP W P ES+ + +F+ SD W FGV +WE+FT+G
Sbjct: 164 GDFGMSRDVYT-TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGK 222
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+PW GL+ ++++ I +G L RP CP EVY +M CW ++P +R KD RL
Sbjct: 223 QPWYGLSNEEVIECIT-QGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINI---KDIHERL 278
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 111 bits (280), Expect = 1e-29
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R YS D Y +E +P W P ES+ +N+++ SD W +GV +WE+F++G +
Sbjct: 173 DFGLSRNIYSA-DYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQ 231
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
P+ G+ +++ + R+G L P+ CP+E+Y LMR CWSK P++RP F+++ L R
Sbjct: 232 PYYGMAHEEVIYYV-RDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR 288
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 110 bits (278), Expect = 2e-29
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ R ++D Y E P W E+ + +F+ SD W FG+ + E+ T+G P+
Sbjct: 146 DFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPY 205
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
G+ ++L++++R G R+PRP CP E+Y LM QCW K+P ERP F L+ L
Sbjct: 206 PGMTNREVLEQVER-GYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFL 258
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 110 bits (277), Expect = 2e-29
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVT 109
+L ++ DFG+ R + D Y E P W E+ +N+FS SD W FG+
Sbjct: 134 VLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGIL 193
Query: 110 IWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFS 169
+ E+ T+G P+ G+ ++LQ++D+ G R+P P CP E+Y +M CW ++P +RP F
Sbjct: 194 LTEIVTYGRMPYPGMTNAEVLQQVDQ-GYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFE 252
Query: 170 TLK 172
TL+
Sbjct: 253 TLQ 255
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 110 bits (277), Expect = 2e-29
Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 62 DFGMMRYSQNDCYVMTE-RKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFGM R + Y +++ K +P W E+L + +++ SD W +G+ +WE F+ G P
Sbjct: 136 DFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTP 195
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLY 176
+ G++ Q ++I+ G R+P P+ CP E+Y LM QCW+ +P RP FS + + L
Sbjct: 196 YPGMSNQQTRERIES-GYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 110 bits (276), Expect = 3e-29
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ R D Y P W ESL +N+FS SD W FGV +WE+ T+G P+
Sbjct: 147 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 206
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
G++ Q+ + +++ G R+ RPE CP +VY LMR CW NP++RP F+ +
Sbjct: 207 PGIDLSQVYELLEK-GYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEI 255
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 110 bits (276), Expect = 4e-29
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFGM R YS D Y + R LP W P ES+ + +F+ SD W FGV +WE+FT+G
Sbjct: 164 GDFGMSRDIYS-TDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGK 222
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
+PW L+ + ++ I +G L RP CP EVYA+M+ CW + P +R + L
Sbjct: 223 QPWYQLSNTEAIECIT-QGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA 280
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 109 bits (273), Expect = 1e-28
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 62 DFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ + Y K +P W +ES+ H ++ SD W +GVT+WE+ TFGA+
Sbjct: 152 DFGLAKLLDVDEKEYHAEGGK-VPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAK 210
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++I +++ GERLP+P C ++VY ++ +CW + RP F L + ++
Sbjct: 211 PYEGIPAVEIPDLLEK-GERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKM 268
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 107 bits (270), Expect = 4e-28
Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 15/133 (11%)
Query: 61 GDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFG- 117
DFG+ + D Y + E P W E L+ ++FS ASD W FGVT++E+FT+G
Sbjct: 151 SDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGD 210
Query: 118 ------AEPWVGL----NGMQILQKIDR--EGERLPRPEACPVEVYALMRQCWSKNPAER 165
AE + M + + ++ EGERLPRP +CP EVY LM+ CW P +R
Sbjct: 211 PSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDR 270
Query: 166 PKFSTLKDCLYRL 178
P F+ L + RL
Sbjct: 271 PSFADLILIVDRL 283
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 107 bits (269), Expect = 7e-28
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R YS D Y + + LP W P E++ + +F+ SD W FGV +WE+F++G +
Sbjct: 167 DFGLSRDIYS-ADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQ 225
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
P+ G + ++++ I R + LP PE CP VYALM +CW++ PA RP+F +
Sbjct: 226 PYYGFSNQEVIEMI-RSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDI 276
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 106 bits (267), Expect = 9e-28
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFG+ R Y +D Y LP W ESL +F+ SD W FGV +WE+ T G
Sbjct: 153 GDFGLARDIYK-SDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQ 211
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+P+ LN ++LQ + G RL +PE CP ++Y LM CW+++P+ERP F +++ L
Sbjct: 212 QPYPALNNQEVLQHV-TAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEIL 267
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 106 bits (266), Expect = 2e-27
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 61 GDFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
GDFGM R + D Y + LP W ESLK F+ SD W FGV +WEM T +
Sbjct: 161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQ 220
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFS 169
P+ GL+ ++L+ + +G L PE CP ++ LMR CW NP RP F
Sbjct: 221 PYQGLSNEEVLKFV-IDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFL 269
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 106 bits (266), Expect = 2e-27
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 62 DFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R D Y T LP W E+L ++ SD W FGV +WE+FT G P
Sbjct: 175 DFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSP 234
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ ++ L K+ +EG R+ +P+ C E+Y LMR CW + P++RP F L + L R+
Sbjct: 235 YPGI-PVEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM 291
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 105 bits (265), Expect = 3e-27
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 10/125 (8%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFGM R YS +D Y + R PLP W ES+ +F+ SD W FGVT+WE+ T E
Sbjct: 173 DFGMSRNLYS-SDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCRE 231
Query: 120 -PWVGLNGMQILQKI-----DREGER-LPRPEACPVEVYALMRQCWSKNPAERPKFSTLK 172
P+ L Q+++ D + LPRP CP ++Y LM +CW ++ +RP F +
Sbjct: 232 QPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIH 291
Query: 173 DCLYR 177
L R
Sbjct: 292 LFLQR 296
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 104 bits (262), Expect = 5e-27
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ + YS D Y +P W +ESL ++ SD W FGVT+WE+ T G
Sbjct: 156 DFGLSKKIYSG-DYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQT 214
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLT 179
P+ G+ +I + R G RL +PE C E+Y LM CW +P +RP F+ L++ L +
Sbjct: 215 PYPGVENHEIYDYL-RHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENIL 273
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 102 bits (255), Expect = 3e-26
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ R +++ Y E P W E++ + F+ SD W FG+ + E+ T+G P+
Sbjct: 145 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPY 204
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
G+ +++Q ++R G R+PRP+ CP E+Y LMR CW + P ERP F L+ L
Sbjct: 205 PGMTNPEVIQNLER-GYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVL 257
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 102 bits (255), Expect = 6e-26
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFGM R YS D Y + LP W P ES+ + +F+ SD W FGV +WE+FT+G
Sbjct: 165 GDFGMSRDVYS-TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGK 223
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+PW L+ ++++ I +G L RP CP EVY +M CW + P +R +K+ +Y++
Sbjct: 224 QPWFQLSNTEVIECIT-QGRVLERPRVCPKEVYDIMLGCWQREPQQR---LNIKE-IYKI 278
Query: 179 TPAVMKAT 186
A+ KAT
Sbjct: 279 LHALGKAT 286
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 101 bits (252), Expect = 7e-26
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 62 DFGMMRYSQNDCYVMTE-RKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFGM R ++ Y T K +P W E+L + ++S SD W FG+ +WE F+ GA P
Sbjct: 137 DFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVP 196
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
+ L+ Q + I+ +G RLP PE CP VY LM +CW +P +RP FST+
Sbjct: 197 YANLSNQQTREAIE-QGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTV 246
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 100 bits (251), Expect = 1e-25
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y E P W E++ F+ SD W FG+ ++E+ T+G P
Sbjct: 145 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIP 204
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G++ ++ + R G R+PR E CP E+Y +M+ CW + ERP F L+ L
Sbjct: 205 YPGMSNSDVMSALQR-GYRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVL 258
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 100 bits (251), Expect = 2e-25
Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 62 DFGMMRYSQN-DCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R ++ + T+ +P W E++ + +F+ ASD W FG+ +WE+ ++G P
Sbjct: 149 DFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERP 208
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ ++ +++ ++ +G RLP P CP +Y LM CW K+ ERP FS + L ++
Sbjct: 209 YWDMSNQDVIKAVE-DGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 98.9 bits (246), Expect = 5e-25
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFGM R + Y + K +P W E+L + ++S SD W +G+ +WE F+ G P+
Sbjct: 136 DFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPY 195
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLK 172
G+ Q +++++ G R+ P+ CP +VY +M++CW P RPKFS L+
Sbjct: 196 PGMTNQQAREQVEK-GYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQ 245
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 98.9 bits (246), Expect = 6e-25
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ R + LP W E+LKH +FS SD W +GV +WE+F++G P+
Sbjct: 143 DFGLARVGSMG----VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPY 198
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
++ ++ + +++ G R+ PE CP +VY LM CW P +RP F L++ L +
Sbjct: 199 PKMSLKEVKECVEK-GYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK 253
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 98.4 bits (245), Expect = 8e-25
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFGM RY +D Y + P W P E +++S SD W FGV +WE+FT G P+
Sbjct: 143 DFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPF 202
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
+ ++++ I R G RL RP+ + VY +M CW + P RP F+ L
Sbjct: 203 EKKSNYEVVEMISR-GFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAEL 251
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 98.9 bits (246), Expect = 1e-24
Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
D G+ R YS D Y + + LP W P E++ + +FS SD W FGV +WE+F+FG +
Sbjct: 167 DLGLSREIYS-ADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQ 225
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G + ++++ + R+ + LP E CP +Y+LM +CW + P+ RP+F KD RL
Sbjct: 226 PYYGFSNQEVIEMV-RKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRF---KDIHTRL 280
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 98.2 bits (245), Expect = 1e-24
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ ++ K LP W E+L+ +FS SD W FG+ +WE+++FG P+
Sbjct: 145 DFGL---AKEASQGQDSGK-LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 200
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ ++ +++ G R+ PE CP EVY +M+ CW +PA+RP F L++ L +
Sbjct: 201 PRIPLKDVVPHVEK-GYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI 256
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 98.0 bits (244), Expect = 2e-24
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ RY +D Y + P W P E L +++FS SD W FGV +WE+++ G P+
Sbjct: 143 DFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPY 202
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
N + ++K+ +G RL RP +VYA+M CW + ERP F L
Sbjct: 203 ERFNNSETVEKVS-QGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQL 251
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 98.2 bits (244), Expect = 2e-24
Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFGM R YS D Y + LP W P ES+ + +F+ SD W GV +WE+FT+G
Sbjct: 162 GDFGMSRDVYS-TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGK 220
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+PW L+ ++++ I +G L RP CP EVY LM CW + P R + L L
Sbjct: 221 QPWYQLSNNEVIECIT-QGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNL 279
Query: 179 TPA 181
A
Sbjct: 280 AKA 282
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 97.0 bits (241), Expect = 3e-24
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQND--CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFG 107
+L + + DFG+ + D Y P W E + + +FS SD W FG
Sbjct: 126 VLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFG 185
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPK 167
V +WE F++G +P+ G+ G ++ Q I+ GER+ P+ CP E+Y LM+ CW+ ERP
Sbjct: 186 VLMWEAFSYGQKPYKGMKGNEVTQMIES-GERMECPQRCPPEMYDLMKLCWTYGVDERPG 244
Query: 168 FSTLK 172
F+ ++
Sbjct: 245 FAVVE 249
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 97.4 bits (242), Expect = 4e-24
Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 62 DFGMMRYSQND-CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R D + +P W +ES+ H +F+ SD W +GVT+WE+ TFGA+P
Sbjct: 152 DFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKP 211
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ +I +++ GERLP+P C ++VY +M +CW + RP+F L D R+
Sbjct: 212 YDGIPAREIPDLLEK-GERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRM 268
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 97.1 bits (242), Expect = 4e-24
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 83 PCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR 142
P W +ESL + ++S ASD W FGV +WE+ T G P+V ++ ++ + ++G RL +
Sbjct: 182 PVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYL-KDGYRLAQ 240
Query: 143 PEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P CP E++A+M CW+ +P ERP FS L CL
Sbjct: 241 PINCPDELFAVMACCWALDPEERPSFSQLVQCL 273
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 96.0 bits (239), Expect = 1e-23
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 61 GDFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFGM R + Y R LP W P E+ F+ +D W FGV +WE+F+ G
Sbjct: 161 ADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYM 220
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
P+ G ++++ + G RL P+ CP VY +M CW P +RP F+T+
Sbjct: 221 PYPGRTNQEVMEFV-TGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATI 271
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 96.6 bits (240), Expect = 1e-23
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVT 109
+L + +S DFG+ R + YV LP W +ESL ++ ++ SD W FGV
Sbjct: 150 VLVGENLASKIADFGLSR--GEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVL 207
Query: 110 IWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFS 169
+WE+ + G P+ G+ ++ +K+ +G R+ +P C EVY LMRQCW P ERP F+
Sbjct: 208 LWEIVSLGGTPYCGMTCAELYEKLP-QGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFA 266
Query: 170 TLKDCLYRLTPA 181
+ L R+ A
Sbjct: 267 QISVQLSRMLEA 278
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 97.0 bits (241), Expect = 1e-23
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 62 DFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R D Y T LP W E+L ++ SD W FG+ +WE+FT G P
Sbjct: 177 DFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSP 236
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLTP 180
+ G+ ++ L K+ REG R+ +P C E+Y LMR+CW P +RP F L + L ++
Sbjct: 237 YPGIP-VEELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLA 295
Query: 181 AV 182
AV
Sbjct: 296 AV 297
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 95.8 bits (238), Expect = 1e-23
Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ + YS D Y LP W +ESL N ++ SD W FGVT+WE+ T G
Sbjct: 156 DFGLSKKIYS-GDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQT 214
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ G+ +I + + G RL +P C +VY LM QCWS P RP F L+D L
Sbjct: 215 PYAGVENSEIYNYLIK-GNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQL 269
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 95.5 bits (237), Expect = 2e-23
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVT 109
IL + + DFG+ R + YV LP W +ESL ++ ++ SD W +GV
Sbjct: 143 ILVGENYVAKIADFGLSR--GQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVL 200
Query: 110 IWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFS 169
