RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2787
(251 letters)
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 181 bits (462), Expect = 1e-56
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 2/127 (1%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFG+MR +D YVM E + +P WC ESLK FS ASD WMFGVT+WEMFT+G
Sbjct: 163 GDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQ 222
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
EPW+GLNG QIL KID+EGERLPRPE CP ++Y +M QCW+ P +RP F L+D L
Sbjct: 223 EPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 282
Query: 179 TPAVMKA 185
P M+A
Sbjct: 283 QPTDMRA 289
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 170 bits (432), Expect = 1e-51
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ + + E +P W +ES+ H ++ SD W +GVT+WE+ TFG++
Sbjct: 159 TDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK 218
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ +I +++ GERLP+P C ++VY +MR+CW + RPKF L ++
Sbjct: 219 PYDGIPASEISSILEK-GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKM 276
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 165 bits (421), Expect = 2e-50
Identities = 44/118 (37%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GDFG+ RY +++ Y LP W ES+ +F+ ASD WMF V +WE+ +FG +P
Sbjct: 155 GDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQP 214
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ L ++ +++ G+RLP+P+ CP +Y LM +CW +P++RP+F+ L L +
Sbjct: 215 FFWLENKDVIGVLEK-GDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 163 bits (415), Expect = 1e-49
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ + + + Y P W E + +FS SD W +GVT+WE ++G
Sbjct: 152 SDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQ 211
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+P+ + G +++ I++ G+R+ P CP E+YALM CW +RP F T++ +
Sbjct: 212 KPYKKMKGPEVMAFIEQ-GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270
Query: 179 TPAVMKATQNCHE 191
++ + H
Sbjct: 271 YYSLASKVEGHHH 283
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 163 bits (415), Expect = 1e-49
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ + + + Y P W E + + +FS SD W FGV +WE F++G
Sbjct: 159 SDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQ 218
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+P+ G+ G ++ +++ GER+ P CP E+Y LM CW+ + RP F+ ++ L
Sbjct: 219 KPYRGMKGSEVTAMLEK-GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277
Query: 179 TPAVMKATQNCH 190
V+ + H
Sbjct: 278 YYDVVNEGHHHH 289
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 163 bits (414), Expect = 5e-49
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ +D ++ P W +ES+ +++ SD W +GVT+WE+ TFGAE
Sbjct: 157 ADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAE 216
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ GL ++ +++ GERL +P+ C ++VY +M +CW + RP F L + R+
Sbjct: 217 PYAGLRLAEVPDLLEK-GERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRM 274
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 160 bits (408), Expect = 4e-48
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ + + E +P W +ES+ H ++ SD W +GVT+WE+ TFG++
Sbjct: 159 TDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK 218
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ +I +++ GERLP+P C ++VY +M +CW + RPKF L ++
Sbjct: 219 PYDGIPASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 276
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 158 bits (403), Expect = 7e-48
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GDFG+ RY ++ Y + LP W ES+ +F+ ASD WMFGV +WE+ G +P
Sbjct: 158 GDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP 217
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ ++ +I+ GERLP P CP +Y+LM +CW+ +P+ RP+F+ LK L +
Sbjct: 218 FQGVKNNDVIGRIEN-GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 159 bits (403), Expect = 2e-45
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ + + + Y P W E + +FS SD W +GVT+WE ++G
Sbjct: 478 SDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQ 537
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+P+ + G +++ I++ G+R+ P CP E+YALM CW +RP F T++ +
Sbjct: 538 KPYKKMKGPEVMAFIEQ-GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM 593
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 152 bits (385), Expect = 4e-45
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Query: 61 GDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTF-- 116
GDFG+ + + + + E P W ESL ++FS ASD W FGV ++E+FT+
Sbjct: 156 GDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 215
Query: 117 -------------GAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPA 163
G + + +++ + + RLPRP+ CP E+Y +M +CW+ N
Sbjct: 216 KSKSPPAEFMRMIGNDKQGQMIVFHLIELL-KNNGRLPRPDGCPDEIYMIMTECWNNNVN 274
Query: 164 ERPKFSTLKDCLYRL 178
+RP F L + ++
Sbjct: 275 QRPSFRDLALRVDQI 289
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 152 bits (387), Expect = 4e-45
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 61 GDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ + D YV+ E P W ESL N FS+ SD W FGV ++E+FT+
Sbjct: 169 ADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCD 228
Query: 119 EPWVGLNGM-------------QILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER 165
+ L ++ EG+RLP P ACP EV+ LM+ CW+ +P +R
Sbjct: 229 KSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDR 288
Query: 166 PKFSTLKDCLYRL 178
P FS L L L
Sbjct: 289 PSFSALGPQLDML 301
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 152 bits (386), Expect = 4e-45
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFG+ + ++ Y + E P W E LK +F ASD W FGVT++E+ T
Sbjct: 176 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCD 235
Query: 119 EPWV--------------GLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAE 164
+ +++ + + GERLPRP+ CP EVY LM+ CW +
Sbjct: 236 SSQSPPTKFLELIGIAQGQMTVLRLTELL-ERGERLPRPDKCPAEVYHLMKNCWETEASF 294
Query: 165 RPKFSTLKDCLYRL 178
RP F L L +
Sbjct: 295 RPTFENLIPILKTV 308
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 152 bits (387), Expect = 5e-45
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Query: 61 GDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTF-- 116
GDFG+ + + Y + E P W ESL ++FS ASD W FGV ++E+FT+
Sbjct: 187 GDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 246
Query: 117 -------------GAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPA 163
G + + +++ + + RLPRP+ CP E+Y +M +CW+ N
Sbjct: 247 KSKSPPAEFMRMIGNDKQGQMIVFHLIELL-KNNGRLPRPDGCPDEIYMIMTECWNNNVN 305
Query: 164 ERPKFSTLKDCLYRL 178
+RP F L + ++
Sbjct: 306 QRPSFRDLALRVDQI 320
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 158 bits (402), Expect = 6e-45
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GDFG+ RY ++ Y + LP W ES+ +F+ ASD WMFGV +WE+ G +P
Sbjct: 533 GDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP 592
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ ++ +I+ GERLP P CP +Y+LM +CW+ +P+ RP+F+ LK L +
Sbjct: 593 FQGVKNNDVIGRIEN-GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 152 bits (385), Expect = 1e-44
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ R D T +P W E++ FS ASD W FGV +WE+ +G
Sbjct: 193 SDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGE 252
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ + ++ ++ G RLP P CP ++ LM CW K+ A+RP+FS + L L
Sbjct: 253 RPYWNMTNRDVISSVEE-GYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311
Query: 179 --TPAVMKATQN 188
+P ++AT
Sbjct: 312 IRSPESLRATAT 323
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 146 bits (372), Expect = 2e-43
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFGM RY +D YV + P W E + ++S SD W FG+ +WE+F+ G P
Sbjct: 146 SDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMP 205
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ +++ K+ + G RL RP +Y +M CW + P +RP F L + L
Sbjct: 206 YDLYTNSEVVLKVSQ-GHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPL 262
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 146 bits (371), Expect = 3e-43
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFGM R+ +D Y + P W E +++S SD W FGV +WE+F+ G P
Sbjct: 146 SDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIP 205
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ + ++++ I G RL +P VY +M CW + P +RP FS L L +
Sbjct: 206 YENRSNSEVVEDIST-GFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 149 bits (378), Expect = 3e-43
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 61 GDFGMMRY--SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ R + T +P W E++ + +F+ ASD W +G+ +WE+ ++G
Sbjct: 189 SDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ ++ +++ +D G RLP P CP +Y LM CW K+ RPKF + L +L
Sbjct: 249 RPYWEMSNQDVIKAVDE-GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307
Query: 179 --TPAVMKATQN 188
P +K +
Sbjct: 308 IRNPGSLKIITS 319
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 146 bits (370), Expect = 7e-43
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R D Y P W ESL +N+FS SD W FGV +WE+ T+G P
Sbjct: 153 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 212
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLTP 180
+ G++ Q+ + +++ R+ RPE CP +VY LMR CW NP++RP F+ + +
Sbjct: 213 YPGIDLSQVYELLEK-DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM-- 269
Query: 181 AVMKATQNCHEIDEE 195
+ + E+++E
Sbjct: 270 --FQESSISDEVEKE 282
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 147 bits (372), Expect = 1e-42
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ R YS D Y +P W P ES+ +N+++ SD W +GV +WE+F++G