+WE+ + G P+ G+ ++ +K+ +G RL +P C EVY LMRQCW + P ERP F+
Sbjct: 201 LWEIVSLGGTPYCGMTCAELYEKLP-QGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFA 259
Query: 170 TLKDCLYRL 178
+ L R+
Sbjct: 260 QILVSLNRM 268
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 95.6 bits (238), Expect = 2e-23
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 50 ILFFSSSSSSSGDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFG 107
IL S + GDFG+ + + Y + E P W ESL ++FS ASD W FG
Sbjct: 139 ILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFG 198
Query: 108 VTIWEMFTFG----AEPWVGL-------NGMQI---LQKIDREGERLPRPEACPVEVYAL 153
V ++E+FT+ + P + G I L ++ + RLP P CP E+YA+
Sbjct: 199 VVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAI 258
Query: 154 MRQCWSKNPAERPKFSTL 171
M++CW+ +P++RP FS L
Sbjct: 259 MKECWNNDPSQRPSFSEL 276
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 95.4 bits (237), Expect = 2e-23
Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQND---CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMF 106
IL S+ DFG+ R ++D Y + K +P W E++ + +F+ ASD W F
Sbjct: 138 ILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGK-IPIRWTAPEAIAYRKFTSASDVWSF 196
Query: 107 GVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
G+ +WE+ +FG P+ ++ ++++ I+ +G RLP P CP VY LM QCW ++ A RP
Sbjct: 197 GIVMWEVMSFGERPYWDMSNHEVMKAIN-DGFRLPAPMDCPSAVYQLMLQCWQQDRARRP 255
Query: 167 KFSTLKDCLYRL 178
+F + + L +L
Sbjct: 256 RFVDIVNLLDKL 267
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 94.8 bits (236), Expect = 2e-23
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 62 DFGMMRYSQNDCYVMTERKP---LPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ R + Y LP W +ESL+ +F+ SD W FGV +WE+ T GA
Sbjct: 141 DFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGA 200
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
P+ ++ I + + G RL +PE CP +Y +M CW P RP FS L
Sbjct: 201 PPYPDVDSFDITVYLLQ-GRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSEL 252
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 95.4 bits (237), Expect = 2e-23
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 50 ILFFSSSSSSSGDFGM--MRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFG 107
IL S S DFG+ + Y + Y +E K P W +ES+ +++ SD W +G
Sbjct: 140 ILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKT-PIKWMALESILFGRYTHQSDVWSYG 198
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPK 167
VT+WEM ++GAEP+ G+ ++ +++ GERL +P+ C ++VY +M +CW + RP
Sbjct: 199 VTVWEMMSYGAEPYAGMRPHEVPDLLEK-GERLAQPQICTIDVYMVMVKCWMIDENVRPT 257
Query: 168 FSTLKDCLYRL 178
F L + R+
Sbjct: 258 FKELANEFTRM 268
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 94.8 bits (236), Expect = 2e-23
Identities = 38/90 (42%), Positives = 55/90 (61%)
Query: 82 LPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLP 141
+P W E+++ + FS SD W FGV +WE+FT G P+ GL+ ++L ++ LP
Sbjct: 180 IPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELP 239
Query: 142 RPEACPVEVYALMRQCWSKNPAERPKFSTL 171
PE CP +Y LM +CW+ NP +RP FS L
Sbjct: 240 VPEGCPSRLYKLMTRCWAVNPKDRPSFSEL 269
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 95.0 bits (236), Expect = 3e-23
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQND---CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMF 106
IL S+ DFG+ R ++D Y K +P W E++ + +F+ ASD W +
Sbjct: 137 ILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK-IPIRWTAPEAIAYRKFTSASDVWSY 195
Query: 107 GVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
G+ +WE+ ++G P+ ++ +++ I+ EG RLP P CP ++ LM CW K+ ERP
Sbjct: 196 GIVMWEVMSYGERPYWEMSNQDVIKAIE-EGYRLPAPMDCPAALHQLMLDCWQKDRNERP 254
Query: 167 KFSTLKDCLYRL 178
KF + L +L
Sbjct: 255 KFEQIVSILDKL 266
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 94.3 bits (234), Expect = 5e-23
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 62 DFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R + D YV + +P W +ESL + ++ SD W FGV +WE+ T G P
Sbjct: 170 DFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNP 229
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ + L + + G R+ RPE C E+Y LM CW + P +RP F+ + L ++
Sbjct: 230 YPGI-APERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKM 286
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 94.3 bits (234), Expect = 8e-23
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R + YV LP W +ESL ++ ++ SD W +GV +WE+ + G P
Sbjct: 166 ADFGLSR--GQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP 223
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ ++ +K+ +G RL +P C EVY LMRQCW + P ERP F+ + L R+
Sbjct: 224 YCGMTCAELYEKLP-QGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 280
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 93.2 bits (231), Expect = 1e-22
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y E P W E++ F+ SD W FG+ + E+ T+G P
Sbjct: 144 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP 203
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G++ ++++ ++R G R+PRPE CP E+Y +M +CW P ERP F ++ L
Sbjct: 204 YPGMSNPEVIRALER-GYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVL 257
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 93.9 bits (233), Expect = 1e-22
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 82 LPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLP 141
+P W +ES+ H ++ SD W +GVT+WE+ TFG++P+ G+ +I +++ GERLP
Sbjct: 173 VPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEK-GERLP 231
Query: 142 RPEACPVEVYALMRQCWSKNPAERPKFSTL 171
+P C ++VY +M +CW + RPKF L
Sbjct: 232 QPPICTIDVYMIMVKCWMIDADSRPKFREL 261
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 93.1 bits (231), Expect = 1e-22
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 61 GDFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
GDFGM R + D Y + LP W ESLK F+ +SD W FGV +WE+ + +
Sbjct: 161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQ 220
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ GL+ Q+L K +G L +P+ CP V LMR CW NP RP F + + L
Sbjct: 221 PYQGLSNEQVL-KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 275
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 92.4 bits (229), Expect = 2e-22
Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y + P W E+ + +F+ SD W FG+ + E+ T G P
Sbjct: 144 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 203
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G+N ++L++++R G R+P P+ CP+ ++ LM QCW K+P ERP F L+ L
Sbjct: 204 YPGMNNREVLEQVER-GYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFL 257
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 91.6 bits (227), Expect = 4e-22
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 61 GDFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
GDFGM R + D Y + LP W ESLK F+ SD W FGV +WE+ T +
Sbjct: 161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ 220
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKF----STLKD 173
P+ G++ Q+L+ + EG L +P+ CP ++ LMR CW NP RP F S++K+
Sbjct: 221 PYQGMSNEQVLRFV-MEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 277
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 90.9 bits (225), Expect = 6e-22
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y + P W E+ + +F+ SD W FG+ + E+ T G P
Sbjct: 144 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 203
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G+ ++L++++R G R+P P+ CP ++ LM+ CW K+P ERP F ++ L
Sbjct: 204 YPGMVNREVLEQVER-GYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFL 257
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 91.2 bits (226), Expect = 7e-22
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 50 ILFFSSSSSSSGDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFG 107
+L F + D G+ R Y+ D Y + LP W E++ + +FS SD W +G
Sbjct: 155 VLVFDKLNVKISDLGLFREVYAA-DYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYG 213
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPK 167
V +WE+F++G +P+ G + +++ I R + LP P+ CP VY LM +CW++ P+ RP+
Sbjct: 214 VVLWEVFSYGLQPYCGYSNQDVIEMI-RNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPR 272
Query: 168 FSTLKDCLYRL 178
F KD RL
Sbjct: 273 F---KDIHSRL 280
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 91.6 bits (227), Expect = 9e-22
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRYSQN-DCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R + D Y T LP W E+L ++ SD W FGV +WE+FT G
Sbjct: 182 ADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS 241
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++ L K+ +EG R+ +P C E+Y +MR CW P++RP F L + L R+
Sbjct: 242 PYPGVP-VEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 299
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 91.2 bits (226), Expect = 9e-22
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRYSQN-DCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R N D Y T LP W E+L ++ SD W FGV +WE+FT G
Sbjct: 179 ADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGS 238
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++ L K+ +EG R+ +P C E+Y +MR CW P+ RP F L + L R+
Sbjct: 239 PYPGIP-VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRI 296
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 91.6 bits (227), Expect = 1e-21
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRYSQN-DCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R N D Y T LP W E+L ++ SD W FGV +WE+FT G
Sbjct: 176 ADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGS 235
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++ L K+ +EG R+ +P C E+Y +MR+CW P++RP F L + L R+
Sbjct: 236 PYPGIP-VEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRV 293
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 90.0 bits (223), Expect = 1e-21
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 63 FGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWV 122
F ++ +++ T P W E+++++ FS ASD W FG+ +WE+ ++G P+
Sbjct: 151 FRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYW 210
Query: 123 GLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
++G +++ ++ +G RLP P CP ++ LM CW K ERP+FS + L ++
Sbjct: 211 DMSGQDVIKAVE-DGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 90.9 bits (225), Expect = 1e-21
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 62 DFGMMRYSQND-CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R + D + +P W +E + + +F+ SD W +GVTIWE+ TFG +P
Sbjct: 152 DFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKP 211
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ +I +++ GERLP+P C ++VY +M +CW + RPKF L R+
Sbjct: 212 YDGIPTREIPDLLEK-GERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRM 268
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 90.6 bits (225), Expect = 2e-21
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 61 GDFGMMRYSQNDC-YVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R ND YV+ LP W ES+ + ++ SD W +G+ +WE+F+ G+
Sbjct: 183 CDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSN 242
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ G+ K+ +EG R+ +PE P E+Y +M+ CW +P +RP F + +
Sbjct: 243 PYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLI 298
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 89.2 bits (221), Expect = 2e-21
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFGM R+ +D Y + P W E +++S SD W FGV +WE+F+ G P+
Sbjct: 143 DFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPY 202
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLT 179
+ ++++ I+ G RL +P VY LM+ CW + P +RP FS L L++L
Sbjct: 203 ENRSNSEVVETIN-AGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLL---LHQLA 256
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 87.3 bits (216), Expect = 1e-20
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 83 PCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR 142
P W E + +FS SD W +G+T+WE F++G +P+ + G +++ I++ G+RL
Sbjct: 161 PLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQ-GKRLDC 219
Query: 143 PEACPVEVYALMRQCWSKNPAERPKFSTLKD 173
P CP E+YALM+ CW +RP F+ +++
Sbjct: 220 PAECPPEMYALMKDCWIYKWEDRPNFAKVEE 250
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 88.4 bits (219), Expect = 2e-20
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R Y D YV LP W ES+ ++ SD W FGV +WE+F+ GA
Sbjct: 216 DFGLARDIYKDPD-YVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGAS 274
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
P+ G+ + + +EG R+ PE E+Y++M CW NP +RP FS L
Sbjct: 275 PYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSEL 326
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 87.7 bits (217), Expect = 2e-20
Identities = 48/119 (40%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFGM R YS D Y + R LP W ES+ +F+ ASD W FGVT+WE+ T E
Sbjct: 173 DFGMSRNLYS-GDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKE 231
Query: 120 -PWVGLNGMQILQKID---REGER---LPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
P+ L+ Q+++ R+ R LP+P CP +Y LM CW +N ERP F +
Sbjct: 232 QPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEI 290
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 86.6 bits (214), Expect = 2e-20
Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ + + + + LP W E+L+ +FS SD W FG+ +WE+++FG P+
Sbjct: 145 DFGLTKEASS----TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 200
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ ++ ++++ G ++ P+ CP VY +M+QCW + A RP F L++ L
Sbjct: 201 PRIPLKDVVPRVEK-GYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQL 253
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 86.2 bits (213), Expect = 4e-20
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 57 SSSSGDFGMMRYSQN-DCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFT 115
+ DFG+ + N D Y +P W +ESL ++ SD W FGVT+WE+ T
Sbjct: 150 NVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIAT 209
Query: 116 FGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLK 172
G P+ G+ +I + R+G RL +P C +Y+LM CW NP +RP F TL+
Sbjct: 210 RGQTPYPGVENSEIYDYL-RQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLR 265
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 87.3 bits (216), Expect = 5e-20
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 62 DFGMMRYSQNDC-YVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +ND YV+ LP W ES+ + ++ SD W +G+ +WE+F+ G+ P
Sbjct: 257 DFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSP 316
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFS 169
+ G+ K+ +EG R+ PE P E+Y +M+ CW +P +RP F
Sbjct: 317 YPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFK 365
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 85.7 bits (212), Expect = 8e-20
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 15/126 (11%)
Query: 61 GDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTF-- 116
GDFG+ + ++ Y + E P W +E LK N+FS ASD W FGVT++E+ T
Sbjct: 149 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCD 208
Query: 117 -------GAEPWVGLNGMQI----LQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
E +G Q+ L ++ G RLP P+ CP EVY LM+ CW R
Sbjct: 209 SKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFR 268
Query: 166 PKFSTL 171
P F +L
Sbjct: 269 PTFRSL 274
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 85.8 bits (212), Expect = 8e-20
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 15/126 (11%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCP--WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFG+ + + D T + L P W E L ++F ASD W FGVT++E+ T+
Sbjct: 151 GDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCD 210
Query: 119 E-------------PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
P G + L ++ EG+RLPRP CP EVY LMR+CW P++R
Sbjct: 211 SESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKR 270
Query: 166 PKFSTL 171
F L
Sbjct: 271 TTFQNL 276
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 84.9 bits (210), Expect = 1e-19
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPL----PCPWCPMESLKHNQFSQASDAWM 105
IL S+ DFG+ R+ ++D T L P W E++ + +F+ ASD W
Sbjct: 137 ILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWS 196
Query: 106 FGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
+G+ +WE+ ++G P+ ++ ++ I+++ RLP P CP ++ LM CW K+ R
Sbjct: 197 YGIVMWEVMSYGERPYWDMSNQDVINAIEQD-YRLPPPMDCPTALHQLMLDCWQKDRNAR 255
Query: 166 PKFSTLKDCLYRL 178
PKF + L ++
Sbjct: 256 PKFGQIVSTLDKM 268
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 84.7 bits (209), Expect = 1e-19
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y + P W E+ + +F+ SD W FG+ + E+ T G P
Sbjct: 144 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 203
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLK 172
+ G+ ++L +++R G R+P P CP ++ LM QCW K P ERP F L+
Sbjct: 204 YPGMVNREVLDQVER-GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQ 254
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 83.9 bits (207), Expect = 6e-19
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R Y D YV LP W ES+ ++ SD W FGV +WE+F+ GA
Sbjct: 217 DFGLARDIYKDPD-YVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGAS 275
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ G+ + + ++G R+ PE E+Y +M CW +P ERP FS L + L
Sbjct: 276 PYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEIL 331
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 84.7 bits (209), Expect = 6e-19
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 62 DFGMMRYSQNDC-YVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +D YV LP W ES+ N ++ SD W +G+ +WE+F+ G P
Sbjct: 280 DFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTP 339
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLTP 180
+ G+ + G R+ +P+ EVY +M +CW+ P +RP F L D + L P
Sbjct: 340 YPGMIVDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP 399
Query: 181 A 181
+
Sbjct: 400 S 400
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 83.5 bits (206), Expect = 7e-19
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFGM R YS D Y + R LP W ES+ +F+ ASD W FGVT+WEMFT E
Sbjct: 172 DFGMSRNLYS-GDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKE 230
Query: 120 -PWVGLNGMQILQKID---REGER---LPRPEACPVEVYALMRQCWSKNPAERPKFSTLK 172
P+ L+ Q+++ R R L + CP V+ LM +CWS++ +RP F+ +
Sbjct: 231 QPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIH 290
Query: 173 DCL 175
L
Sbjct: 291 HFL 293
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 83.4 bits (206), Expect = 7e-19
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 62 DFGMMR-YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTF-GAE 119
DFGM R D Y + R LP W E + +F+ ASD W FGVT+WE+ +
Sbjct: 181 DFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQ 240
Query: 120 PWVGLNGMQILQ---KIDREGER---LPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
P+ L Q+++ + R+ R L RP CP +Y LM QCWS++ ERP FS +
Sbjct: 241 PYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDI 298
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 84.1 bits (208), Expect = 8e-19
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 61 GDFGMMRYSQNDC-YVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R ND YV+ LP W ES+ ++ SD W +G+ +WE+F+ G
Sbjct: 254 CDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKS 313
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ K+ + G ++ RP+ P E+Y++M+ CW+ P ERP FS + + R
Sbjct: 314 PYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ 372
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 80.8 bits (199), Expect = 1e-17
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 62 DFGMMRYSQNDC-YVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R D Y+ LP W ES+ +N ++ SD W FG+ +WE+FT G P
Sbjct: 282 DFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTP 341
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ L + + G R+ +P E+Y +M++CW + RP FS L + L
Sbjct: 342 YPELPMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL 399
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 79.7 bits (196), Expect = 2e-17
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 62 DFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R Y D YV LP W E++ ++ SD W FGV +WE+F+ GA
Sbjct: 222 DFGLARDIYKDPD-YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 280
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLT 179
P+ G+ + + +EG R+ P+ E+Y M CW P++RP FS L + L L
Sbjct: 281 PYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 340
Query: 180 PA 181
A
Sbjct: 341 QA 342
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 61.0 bits (149), Expect = 3e-11
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPC---PWCPMESLKHNQFSQASDAWMFGVTIWEMFTFG 117
DFG+ R + T + E L + +A D W GV ++E+ T G
Sbjct: 139 ADFGLARQLDPGEKLTT-----FVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLT-G 192
Query: 118 AEPWVG-LNGMQILQKIDREGERLPRPEA-CPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ G +++ +KI + P PE E L+R+ K+P +R T ++ L
Sbjct: 193 KPPFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRL---TAEEAL 249
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 60.6 bits (147), Expect = 6e-11
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 82 LPCPWCPMESLK--HNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGER 139
PW E ++ + A+D W FG T+ E+ + G EP L+ + + ++ R
Sbjct: 166 ERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFY-QDQHR 224
Query: 140 LPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLT 179
LP P+ C E+ L+ QCW+ +P +RP F + L L
Sbjct: 225 LPMPD-CA-ELANLINQCWTYDPTKRPSF---RAILRDLN 259
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 58.4 bits (141), Expect = 4e-10
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 61 GDFGM--MRYSQNDCYVMTERKPLPCPWCPMESLK--HNQF-----SQASDAWMFGVTIW 111
GD+G+ +Y + D YV ++ +P W E + H ++ S+ W GVTIW
Sbjct: 142 GDYGLSHNKYKE-DYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIW 200
Query: 112 EMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPE-ACPVE--VYALMRQCWSKNPAERP 166
E+F G++P+ L+ Q+L RE + +LP+P P+ Y +M+ CW + P +RP
Sbjct: 201 ELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCWLQ-PEQRP 258
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 56.8 bits (137), Expect = 1e-09
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 61 GDFGMM--RYSQNDCYVMTERKPLPCPWCPME-------SLKHNQFSQASDAWMFGVTIW 111
GD+G+ +Y + D Y+ + +P W E L ++ S+ W GVT+W
Sbjct: 142 GDYGLALEQYPE-DYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMW 200
Query: 112 EMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPE---ACPVEVYALMRQCWSKNPAERP 166
E+FT +P+ L+ Q+L+++ RE + +LP+P+ Y +M+ CW +P RP
Sbjct: 201 ELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRP 258
>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; pseudokinase domain (repeat 1). The
PTKc (catalytic domain) family to which this subfamily
belongs, is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal tyr kinase domain. The pseudokinase
domain shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak2 is widely expressed in
many tissues while Jak3 is expressed only in
hematopoietic cells. Jak2 is essential for the signaling
of hormone-like cytokines such as growth hormone,
erythropoietin, thrombopoietin, and prolactin, as well
as some IFNs and cytokines that signal through the IL-3
and gp130 receptors. Jak3 binds the shared receptor
subunit common gamma chain and thus, is essential in the
signaling of cytokines that use it such as IL-2, IL-4,
IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice
results in an embryonic lethal phenotype with multiple
defects including erythropoietic and cardiac
abnormalities. It is the only Jak gene that results in a
lethal phenotype when disrupted in mice. A mutation in
the pseudokinase domain of Jak2, V617F, is present in
many myeloproliferative diseases, including almost all
patients with polycythemia vera, and 50% of patients
with essential thrombocytosis and myelofibrosis. Jak3 is
important in lymphoid development and myeloid cell
differentiation. Inactivating mutations in Jak3 have
been reported in humans with severe combined
immunodeficiency (SCID).
Length = 258
Score = 54.1 bits (130), Expect = 9e-09
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 75 VMTERKPLPCPWCPMESLKHNQ-FSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKI 133
++ ER PW P E +++ Q S A+D W FG T+WE+F+ G +P L+ + LQ
Sbjct: 163 ILLER----IPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFY 218
Query: 134 DREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
+ + +LP P+ E+ L+ QC P RP F +
Sbjct: 219 E-DRHQLPAPKW--TELANLINQCMDYEPDFRPSFRAI 253
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 53.8 bits (130), Expect = 1e-08
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 92 LKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGER---LPRPEACPV 148
L N + D W GV ++E+ T G P+ G N + LQ I R P+
Sbjct: 171 LGGNGYGPKVDVWSLGVILYELLT-GKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSG 229
Query: 149 --EVYALMRQCWSKNPAERPKFSTLKDCL 175
E L+++C +K+P++RP T ++ L
Sbjct: 230 SEEAKDLIKKCLNKDPSKRP---TAEEIL 255
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 53.8 bits (129), Expect = 1e-08
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GDFG+ R C + T P P E+LKH + SD W G ++EM A
Sbjct: 147 GDFGVSRLLMGSCDLATTFTGTPYYMSP-EALKHQGYDSKSDIWSLGCILYEMCCL-AHA 204
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
+ G N + ++ +I EG PE ++ ++M+ +K+P+ RP
Sbjct: 205 FEGQNFLSVVLRI-VEGPTPSLPETYSRQLNSIMQSMLNKDPSLRP 249
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 51.4 bits (124), Expect = 8e-08
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCP-WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG + + P W E ++ ++ +A+D W G T+ EM T G
Sbjct: 143 ADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT-GKP 201
Query: 120 PWVGL-NGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
PW L N M L KI GE PE E +R+C ++P +RP L
Sbjct: 202 PWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADEL 254
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 50.5 bits (121), Expect = 1e-07
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 92 LKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVY 151
+ + A+D W G T+ EM T G PW L G+ + KI R E P P+ E
Sbjct: 174 AQQGGYGLAADIWSLGCTVLEMAT-GKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAK 232
Query: 152 ALMRQCWSKNPAERP 166
+ +C ++P+ RP
Sbjct: 233 DFILKCLQRDPSLRP 247
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 48.4 bits (116), Expect = 6e-07
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 36/114 (31%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQ-FSQASDAWMFGVTIWEMFTFGAE 119
DFG+ + +D ++ P + E L +S+ SD W GV ++E+
Sbjct: 135 ADFGLSKLLTSDKSLLKTIVGTP-AYMAPEVLLGKGYYSEKSDIWSLGVILYEL------ 187
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKD 173
E+ L+R+ K+P +RP + +
Sbjct: 188 ----------------------------PELKDLIRKMLQKDPEKRPSAKEILE 213
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 47.6 bits (114), Expect = 1e-06
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQC 157
S ASD W G T+ E+ T G P+ LN M L +I ++ + P PE E+ + QC
Sbjct: 177 STASDIWSLGCTVIELLT-GNPPYYDLNPMAALFRIVQD-DHPPLPEGISPELKDFLMQC 234
Query: 158 WSKNPAERPKFSTL 171
+ K+P RP L
Sbjct: 235 FQKDPNLRPTAKQL 248
>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tyk2 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Tyk2 is widely expressed in
many tissues. It is involved in signaling via the
cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12,
IL-13, and IL-23. It mediates cell surface urokinase
receptor (uPAR) signaling and plays a role in modulating
vascular smooth muscle cell (VSMC) functional behavior
in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 274
Score = 47.6 bits (113), Expect = 2e-06
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 85 PWCPMESLKH-NQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRP 143
PW E + N S A+D W FG T+ E+ G P + + +++ RLP P
Sbjct: 185 PWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKK-HRLPEP 243
Query: 144 EACPVEVYALMRQCWSKNPAERPKFSTL 171
+C E+ L+ QC + P +RP F T+
Sbjct: 244 -SCK-ELATLISQCLTYEPTQRPSFRTI 269
>gnl|CDD|212914 cd11981, SH3_VAV3_1, First Src homology 3 domain of VAV3 protein.
VAV3 is ubiquitously expressed and functions as a
phosphorylation-dependent guanine nucleotide exchange
factor (GEF) for RhoA, RhoG, and Rac1. It has been
implicated to function in the hematopoietic, bone,
cerebellar, and cardiovascular systems. VAV3 is
essential in axon guidance in neurons that control blood
pressure and respiration. It is overexpressed in
prostate cancer cells and it plays a role in regulating
androgen receptor transcriptional activity. VAV proteins
contain several domains that enable their function:
N-terminal calponin homology (CH), acidic, RhoGEF (also
called Dbl-homologous or DH), Pleckstrin Homology (PH),
C1 (zinc finger), SH2, and two SH3 domains. The SH3
domain of VAV is involved in the localization of
proteins to specific sites within the cell, by
interacting with proline-rich sequences within target
proteins. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 62
Score = 43.3 bits (102), Expect = 3e-06
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 198 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
L GD I ++ DP +W+G+NL+T +G FP + + P
Sbjct: 22 LNAQIGDTIEVLYADPHSLFWQGRNLTTGELGFFPSDAVKP 62
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 46.8 bits (111), Expect = 3e-06
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 19/121 (15%)
Query: 61 GDFGMMRYSQNDCYVMTERKPL-PCPWCPME-------SLKHNQFSQASDAWMFGVTIWE 112
GD+G+ + Y+ TE P W E L + ++ S+ W GVT+WE
Sbjct: 141 GDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWE 200
Query: 113 MFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPVEV------YALMRQCWSKNPAER 165
+F A+P+ L+ ++L + ++ + +L +P+ +E+ Y +++ CW +P +R
Sbjct: 201 LFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQ---LELPYSERWYEVLQFCWL-SPEKR 256
Query: 166 P 166
Sbjct: 257 A 257
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 44.2 bits (105), Expect = 2e-05
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 61 GDFGMMRYSQND-----CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFT 115
GDFG+ + +D YV T P P E L H + + SD W G I+E+
Sbjct: 152 GDFGLAKILGHDSSFAKTYVGT-----PYYMSP-EQLNHMSYDEKSDIWSLGCLIYELCA 205
Query: 116 FGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
+ P+ N +Q+ KI +EG+ P E+ +++ + +P +RP L
Sbjct: 206 -LSPPFTARNQLQLASKI-KEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEEL 259
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 44.3 bits (105), Expect = 2e-05
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSK 160
D + GV +WE+FT G P+ L +I I + L P CP+E+ ++ C S
Sbjct: 203 DDIYSLGVVLWEIFT-GKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSH 261
Query: 161 NPAERPKFSTLKDCLYRL 178
+ +RP +K+ LY L
Sbjct: 262 DSIKRP---NIKEILYNL 276
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 44.1 bits (104), Expect = 3e-05
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCP-----WCPMESLKHNQFSQASDAWMFGVTIWEMFTF 116
DFG+ + + + P W E +K +++ +D W G + EM T
Sbjct: 149 DFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLT- 207
Query: 117 GAEPWVGLNGMQILQKIDREGERLPR-PEACPVEVYALMRQCWSKNPAERPKFSTL 171
G P+ +Q + KI P P E + + + + +RP + L
Sbjct: 208 GKHPFPDCTQLQAIFKIG--ENASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAEL 261
>gnl|CDD|212765 cd11831, SH3_VAV_1, First Src homology 3 domain of VAV proteins.
VAV proteins function both as cytoplasmic guanine
nucleotide exchange factors (GEFs) for Rho GTPases and
scaffold proteins and they play important roles in cell
signaling by coupling cell surface receptors to various
effector functions. They play key roles in processes
that require cytoskeletal reorganization including
immune synapse formation, phagocytosis, cell spreading,
and platelet aggregation, among others. Vertebrates have
three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins
contain several domains that enable their function:
N-terminal calponin homology (CH), acidic, RhoGEF (also
called Dbl-homologous or DH), Pleckstrin Homology (PH),
C1 (zinc finger), SH2, and two SH3 domains. The SH3
domain of VAV is involved in the localization of
proteins to specific sites within the cell, by
interacting with proline-rich sequences within target
proteins. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 62
Score = 40.7 bits (95), Expect = 3e-05
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 183 MKATQNCHEI-----DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 237
M QN H L + GD + +++GD E WW+G+N++T +G FP + +
Sbjct: 2 MVVMQNYHGNPPPPGAGGPVLTLQTGDVVELLKGDAESPWWEGRNVATREVGYFPSSSVK 61
Query: 238 P 238
P
Sbjct: 62 P 62
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 43.3 bits (103), Expect = 4e-05
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVE 149
E L + +A D W GV ++EM T G P+ + +I +KI ++ R PE E
Sbjct: 163 EVLLGKGYGKAVDWWSLGVLLYEMLT-GKPPFYAEDRKEIYEKILKDPLRF--PEFLSPE 219
Query: 150 VYALMRQCWSKNPAER 165
L+ K+P +R
Sbjct: 220 ARDLISGLLQKDPTKR 235
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 43.3 bits (103), Expect = 4e-05
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 85 PWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRP 143
W E + + +D W G+T E+ G P+ L M+ L KI G L P
Sbjct: 162 YWMAPEVINGKPYDYKADIWSLGITAIELAE-GKPPYSELPPMKALFKIATNGPPGLRNP 220
Query: 144 EACPVEVYALMRQCWSKNPAERP 166
E E +++C KNP +RP
Sbjct: 221 EKWSDEFKDFLKKCLQKNPEKRP 243
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 43.5 bits (102), Expect = 6e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVE 149
E + ++S+ +D W GV ++E+ T P+ G + +I+Q++ G+ P P CPV
Sbjct: 241 ELWERKRYSKKADMWSLGVILYELLTL-HRPFKGPSQREIMQQV-LYGKYDPFP--CPVS 296
Query: 150 --VYALMRQCWSKNPAERPKFSTL 171
+ AL+ SKNPA RP L
Sbjct: 297 SGMKALLDPLLSKNPALRPTTQQL 320
>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains. Src homology 3 (SH3)
domains bind to target proteins through sequences
containing proline and hydrophobic amino acids.