Sbjct: 216 ADFGLSRNIYS-ADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGL 274
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+P+ G+ +++ + R+G L PE CP+E+Y LMR CWSK PA+RP F ++ L R+
Sbjct: 275 QPYYGMAHEEVIYYV-RDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 333
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 145 bits (367), Expect = 1e-42
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ RY +D Y + P W P E L +++FS SD W FGV +WE+++ G P
Sbjct: 162 SDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 221
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ + + I + G RL RP +VY +M CW + ERP F L + +
Sbjct: 222 YERFTNSETAEHIAQ-GLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 278
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 149 bits (377), Expect = 2e-42
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y + P W E+ + +F+ SD W FG+ + E+ T G P
Sbjct: 322 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 381
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G+ ++L +++R G R+P P CP ++ LM QCW K P ERP F L+ L
Sbjct: 382 YPGMVNREVLDQVER-GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL 435
Score = 32.0 bits (73), Expect = 0.16
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD--- 246
+E E L G+++ I+ + E WW +LST G P N + P Q ++
Sbjct: 11 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYF 69
Query: 247 --ISR 249
I+R
Sbjct: 70 GKITR 74
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 147 bits (372), Expect = 3e-42
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 61 GDFGMMRYSQNDCYVMTE-RKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFGM R + Y + + +P W E+L + ++S SD W FG+ +WE F+ GA
Sbjct: 255 SDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGAS 314
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLT 179
P+ L+ Q + +++ G RLP PE CP V+ LM QCW+ P +RP FST+ L +
Sbjct: 315 PYPNLSNQQTREFVEK-GGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 144 bits (366), Expect = 5e-42
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R D Y LP W +ESL N ++ SD W FGVT+WE+ T G
Sbjct: 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQT 238
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL- 178
P+ G+ +I + G RL +P C EVY LM QCWS +P +RP F+ L+ L +
Sbjct: 239 PYAGIENAEIYNYL-IGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENIL 297
Query: 179 -TPAVMKATQNCHEIDEE 195
+V+ +Q+ I+ E
Sbjct: 298 GHLSVLSTSQDPLYINIE 315
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 143 bits (362), Expect = 1e-41
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
GDFGM R D Y + LP W P ES+ + +F+ SD W FGV +WE+FT+G +
Sbjct: 175 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQ 234
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
PW L+ ++++ I +G L RP CP EVY +M CW + P +R + L+ L
Sbjct: 235 PWFQLSNTEVIECI-TQGRVLERPRVCPKEVYDVMLGCWQREPQQRLNIKEIYKILHAL 292
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 142 bits (361), Expect = 1e-41
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
D G+ R Y+ D Y + LP W E++ + +FS SD W +GV +WE+F++G
Sbjct: 170 SDLGLFREVYA-ADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGL 228
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+P+ G + +++ I R + LP P+ CP VYALM +CW++ P+ RP+F + L
Sbjct: 229 QPYCGYSNQDVVEMI-RNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRL 284
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 143 bits (362), Expect = 1e-41
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFG+ + + + Y + + + P W E L ++F ASD W FGVT+ E+ T+
Sbjct: 168 GDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCD 227
Query: 119 EPWV--------------GLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAE 164
+ +++ + +EG+RLP P CP EVY LMR+CW P+
Sbjct: 228 SDSSPMALFLKMIGPTHGQMTVTRLVNTL-KEGKRLPCPPNCPDEVYQLMRKCWEFQPSN 286
Query: 165 RPKFSTLKDCLYRL 178
R F L + L
Sbjct: 287 RTSFQNLIEGFEAL 300
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 143 bits (363), Expect = 1e-41
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ + YS D Y +P W +ESL ++ SD W FGVT+WE+ T G
Sbjct: 189 ADFGLSKKIYS-GDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGM 247
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++ + G RL +PE C E+Y +M CW +P +RP FS L+ L +L
Sbjct: 248 TPYPGVQNHEMYDYL-LHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL 306
Query: 179 TPA 181
+
Sbjct: 307 LES 309
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 147 bits (372), Expect = 3e-41
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y + P W E+ + +F+ SD W FG+ + E+ T G P
Sbjct: 405 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 464
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G+ ++L +++R G R+P P CP ++ LM QCW K P ERP F L+ L
Sbjct: 465 YPGMVNREVLDQVER-GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL 518
Score = 33.7 bits (77), Expect = 0.050
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD---- 245
+E E L G+++ I+ + E WW +LST G P N + P Q +
Sbjct: 94 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYF 152
Query: 246 -DISR 249
I+R
Sbjct: 153 GKITR 157
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 141 bits (358), Expect = 4e-41
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y E P W E++ + F+ SD W FG+ + E+ T G P
Sbjct: 151 ADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 210
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ +++Q ++R G R+ RP+ CP E+Y LMR CW + P +RP F L+ L
Sbjct: 211 YPGMTNPEVIQNLER-GYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 142 bits (361), Expect = 4e-41
Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
GDFGM R D Y + R LP W P ES+ + +F+ SD W FGV +WE+FT+G +
Sbjct: 200 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQ 259
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
PW L+ + + I +G L RP ACP EVYA+MR CW + P +R + L L
Sbjct: 260 PWYQLSNTEAIDCI-TQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQAL 317
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 142 bits (360), Expect = 5e-41
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFGM R Y Y LP W P E+ F+ +D W FGV +WE+F+ G
Sbjct: 185 GDFGMARDIYR-ASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 243
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ + ++L+ + G R+ P+ CP VY +M QCW P +RP F+ + + +
Sbjct: 244 MPYPSKSNQEVLEFV-TSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302
Query: 179 T 179
T
Sbjct: 303 T 303
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 142 bits (359), Expect = 6e-41
Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFGM R Y D Y + LP W ESLK F+ SD W FGV +WE+ T
Sbjct: 180 GDFGMTRDIYE-TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 238
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+P+ GL+ Q+L+ + EG L +P+ CP ++ LMR CW NP RP F + +
Sbjct: 239 QPYQGLSNEQVLRFV-MEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297
Query: 179 TPAVMKATQNCHEIDEEGKL 198
+ + EE KL
Sbjct: 298 MEPGFREVSFYYS--EENKL 315
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 142 bits (359), Expect = 6e-41
Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 61 GDFGMMRYSQND--CYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ R ++D T +P W E++ + +F+ ASD W FG+ +WE+ T+G
Sbjct: 189 SDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGE 248
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ L+ ++++ I+ G RLP P CP +Y LM QCW + A RPKF+ + L +L
Sbjct: 249 RPYWELSNHEVMKAIND-GFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307
Query: 179 T--PAVMKATQN 188
P +K +
Sbjct: 308 IRAPDSLKTLAD 319
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 142 bits (361), Expect = 7e-41
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
GDFGM R Y Y LP W P E+ F+ +D W FGV +WE+F+ G
Sbjct: 226 GDFGMARDIYR-AGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 284
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ + ++L+ + G R+ P+ CP VY +M QCW P +RP F+ + + +
Sbjct: 285 MPYPSKSNQEVLEFV-TSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343
Query: 179 T--PAVMKATQNCH 190
T P V+
Sbjct: 344 TQDPDVINTALPIE 357
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 140 bits (356), Expect = 1e-40
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 61 GDFGMMR--YSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ R Y D YV + +P W +ESL + ++ SD W FGV +WE+ T G
Sbjct: 192 SDFGLSRDVYE-EDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG 250
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++ + + G R+ RP+ C E+Y LM QCW + P +RP F+ + L ++
Sbjct: 251 NPYPGIPPERLFNLL-KTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 142 bits (361), Expect = 4e-40
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R +++ Y E P W E++ F+ SD W FG+ + E+ T+G P
Sbjct: 326 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP 385
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G++ ++++ ++R G R+PRPE CP E+Y +M +CW P ERP F ++ L
Sbjct: 386 YPGMSNPEVIRALER-GYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 442
Score = 34.7 bits (80), Expect = 0.021
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD-----IS 248
L GDQ+V++E WWK ++L+T G P N + + + ++ IS
Sbjct: 21 HHEDLSFQKGDQMVVLEESG--EWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGIS 78
Query: 249 R 249
R
Sbjct: 79 R 79
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 138 bits (351), Expect = 5e-40
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 61 GDFGMMRYSQNDCYVMTERKP---LPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFG 117