Pro-containing polypeptides may bind to SH3 domains in 2
different binding orientations.
Length = 56
Score = 39.1 bits (92), Expect = 8e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ +L GD I ++E + WWKG+ G+FP N
Sbjct: 14 QDPDELSFKKGDIITVLE-KSDDGWWKGRLGRG-KEGLFPSN 53
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 41.3 bits (98), Expect = 2e-04
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 87 CPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEAC 146
P E ++ ++ SD W G ++E+ T P+ G N +++ KI +G+ P P
Sbjct: 171 SP-ELCQNKPYNYKSDIWSLGCVLYELCT-LKHPFEGENLLELALKI-LKGQYPPIPSQY 227
Query: 147 PVEVYALMRQCWSKNPAERP 166
E+ L+ K+P ERP
Sbjct: 228 SSELRNLVSSLLQKDPEERP 247
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 41.7 bits (98), Expect = 2e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQC 157
+Q++D W FGV ++EM T G+ P+ G + + + I + +L P+ E +L+R
Sbjct: 176 TQSADWWSFGVLMFEMLT-GSLPFQGKDRKETMTMILK--AKLGMPQFLSPEAQSLLRAL 232
Query: 158 WSKNPAER 165
+ +NPA R
Sbjct: 233 FKRNPANR 240
>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily. Src Homology 3
(SH3) domains are protein interaction domains that bind
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. Thus, they
are referred to as proline-recognition domains (PRDs).
SH3 domains are less selective and show more diverse
specificity compared to other PRDs. They have been shown
to bind peptide sequences that lack the PxxP motif;
examples include the PxxDY motif of Eps8 and the
RKxxYxxY sequence in SKAP55. SH3 domain containing
proteins play versatile and diverse roles in the cell,
including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies, among others. Many members of this
superfamily are adaptor proteins that associate with a
number of protein partners, facilitating complex
formation and signal transduction.
Length = 51
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++ +L GD I ++E D + WW+G+ G+FP N
Sbjct: 11 QDDDELSFKKGDIITVLEKDDD-GWWEGELNGG-REGLFPAN 50
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 40.7 bits (96), Expect = 4e-04
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 86 WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKI-DREGERLPRPE 144
W E +K + + + +D W G+T E+ G P L+ M++L I L +
Sbjct: 164 WMAPEVIKQSGYDEKADIWSLGITAIELAK-GEPPLSDLHPMRVLFLIPKNNPPSLEGNK 222
Query: 145 ACPVEVYALMRQCWSKNPAERPKFSTL 171
+ C +K+P ERP L
Sbjct: 223 FSK-PFKDFVSLCLNKDPKERPSAKEL 248
>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Janus kinase 1. Protein
Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak1 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak1 is widely expressed in
many tissues. Many cytokines are dependent on Jak1 for
signaling, including those that use the shared receptor
subunits common gamma chain (IL-2, IL-4, IL-7, IL-9,
IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M,
G-CSF, and IFNs, among others). The many varied
interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 262
Score = 40.3 bits (94), Expect = 4e-04
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 69 SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQ 128
S+ +C ER P P C +S S A+D W FG T+WE+ G P L
Sbjct: 164 SRQEC---VERIPWIAPECVEDS---KNLSIAADKWSFGTTLWEICYNGEIP---LKDKT 214
Query: 129 ILQKIDR--EGERLPRPEACPVEVYALMRQCWSKNPAERPKF 168
+ +K +R EG+ + +C E+ LM C + +P +RP F
Sbjct: 215 LAEK-ERFYEGQCMLVTPSCK-ELADLMTHCMNYDPNQRPFF 254
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 40.3 bits (95), Expect = 5e-04
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 87 CPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKI-DREGERLPRPEA 145
P E L ++SD W G I++M T G P+ G N QKI E P
Sbjct: 190 SP-ELLNEKPAGKSSDLWALGCIIYQMLT-GKPPFRGSNEYLTFQKILKLE---YSFPPN 244
Query: 146 CPVEVYALMRQCWSKNPAERP 166
P + L+ + +P +R
Sbjct: 245 FPPDAKDLIEKLLVLDPQDRL 265
>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like
proteins. This subfamily includes the Saccharomyces
cerevisiae proteins BOI1 and BOI2, and similar proteins.
They contain an N-terminal SH3 domain, a Sterile alpha
motif (SAM), and a Pleckstrin homology (PH) domain at
the C-terminus. BOI1 and BOI2 interact with the SH3
domain of Bem1p, a protein involved in bud formation.
They promote polarized cell growth and participates in
the NoCut signaling pathway, which is involved in the
control of cytokinesis. SH3 domains bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs; they play a role in the
regulation of enzymes by intramolecular interactions,
changing the subcellular localization of signal pathway
components and mediate multiprotein complex assemblies.
Length = 55
Score = 36.9 bits (86), Expect = 5e-04
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 195 EGKLYIDAGDQIVIIEGDPECH--WWKGQNLSTFNIGMFPRN 234
E +L + GD+I +IE D E W+ G+NL T G+FP
Sbjct: 13 EDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVV 54
>gnl|CDD|212912 cd11979, SH3_VAV1_1, First Src homology 3 domain of VAV1 protein.
VAV1 is expressed predominantly in the hematopoietic
system and it plays an important role in the development
and activation of B and T cells. It is activated by
tyrosine phosphorylation to function as a guanine
nucleotide exchange factor (GEF) for Rho GTPases
following cell surface receptor activation, triggering
various effects such as cytoskeletal reorganization,
transcription regulation, cell cycle progression, and
calcium mobilization. It also serves as a scaffold
protein and has been shown to interact with Ku70, Socs1,
Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76,
and Syk, among others. VAV proteins contain several
domains that enable their function: N-terminal calponin
homology (CH), acidic, RhoGEF (also called
Dbl-homologous or DH), Pleckstrin Homology (PH), C1
(zinc finger), SH2, and two SH3 domains. The first SH3
domain of Vav1 has been shown to bind the adaptor
protein Grb2. SH3 domains are protein interaction
domains that bind to proline-rich ligands with moderate
affinity and selectivity, preferentially to PxxP motifs.
They play versatile and diverse roles in the cell
including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 63
Score = 36.5 bits (84), Expect = 9e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 198 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
L ++ GD + + + + E +WW+G+N ST IG FP N + P
Sbjct: 22 LRLNPGDIVELTKAEAEQNWWEGRNTSTNEIGWFPCNRVKP 62
>gnl|CDD|212913 cd11980, SH3_VAV2_1, First Src homology 3 domain of VAV2 protein.
VAV2 is widely expressed and functions as a guanine
nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG
and also activates Rac1 and Cdc42. It is implicated in
many cellular and physiological functions including
blood pressure control, eye development, neurite
outgrowth and branching, EGFR endocytosis and
degradation, and cell cluster morphology, among others.
It has been reported to associate with Nek3. VAV
proteins contain several domains that enable their
function: N-terminal calponin homology (CH), acidic,
RhoGEF (also called Dbl-homologous or DH), Pleckstrin
Homology (PH), C1 (zinc finger), SH2, and two SH3
domains. The SH3 domain of VAV is involved in the
localization of proteins to specific sites within the
cell, by interacting with proline-rich sequences within
target proteins. SH3 domains are protein interaction
domains that bind to proline-rich ligands with moderate
affinity and selectivity, preferentially to PxxP motifs.
They play versatile and diverse roles in the cell
including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 60
Score = 36.5 bits (84), Expect = 0.001
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 183 MKATQNCH-EIDEEGK--LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
M A QN H GK L GD I ++ GDP+ WW+G+ L T G FP + + P
Sbjct: 2 MVAVQNYHGNPAPPGKPVLTFQTGDVIELLRGDPDSPWWEGRLLQTKKSGYFPSSSVKP 60
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 39.2 bits (91), Expect = 0.001
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 61 GDFGMMRYSQND-----CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFT 115
GDFG R + YV T P W E++ +N SD W G ++E+ T
Sbjct: 142 GDFGSARLLTSPGAYACTYVGTPYYVPPEIW---ENMPYNN---KSDIWSLGCILYELCT 195
Query: 116 ----FGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
F A W L IL+ +G P P E+ +L++Q + +NP RP +T+
Sbjct: 196 LKHPFQANSWKNL----ILKVC--QGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTI 249
>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine
Kinase. Lck is a member of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) PTKs.
Lck is expressed in T-cells and natural killer cells. It
plays a critical role in T-cell maturation, activation,
and T-cell receptor (TCR) signaling. Lck phosphorylates
ITAM (immunoreceptor tyr activation motif) sequences on
several subunits of TCRs, leading to the activation of
different second messenger cascades. Phosphorylated
ITAMs serve as binding sites for other signaling factor
such as Syk and ZAP-70, leading to their activation and
propagation of downstream events. In addition, Lck
regulates drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Src kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). The SH3
domain of Src kinases contributes to substrate
recruitment by binding adaptor proteins/substrates, and
regulation of kinase activity through an intramolecular
interaction. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 54
Score = 36.0 bits (83), Expect = 0.001
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+E +G L + G+++ I+E E WWK Q+L+T G P N
Sbjct: 8 YEPSHDGDLGFEKGEKLRILEQSGE--WWKAQSLTTGQEGFIPFN 50
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 39.1 bits (91), Expect = 0.001
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
Query: 62 DFGMMRYSQND---CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ N YV T P E + Q+ SD W G++ E+ G
Sbjct: 138 DFGVSTQLVNSIAKTYVGTNAYMAP------ERISGEQYGIHSDVWSLGISFMEL-ALGR 190
Query: 119 EPWVGLNG-------MQILQKI-DREGERLPRPEACPVEVYALMRQCWSKNPAERPKFST 170
P+ + +Q+LQ I D + LP + V+ + QC K P ERP
Sbjct: 191 FPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVH-FITQCMRKQPKERPAPEN 249
Query: 171 LKD 173
L D
Sbjct: 250 LMD 252
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 38.6 bits (90), Expect = 0.001
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPLP-CP-WCPMESLKHNQFSQASDAWMFG 107
IL S+ + GDFG + Q C T K + P W E + + + +D W G
Sbjct: 135 ILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVG 194
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
T+ EM T PW M + KI + P + +R+ + +N +RP
Sbjct: 195 CTVVEMLT-EKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRP 252
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 38.9 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVE 149
E L +++A D W GV I+EM G P+ G + ++ I + R PR E
Sbjct: 171 EVLTETSYTRAVDWWGLGVLIYEML-VGESPFPGDDEEEVFDSIVNDEVRYPR--FLSRE 227
Query: 150 VYALMRQCWSKNPAER 165
++MR+ +NP R
Sbjct: 228 AISIMRRLLRRNPERR 243
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 38.6 bits (90), Expect = 0.001
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQ 156
+++ SD W GV ++E T G P+ N ++ KI R G P + ++ L+ Q
Sbjct: 178 YNEKSDVWALGVVLYECCT-GKHPFDANNQGALILKIIR-GVFPPVSQMYSQQLAQLIDQ 235
Query: 157 CWSKNPAERPKFSTL 171
C +K+ +RP L
Sbjct: 236 CLTKDYRQRPDTFQL 250
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 38.6 bits (90), Expect = 0.002
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 89 MESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPV 148
+ +S D W G + EMF G PW + + K+ + P P +
Sbjct: 181 VIHSYSQGYSAKVDIWSLGCVVLEMFA-GRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSM 239
Query: 149 EV----YALMRQCWSKNPAERP 166
+ + C++ NP RP
Sbjct: 240 NLSPVALDFLNACFTINPDNRP 261
>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) domains are
often indicative of a protein involved in signal
transduction related to cytoskeletal organisation. First
described in the Src cytoplasmic tyrosine kinase. The
structure is a partly opened beta barrel.
Length = 47
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFP 232
E +L GD I+++E + WWKG+ G+ P
Sbjct: 10 EPDELSFKKGDIIIVLE-KSDDGWWKGRLK-GGKEGLIP 46
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 38.1 bits (88), Expect = 0.002
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDR-EGERLPRPEACPV 148
E++K + +D W G+T+ EM P LN M++L KI + E L +P +
Sbjct: 185 ETMKDTPYDYKADIWSLGITLIEMAQI-EPPHHELNPMRVLLKIAKSEPPTLSQPSKWSM 243
Query: 149 EVYALMRQCWSKNPAERPKFSTLKDCLYRLTPAVMKATQN 188
E ++ K+P RP + L + P V T N
Sbjct: 244 EFRDFLKTALDKHPETRPSAAQLLE-----HPFVSSVTSN 278
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 37.6 bits (87), Expect = 0.003
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 86 WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR-PE 144
W E + + + + SD W G T++EM T G P ++ + + I +PR P+
Sbjct: 174 WMAPEVINESGYGRKSDIWSIGCTVFEMAT-GKPPLASMDRLAAMFYIGAHRGLMPRLPD 232
Query: 145 ACPVEVYALMRQCWSKNPAERP 166
+ + C +++ ERP
Sbjct: 233 SFSAAAIDFVTSCLTRDQHERP 254
>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like
Protein Tyrosine Kinases. Src subfamily members include
Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) PTKs which are anchored to the plasma
membrane. They contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). However,
Brk lacks the N-terminal myristoylation sites. Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells, and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, Lyn, and Brk show a limited expression
pattern. This subfamily also includes Drosophila Src42A,
Src oncogene at 42A (also known as Dsrc41) which
accumulates at sites of cell-cell or cell-matrix
adhesion, and participates in Drosphila development and
wound healing. It has been shown to promote tube
elongation in the tracheal system, is essential for
proper cell-cell matching during dorsal closure, and
regulates cell-cell contacts in developing Drosophila
eyes. The SH3 domain of Src kinases contributes to
substrate recruitment by binding adaptor
proteins/substrates, and regulation of kinase activity
through an intramolecular interaction. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 52
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 195 EGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ L GD++ I++ D + WW ++LST G P N
Sbjct: 13 DDDLSFKKGDRLQILD-DSDGDWWLARHLSTGKEGYIPSN 51
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 37.4 bits (87), Expect = 0.004
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 92 LKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGM--QILQKIDREGERLPRPEACPVE 149
L + SD W G+T+ E+ T G P+ Q+ Q ++ +LP E E
Sbjct: 179 LNQKGYDVKSDVWSLGITMIELAT-GRFPYDSWKTPFQQLKQVVEEPSPQLPA-EKFSPE 236
Query: 150 VYALMRQCWSKNPAERPKFSTL 171
+ +C KN ERP + L
Sbjct: 237 FQDFVNKCLKKNYKERPNYPEL 258
>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and
related proteins. This subfamily includes cortactin,
Abp1 (actin-binding protein 1), hematopoietic lineage
cell-specific protein 1 (HS1), and similar proteins.