DFG+ R + Y K LP W +ESL+ +F+ SD W FGV +WE+ T G
Sbjct: 170 ADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRG 229
Query: 118 AEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
A P+ +N I + +G RL +PE CP +Y +M +CW RP FS L +
Sbjct: 230 APPYPDVNTFDITVYL-LQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISA 288
Query: 178 L 178
+
Sbjct: 289 I 289
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 139 bits (353), Expect = 5e-40
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R + D Y T LP W E+L ++ SD W FGV +WE+FT G
Sbjct: 199 ADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGS 258
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLT 179
P+ G+ ++ + + +EG R+ +P C E+Y +MR CW P++RP F L + L R+
Sbjct: 259 PYPGIPVEELFKLL-KEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI- 316
Query: 180 PAVMKATQNCHEIDEE 195
+ T N +D
Sbjct: 317 ---LTLTTNEEYLDLS 329
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 137 bits (347), Expect = 1e-39
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ + + + LP W E+L+ +FS SD W FG+ +WE+++FG P
Sbjct: 159 SDFGLTK----EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 214
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ + ++ ++++ G ++ P+ CP VY +M+ CW + A RP F L++ L +
Sbjct: 215 YPRIPLKDVVPRVEK-GYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 271
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 142 bits (359), Expect = 1e-39
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R D Y P W ESL +N+FS SD W FGV +WE+ T+G P
Sbjct: 360 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 419
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLTP 180
+ G++ Q+ + +++ R+ RPE CP +VY LMR CW NP++RP F+ + +
Sbjct: 420 YPGIDLSQVYELLEK-DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM-- 476
Query: 181 AVMKATQNCHEIDEE 195
+ + E+++E
Sbjct: 477 --FQESSISDEVEKE 489
Score = 27.0 bits (60), Expect = 6.6
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ L I G+++ ++ + W + Q + G P N
Sbjct: 52 FVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKN--GQGWVPSN 94
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 139 bits (352), Expect = 2e-39
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R + D Y T LP W E+L ++ SD W FGV +WE+FT G
Sbjct: 245 ADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGS 304
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++ + + +EG R+ +P C E+Y +MR CW P++RP F L + L R+
Sbjct: 305 PYPGIPVEELFKLL-KEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 362
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 139 bits (352), Expect = 2e-39
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 61 GDFGMMRYSQNDCYVMTERKP---LPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFG 117
DFG+ R + + K LP W +ESL+ +F+ SD W FGV +WE+ T G
Sbjct: 234 ADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRG 293
Query: 118 AEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
A P+ +N I + +G RL +PE CP +Y +M +CW RP FS L +
Sbjct: 294 APPYPDVNTFDITVYL-LQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISA 352
Query: 178 L 178
+
Sbjct: 353 I 353
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS
autophosphorylation conformation, recept tyrosine
kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo
sapiens}
Length = 298
Score = 137 bits (347), Expect = 2e-39
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 61 GDFGMMRYSQNDCYVMTERKP---LPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFG 117
DFG+ R + Y ++ LP W +ESL+ +F+ SD W FGV +WE+ T G
Sbjct: 166 ADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRG 225
Query: 118 AEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR 177
A P+ ++ + + +G RLP+PE CP +Y +M+QCW +PA RP F L + +
Sbjct: 226 APPYRHIDPFDLTHFL-AQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQ 284
Query: 178 LTPAVMKATQNCHEID 193
+ + A H +
Sbjct: 285 I----VSALLGDHYVQ 296
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A
{Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A*
2p4i_A* 3l8p_A* 2wqb_A*
Length = 327
Score = 136 bits (344), Expect = 1e-38
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R + YV LP W +ESL ++ ++ SD W +GV +WE+ + G P
Sbjct: 184 ADFGLSRG--QEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP 241
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ G+ ++ +K+ +G RL +P C EVY LMRQCW + P ERP F+ + L R+
Sbjct: 242 YCGMTCAELYEKL-PQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 135 bits (341), Expect = 1e-38
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHN-QFSQASDAWMFGVTIWEMFTFGAE 119
D G+ ++ +P W P E +++ + A+D W FG T+WE+ + G +
Sbjct: 163 SDPGISITVLPKDI---LQERIP--WVPPECIENPKNLNLATDKWSFGTTLWEICSGGDK 217
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P L+ + LQ + +LP P+A + L+ C P RP F + L L
Sbjct: 218 PLSALDSQRKLQFYED-RHQLPAPKAAE--LANLINNCMDYEPDHRPSFRAIIRDLNSL 273
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 136 bits (345), Expect = 2e-38
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R D Y T LP W E+L ++ SD W FGV +WE+FT G
Sbjct: 233 ADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS 292
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ ++ + + +EG R+ +P C E+Y +MR CW P++RP F L + L R+
Sbjct: 293 PYPGVPVEELFKLL-KEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 137 bits (347), Expect = 4e-38
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ + + + LP W E+L+ +FS SD W FG+ +WE+++FG P
Sbjct: 331 SDFGLTK----EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 386
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ + ++ ++++ G ++ P+ CP VY +M+ CW + A RP F L++ L
Sbjct: 387 YPRIPLKDVVPRVEK-GYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQL 440
Score = 30.8 bits (70), Expect = 0.44
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E L GD + I+ + +W+K +N G+ P N
Sbjct: 24 AEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPAN 63
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 134 bits (339), Expect = 5e-38
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R ++ YV LP W E++ ++ SD W FGV +WE+F+ GA
Sbjct: 190 CDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 249
Query: 120 PWVGL-NGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ + +++ +EG R+ P+ E+Y M CW P++RP FS L + L L
Sbjct: 250 PYPGVKIDEEFCRRL-KEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 308
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene
homolog; kinase, structure, inhibitor, STI-571, gleevec,
transferase activator; HET: STI; 1.60A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 131 bits (333), Expect = 3e-37
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R + YV+ LP W ES+ + ++ SD W +G+ +WE+F+ G+
Sbjct: 187 CDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS 246
Query: 120 PWVGL-NGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ + + I +EG R+ PE P E+Y +M+ CW +P +RP F + + +
Sbjct: 247 PYPGMPVDSKFYKMI-KEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 132 bits (334), Expect = 4e-37
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R + YV+ LP W ESL ++ SD W +G+ +WE+F+ G
Sbjct: 214 CDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVN 273
Query: 120 PWVGL-NGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G+ + I + G ++ +P E+Y +M+ CW+ + +RP F L L
Sbjct: 274 PYPGIPVDANFYKLI-QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ 332
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 128 bits (325), Expect = 9e-36
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
GDFG+ R + Y++ LP W ES+ ++ SD W +G+ +WE+F+ G
Sbjct: 206 GDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN 265
Query: 120 PWVG-LNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
P+ G L + + + ++G ++ +P P +Y++M+ CW+ P RP F + L
Sbjct: 266 PYPGILVNSKFYKLV-KDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 126 bits (317), Expect = 2e-34
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 61 GDFGMMRY-SQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAE 119
DFG+ R ++ YV LP W E++ ++ SD W FGV +WE+F+ GA
Sbjct: 235 CDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 294
Query: 120 PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLT 179
P+ G+ + + +EG R+ P+ E+Y M CW P++RP FS L + L L
Sbjct: 295 PYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 115 bits (289), Expect = 3e-31
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R + M+ W E ++ + FS+ SD W +GV +WE+ T G P
Sbjct: 158 TDFGLARE-WHRTTKMSAAGAYA--WMAPEVIRASMFSKGSDVWSYGVLLWELLT-GEVP 213
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ G++G+ + + LP P CP LM CW+ +P RP F+ + D L
Sbjct: 214 FRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQL 268
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 107 bits (270), Expect = 5e-28
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG+ R + P W E L+ ++ SD + FGV +WE+ T +P
Sbjct: 181 CDFGLSRLKASTFLSSKSAAGTPE-WMAPEVLRDEPSNEKSDVYSFGVILWELAT-LQQP 238
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLTP 180
W LN Q++ + + +RL P +V A++ CW+ P +RP F+T+ D L L
Sbjct: 239 WGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK 298
Query: 181 AVM 183
+ +
Sbjct: 299 SAV 301
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 99.2 bits (248), Expect = 4e-25
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKH---NQFSQASDAWMFGVTIWEMFTFG 117
+ Q+ + W E+L+ + +++D W F V +WE+ T
Sbjct: 155 SMADVKFSFQSPGRMYAPA------WVAPEALQKKPEDTNRRSADMWSFAVLLWELVT-R 207
Query: 118 AEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ L+ M+I K+ EG R P V LM+ C +++PA+RPKF + L