These proteins are involved in regulating actin dynamics
through direct or indirect interaction with the Arp2/3
complex, which is required to initiate actin
polymerization. They all contain at least one C-terminal
SH3 domain. Cortactin and HS1 bind Arp2/3 and actin
through an N-terminal region that contains an acidic
domain and several copies of a repeat domain found in
cortactin and HS1. Abp1 binds actin via an N-terminal
actin-depolymerizing factor (ADF) homology domain. Yeast
Abp1 binds Arp2/3 directly through two acidic domains.
Mammalian Abp1 does not directly interact with Arp2/3;
instead, it regulates actin dynamics indirectly by
interacting with dynamin and WASP family proteins. The
C-terminal region of these proteins acts as an adaptor
or scaffold that can connect membrane trafficking and
signaling proteins that bind the SH3 domain within the
actin network. SH3 domains are protein interaction
domains that bind to proline-rich ligands with moderate
affinity and selectivity, preferentially to PxxP motifs.
They play versatile and diverse roles in the cell
including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 54
Score = 34.2 bits (79), Expect = 0.004
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++ E+ ++ GD I IE E WW G N + G+FP N
Sbjct: 8 YQAAEDNEISFVEGDIITQIEQIDE-GWWLGVN-AKGQKGLFPAN 50
>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth
factor receptor-bound protein 2. GRB2 is a critical
signaling molecule that regulates the Ras pathway by
linking tyrosine kinases to the Ras guanine nucleotide
releasing protein Sos (son of sevenless), which converts
Ras to the active GTP-bound state. It is ubiquitously
expressed in all tissues throughout development and is
important in cell cycle progression, motility,
morphogenesis, and angiogenesis. In lymphocytes, GRB2 is
associated with antigen receptor signaling components.
GRB2 contains an N-terminal SH3 domain, a central SH2
domain, and a C-terminal SH3 domain. The C-terminal SH3
domain of GRB2 binds to Gab2 (Grb2-associated binder 2)
through epitopes containing RxxK motifs, as well as to
the proline-rich C-terminus of FGRF2. SH3 domains are
protein interaction domains that typically bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 53
Score = 34.0 bits (78), Expect = 0.006
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
E+G+L GD I +++ + + +WWKG GMFPRN + P
Sbjct: 12 EDGELGFRRGDFIEVMD-NSDPNWWKGACHG--QTGMFPRNYVTP 53
>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing
Adaptor Molecule 2. STAM2, also called EAST (Epidermal
growth factor receptor-associated protein with SH3 and
TAM domain) or Hbp (Hrs binding protein), is part of the
endosomal sorting complex required for transport
(ESCRT-0). It plays a role in sorting mono-ubiquinated
endosomal cargo for trafficking to the lysosome for
degradation. It is also involved in the regulation of
exocytosis. STAMs were discovered as proteins that are
highly phosphorylated following cytokine and growth
factor stimulation. They function in cytokine signaling
and surface receptor degradation, as well as regulate
Golgi morphology. They associate with many proteins
including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and
UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs,
STAM homology), ubiquitin interacting (UIM), and SH3
domains. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 57
Score = 33.8 bits (77), Expect = 0.008
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 191 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 236
E E+ +L G+ I++++ D + +WWKG+N +G+FP N +
Sbjct: 11 EAVEDNELTFKHGEIIIVLD-DSDANWWKGENHR--GVGLFPSNFV 53
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 36.3 bits (84), Expect = 0.009
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNG-----------MQILQKIDRE-G 137
E ++ +++ SD W G++I E+ G P+ N + +LQ+I +E
Sbjct: 172 ERIQGGKYTVKSDVWSLGISIIELAL-GKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPP 230
Query: 138 ERLPRPEACPVEVYALMRQCWSKNPAERP 166
RLP P ++ + C K+P ERP
Sbjct: 231 PRLPS-SDFPEDLRDFVDACLLKDPTERP 258
>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing
Adaptor Molecule 1. STAM1 is part of the endosomal
sorting complex required for transport (ESCRT-0) and is
involved in sorting ubiquitinated cargo proteins from
the endosome. It may also be involved in the regulation
of IL2 and GM-CSF mediated signaling, and has been
implicated in neural cell survival. STAMs were
discovered as proteins that are highly phosphorylated
following cytokine and growth factor stimulation. They
function in cytokine signaling and surface receptor
degradation, as well as regulate Golgi morphology. They
associate with many proteins including Jak2 and Jak3
tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor
proteins contain VHS (Vps27, Hrs, STAM homology),
ubiquitin interacting (UIM), and SH3 domains. SH3
domains are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 55
Score = 33.4 bits (76), Expect = 0.010
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 191 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 236
E E+ +L AGD I I++ D + +WWKG+ + G+FP N +
Sbjct: 10 EAAEDNELTFKAGDIITILD-DSDPNWWKGE--TPQGTGLFPSNFV 52
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 36.2 bits (83), Expect = 0.010
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ + D M P P E L+ N + +A D W GV ++EM G P+
Sbjct: 139 DFGLCKEGIKDGATMKTFCGTPEYLAP-EVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPF 196
Query: 122 VGLNGMQILQKIDREGERLPR---PEACPVEVYALMRQCWSKNPAER 165
+ ++ + I E R PR PEA +L+ K+P +R
Sbjct: 197 YNQDHEKLFELILMEEIRFPRTLSPEA-----KSLLSGLLKKDPKQR 238
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 36.0 bits (84), Expect = 0.012
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGLNG---MQILQKI-DREGERLPRPEACPVEVYAL 153
S A+D W G+T+ E G P++ +++Q I D LP E E
Sbjct: 178 SYAADIWSLGLTLLECAL-GKFPFLPPGQPSFFELMQAICDGPPPSLP-AEEFSPEFRDF 235
Query: 154 MRQCWSKNPAERP 166
+ C K+P +RP
Sbjct: 236 ISACLQKDPKKRP 248
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 35.7 bits (82), Expect = 0.013
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GD G+ R +N C + + P P E + ++ SD W G ++EM T
Sbjct: 144 GDLGIARVLENQCDMASTLIGTPYYMSP-ELFSNKPYNYKSDVWALGCCVYEMATLKH-- 200
Query: 121 WVGLNGMQILQKIDR--EGERLPRPEACPVEVYALMRQCWSKNPAERP 166
N + + R EG+ P P+ E+ L+ SK P +RP
Sbjct: 201 --AFNAKDMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRP 246
>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing
Adaptor Molecules. STAMs were discovered as proteins
that are highly phosphorylated following cytokine and
growth factor stimulation. They function in cytokine
signaling and surface receptor degradation, as well as
regulate Golgi morphology. They associate with many
proteins including Jak2 and Jak3 tyrosine kinases, Hrs,
AMSH, and UBPY. STAM adaptor proteins contain VHS
(Vps27, Hrs, STAM homology), ubiquitin interacting
(UIM), and SH3 domains. There are two vertebrate STAMs,
STAM1 and STAM2, which may be functionally redundant;
vertebrate STAMs contain ITAM motifs. They are part of
the endosomal sorting complex required for transport
(ESCRT-0). STAM2 deficiency in mice did not cause any
obvious abnormality, while STAM1 deficiency resulted in
growth retardation. Loss of both STAM1 and STAM2 in mice
proved lethal, indicating that STAMs are important for
embryonic development. SH3 domains are protein
interaction domains that bind to proline-rich ligands
with moderate affinity and selectivity, preferentially
to PxxP motifs. They play versatile and diverse roles in
the cell including the regulation of enzymes, changing
the subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 54
Score = 32.8 bits (75), Expect = 0.013
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 191 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E E+ +L AG+ I +++ D + +WWKG N G+FP N
Sbjct: 10 EAAEDNELTFKAGEIITVLD-DSDPNWWKGSNHR--GEGLFPAN 50
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 35.5 bits (82), Expect = 0.014
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPM----ESLKHNQFSQASDAWMFGVTIWEMFTF 116
GDFG+ + Y M E P E + +++ SD W G ++E+ T
Sbjct: 143 GDFGISK-ILGSEYSMAE----TVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTL 197
Query: 117 GAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
+ N + ++ KI +G P E+ +L+ ++P +RP
Sbjct: 198 -KRTFDATNPLNLVVKI-VQGNYTPVVSVYSSELISLVHSLLQQDPEKRP 245
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 35.6 bits (82), Expect = 0.018
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVG---LNGMQILQKIDREGERLPRPEAC 146
E L+ Q+ ++ D W G I EM T PW N + ++ KI PE
Sbjct: 178 EVLRGEQYGRSCDVWSVGCVIIEMAT-AKPPWNAEKHSNHLALIFKIASATTAPSIPEHL 236
Query: 147 PVEVYALMRQCWSKNPAERPK 167
+ + +C P +RP
Sbjct: 237 SPGLRDVTLRCLELQPEDRPP 257
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 35.8 bits (82), Expect = 0.018
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ + +D M P P E L+ N + +A D W GV ++EM G P+
Sbjct: 138 DFGLCKEGISDGATMKTFCGTPEYLAP-EVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPF 195
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
+ ++ + I E R PR E +L+ K+P +R
Sbjct: 196 YNQDHERLFELILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQR 237
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 35.4 bits (82), Expect = 0.020
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEM----FTFGAEPWVGLNGMQILQKI-DREGERLPRPE 144
E ++ N +S SD W G+++ E+ F + E ++LQ I + RLP +
Sbjct: 169 ERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGK 228
Query: 145 ACPVEVYALMRQCWSKNPAERPKFSTL 171
P + + C K+P ERP + L
Sbjct: 229 FSP-DFQDFVNLCLIKDPRERPSYKEL 254
>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C
and Casein kinase Substrate in Neurons 1 (PACSIN1) and
PACSIN 2. PACSIN 1 or Syndapin I (Synaptic
dynamin-associated protein I) is expressed specifically
in the brain and is localized in neurites and synaptic
boutons. It binds the brain-specific proteins dynamin I,
synaptojanin, synapsin I, and neural Wiskott-Aldrich
syndrome protein (nWASP), and functions as a link
between the cytoskeletal machinery and synaptic vesicle
endocytosis. PACSIN 1 interacts with huntingtin and may
be implicated in the neuropathology of Huntington's
disease. PACSIN 2 or Syndapin II is expressed
ubiquitously and is involved in the regulation of
tubulin polymerization. It associates with Golgi
membranes and forms a complex with dynamin II which is
crucial in promoting vesicle formation from the
trans-Golgi network. PACSINs act as regulators of
cytoskeletal and membrane dynamics. Vetebrates harbor
three isoforms with distinct expression patterns and
specific functions. PACSINs contain an N-terminal F-BAR
domain and a C-terminal SH3 domain. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 56
Score = 32.2 bits (73), Expect = 0.022
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
++ E+ +L AGD++ +E + E W KG+ L + +G++P N ++P
Sbjct: 9 YDGQEQDELSFKAGDELTKLEDEDEQGWCKGR-LDSGQVGLYPANYVEP 56
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 35.1 bits (81), Expect = 0.022
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDR-EGERLPRPEACPV 148
E+ K N + +D W G+T+ E+ P LN M++L KI + E L +P
Sbjct: 178 ETFKDNPYDYKADIWSLGITLIELAQ-MEPPHHELNPMRVLLKILKSEPPTLDQPSKWSS 236
Query: 149 EVYALMRQCWSKNPAERP 166
++ C K+P +RP
Sbjct: 237 SFNDFLKSCLVKDPDDRP 254
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 34.7 bits (79), Expect = 0.028
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTE-RKPLPCP-WCPMESLKHNQFSQASDAWMFG 107
IL S+ + GDFG + Q C T R P W E + + + +D W G
Sbjct: 137 ILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLG 196
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRP 143
T+ EM T PW M + KI + P
Sbjct: 197 CTVVEMLT-EKPPWAEYEAMAAIFKIATQPTNPQLP 231
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 34.4 bits (79), Expect = 0.032
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQ-FSQASDAWMFGVTIWEMFTFGAE 119
GDFG+ R + V R + P+ + N+ ++ SD W G ++EM T
Sbjct: 143 GDFGIARVLNST--VELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHA 200
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
G N ++ KI R G P ++ L+ Q + +NP +RP +++
Sbjct: 201 FEAG-NMKNLVLKIIR-GSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSI 250
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 34.3 bits (79), Expect = 0.040
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNG-MQILQKI-DREGERLPRPEACPVEVYALMRQCW 158
+D W G+++ E+ T G P+ ++L KI E LP E + + + C
Sbjct: 199 ADVWSLGISLVELAT-GQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCL 257
Query: 159 SKNPAERPKFSTL 171
+K+ +RPK+ L
Sbjct: 258 TKDHRKRPKYREL 270
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 34.2 bits (78), Expect = 0.042
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPVEVYALMR 155
+ D W G+T E+ G P L+ M+ L KI R L +PE E +R
Sbjct: 206 YDARCDVWSLGITAIELGD-GDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIR 264
Query: 156 QCWSKNPAERPKFSTL 171
+C +K+ +RP S L
Sbjct: 265 KCLTKDYEKRPTVSDL 280
>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C)
of Intersectin-1. Intersectin-1 (ITSN1) is an adaptor
protein that functions in exo- and endocytosis, actin
cytoskeletal reorganization, and signal transduction. It
plays a role in clathrin-coated pit (CCP) formation. It
binds to many proteins through its multidomain structure
and facilitate the assembly of multimeric complexes.
ITSN1 localizes in membranous organelles, CCPs, the
Golgi complex, and may be involved in the cell membrane
trafficking system. It exists in alternatively spliced
short and long isoforms. The short isoform contains two
Eps15 homology domains (EH1 and EH2), a coiled-coil
region and five SH3 domains (SH3A-E), while the long
isoform, in addition, contains RhoGEF (also called
Dbl-homologous or DH), Pleckstrin homology (PH) and C2
domains. The third SH3 domain (or SH3C) of ITSN1 has
been shown to bind many proteins including dynamin1/2,
CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK,
among others. SH3 domains are protein interaction
domains that bind to proline-rich ligands with moderate
affinity and selectivity, preferentially to PxxP motifs.