Sbjct: 208 EVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPIL 265
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 98.9 bits (247), Expect = 9e-25
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCP-------------WCPMESLKHNQFSQASDAWMFG 107
DFG+ R ++ + L P W E + + + D + FG
Sbjct: 150 ADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFG 209
Query: 108 VTIWEMFTFGAEPWVGLNGMQILQKID-REGERLPRPEACPVEVYALMRQCWSKNPAERP 166
+ + E+ + ++ R P CP + + +C +P +RP
Sbjct: 210 IVLCEIIGRV-NADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRP 268
Query: 167 KFSTLKDCL 175
F L+ L
Sbjct: 269 SFVKLEHWL 277
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 94.7 bits (236), Expect = 3e-23
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCP-WCPMESLK---HNQFSQASDAWMFGVTIWEMFTF 116
GDFG+ +P W E ++ +N FS SD + +G+ ++E+ T
Sbjct: 174 GDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT- 232
Query: 117 GAEPWVGLNGM-QILQKIDREGERLPRPEA---CPVEVYALMRQCWSKNPAERPKFSTLK 172
G P+ +N QI+ + R + CP + L+ C K ERP F +
Sbjct: 233 GELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQIL 292
Query: 173 DCLYRLTPAVMK 184
+ L ++ K
Sbjct: 293 SSIELLQHSLPK 304
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 94.3 bits (235), Expect = 4e-23
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
DFG Q MT K W E + + +S+ D + +G+ +WE+ T +P
Sbjct: 148 CDFGTACDIQTH---MTNNKGSAA-WMAPEVFEGSNYSEKCDVFSWGIILWEVIT-RRKP 202
Query: 121 WVGLNG--MQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ + G +I+ + G R P + P + +LM +CWSK+P++RP + + L
Sbjct: 203 FDEIGGPAFRIMWAV-HNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 92.4 bits (230), Expect = 2e-22
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPM--ESLKH---NQFSQASDAWMFGVTIWEMFT 115
GDFG+ + + L M E ++ N +S SD + FG+ ++E+ T
Sbjct: 162 GDFGLATEKSR-WSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 220
Query: 116 FGAEPWVGLNGM-QILQKIDREGER---LPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
G P+ +N QI++ + R CP + LM +C K ERP F +
Sbjct: 221 -GQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI 279
Query: 172 KDCLYRL 178
+ L
Sbjct: 280 LAEIEEL 286
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 91.2 bits (227), Expect = 4e-22
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESL--KHNQFSQASDAWMFGVTIWEMFTFGA 118
DFG+ SQ + ++ W E++ + +++ +D + F + ++ + T G
Sbjct: 171 ADFGL---SQQSVHSVSGLLGNFQ-WMAPETIGAEEESYTEKADTYSFAMILYTILT-GE 225
Query: 119 EPWVGLNG--MQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
P+ + ++ + I EG R PE CP + ++ CWS +P +RP FS + L
Sbjct: 226 GPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKEL 284
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 89.3 bits (222), Expect = 4e-21
Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 18/133 (13%)
Query: 61 GDFGMMR-----YSQNDCYVMTERKPLPCPW---------CPMESLKHNQFSQASDAWMF 106
DFG+ + + + C P FS+ SD +
Sbjct: 171 TDFGLFSISGVLQAGRREDKLRIQNGWLC-HLAPEIIRQLSPDTEEDKLPFSKHSDVFAL 229
Query: 107 GVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEA-CPVEVYALMRQCWSKNPAER 165
G +E+ P+ I+ ++ G + + E+ ++ CW+ ER
Sbjct: 230 GTIWYELHA-REWPFKTQPAEAIIWQMGT-GMKPNLSQIGMGKEISDILLFCWAFEQEER 287
Query: 166 PKFSTLKDCLYRL 178
P F+ L D L +L
Sbjct: 288 PTFTKLMDMLEKL 300
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 60.1 bits (146), Expect = 7e-11
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 30/147 (20%)
Query: 61 GDFGMMR----YSQNDCYVMTERKPLPCPWCPMESL------KHNQFSQASDAWMFGVTI 110
D G+ + R + P E L H Q +D + FG+ +
Sbjct: 184 ADLGLAVKFISDTNEVDIPPNTRVGTK-RYMPPEVLDESLNRNHFQSYIMADMYSFGLIL 242
Query: 111 WEMFT---------FGAEPWVGLNGMQ-----ILQKIDREGERLPRPEA-----CPVEVY 151
WE+ P+ L + + + + R P C ++
Sbjct: 243 WEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMG 302
Query: 152 ALMRQCWSKNPAERPKFSTLKDCLYRL 178
LM +CW+ NPA R +K L ++
Sbjct: 303 KLMTECWAHNPASRLTALRVKKTLAKM 329
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 59.0 bits (143), Expect = 2e-10
Identities = 23/139 (16%), Positives = 36/139 (25%), Gaps = 14/139 (10%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPCPWCPM----ESLKHNQFSQASDAWMFGVTIWEMFTFG 117
DFG Q D + P E + D W + M G
Sbjct: 194 DFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLN-G 252
Query: 118 AEPWVGLNGMQILQKIDREG-ERLPRPEACPVEVYALMRQCWSKNPAERP--------KF 168
PW + KI E P +C +++ K P R
Sbjct: 253 CHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVG 312
Query: 169 STLKDCLYRLTPAVMKATQ 187
L++ +P + +
Sbjct: 313 KALQEVGGLKSPWKGEYKE 331
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 54.6 bits (131), Expect = 2e-10
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
G L ++ GD + + + + E +WW+G+N +T +G FP N + P
Sbjct: 31 FGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 57.9 bits (140), Expect = 4e-10
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 92 LKHNQFSQASDAWMFGVTIWEMFTFGAE---------PWVGLNGM-----QILQKIDREG 137
+KH + + +D + G+ WE+ + P+ L ++ + + +
Sbjct: 229 MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK 288
Query: 138 ERLPRPEA-----CPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
R P + +MR+CW N A R +K L +L
Sbjct: 289 LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 334
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 53.4 bits (128), Expect = 4e-10
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 183 MKATQNCH-----EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 237
M+ Q + L ++ GD + + + + E +WW+G+N +T +G FP N +
Sbjct: 7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
Query: 238 P 238
P
Sbjct: 67 P 67
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 57.7 bits (140), Expect = 4e-10
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 92 LKHNQFSQASDAWMFGVTIWEMFT---------FGAEPWVGLNG-----MQILQKIDREG 137
+ + D W FG+ +WE+ P+ + + + + +
Sbjct: 195 VDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQ 254
Query: 138 ERLPRPEA-----CPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+R P + LM++CW +NP+ R +K L ++
Sbjct: 255 QRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 57.0 bits (138), Expect = 8e-10
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 19/106 (17%)
Query: 92 LKHNQFSQASDAWMFGVTIWEMFT--------------FGAEPWVGLNGMQILQKIDREG 137
+KH + + +D + G+ WE+ + + ++ + + +
Sbjct: 190 MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK 249
Query: 138 ERLPRPEA-----CPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
R P + +MR+CW N A R +K L +L
Sbjct: 250 LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 56.1 bits (136), Expect = 1e-09
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GDFG+ R +D P P E + +++ SD W G ++E+ P
Sbjct: 158 GDFGLARILNHDTSFAKTFVGTPYYMSP-EQMNRMSYNEKSDIWSLGCLLYELCA-LMPP 215
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLTP 180
+ + ++ KI REG+ P E+ ++ + + RP ++++ L P
Sbjct: 216 FTAFSQKELAGKI-REGKFRRIPYRYSDELNEIITRMLNLKDYHRP---SVEEILEN--P 269
Query: 181 AVMKATQNCH 190
+++ + H
Sbjct: 270 LILEHHHHHH 279
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 55.1 bits (132), Expect = 5e-09
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 21/136 (15%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPW-----CPMESLKHNQFSQASDAWMFGVTIWEMFT 115
F + R P P + A D W G+ I+ ++
Sbjct: 253 TGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWC 312
Query: 116 FGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAER---------P 166
P + + I R + +P+P V AL+ +R P
Sbjct: 313 -ADLPNTDDAALGGSEWIFRSCKNIPQP------VRALLEGFLRYPKEDRLLPLQAMETP 365
Query: 167 KFSTLKDCLYRLTPAV 182
++ L+ L P
Sbjct: 366 EYEQLRTELSAALPLY 381
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 54.3 bits (131), Expect = 7e-09
Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 9/143 (6%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GDFG+ R + + P P E ++ ++ SD W G ++E+ T
Sbjct: 167 GDFGIARVLNSTVELARACIGTPYYLSP-EICENKPYNNKSDIWALGCVLYELCT-LKHA 224
Query: 121 WVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP------KFSTLKDC 174
+ + ++ KI G P ++ +L+ Q + +NP +RP + +
Sbjct: 225 FEAGSMKNLVLKI-ISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283
Query: 175 LYRLTPAVMKATQNCHEIDEEGK 197
+ + + A + C + +
Sbjct: 284 IEKFLSPQLIAEEFCLKTFSKFG 306
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 54.1 bits (130), Expect = 8e-09
Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 37/164 (22%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPC-------PWCPMESLK-------HNQFSQASDAWMF 106
DFG+ + V + + E L+ + D +
Sbjct: 162 SDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYAL 221
Query: 107 GVTIWEMFT--FGAEPWVGLNGMQI---------------LQKIDREGERLPRPEACPVE 149
G+ WE+F P + Q+ + RE +R PEA
Sbjct: 222 GLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKEN 281
Query: 150 VYA------LMRQCWSKNPAERPKFSTLKDCLYRLTPAVMKATQ 187
A + CW ++ R ++ + L +
Sbjct: 282 SLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKS 325
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 48.4 bits (116), Expect = 3e-08
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 246
+ +L I +GD++ I++ WW Q + + G+ P ++P+R K+ +
Sbjct: 19 SQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHTE 71
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 51.1 bits (123), Expect = 7e-08
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGL-NGMQILQKIDREGERLPRPEACPVEVYALMRQ 156
+A+D W G TI EM T G P+ L + K+ PE+ E A + +
Sbjct: 203 GKAADIWSLGCTIIEMAT-GKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILK 261
Query: 157 CWSKNPAERP 166
C+ +P +R
Sbjct: 262 CFEPDPDKRA 271
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 51.2 bits (123), Expect = 7e-08
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 95 NQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR-PEACPVEVYAL 153
++ ++ D + FG+ + EM T P+ + + G + + EV +
Sbjct: 204 EKYDESVDVYAFGMCMLEMAT-SEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEI 262
Query: 154 MRQCWSKNPAERPKFSTL 171
+ C +N ER L
Sbjct: 263 IEGCIRQNKDERYSIKDL 280
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 51.4 bits (123), Expect = 8e-08
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 85 PWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGL-NGMQILQKIDREGERLPRP 143
++ S SD W G ++ M G P+ + N + L I + P
Sbjct: 232 SSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQQIINQISKLHAIIDPNHEIEFP 290
Query: 144 EACPVEVYALMRQCWSKNPAERPKFSTL 171
+ ++ +++ C ++P +R L
Sbjct: 291 DIPEKDLQDVLKCCLKRDPKQRISIPEL 318
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 50.1 bits (120), Expect = 2e-07
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 20/105 (19%)
Query: 94 HNQFSQASDAWMFGVTIWEMFT---------------FGAEPWVGLNGMQILQKIDREGE 138
D + G+ +WE+ + F E + + + + + +
Sbjct: 212 QRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKK 271
Query: 139 RLPRPEACPVE-----VYALMRQCWSKNPAERPKFSTLKDCLYRL 178
R + + + +CW + R + + + ++
Sbjct: 272 RPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 50.1 bits (120), Expect = 2e-07
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 85 PWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGL-NGMQILQKIDREGERLPRP 143
++ S SD W G ++ M G P+ + N + L I + P
Sbjct: 185 SSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQQIINQISKLHAIIDPNHEIEFP 243
Query: 144 EACPVEVYALMRQCWSKNPAERPKFSTLKDCL 175
+ ++ +++ C ++P +R ++ + L
Sbjct: 244 DIPEKDLQDVLKCCLKRDPKQRI---SIPELL 272
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 49.2 bits (118), Expect = 3e-07
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 85 PWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGL-NGMQILQKIDREGERLPRP 143
++ S SD W G ++ M G P+ + N + L I + P
Sbjct: 204 SSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQQIINQISKLHAIIDPNHEIEFP 262
Query: 144 EACPVEVYALMRQCWSKNPAERPKFSTLKDCLYR--LTPAVMKATQNCHEIDEE 195
+ ++ +++ C ++P +R ++ + L + Q EE
Sbjct: 263 DIPEKDLQDVLKCCLKRDPKQRI---SIPELLAHPYVQIQTHPVNQMAKGTTEE 313
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 45.8 bits (109), Expect = 3e-07
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
L G++ I+E WW+ ++L+T G P N
Sbjct: 19 RWTDLSFHKGEKFQILE-FGPGDWWEARSLTTGETGYIPSN 58
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 45.4 bits (108), Expect = 4e-07
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+G L + G+Q+ I+E E WWK Q+L+T G P N
Sbjct: 19 HDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFN 57
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 48.8 bits (117), Expect = 4e-07
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GD G+ R+ + P P E + N ++ SD W G ++EM P
Sbjct: 178 GDLGLGRFFSSKTTAAHSLVGTPYYMSP-ERIHENGYNFKSDIWSLGCLLYEMAA-LQSP 235
Query: 121 WVG--LNGMQILQKIDREGERLPRPEAC-PVEVYALMRQCWSKNPAERP 166
+ G +N + +KI + + P P E+ L+ C + +P +RP
Sbjct: 236 FYGDKMNLYSLCKKI-EQCDYPPLPSDHYSEELRQLVNMCINPDPEKRP 283
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 45.0 bits (107), Expect = 5e-07
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
L G+++ ++E E WWK ++L T G P N
Sbjct: 20 HPDDLSFKKGEKMKVLEEHGE--WWKAKSLLTKKEGFIPSN 58
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 45.0 bits (107), Expect = 5e-07
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 183 MKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+KA + D L GD I ++ + W G++ T G FP +
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 45.1 bits (107), Expect = 6e-07
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ G+L GD + I+E W++ ++ ++ G+
Sbjct: 29 PKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAG 70
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 45.0 bits (107), Expect = 6e-07
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 246
E L G++ I+ E WW+ ++L+T G P + P+ R D
Sbjct: 18 TEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYKD 69
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 44.5 bits (106), Expect = 7e-07
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 239
+ +L I +GD++ I++ WW Q + + G+ P ++P+
Sbjct: 15 SQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 44.2 bits (105), Expect = 1e-06
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 193 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 244
E +L + G+ + +IE + + WWK +N +G+ P+N + +
Sbjct: 18 VTEEELNFEKGETMEVIEKPENDPEWWKCKNARG-QVGLVPKNYVVVLSDGPA 69
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 44.2 bits (105), Expect = 1e-06
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E L G++ I+ E WW+ ++L+T G P N
Sbjct: 28 TEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSN 67
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 43.8 bits (104), Expect = 2e-06
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 246
E L ++ G + +I+E + HWW+ ++ + G P N + + D
Sbjct: 15 EAHDLRLERGQEYIILE-KNDLHWWRARDKYG-SEGYIPSNYVTGKKSNNLDQ 65
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 44.0 bits (104), Expect = 2e-06
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
L GDQ+V++E E WWK ++L+T G P N
Sbjct: 38 HHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSN 76
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 47.3 bits (112), Expect = 2e-06
Identities = 15/112 (13%), Positives = 28/112 (25%), Gaps = 13/112 (11%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLP------CPWCPMESLKHNQFSQASDAWMFGVTIWEMF 114
F + R P + + + DAW G+ I+ ++
Sbjct: 248 TGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIW 307
Query: 115 TFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
P + + I + P V AL+ +R
Sbjct: 308 C-ADLPITKDAALGGSEWI------FRSCKNIPQPVRALLEGFLRYPKEDRL 352
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 43.4 bits (103), Expect = 2e-06
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 180 PAVMKATQNC-HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
P+ + E L GD + I+ + +W+K +N G+ P N
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPAN 63
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 43.5 bits (103), Expect = 2e-06
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 183 MKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+K + + L GD + ++ + + W G++ +T G FP +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSS 61
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 43.1 bits (102), Expect = 3e-06
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 177 RLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ +K + L GD I ++ + + W G++ + G FP +
Sbjct: 3 HMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSS 60
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 42.5 bits (101), Expect = 3e-06
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++E L GD + I + PE WW ++ GM P
Sbjct: 13 NDEEDLPFKKGDILRIRD-KPEEQWWNAEDSEG-KRGMIPVP 52
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 46.2 bits (110), Expect = 3e-06
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 19/119 (15%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPW------------CPMESLKHNQFSQASDAWMFGV 108
GDFG++ D T P+P P E + N +S D + G+
Sbjct: 160 GDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSP-EQIHGNSYSHKVDIFSLGL 218
Query: 109 TIWEMFT-FGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
++E+ F + ++ L + R + P Y +++ S +P ERP
Sbjct: 219 ILFELLYPFSTQM----ERVRTLTDV-RNLKFPPLFTQKYPCEYVMVQDMLSPSPMERP 272
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 42.6 bits (101), Expect = 3e-06
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++E L GD + I + E WW ++ GM P
Sbjct: 15 NDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEG-KRGMIPVP 54
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 46.2 bits (110), Expect = 3e-06
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPC--P-WCPMESLKHNQFSQASDAWMFGVTIWEMFTFG 117
GDFG++ + P + E L+ + A+D + G+TI E+
Sbjct: 199 GDFGLLVELGTAGAGEVQ-----EGDPRYMAPELLQ-GSYGTAADVFSLGLTILEVAC-N 251
Query: 118 AEPWVGLNGMQILQKIDREGERLPR-PEACPVEVYALMRQCWSKNPAERP 166
E G G Q L R+G P E+ +++ +P R
Sbjct: 252 MELPHGGEGWQQL----RQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRA 297
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 46.2 bits (110), Expect = 4e-06
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 23/113 (20%)
Query: 61 GDFGMMRYSQN------DCYVMTERKPLPCPWCPMESLKHNQ-FSQASDAWMFGVTIWEM 113
GD G + + D + E L+ N +D + +T+
Sbjct: 176 GDLGHVTRISSPQVEEGDSR-----------FLANEVLQENYTHLPKADIFALALTVVCA 224
Query: 114 FTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
+ + R+G P+ E L++ +P RP
Sbjct: 225 AG-AEPLPRNGDQWHEI----RQGRLPRIPQVLSQEFTELLKVMIHPDPERRP 272
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 43.2 bits (102), Expect = 4e-06
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
L GDQ+V++E E WWK ++L+T G P N
Sbjct: 16 SPDDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSN 54
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 42.2 bits (100), Expect = 5e-06
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++ ++ I GD+I ++ D W K N +T G+ P
Sbjct: 13 KDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTT 54
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 42.8 bits (101), Expect = 5e-06