They play versatile and diverse roles in the cell
including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 52
Score = 31.5 bits (71), Expect = 0.044
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
+E +E+G L GD I++ + D + WW G G+FP N + P
Sbjct: 8 YESNEQGDLTFQQGDVILVTKKDGD--WWTGT--VGDKTGVFPSNYVRP 52
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 34.0 bits (78), Expect = 0.044
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ + Q + +T CP E +K+ + + +D W FG +++M T P+
Sbjct: 157 DFGLAKQKQPESK-LTSVVGTILYSCP-EIVKNEPYGEKADVWAFGCILYQMCTL-QPPF 213
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVE-VYALMRQCWSKNPAERP 166
N + + KI E P PE E V ++ C + + RP
Sbjct: 214 YSTNMLSLATKI-VEAVYEPLPEGMYSEDVTDVITSCLTPDAEARP 258
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 34.2 bits (79), Expect = 0.048
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 100 ASDAWMFGVTIWEMFTFGAEPWVGL-NGMQILQKIDREGER--LPRPEACPVEVYALMRQ 156
A+D W G + EM T G PW L N QI+ + G + +P E + +
Sbjct: 186 AADIWSLGCVVLEMAT-GKRPWSELDNEFQIMFHVG-AGHKPPIPDSLQLSPEGKDFLDR 243
Query: 157 CWSKNPAERPKFSTL 171
C +P +RP S L
Sbjct: 244 CLESDPKKRPTASEL 258
>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting
proteins 1 and 2, and similar domains. JNK-interacting
proteins (JIPs) function as scaffolding proteins for
c-Jun N-terminal kinase (JNK) signaling pathways. They
bind to components of Mitogen-activated protein kinase
(MAPK) pathways such as JNK, MKK, and several MAP3Ks
such as MLK and DLK. There are four JIPs (JIP1-4); all
contain a JNK binding domain. JIP1 and JIP2 also contain
SH3 and Phosphotyrosine-binding (PTB) domains. Both are
highly expressed in the brain and pancreatic beta-cells.
JIP1 functions as an adaptor linking motor to cargo
during axonal transport and also is involved in
regulating insulin secretion. JIP2 form complexes with
fibroblast growth factor homologous factors (FHFs),
which facilitates activation of the p38delta MAPK. The
SH3 domain of JIP1 homodimerizes at the interface
usually involved in proline-rich ligand recognition,
despite the lack of this motif in the domain itself. SH3
domains are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 55
Score = 31.5 bits (72), Expect = 0.048
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFP 232
HE DE + +D GD + + + + + W +G NL T G+FP
Sbjct: 12 HE-DE---IELDIGDPVYVEQ-EADDLWCEGTNLRTGQRGIFP 49
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 33.9 bits (78), Expect = 0.057
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVE 149
E L + + A D W GV ++EM G P+ G + ++ Q I + R PR E
Sbjct: 166 EILSYQPYGPAVDWWALGVLLYEMLA-GQSPFEGDDEDELFQSILEDEVRYPR--WLSKE 222
Query: 150 VYALMRQCWSKNPAER 165
++++ +KNP +R
Sbjct: 223 AKSILKSFLTKNPEKR 238
>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and
similar fungal proteins. This family is composed of the
Saccharomyces cerevisiae proteins, Ysc84p (also called
LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar
fungal proteins. They contain an N-terminal SYLF domain
(also called DUF500) and a C-terminal SH3 domain. Ysc84p
localizes to actin patches and plays an important in
actin polymerization during endocytosis. The N-terminal
domain of both Ysc84p and Lsb3p can bind and bundle
actin filaments. A study of the yeast SH3 domain
interactome predicts that the SH3 domains of Lsb3p and
Lsb4p may function as molecular hubs for the assembly of
endocytic complexes. SH3 domains are protein interaction
domains that bind to proline-rich ligands with moderate
affinity and selectivity, preferentially to PxxP motifs.
They play versatile and diverse roles in the cell
including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 55
Score = 30.9 bits (70), Expect = 0.071
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 193 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRNIMD 237
++ G L GD I I++ D + WW G+ G+FP N ++
Sbjct: 11 EQPGDLAFQKGDIITILKKSDSQNDWWTGR--IGGREGIFPANYVE 54
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 33.5 bits (76), Expect = 0.073
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPLPCP--WCPMESLKHNQFSQASDAWMFG 107
IL S + GDFG + Q C T K + W E + + + +D W G
Sbjct: 137 ILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVG 196
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKI 133
T+ EM T PW M + KI
Sbjct: 197 CTVVEMLT-EKPPWAEFEAMAAIFKI 221
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 33.4 bits (77), Expect = 0.088
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 62 DFGMMRYSQNDCYVMTERKPL---PCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ S M +R + P W E ++ ++ +D W G+T EM G
Sbjct: 142 DFGV---SGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYNNKADIWSLGITAIEMAE-GK 196
Query: 119 EPWVGLNGMQILQKI-DREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
P+ ++ M+ + I ++ L PE E +++C K+P ERP
Sbjct: 197 PPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERP 245
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 33.5 bits (76), Expect = 0.091
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG+ + D M P P E L+ N + +A D W GV ++EM G P+
Sbjct: 138 DFGLCKEGITDAATMKTFCGTPEYLAP-EVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPF 195
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
+ ++ + I E + PR + + +L+ K+P +R
Sbjct: 196 YNQDHEKLFELILMEDIKFPRTLSA--DAKSLLSGLLIKDPNKR 237
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 33.4 bits (76), Expect = 0.096
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFGM + + D P P E + + + ++ D W FGV ++EM G P
Sbjct: 143 ADFGMCKENMWDGVTTKTFCGTPDYIAP-EIIAYQPYGKSVDWWAFGVLLYEMLA-GQAP 200
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
+ G + ++ Q I + P++ E A+ + +K+P +R
Sbjct: 201 FEGEDEDELFQSIME--HNVAYPKSMSKEAVAICKGLMTKHPGKR 243
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 33.0 bits (76), Expect = 0.099
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAE---PWVGLNGMQILQKIDREGERLPR---PEACPVEV 150
+ D W G+T E+ AE P L+ M+ L I + P+ E
Sbjct: 181 YDGKCDIWALGITAIEL----AELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVF 236
Query: 151 YALMRQCWSKNPAERPKFSTL 171
+ +++C +K+P +RP + L
Sbjct: 237 HDFIKKCLTKDPKKRPTATKL 257
>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C)
of Intersectin. Intersectins (ITSNs) are adaptor
proteins that function in exo- and endocytosis, actin
cytoskeletal reorganization, and signal transduction.
They are essential for initiating clathrin-coated pit
formation. They bind to many proteins through their
multidomain structure and facilitate the assembly of
multimeric complexes. Vertebrates contain two ITSN
proteins, ITSN1 and ITSN2, which exist in alternatively
spliced short and long isoforms. The short isoforms
contain two Eps15 homology domains (EH1 and EH2), a
coiled-coil region and five SH3 domains (SH3A-E), while
the long isoforms, in addition, contain RhoGEF (also
called Dbl-homologous or DH), Pleckstrin homology (PH)
and C2 domains. ITSN1 and ITSN2 are both widely
expressed, with variations depending on tissue type and
stage of development. The third SH3 domain (or SH3C) of
ITSN1 has been shown to bind many proteins including
dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1,
and WNK, among others. The SH3C of ITSN2 has been shown
to bind the K15 protein of Kaposi's sarcoma-associated
herpesvirus. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 52
Score = 30.5 bits (69), Expect = 0.10
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 191 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
E +E G L +AGD I++ + D E WW G G+FP N + P
Sbjct: 9 ESNEPGDLTFNAGDVILVTKKDGE--WWTGTIGD--RTGIFPSNYVRP 52
>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of
GRB2-related adaptor protein. GRAP is a GRB-2 like
adaptor protein that is highly expressed in lymphoid
tissues. It acts as a negative regulator of T cell
receptor (TCR)-induced lymphocyte proliferation by
downregulating the signaling to the Ras/ERK pathway. It
has been identified as a regulator of TGFbeta signaling
in diabetic kidney tubules and may have a role in the
pathogenesis of the disease. GRAP contains an N-terminal
SH3 domain, a central SH2 domain, and a C-terminal SH3
domain. The C-terminal SH3 domains (SH3c) of the related
proteins, GRB2 and GRAP2, have been shown to bind to
classical PxxP motif ligands, as well as to
non-classical motifs. GRB2 SH3c binds Gab2
(Grb2-associated binder 2) through epitopes containing
RxxK motifs, while the SH3c of GRAP2 binds to the
phosphatase-like protein HD-PTP via a RxxxxK motif. SH3
domains are protein interaction domains that typically
bind to proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 53
Score = 30.2 bits (68), Expect = 0.11
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
++ +L GD I +++ P+ +WW+G+ + +G FPRN + P
Sbjct: 11 EDPSQLSFRRGDIIEVLDC-PDPNWWRGR--ISGRVGFFPRNYVHP 53
>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain
containing ring finger 1, an E3 ubiquitin-protein
ligase. SH3RF1 is also called POSH (Plenty of SH3s) or
SH3MD2 (SH3 multiple domains protein 2). It is a
scaffold protein that acts as an E3 ubiquitin-protein
ligase. It plays a role in calcium homeostasis through
the control of the ubiquitin domain protein Herp. It may
also have a role in regulating death receptor mediated
and JNK mediated apoptosis. SH3RF1 also enhances the
ubiquitination of ROMK1 potassium channel resulting in
its increased endocytosis. It contains an N-terminal
RING finger domain and four SH3 domains. This model
represents the third SH3 domain, located in the middle,
of SH3RF1. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 55
Score = 29.9 bits (67), Expect = 0.15
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECH--WWKGQNLSTFNIGMFPRNIMDP 238
+E +L + G+ ++ E C W+KG ++ T IG+FP N + P
Sbjct: 12 KEDELELRKGEMFLVFE---RCQDGWFKGTSMHTSKIGVFPGNYVAP 55
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 32.3 bits (73), Expect = 0.16
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 50 ILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPLPCP--WCPMESLKHNQFSQASDAWMFG 107
IL S+ + GDFG + Q C T K + W E + + + +D W
Sbjct: 137 ILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVA 196
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQ 156
T+ EM T PW M + KI + + P+ ++Q
Sbjct: 197 CTVVEMLT-EKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQ 244
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 32.3 bits (73), Expect = 0.17
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDR-EGERLPRPEACPV 148
E+ K + +D W G+T+ EM P LN M++L KI + E L +P
Sbjct: 178 ETSKDRPYDYKADVWSLGITLIEMAQI-EPPHHELNPMRVLLKIAKSEPPTLAQPSRWSS 236
Query: 149 EVYALMRQCWSKNPAER 165
E +++C KN R
Sbjct: 237 EFKDFLKKCLEKNVDAR 253
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 32.2 bits (74), Expect = 0.18
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPV- 148
E + S+ D W G ++E F G P+ G +I Q I G ++ PE V
Sbjct: 171 EVILGQGHSKTVDWWSLGCILYE-FLVGIPPFHGETPEEIFQNI-LNG-KIEWPEDVEVS 227
Query: 149 -EVYALMRQCWSKNPAERPKFSTLKD 173
E L+ + +P +R ++++
Sbjct: 228 DEAIDLISKLLVPDPEKRLGAKSIEE 253
>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and
similar domains. Bzz1 (or Bzz1p) is a
WASP/Las17-interacting protein involved in endocytosis
and trafficking to the vacuole. It physically interacts
with type I myosins and functions in the early steps of
endocytosis. Together with other proteins, it induces
membrane scission in yeast. Bzz1 contains an N-terminal
F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a
central coiled-coil, and two C-terminal SH3 domains.
This model represents the second C-terminal SH3 domain.
SH3 domains are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 51
Score = 29.4 bits (66), Expect = 0.20
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQ-NLSTFNIGMFPRN 234
+E + ++ I GD+I +I GD W G+ N G+FP +
Sbjct: 8 YEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVK---GLFPTS 50
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 32.0 bits (73), Expect = 0.23
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKI-DREGERLPRPEACPVEVYALMR 155
+ +D W G+TI+EM T G P+ ++ + + I + RL + +
Sbjct: 179 YDTKADIWSLGITIYEMAT-GNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSK-LLREFVA 236
Query: 156 QCWSKNPAER 165
C + P ER
Sbjct: 237 ACLDEEPKER 246
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 31.7 bits (72), Expect = 0.25
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQ-ILQKIDREGERLPRPEACPVEVYALMR 155
+ +D W G TI EM T G P++ L Q + K+ PE+ E +
Sbjct: 188 YGAPADIWSLGCTIVEMAT-GKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFIL 246
Query: 156 QCWSKNPAERPKFSTL 171
+C+ +P +R L
Sbjct: 247 RCFEPDPDKRASAHDL 262
>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of
Growth factor receptor-bound protein 2 (GRB2) and
related proteins. This family includes the adaptor
protein GRB2 and related proteins including Drosophila
melanogaster Downstream of receptor kinase (DRK),
Caenorhabditis elegans Sex muscle abnormal protein 5
(Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and
similar proteins. Family members contain an N-terminal
SH3 domain, a central SH2 domain, and a C-terminal SH3
domain. GRB2/Sem-5/DRK is a critical signaling molecule
that regulates the Ras pathway by linking tyrosine
kinases to the Ras guanine nucleotide releasing protein
Sos (son of sevenless), which converts Ras to the active
GTP-bound state. GRAP2 plays an important role in T cell
receptor (TCR) signaling by promoting the formation of
the SLP-76:LAT complex, which couples the TCR to the Ras
pathway. GRAP acts as a negative regulator of T cell
receptor (TCR)-induced lymphocyte proliferation by
downregulating the signaling to the Ras/ERK pathway. The
C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have
been shown to bind to classical PxxP motif ligands, as
well as to non-classical motifs. GRB2 SH3c binds Gab2
(Grb2-associated binder 2) through epitopes containing
RxxK motifs, while the SH3c of GRAP2 binds to the
phosphatase-like protein HD-PTP via a RxxxxK motif. SH3
domains are protein interaction domains that typically
bind to proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 53
Score = 29.1 bits (66), Expect = 0.26
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 194 EEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRNIMDP 238
E G+L GD I +++ DP WWKG+ +G+FP N + P
Sbjct: 12 EPGELEFRRGDIITVLDSSDP--DWWKGE--LRGRVGIFPANYVQP 53
>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9
and similar proteins. Sorting nexins (SNXs) are Phox
homology (PX) domain containing proteins that are
involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. This subfamily consists of SH3 domain
containing SNXs including SNX9, SNX18, SNX33, and
similar proteins. SNX9 is localized to plasma membrane
endocytic sites and acts primarily in clathrin-mediated
endocytosis, while SNX18 is localized to peripheral
endosomal structures, and acts in a trafficking pathway
that is clathrin-independent but relies on AP-1 and
PACS1. SH3 domains are protein interaction domains that
bind to proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 55
Score = 29.2 bits (66), Expect = 0.26
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 196 GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFP 232
G+L + AG+ + I D W +G+N S +G+FP
Sbjct: 14 GELSLRAGEVLTITRQDVGDGWLEGRN-SRGEVGLFP 49
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 31.9 bits (72), Expect = 0.30
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCP-WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFGM + D +T R P + E + + + ++ D W +GV ++EM G
Sbjct: 143 ADFGMCKEHMVDG--VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLA-GQP 199
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
P+ G + ++ Q I + P++ E ++ + +K+P++R
Sbjct: 200 PFDGEDEDELFQSIMEHN--VSYPKSLSKEAVSICKGLMTKHPSKR 243
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 31.6 bits (72), Expect = 0.30
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 83 PCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR 142
P P E K +S SD W G ++EM TF A P+ + + K+ R G+ P
Sbjct: 165 PHYMAP-EVWKGRPYSYKSDIWSLGCLLYEMATF-APPFEARSMQDLRYKVQR-GKYPPI 221
Query: 143 PEACPVEVYALMRQCWSKNPAERP 166
P ++ +R P RP
Sbjct: 222 PPIYSQDLQNFIRSMLQVKPKLRP 245
>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain
containing ring finger 1 (SH3RF1), SH3RF3, and similar
domains. SH3RF1 (or POSH) and SH3RF3 (or POSH2) are
scaffold proteins that function as E3 ubiquitin-protein
ligases. They contain an N-terminal RING finger domain
and four SH3 domains. This model represents the third
SH3 domain, located in the middle of SH3RF1 and SH3RF3,
and similar domains. SH3RF1 plays a role in calcium
homeostasis through the control of the ubiquitin domain
protein Herp. It may also have a role in regulating
death receptor mediated and JNK mediated apoptosis.