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 193 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 244
E +L + G+ + +IE + + WWK +N +G+ P+N + +
Sbjct: 29 VTEEELNFEKGETMEVIEKPENDPEWWKCKNARG-QVGLVPKNYVVVLSDGPA 80
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 41.8 bits (99), Expect = 6e-06
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E+ +L D+I+ IE + WW G+ + G+FP N
Sbjct: 12 AEDNELTFVENDKIINIEFVDD-DWWLGELEKDGSKGLFPSN 52
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 45.3 bits (107), Expect = 9e-06
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPW------------CPMESLKHNQFSQASDAWMFGV 108
GDFG++ D T P+P P E + N +S D + G+
Sbjct: 206 GDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSP-EQIHGNNYSHKVDIFSLGL 264
Query: 109 TIWEMFT-FGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERP 166
++E+ F + ++I+ + R + + + +++ S +P ERP
Sbjct: 265 ILFELLYSFST----QMERVRIITDV-RNLKFPLLFTQKYPQEHMMVQDMLSPSPTERP 318
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 41.5 bits (98), Expect = 9e-06
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
L + GD+ I+E + WW+ ++ G P N
Sbjct: 21 NANDLQLRKGDEYFILE-ESNLPWWRARD-KNGQEGYIPSN 59
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 41.5 bits (98), Expect = 9e-06
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ G L G+ +++IE P+ WW ++ N G+ PR
Sbjct: 23 QVGDLTFKKGEILLVIEKKPD-GWWIAKDAKG-NEGLVPRT 61
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 44.7 bits (105), Expect = 1e-05
Identities = 14/122 (11%), Positives = 34/122 (27%), Gaps = 13/122 (10%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGAEP 120
GD + + + F+ A +AW G++I+ ++ P
Sbjct: 236 GDVSALWKVGTRGPASSVPVTYAPR--EFLNASTATFTHALNAWQLGLSIYRVWC-LFLP 292
Query: 121 WVGLNG-------MQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKD 173
+ + L+ + P V L+ + + + R +
Sbjct: 293 FGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRL---LPLE 349
Query: 174 CL 175
+
Sbjct: 350 AM 351
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 41.3 bits (97), Expect = 2e-05
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 243
+ G+++ +I + WWK +LST P + +
Sbjct: 30 DISPPIFRRGEKLRVISDEGG--WWKAISLSTGRESYIPGICVARVSGPS 77
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 40.7 bits (96), Expect = 2e-05
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDIS 248
DE L ++ D +++ + +W++ N+ T G+FP + + +P+ ++
Sbjct: 21 DE---LELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAYYAIEVTK-EPEHMA 71
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 41.2 bits (97), Expect = 2e-05
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 193 DEEGKLYIDAGDQIVIIE----GDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 243
+ E ++ + GD + I+ + WWK + + NIG P N ++ ++R++
Sbjct: 27 NPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG-NIGYIPYNYIEIIKRRK 80
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPMRR 241
EE +L +G+ + +++ WW G + +G+FP N + PM R
Sbjct: 13 LEEDELGFRSGEVVEVLDSSNP-SWWTG----RLHNKLGLFPANYVAPMMR 58
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 40.5 bits (95), Expect = 3e-05
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
D E +L G+ I +I E +W++G+ T G+FP +
Sbjct: 29 DLEVELSFRKGEHICLIRKVNE-NWYEGRITGTGRQGIFPAS 69
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 40.0 bits (94), Expect = 4e-05
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ +L + ++ +++ E HWW+ Q+ + G P +
Sbjct: 33 DPQELALRCDEEYYLLD-SSEIHWWRVQD-KNGHEGYAPSS 71
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 43.2 bits (102), Expect = 4e-05
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 16/138 (11%)
Query: 50 ILFFSSSSSSSG-----DFGMMRYSQNDCYVMTERKPL---PCPWCPMESLK---HNQFS 98
IL ++ DFG+ + + + R + W E L +
Sbjct: 149 ILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEG-WIAPEMLSEDCKENPT 207
Query: 99 QASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDR-EGERLPRPEACPVEVYALMRQC 157
D + G + + + G+ P+ Q + + L + V L+ +
Sbjct: 208 YTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKM 267
Query: 158 WSKNPAERPKFSTLKDCL 175
+ +P +RP + K L
Sbjct: 268 IAMDPQKRP---SAKHVL 282
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 39.5 bits (93), Expect = 5e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+E ++ GD IV ++ + W G T GM P N
Sbjct: 18 QDEDEVSFRDGDYIVNVQPIDDG-WMYGTVQRTGRTGMLPAN 58
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 39.6 bits (93), Expect = 5e-05
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 244
+ +L I+ + + +IE W K +N +G P + P
Sbjct: 26 QPDELTIEEHEVLEVIEDGDMEDWVKARNKVG-QVGYVPEKYLQFPTSSGP 75
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 39.6 bits (93), Expect = 5e-05
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
EG + + G+ + ++E D W + + G P +
Sbjct: 20 SEGTISMAEGEDLSLMEEDKGDGWTRVRR-KEGGEGYVPTS 59
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
D + ++ G++I ++ E +W++G+ T G+FP
Sbjct: 19 DTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPIT 59
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 42.3 bits (100), Expect = 6e-05
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 61 GDFGMMRYSQNDCYVMTERKPLPC--PW--CPMESLKHNQFSQASDAWMFGVTIWEMFTF 116
GDFG++ +ND P E + + + D + G+ + E+
Sbjct: 164 GDFGLVTSLKNDGKRTRS-----KGTLRYMSP-EQISSQDYGKEVDLYALGLILAELLHV 217
Query: 117 GAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL 171
+ + R+G + + L+++ SK P +RP S +
Sbjct: 218 CDTA---FETSKFFTDL-RDG---IISDIFDKKEKTLLQKLLSKKPEDRPNTSEI 265
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 40.1 bits (94), Expect = 6e-05
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD-----IS 248
L G++ II + E WW+ ++++T G P N + P Q ++ +
Sbjct: 40 TTEDLSFKKGERFQIIN-NTEGDWWEARSIATGKSGYIPSNYVVPADSIQAEEWYFGKMG 98
Query: 249 R 249
R
Sbjct: 99 R 99
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
DE L ++ D +++ + +W++ N+ T G+FP
Sbjct: 18 DE---LELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAY 55
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 38.4 bits (90), Expect = 9e-05
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+L + GD I I +P W G+ L G P
Sbjct: 13 GSPSELPLKKGDVIYITREEPS-GWSLGKLLDGSKEGWVPTA 53
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 39.3 bits (92), Expect = 9e-05
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ +L + ++ +++ E HWW+ Q+ + + G P +
Sbjct: 32 DPQELALRRNEEYCLLD-SSEIHWWRVQDRNG-HEGYVPSS 70
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 38.8 bits (91), Expect = 9e-05
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
D + ++ G++I ++ E +W++G+ T G+FP
Sbjct: 18 DTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPIT 58
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E+ +L AGD++ + + E W +G+ L + +G++P N
Sbjct: 15 QEQDELSFKAGDELTKLGEEDEQGWCRGR-LDSGQLGLYPAN 55
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 38.8 bits (91), Expect = 1e-04
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+L + G+ I + + W +G+N + G+ P +
Sbjct: 22 PGNNELTVTEGEIITVTNPNVGGGWLEGKN-NKGEQGLVPTD 62
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ + +L + GD + I + W +N S G+ P
Sbjct: 13 ENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEE 53
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 38.4 bits (90), Expect = 1e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ + +L + GD + I + W +N S G+ P
Sbjct: 17 ENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEE 57
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 38.6 bits (90), Expect = 1e-04
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNI-------GMFPRN 234
L AGD++ +++ WW ++L G P N
Sbjct: 20 TAEDLSFRAGDKLQVLD-TSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 38.2 bits (89), Expect = 2e-04
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 191 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 241
+ DE + GD ++ + E W NL T G+ ++++ + R
Sbjct: 19 DTDE---ISFLKGDMFIVHN-ELEDGWMWVTNLRTDEQGLIVEDLVEEVGR 65
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 40.9 bits (96), Expect = 2e-04
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDRE-GERLPRPEA----CPVEVYA 152
+ D G +++ + P L +R+ + P P ++ A
Sbjct: 180 NPQDDIRGIGASLYALLV-NRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISA 238
Query: 153 LMRQCWSKNPAERPKFSTLKDCLYRLTPA 181
+ + + R STL + + + T
Sbjct: 239 VAARSVQGDGGIRSA-STLLNLMQQATAV 266
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ ++ ID GD I +I GD W G + G+FP +
Sbjct: 12 QGDDEISIDPGDIITVIRGDDGSGWTYG----ECDGLKGLFPTS 51
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNG-MQILQKI-DREGERLPRPEACP 147
+ +D W G+++ E+ T G P+ ++L K+ E LP
Sbjct: 199 PDPTKPDYDIRADVWSLGISLVELAT-GQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFS 257
Query: 148 VEVYALMRQCWSKNPAERPKFSTL 171
+ + ++ C +K+ +RPK++ L
Sbjct: 258 GDFQSFVKDCLTKDHRKRPKYNKL 281
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 38.7 bits (90), Expect = 2e-04
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 193 DEEGKLYIDAGDQIVIIEGD----PECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 244
+ E ++ + GD + I+ + WWK + + NIG P N ++ ++R++
Sbjct: 27 NPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG-NIGYIPYNYIEIIKRRKK 81
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 37.7 bits (88), Expect = 2e-04
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+L + GD + I +P W + L G P
Sbjct: 15 GSSSELPLKKGDIVFISRDEPS-GWSLAKLLDGSKEGWVPTA 55
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 37.6 bits (88), Expect = 2e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E G L G++I++ + D E WW G G+FP N
Sbjct: 20 VEPGDLTFTEGEEILVTQKDGE--WWTGS--IGDRSGIFPSN 57
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 40.9 bits (96), Expect = 2e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L+ N + +A D W GV ++EM G P+ + ++ + I E R PR PEA
Sbjct: 319 EVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHEKLFELILMEEIRFPRTLGPEAK 377
Query: 147 PVEVYALMRQCWSKNPAER 165
+L+ K+P +R
Sbjct: 378 -----SLLSGLLKKDPKQR 391
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 243
+L + G+ I ++ + W KG +L T G+FP + + P+
Sbjct: 19 HRPEELDLQKGEGIRVLGKYQD-GWLKGLSLLTGRTGIFPSDYVIPVSGPS 68
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E+ +L G+ I +++ D + +WW+G+N G+FP N
Sbjct: 17 VEDNELTFKHGELITVLD-DSDANWWQGENHR--GTGLFPSN 55
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 37.7 bits (88), Expect = 3e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
E+ +L AG+ I +++ +WWKG + IG+FP N
Sbjct: 29 AEDNELTFKAGEIITVLDDSDP-NWWKG----ETHQGIGLFPSN 67
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 37.9 bits (88), Expect = 3e-04
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 17/81 (20%)
Query: 159 SKNPAERPKFSTLKDC--LYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECH 216
+ + +F+ + +Y TP DE L + GD I + +
Sbjct: 4 GSSGSRDIRFANHETLQVIYPYTP---------QNDDE---LELVPGDFIFMSPMEQTST 51
Query: 217 ---WWKGQNLSTFNIGMFPRN 234
W G +L+T G+ P N
Sbjct: 52 SEGWIYGTSLTTGCSGLLPEN 72
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 37.5 bits (87), Expect = 3e-04
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKG----QNLSTFNIGMFPRNIMDPMRRK 242
+ L + AGD I ++E P+ WKG T IG FP I++ + ++
Sbjct: 31 HDPTALNVRAGDVITVLEQHPD-GRWKGHIHESQRGTDRIGYFPPGIVEVVSKR 83
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 36.8 bits (86), Expect = 4e-04
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
E+G+L GD I +++ +WWKG + GMFPRN
Sbjct: 14 QEDGELGFRRGDFIHVMDNSDP-NWWKG----ACHGQTGMFPRN 52
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 37.2 bits (87), Expect = 4e-04
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E +L + GD++ +++ + W+ G + T G FP N
Sbjct: 19 QNEDELELREGDRVDVMQQCDD-GWFVGVSRRTQKFGTFPGN 59
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 36.9 bits (86), Expect = 4e-04
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 241
+L + D + +++ + WWK ++ + G P NI+ P
Sbjct: 21 NSSELSVKQRDVLEVLDDSRK--WWKVRDPAG-QEGYVPYNILTPYPA 65
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 36.9 bits (86), Expect = 4e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQ-NLSTFNIGMFPRN 234
D + +L G+ I++ + + WW G G+FP +
Sbjct: 22 DNDDELTFIEGEVIIVTGEEDQ-EWWIGHIEGQPERKGVFPVS 63
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 36.8 bits (86), Expect = 4e-04
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ L I G+++ ++ + W + Q + G P
Sbjct: 18 GDNTLSITKGEKLRVLGYNHNGEWCEAQTKN--GQGWVPSA 56
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 36.6 bits (85), Expect = 5e-04
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN------IGMFPRN 234
++ + GD + ++ WWK + T N G P
Sbjct: 14 SPREVTMKKGDILTLLN-STNKDWWKVEVKITVNGKTYERQGFVPAA 59
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 36.5 bits (85), Expect = 5e-04
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 180 PAVMKATQN-CHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIM 236
P KA Q ++ L ++ GD + + + W+G+ N G+FP +
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGE----VNGRKGLFPFTHV 55
Query: 237 DPMRRKQPDD 246
+ PD+
Sbjct: 56 KIFDPQNPDE 65
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 39.8 bits (94), Expect = 5e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L + ++A D W G +++M T GA P+ G N + + KI + LP EA
Sbjct: 191 EILMRSGHNRAVDWWSLGALMYDMLT-GAPPFTGENRKKTIDKILKCKLNLPPYLTQEAR 249
Query: 147 PVEVYALMRQCWSKNPAER 165
L+++ +N A R
Sbjct: 250 -----DLLKKLLKRNAASR 263
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 36.4 bits (85), Expect = 5e-04
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
++G L + GD++ ++E W+KG + N G+FP N
Sbjct: 14 QQDGDLGLKPGDKVQLLEKLSP-EWYKG----SCNGRTGIFPAN 52
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 39.5 bits (93), Expect = 5e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L+ N + +A D W GV ++EM G P+ + ++ + I E R PR PEA
Sbjct: 175 EVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHERLFELILMEEIRFPRTLSPEAK 233
Query: 147 PVEVYALMRQCWSKNPAER 165
+L+ K+P +R
Sbjct: 234 -----SLLAGLLKKDPKQR 247
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 36.4 bits (85), Expect = 6e-04
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 193 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFN--IGMFPRN 234
+E G L GD I I++ D + WW G N G+FP N
Sbjct: 15 EESGDLPFRKGDVITILKKSDSQNDWWTG----RVNGREGIFPAN 55
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 36.5 bits (85), Expect = 6e-04
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 239
+ DE + GD ++ + E W NL T G+ ++++ +
Sbjct: 20 PDTDE---ISFLKGDMFIVHN-ELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 36.6 bits (85), Expect = 6e-04
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
DE + + D +++++ + W G+ L G FP +
Sbjct: 32 DE---VTLQQADVVLVLQQED--GWLYGERLRDGETGWFPED 68
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ +L I G+ I ++ E W +G N GMFP N
Sbjct: 13 VHDDELTIRVGEIIRNVKKLQEEGWLEG----ELNGRRGMFPDN 52
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 36.6 bits (85), Expect = 8e-04
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 193 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFN--IGMFPRN 234
+ G L AGD+I +I D WW+G G+FP N
Sbjct: 29 QQPGDLNFQAGDRITVISKTDSHFDWWEG----KLRGQTGIFPAN 69
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 35.6 bits (83), Expect = 8e-04
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
E G+L GD I +I D +WW+G N G+FP N
Sbjct: 14 QESGELAFKRGDVITLINKDDP-NWWEG----QLNNRRGIFPSN 52
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 36.2 bits (84), Expect = 9e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ +L I GD I + D E WW G + G FP N
Sbjct: 18 NRSDELTIHRGDIIRVFFKDNE-DWWYGS-IGKGQEGYFPAN 57
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 37.7 bits (87), Expect = 9e-04
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPMR 240
+ +L + GD I I+ + WW+G IG FP N ++
Sbjct: 18 DRSELSLKEGDIIKILNKKGQQGWWRG----EIYGRIGWFPSNYVEEDY 62
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 36.7 bits (85), Expect = 9e-04
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECH----WWKGQNLSTFNIGMFPRN 234
+ +L + GD++ ++ D WW GQ L + +G+FP N
Sbjct: 42 GDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQ-LPSGRVGVFPSN 85
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 38.7 bits (91), Expect = 0.001
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L ++SD W G I+++ G P+ N I QKI + P P+A
Sbjct: 202 ELLTEKSACKSSDLWALGCIIYQLVA-GLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKAR 260
Query: 147 PVEVYALMRQCWSKNPAER 165
L+ + + +R
Sbjct: 261 -----DLVEKLLVLDATKR 274
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 36.1 bits (84), Expect = 0.001
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
E L + GD I ++E E WWKG IG FP N
Sbjct: 19 QENEDLEMRPGDIITLLEDSNE-DWWKG----KIQDRIGFFPAN 57
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 38.7 bits (91), Expect = 0.001
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E + +Q++D W FGV ++EM T G P+ G + + + I + +P+ PEA
Sbjct: 196 EVVNRRGHTQSADWWSFGVLMFEMLT-GTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQ 254
Query: 147 PVEVYALMRQCWSKNPAER 165
+L+R + +NPA R
Sbjct: 255 -----SLLRMLFKRNPANR 268
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 35.7 bits (83), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ +L + GD I ++ E WW+G N GMFP N
Sbjct: 19 QNDDELELKVGDIIEVVGEVEE-GWWEG----VLNGKTGMFPSN 57
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 35.8 bits (83), Expect = 0.001
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
++ L ++ G+ + + + + W+G N G FP
Sbjct: 20 YDKTALALEVGELVKVTKINVS-GQWEG----ECNGKRGHFPFT 58
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 37.8 bits (87), Expect = 0.001
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E L + G+++ I+ WW+ +N G+ P N
Sbjct: 131 RETDLPFEQGERLEILS-KTNQDWWEARNALG-TTGLVPAN 169
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 36.3 bits (84), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ +L + GD I ++ E WW+G N GMFP N
Sbjct: 30 QNDDELELKVGDIIEVVGEVEE-GWWEG----VLNGKTGMFPSN 68
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 38.3 bits (90), Expect = 0.001
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L +++ + D W FGV ++EM G P+ G + ++ I + PR EA
Sbjct: 188 EILLGQKYNHSVDWWSFGVLLYEMLI-GQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAK 246
Query: 147 PVEVYALMRQCWSKNPAER 165
L+ + + + P +R
Sbjct: 247 -----DLLVKLFVREPEKR 260
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 38.4 bits (90), Expect = 0.001
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E + + + ++ D W FGV ++EM G P+ G + ++ Q I P+ EA
Sbjct: 191 EIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAV 249
Query: 147 PVEVYALMRQCWSKNPAER 165
A+ + +K+P +R
Sbjct: 250 -----AICKGLMTKHPGKR 263
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 35.7 bits (83), Expect = 0.001
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ + +L AG + E W +G T N G+ P N
Sbjct: 22 EHDSELSFTAGTVFDNVHPSQEPGWLEG----TLNGKTGLIPEN 61
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 38.5 bits (90), Expect = 0.001