SH3RF3 interacts with p21-activated kinase 2 (PAK2) and
GTP-loaded Rac1. It may play a role in regulating JNK
mediated apoptosis in certain conditions. SH3 domains
are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 55
Score = 28.9 bits (65), Expect = 0.31
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 217 WWKGQNLSTFNIGMFPRNIMDP 238
W+KG +L T G+FP N + P
Sbjct: 34 WFKGTSLRTGQSGVFPGNYVQP 55
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 31.8 bits (73), Expect = 0.31
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 86 WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREG-ERLPRPE 144
W E +K + D W G+ EM G P++ ++ L I +G L PE
Sbjct: 182 WMAPEVIKRKDYGPKVDIWSLGIMCIEM-AEGEPPYLREPPLRALFLITTKGIPPLKNPE 240
Query: 145 ACPVEVYALMRQCWSKNPAERPKFSTL 171
E + +C K+P +RP L
Sbjct: 241 KWSPEFKDFLNKCLVKDPEKRPSAEEL 267
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 31.6 bits (72), Expect = 0.33
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVG--LNGMQILQKIDREGERLPRP-EAC 146
E + N ++ SD W G ++EM + P+ G +N + +KI++ + P P +
Sbjct: 176 ERIHENGYNFKSDIWSLGCLLYEMAALQS-PFYGDKMNLYSLCKKIEK-CDYPPLPADHY 233
Query: 147 PVEVYALMRQCWSKNPAERPKFSTL 171
E+ L+ +C + +P +RP S +
Sbjct: 234 SEELRDLVSRCINPDPEKRPDISYV 258
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 31.7 bits (72), Expect = 0.34
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVE 149
E LK +++++ D W FGV ++EM G P+ G + ++ I + PR E
Sbjct: 166 EILKGQKYNESVDWWSFGVLLYEML-IGQSPFHGEDEDELFDSILNDRPHFPR--WISKE 222
Query: 150 VYALMRQCWSKNPAER 165
+ + + ++P +R
Sbjct: 223 AKDCLSKLFERDPTKR 238
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 31.5 bits (71), Expect = 0.36
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GD G+ R+ + P P E + N ++ SD W G ++EM + P
Sbjct: 148 GDLGLGRFFSSKTTAAHSLVGTPYYMSP-ERIHENGYNFKSDIWSLGCLLYEMAALQS-P 205
Query: 121 WVG--LNGMQILQKIDREGERLPRP-EACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
+ G +N + +KI+ + + P P + E+ L+ C + +P +RP + + D R
Sbjct: 206 FYGDKMNLYSLCKKIE-QCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKR 264
Query: 178 L 178
+
Sbjct: 265 M 265
>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein
Tyrosine Kinases. The Tec (Tyrosine kinase expressed in
hepatocellular carcinoma) subfamily is composed of Tec,
Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar
proteins. They are cytoplasmic (or nonreceptor) tyr
kinases containing Src homology protein interaction
domains (SH3, SH2) N-terminal to the catalytic tyr
kinase domain. Most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases are expressed mainly by haematopoietic cells,
although Tec and Bmx are also found in endothelial
cells. B-cells express Btk and Tec, while T-cells
express Itk, Txk, and Tec. Collectively, Tec kinases are
expressed in a variety of myeloid cells such as mast
cells, platelets, macrophages, and dendritic cells. Each
Tec kinase shows a distinct cell-type pattern of
expression. The function of Tec kinases in lymphoid
cells have been studied extensively. They play important
roles in the development, differentiation, maturation,
regulation, survival, and function of B-cells and
T-cells. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 54
Score = 28.8 bits (65), Expect = 0.37
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E G L ++ G++ V+++ D HWW+ ++ N G P N
Sbjct: 12 EPGDLPLEKGEEYVVLD-DSNEHWWRARD-KNGNEGYIPSN 50
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 31.3 bits (72), Expect = 0.41
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 177 RLTPAVMKATQNCHEIDEEGKLYID--AG 203
R P V + DE+GK YID AG
Sbjct: 19 RSFPVVFDKAKGSWLYDEDGKEYIDFFAG 47
>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal
endocytic adaptor protein Sla1p. Sla1p facilitates
endocytosis by playing a role as an adaptor protein in
coupling components of the actin cytoskeleton to the
endocytic machinery. It interacts with Abp1p, Las17p and
Pan1p, which are activator proteins of actin-related
protein 2/3 (Arp2/3). Sla1p contains multiple domains
including three SH3 domains, a SAM (sterile alpha motif)
domain, and a Sla1 homology domain 1 (SHD1), which binds
to the NPFXD motif that is found in many integral
membrane proteins such as the Golgi-localized
Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and
Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin
while retaining the ability to bind proline-rich
ligands; monoubiquitination of target proteins signals
internalization and sorting through the endocytic
pathway. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 57
Score = 28.8 bits (65), Expect = 0.45
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
DE L + GD + I++ WW +N+ST G+ P + ++
Sbjct: 15 DE---LTVKEGDVVYILDDKKSKDWWMVENVSTGKEGVVPASYIEI 57
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 30.8 bits (69), Expect = 0.52
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GD G+ R+ + P P E + N ++ SD W G ++EM + P
Sbjct: 148 GDLGLGRFFSSKTTAAHSLVGTPYYMSP-ERIHENGYNFKSDIWSLGCLLYEMAALQS-P 205
Query: 121 WVG--LNGMQILQKIDREGERLPRP-EACPVEVYALMRQCWSKNPAERPKFS 169
+ G +N + QKI+ + + P P E ++ L+ C +P +RP
Sbjct: 206 FYGDKMNLFSLCQKIE-QCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIG 256
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 31.0 bits (71), Expect = 0.53
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 99 QASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKI 133
+A D W G+ I+EM G P+ N +QI +KI
Sbjct: 177 KAVDWWALGILIYEMLA-GYPPFFDDNPIQIYEKI 210
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 30.4 bits (69), Expect = 0.67
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGM--QILQKIDREGERLPRPEACPV--EVYALMRQ 156
SD W G+T++E+ T G P+ N + Q+ Q + + L E +
Sbjct: 191 SDVWSLGITLYEVAT-GKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINL 249
Query: 157 CWSKNPAERPKFSTLK 172
C K+ ++RPK+ L
Sbjct: 250 CLIKDESKRPKYKELL 265
>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and
Casein kinase Substrate in Neurons 3 (PACSIN3). PACSIN
3 or Syndapin III (Synaptic dynamin-associated protein
III) is expressed ubiquitously and regulates glucose
uptake in adipocytes through its role in GLUT1
trafficking. It also modulates the subcellular
localization and stimulus-specific function of the
cation channel TRPV4. PACSINs act as regulators of
cytoskeletal and membrane dynamics. Vetebrates harbor
three isoforms with distinct expression patterns and
specific functions. PACSINs contain an N-terminal F-BAR
domain and a C-terminal SH3 domain. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 56
Score = 28.0 bits (62), Expect = 0.69
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E +L AG++++ I + E W KG+ L + IG++P N
Sbjct: 14 EADELSFKAGEELLKIGEEDEQGWCKGR-LLSGRIGLYPAN 53
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 30.3 bits (69), Expect = 0.91
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDRE-GERLPRPEACPVEVYALMRQCWS 159
SD W G+T E+ G P ++ M+ L KI R L PE + + +C
Sbjct: 199 SDVWSLGITAIELAD-GKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLI 257
Query: 160 KNPAERP 166
KN +RP
Sbjct: 258 KNYEQRP 264
>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain
of VAV1 protein. VAV1 is expressed predominantly in the
hematopoietic system and it plays an important role in
the development and activation of B and T cells. It is
activated by tyrosine phosphorylation to function as a
guanine nucleotide exchange factor (GEF) for Rho GTPases
following cell surface receptor activation, triggering
various effects such as cytoskeletal reorganization,
transcription regulation, cell cycle progression, and
calcium mobilization. It also serves as a scaffold
protein and has been shown to interact with Ku70, Socs1,
Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76,
and Syk, among others. VAV proteins contain several
domains that enable their function: N-terminal calponin
homology (CH), acidic, RhoGEF (also called
Dbl-homologous or DH), Pleckstrin Homology (PH), C1
(zinc finger), SH2, and two SH3 domains. The C-terminal
SH3 domain of Vav1 interacts with a wide variety of
proteins including cytoskeletal regulators (zyxin),
RNA-binding proteins (Sam68), transcriptional
regulators, viral proteins, and dynamin 2. SH3 domains
are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 54
Score = 27.6 bits (61), Expect = 0.95
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 237
+ +L + GD I I+ + WW+G+ +G FP N ++
Sbjct: 12 DRSELSLKEGDIIKILNKKGQQGWWRGEIYG--RVGWFPANYVE 53
>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine
Kinase. Lyn is a member of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) PTKs.
Lyn is expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). The SH3 domain of Src kinases
contributes to substrate recruitment by binding adaptor
proteins/substrates, and regulation of kinase activity
through an intramolecular interaction. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 56
Score = 27.7 bits (61), Expect = 0.96
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 195 EGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E L G+++ +IE E WWK ++L+T G P N
Sbjct: 13 EDDLSFKKGEKLKVIEEHGE--WWKARSLTTKKEGFIPSN 50
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 30.0 bits (68), Expect = 0.97
Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 17/134 (12%)
Query: 50 ILFFSSSSSSSGDFGM--MRYSQNDCYVMTERKPL---PCPWCPMESLK-HNQFSQASDA 103
IL S DFG+ D RK PC W E ++ + + +D
Sbjct: 133 ILLGEDGSVKIADFGVSASLADGGDRTRKV-RKTFVGTPC-WMAPEVMEQVHGYDFKADI 190
Query: 104 WMFGVTIWEMFTFGAEPWVGLNGMQILQKI------DREGERLPRPEACPVEVYALMRQC 157
W FG+T E+ T GA P+ M++L E + ++ C
Sbjct: 191 WSFGITAIELAT-GAAPYSKYPPMKVLMLTLQNDPPSLETGADYKK--YSKSFRKMISLC 247
Query: 158 WSKNPAERPKFSTL 171
K+P++RP L
Sbjct: 248 LQKDPSKRPTAEEL 261
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 29.9 bits (67), Expect = 1.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR 142
E L +++ + D W FGV ++EM G P+ G + ++ Q I + PR
Sbjct: 166 EILLGQKYNTSVDWWSFGVLLYEML-IGQSPFHGHDEEELFQSIRMDNPCYPR 217
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 30.2 bits (68), Expect = 1.0
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAEPW---VGLNGMQILQKI-DREGERLPRPEACPVEVYA 152
++ SD W G++I EM G P+ N L I D + LP +
Sbjct: 184 YTVQSDVWSLGLSILEM-ALGRYPYPPETYANIFAQLSAIVDGDPPTLP-SGYSD-DAQD 240
Query: 153 LMRQCWSKNPAERPKFSTL 171
+ +C +K P RP ++ L
Sbjct: 241 FVAKCLNKIPNRRPTYAQL 259
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 30.0 bits (68), Expect = 1.2
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 20/65 (30%)
Query: 61 GDFGMMR-YSQND---CYVMTE-------RKP-LPCPWCPMESLKHNQFSQASDAWMFGV 108
GDFGM R S + Y MTE R P L + SL +++ A D W G
Sbjct: 149 GDFGMARGLSSSPTEHKYFMTEYVATRWYRAPEL------LLSL--PEYTTAIDMWSVGC 200
Query: 109 TIWEM 113
EM
Sbjct: 201 IFAEM 205
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 29.3 bits (65), Expect = 1.6
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 86 WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREG-ERLPRPE 144
W E +K + + +D W G+T E+ G P L+ M++L I + L
Sbjct: 167 WMAPEVIKQSAYDSKADIWSLGITAIEL-AKGEPPHSELHPMKVLFLIPKNNPPTLEGNY 225
Query: 145 ACPVEVYALMRQCWSKNPAERP 166
+ P++ + + C +K P+ RP
Sbjct: 226 SKPLKEF--VEACLNKEPSFRP 245
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 29.5 bits (67), Expect = 1.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 177 RLTPAVMKATQNCHEIDEEGKLYIDA 202
R T V A + + ID GK Y+DA
Sbjct: 10 RATLPVAVAGEGIYLIDATGKRYLDA 35
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 29.4 bits (66), Expect = 1.8
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVE 149
E + + + ++ D W FGV ++EM G P+ G + ++ Q I P+ + E
Sbjct: 171 EIIAYQPYGKSVDWWAFGVLLYEMLA-GQPPFDGEDEDELFQSIMEHNVSYPK--SLSKE 227
Query: 150 VYALMRQCWSKNPAER 165
++ + +K+PA+R
Sbjct: 228 AVSICKGLLTKHPAKR 243
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 29.4 bits (66), Expect = 1.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQK-IDRE--GERLPRPEACPVEVYALM 154
+A D W GV +E+ T GA P+ ++G Q Q I R + P P+ E +
Sbjct: 186 DKAVDWWSLGVLTFELLT-GASPFT-VDGEQNSQSEISRRILKSKPPFPKTMSAEARDFI 243
Query: 155 RQCWSKNPAER 165
++ K+P +R
Sbjct: 244 QKLLEKDPKKR 254
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 29.1 bits (65), Expect = 1.8
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLP 141
E L + +++A D W GV ++EM T G P+ N ++ +KI +E R P
Sbjct: 163 ELLLGHGYTKAVDWWTLGVLLYEMLT-GLPPFYDENVNEMYRKILQEPLRFP 213
>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine
Kinase. Blk is a member of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) PTKs.
It is expressed specifically in B-cells and is involved
in pre-BCR (B-cell receptor) signaling. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). The SH3 domain of Src kinases
contributes to substrate recruitment by binding adaptor
proteins/substrates, and regulation of kinase activity
through an intramolecular interaction. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 54
Score = 27.1 bits (60), Expect = 1.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 195 EGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E L + G+++ +++ D E WW ++L+T G P N
Sbjct: 13 ERDLQLKKGEKLQVLKSDGE--WWLAKSLTTGKEGYIPSN 50
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 29.1 bits (65), Expect = 1.8
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR 142
E L+ +++ + D W FGV ++EM G P+ G + ++ + I + PR
Sbjct: 166 EILQGLKYTFSVDWWSFGVLLYEML-IGQSPFHGDDEDELFESIRVDTPHYPR 217
>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine
Kinase. Src (or c-Src) is a cytoplasmic (or
non-receptor) PTK and is the vertebrate homolog of the
oncogenic protein (v-Src) from Rous sarcoma virus.
Together with other Src subfamily proteins, it is
involved in signaling pathways that regulate cytokine
and growth factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Src also
play a role in regulating cell adhesion, invasion, and
motility in cancer cells, and tumor vasculature,
contributing to cancer progression and metastasis.
Elevated levels of Src kinase activity have been
reported in a variety of human cancers. Several
inhibitors of Src have been developed as anti-cancer
drugs. Src is also implicated in acute inflammatory
responses and osteoclast function. Src kinases contain
an N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). The SH3 domain of Src kinases
contributes to substrate recruitment by binding adaptor
proteins/substrates, and regulation of kinase activity
through an intramolecular interaction. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 56
Score = 27.0 bits (59), Expect = 1.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
+E E L G+++ I+ + E WW +L+T G P N + P
Sbjct: 8 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLTTGQTGYIPSNYVAP 55
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 29.3 bits (66), Expect = 1.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR 142
E ++ ++A D W G+ I+EM G P+ N I +KI PR
Sbjct: 168 EVIQSKGHNKAVDWWALGILIYEMLV-GYPPFFDDNPFGIYEKILAGKLEFPR 219
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 29.3 bits (64), Expect = 1.9
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 24/143 (16%)
Query: 36 NNICSCQFSSSSLLILFFSSSSSSSGDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHN 95
+ F + LL S+SS Y+ E + L
Sbjct: 139 RVVKLIDFGLAKLLP---DPGSTSSIPALPSTSVGTPGYMAPEV---------LLGLSLA 186
Query: 96 QFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRP-----------E 144
S +SD W G+T++E+ T G P+ G + + LP P E
Sbjct: 187 YASSSSDIWSLGITLYELLT-GLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPE 245
Query: 145 ACPVEVYALMRQCWSKNPAERPK 167
L+++ +K+P R
Sbjct: 246 LISKAASDLLKKLLAKDPKNRLS 268
>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of
Dynamin Binding Protein, also called Tuba. DNMBP or
Tuba is a cdc42-specific guanine nucleotide exchange
factor (GEF) that contains four N-terminal SH3 domains,
a central RhoGEF [or Dbl homology (DH)] domain followed
by a Bin/Amphiphysin/Rvs (BAR) domain, and two
C-terminal SH3 domains. It provides a functional link
between dynamin and key regulatory proteins of the actin
cytoskeleton. It plays an important role in regulating
cell junction configuration. The four N-terminal SH3
domains of DNMBP binds the GTPase dynamin, which plays
an important role in the fission of endocytic vesicles.
SH3 domains are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 51
Score = 26.5 bits (59), Expect = 2.5
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 191 EIDEEGKLYIDAGDQIVIIEGDPECHWWKG--QNLSTFNIGMFPRN 234
++DEE L GD +V I G + W++G G+FP
Sbjct: 11 QLDEELDLR--EGD-VVTITGILDKGWFRGELNGRR----GIFPEG 49
>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein
Tyrosine Kinases. Fyn and Yrk (Yes-related kinase) are
members of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) PTKs. Fyn, together with
Lck, plays a critical role in T-cell signal transduction
by phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury. Src kinases contain an N-terminal
SH4 domain with a myristoylation site, followed by SH3
and SH2 domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
The SH3 domain of Src kinases contributes to substrate
recruitment by binding adaptor proteins/substrates, and
regulation of kinase activity through an intramolecular
interaction. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 56
Score = 26.6 bits (58), Expect = 2.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 190 HEIDEEGKLYIDAGDQIVII---EGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
+E E L G++ I+ EGD WW+ ++L+T G P N + P
Sbjct: 9 YEARTEDDLSFHKGEKFQILNSSEGD----WWEARSLTTGETGYIPSNYVAP 56
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 28.9 bits (64), Expect = 2.6
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 86 WCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREG-ERLPRPE 144
W E +K + + +D W G+T E+ G P L+ M++L I + L
Sbjct: 167 WMAPEVIKQSAYDFKADIWSLGITAIELAK-GEPPNSDLHPMRVLFLIPKNSPPTLEGQY 225
Query: 145 ACPVEVYALMRQCWSKNPAERP 166
+ P + + + C +K+P RP
Sbjct: 226 SKPFKEF--VEACLNKDPRFRP 245
>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E)
of Intersectin. Intersectins (ITSNs) are adaptor
proteins that function in exo- and endocytosis, actin
cytoskeletal reorganization, and signal transduction.
They are essential for initiating clathrin-coated pit
formation. They bind to many proteins through their
multidomain structure and facilitate the assembly of
multimeric complexes. Vertebrates contain two ITSN
proteins, ITSN1 and ITSN2, which exist in alternatively
spliced short and long isoforms. The short isoforms
contain two Eps15 homology domains (EH1 and EH2), a
coiled-coil region and five SH3 domains (SH3A-E), while
the long isoforms, in addition, contain RhoGEF (also
called Dbl-homologous or DH), Pleckstrin homology (PH)
and C2 domains. ITSN1 and ITSN2 are both widely
expressed, with variations depending on tissue type and
stage of development. The fifth SH3 domain (or SH3E) of
ITSN1 has been shown to bind many protein partners
including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2,
N-WASP, and synaptojanin-1, among others. SH3 domains
are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 53
Score = 26.2 bits (58), Expect = 3.3
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 204 DQIVIIEGDPECHWWKGQ-NLSTFNIGMFPRNIMDP 238
I+ + + WW+G+ N T G+FP N ++P
Sbjct: 21 GDIINVLSKDDPDWWRGELNGQT---GLFPSNYVEP 53
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 28.2 bits (63), Expect = 3.7
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRP--EACP 147
E++ + SD W G I+E FG P+ + I P E C
Sbjct: 163 ETILGVGDDKMSDWWSLGCVIFEFL-FGYPPFHAETPDAVFDNILSRRINWPEEVKEFCS 221
Query: 148 VEVYALMRQCWSKNPAER 165
E L+ + +PA+R
Sbjct: 222 PEAVDLINRLLCMDPAKR 239
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 28.5 bits (64), Expect = 3.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 178 LTPAVMKATQNCHEIDEEGKLYIDAGDQIV 207
+ P V+ + + D EG+ Y+D Q+V
Sbjct: 34 INPMVIAGAEGSYVWDYEGRRYLDFSSQLV 63
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 28.4 bits (64), Expect = 4.0
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 147 PVEVYALMRQCWSKNPAERP 166
P+EV+ +R W PAE+P
Sbjct: 604 PLEVFRAVRAVW---PAEKP 620
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 27.8 bits (62), Expect = 4.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQIL-QKIDREGERLPRPEACPVEVYALMR 155
+ + D W G+ ++E F G P+ G ++ Q I + E EA P + L+
Sbjct: 193 YGKPVDWWAMGIILYE-FLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLIS 251
Query: 156 QCWSKNPAER 165
+ +NP ER
Sbjct: 252 RLLRQNPLER 261
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 28.0 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQC 157
A D W G+ ++EM +G P+ G N + I ++ P L+R+
Sbjct: 210 GSAVDWWTLGILLYEML-YGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKL 268
Query: 158 WSKNPAER 165
K+P++R
Sbjct: 269 LVKDPSKR 276
>gnl|CDD|118162 pfam09627, PrgU, PrgU-like protein. This hypothetical protein of
125 residues is expressed in bacteria but is thought to
be plasmid in origin. It forms a six beta-strand barrel
with three accompanying alpha helices and is probably a
homo-dimer in the cell. It may be involved in
pheromone-inducible conjugation.
Length = 122
Score = 27.0 bits (59), Expect = 5.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 187 QNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 246
+N HEID ++I + + +E DPE + +NL F + MF I P++R+ +D
Sbjct: 44 ENIHEID---TIHIIKNGKSLALEVDPEKSIFGFENLGRFEVPMF--FIETPIKREAFED 98
Query: 247 I 247
I
Sbjct: 99 I 99
>gnl|CDD|233253 TIGR01057, topA_arch, DNA topoisomerase I, archaeal. This model
describes topoisomerase I from archaea. These enzymes
are involved in the control of DNA topology. DNA
topoisomerase I belongs to the type I topoisomerases,
which are ATP-independent [DNA metabolism, DNA
replication, recombination, and repair].
Length = 618
Score = 27.9 bits (62), Expect = 5.8
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 25/92 (27%)
Query: 151 YALMRQCWSKNPAERPKFSTLKDCLYRLTPA-VMKATQNCHEIDEEGKLYIDAGDQIVII 209
+ ++ A+R KFST LT + +A N EID +DAG I+
Sbjct: 112 FKALKYFCGVERAKRMKFST-------LTKQDIRRAYANPEEIDYG---MVDAGMARHIL 161
Query: 210 EGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 241
+ W+ G NLS R +M+ +R
Sbjct: 162 D------WYWGINLS--------RALMEAIRA 179
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 27.4 bits (61), Expect = 7.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 61 GDFGMMR-----YSQNDCYVMTERKPLPCPW--CPMESLKHNQFSQASDAWMFGVTIWEM 113
GDFG+ R YS L W P L N +++A D W G EM
Sbjct: 157 GDFGLARIVDPHYSHKGYLSEG----LVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEM 212
Query: 114 FTFGAEPWVGLNGMQILQKI 133
T G + G + ++ +Q I
Sbjct: 213 LT-GKPLFAGAHELEQMQLI 231
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 27.2 bits (61), Expect = 7.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGLNG--MQILQKIDREGERLPRPEACPVEVYALMR 155
+ D W G+ ++E+ T G P+ + M+I I + +L P L++
Sbjct: 170 DFSVDYWSLGILLYELLT-GRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIK 228
Query: 156 QCWSKNPAER 165
Q +NP ER
Sbjct: 229 QLLRRNPEER 238
>gnl|CDD|119426 cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K), class II,
catalytic domain; The PI3K catalytic domain family is
part of a larger superfamily that includes the
catalytic domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. PI3Ks catalyze the transfer of the
gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol
(PtdIns) or its derivatives. PI3Ks play an important
role in a variety of fundamental cellular processes,
including cell motility, the Ras pathway, vesicle
trafficking and secretion, immune cell activation and
apoptosis. They can be divided into three main classes
(I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class II
PI3Ks preferentially use PtdIns as a substrate to
produce PtdIns(3)P, but can also phosphorylate
PtdIns(4)P. They function as monomers and do not
associate with any regulatory subunits. Class II
enzymes contain an N-terminal Ras binding domain, a
lipid binding C2 domain, a PI3K homology domain of
unknown function, an ATP-binding cataytic domain, a
Phox homology (PX) domain, and a second C2 domain at
the C-terminus. They are activated by a variety of
stimuli including chemokines, cytokines,
lysophosphatidic acid (LPA), insulin, and tyrosine
kinase receptors.
Length = 353
Score = 27.4 bits (61), Expect = 7.9
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 12 QENYTEPCRKPLPPERRGYGTFSVNNICSCQFSSSSLLILFFS 54
CR PL P G ++ C + +S+ L L S
Sbjct: 42 SFLLQNKCRLPLNPALDVKGI----DVRECSYFNSNALPLKIS 80
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 27.1 bits (60), Expect = 8.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L+ N + +A D W GV ++EM G P+ + ++ + I E R PR PEA
Sbjct: 165 EVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHEKLFELILMEEIRFPRTLSPEA- 222
Query: 147 PVEVYALMRQCWSKNPAER 165
+L+ K+P +R
Sbjct: 223 ----KSLLAGLLKKDPKQR 237
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 27.3 bits (60), Expect = 8.4
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPW 121
DFG + Y + P E L + +A+D W G+ I+E+ G P+
Sbjct: 174 DFGFAKVVDTRTYTLCGTPEYIAP----EILLNVGHGKAADWWTLGIFIYEILV-GCPPF 228
Query: 122 VGLNGMQILQKI 133
+ I QKI
Sbjct: 229 YANEPLLIYQKI 240
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 27.3 bits (60), Expect = 8.9
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREG-ERLPR------ 142
E +K+ +++ + D W G ++EM G P+ Q +KI RE ERL +
Sbjct: 171 EVVKNERYTFSPDWWALGCLLYEMIA-GQSPF-----QQRKKKIKREEVERLVKEVQEEY 224
Query: 143 PEACPVEVYALMRQCWSKNPAER 165
E + +L + K+P ER
Sbjct: 225 SEKFSPDARSLCKMLLCKDPKER 247
>gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 1403
Score = 27.5 bits (61), Expect = 9.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 13 ENYTEPCRKPLPPERRGYGTFSVNNICSCQFSSSSLLILF 52
EN+ CR+P + G FS C FS S+ I+
Sbjct: 394 ENFPVYCREPRESDAFGCFIFSPERSCR-HFSKGSVYIVL 432
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 27.2 bits (61), Expect = 9.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 176 YRLTPAVMKATQNCHEIDEEGKLYIDAGDQI 206
P V+ + + D +G Y+D I
Sbjct: 35 RFRFPLVIVRAEGAYLYDVDGNEYLDFLSGI 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.446
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,654,029
Number of extensions: 1130953
Number of successful extensions: 1326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 221
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)