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 91 SLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNG-MQILQKIDREGE-RLPRPEACPV 148
L +S SD W G+T+ E+ P+ Q L+++ E +LP +
Sbjct: 228 ELNQKGYSVKSDIWSLGITMIELAI-LRFPYDSWGTPFQQLKQVVEEPSPQLP-ADKFSA 285
Query: 149 EVYALMRQCWSKNPAERPKFSTL 171
E QC KN ERP + L
Sbjct: 286 EFVDFTSQCLKKNSKERPTYPEL 308
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 193 DEEGKLYIDAGDQIVIIE----GDPECHWWKGQNLSTFNIGMFPRN 234
+ E ++ + GD + I+ + WWK + + NIG P N
Sbjct: 20 NPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG-NIGYIPYN 64
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 38.6 bits (88), Expect = 0.001
Identities = 26/176 (14%), Positives = 44/176 (25%), Gaps = 25/176 (14%)
Query: 63 FGMMRYSQNDCYVMTERKPLPCPWCPMESLK----HNQFSQASDAWMFGVTIWEMFTFGA 118
+ + + L P P +S + +N F D +
Sbjct: 326 LTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNV 385
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
+ D +A R LY
Sbjct: 386 SSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVR--------ALYDY 437
Query: 179 TPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E +L AGD++ +E + E W KG+ L +G++P N
Sbjct: 438 EGQ------------EHDELSFKAGDELTKMEDEDEQGWCKGR-LDNGQVGLYPAN 480
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 38.4 bits (90), Expect = 0.001
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L+ + A D W GV ++EM G P+ N + + I + P +A
Sbjct: 194 EILQEMLYGPAVDWWAMGVLLYEMLC-GHAPFEAENEDDLFEAILNDEVVYPTWLHEDAT 252
Query: 147 PVEVYALMRQCWSKNPAER 165
+++ +KNP R
Sbjct: 253 -----GILKSFMTKNPTMR 266
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 35.3 bits (82), Expect = 0.001
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+L G I + +P WWKG T FP N
Sbjct: 19 KRSDELTFCRGALIHNVSKEPG-GWWKGD-YGTRIQQYFPSN 58
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 35.5 bits (82), Expect = 0.002
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ L + GD I II P W G N +G F
Sbjct: 23 YDTDSLKLKKGDIIDIISKPPM-GTWMG----LLNNKVGTFKFI 61
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ +L I G+ I I + WW+G N G+FP N
Sbjct: 14 HDDELTISVGEIITNIRKEDG-GWWEG----QINGRRGLFPDN 51
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN---IMDPMRRKQPDDIS 248
++ + GD + ++ WWK N G P +DP + +++
Sbjct: 15 SPREVTMKKGDILTLLN-STNKDWWKV----EVNDRQGFVPAAYVKKLDPAQSASRENLG 69
Query: 249 RP 250
P
Sbjct: 70 GP 71
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 35.5 bits (82), Expect = 0.002
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E+ +L G+ I++++ D + +WWKG+N IG+FP N
Sbjct: 30 EDNELTFKHGEIIIVLD-DSDANWWKGENHR--GIGLFPSN 67
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+LY + GD I I + +WWKG T G+ P N
Sbjct: 15 RTPDELYFEEGDIIYITDMSDT-NWWKG----TSKGRTGLIPSN 53
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPMRRKQP 244
+ L D I I D E W+ G N G FP + ++ + P
Sbjct: 22 SDTSLLPFKRNDIITITFKDQENKWFMG----QLNGKEGSFPVDHVEILLSDVP 71
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 34.9 bits (81), Expect = 0.002
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
E +L + GD I I E E WW G T N +G+FP N
Sbjct: 13 QNEDELELKVGDIIDINEEVEE-GWWSG----TLNNKLGLFPSN 51
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 35.4 bits (82), Expect = 0.002
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ ++ D D I IE + WW+G G+FP N
Sbjct: 29 AGDDEISFDPDDIITNIEMIDD-GWWRG----VCKGRYGLFPAN 67
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 34.6 bits (80), Expect = 0.002
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 196 GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPL 251
++ + GD + ++ + WWK + G P + + ++ L
Sbjct: 4 REVTMKKGDILTLLNSTNK-DWWKVEVND--RQGFVPAAYVKKLDSGTGKELVLAL 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 32/282 (11%), Positives = 72/282 (25%), Gaps = 92/282 (32%)
Query: 17 EPCRKPLPPERRGYGTFSVNNICSCQFSSSSLLIL----FFSSSSSSSGDFGMMRYSQND 72
+ C + + F +N + +C + L +L + + +S
Sbjct: 169 DVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 73 CYVMTERKPLPCPWCPMESLKHNQFSQA----SDAWMFGVTIWEMFTFGA---------- 118
+ E + L LK + + W F
Sbjct: 228 HSIQAELRRL---------LKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQ 276
Query: 119 ----------------EPWVGLN---GMQILQK-IDREGERLPRPEAC---PVEVY---A 152
+ L +L K +D + LPR E P +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAE 335
Query: 153 LMR------QCWSKNPAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQI 206
+R W ++ + ++ L L PA + K++ D++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYR------------KMF----DRL 378
Query: 207 VIIEGD---PE---CHWWKGQNLSTFNIGMFPRNIMDPMRRK 242
+ P W ++ + +++ + +
Sbjct: 379 SVFPPSAHIPTILLSLIW--FDVIKSD----VMVVVNKLHKY 414
Score = 36.0 bits (82), Expect = 0.011
Identities = 22/168 (13%), Positives = 44/168 (26%), Gaps = 54/168 (32%)
Query: 104 WMF---GVTIWEMFTFGAE----PWVGLNGMQILQKIDREGERLPRPEACPVEVYALMR- 155
W + + F + ++ I E R + +Y R
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTE----QRQPSMMTRMYIEQRD 117
Query: 156 ------QCWSKNPAERPK-FSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVI 208
Q ++K R + + L+ L L PA + V+
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-----------------------KNVL 154
Query: 209 IEGDPEC--HWWKGQNLSTFNI-GMFPRNI--MDPMRRKQPDDISRPL 251
I+G W ++ + I ++ P+ + L
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Score = 27.5 bits (60), Expect = 4.7
Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 74/246 (30%)
Query: 17 EPCRKPLPPE--RRGYGTFSV----NNICSCQFSSSSLLIL--------------FFSSS 56
E L P R+ + SV +I + L ++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 57 SSSSGDFGMMRYSQNDCYVMTERKPLPCPWCPMESLKHN------QFSQASDAWMFGVTI 110
S S Y+ + K E H + D+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVK------LENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 111 WEMFTF--------GAE--------PWVGLNGMQILQKIDREGERLPRPEACPVEVYALM 154
+ + + E V L+ + QKI + + +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST----AWNASGSILNTL 524
Query: 155 RQ--------CWSKNPAERPKFSTLKDCLYRLTPAVMKATQNCHEI------DEEGKLYI 200
+Q C + ER + + D L ++ ++ + + E+ ++
Sbjct: 525 QQLKFYKPYICDNDPKYER-LVNAILDFLPKIEENLICSKYTD--LLRIALMAEDEAIFE 581
Query: 201 DAGDQI 206
+A Q+
Sbjct: 582 EAHKQV 587
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 35.1 bits (81), Expect = 0.002
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPL 251
++ + GD + ++ WWK + G P + + ++ L
Sbjct: 12 GGREVTMKKGDILTLLN-STNKDWWKVEVND--RQGFVPAAYVKKLDSGTGKELVLAL 66
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 37.6 bits (88), Expect = 0.002
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E L + + D W G ++EM G P+ N ++ I + +L A
Sbjct: 209 EVLHKQPYDRTVDWWCLGAVLYEMLY-GLPPFYSRNTAEMYDNILNKPLQLKPNITNSAR 267
Query: 147 PVEVYALMRQCWSKNPAER 165
L+ K+ +R
Sbjct: 268 -----HLLEGLLQKDRTKR 281
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 35.5 bits (82), Expect = 0.002
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 180 PAVMKATQN-CHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIM 236
P KA Q ++ L ++ GD + + + W+G N G+FP +
Sbjct: 16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEG----EVNGRKGLFPFTHV 70
Query: 237 DPMRRKQPDDISRP 250
+ PD+
Sbjct: 71 KIFDPQNPDENESG 84
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 38.1 bits (88), Expect = 0.002
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVE 149
E + + + ++ D W FGV ++EM G P+ G + ++ Q I P+ + E
Sbjct: 512 EIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPFEGEDEDELFQSIMEHNVAYPK--SMSKE 568
Query: 150 VYALMRQCWSKNPAER 165
A+ + +K+P +R
Sbjct: 569 AVAICKGLMTKHPGKR 584
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 34.9 bits (81), Expect = 0.002
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
E +L + GD I I E E WW G T N +G+FP N
Sbjct: 19 QNEDELELKVGDIIDINEEVEE-GWWSG----TLNNKLGLFPSN 57
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 239
+E +L G++I+I+ WW G+ G P N +
Sbjct: 19 TDETQLSFLRGEKILILRQTTA-DWWWGE--RAGCCGYIPANHVGKH 62
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 35.0 bits (81), Expect = 0.002
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ +L GD + ++ + + +W+K N G P+N
Sbjct: 22 ADDELSFKRGDILKVLNEECDQNWYKA----ELNGKDGFIPKN 60
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 37.5 bits (87), Expect = 0.003
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 100 ASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWS 159
A+D + G T+ + G + +D E P + L+R+
Sbjct: 256 ATDIYTVGRTLAALTL-DLPTRNG-------RYVDGLPEDDPVLKT-YDSYGRLLRRAID 306
Query: 160 KNPAERP 166
+P +R
Sbjct: 307 PDPRQRF 313
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 34.6 bits (80), Expect = 0.003
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN---IMDPMRRKQPDDI 247
++ + GD + ++ WWK + G P +DP + +++
Sbjct: 18 SPREVTMKKGDILTLLN-STNKDWWKVE--VNDRQGFVPAAYVKKLDPAQSASRENL 71
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 37.2 bits (87), Expect = 0.003
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 91 SLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNG-MQILQKIDREGE-RLPRPEACPV 148
L +S SD W G+T+ E+ P+ Q L+++ E +LP +
Sbjct: 184 ELNQKGYSVKSDIWSLGITMIELAI-LRFPYDSWGTPFQQLKQVVEEPSPQLP-ADKFSA 241
Query: 149 EVYALMRQCWSKNPAERPKFSTL 171
E QC KN ERP + L
Sbjct: 242 EFVDFTSQCLKKNSKERPTYPEL 264
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 34.5 bits (80), Expect = 0.003
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+L + GD + I + + +W +G++ +G+FP N
Sbjct: 14 SPKELTLQKGDIVYIHKEVDK-NWLEGEHHG--RLGIFPAN 51
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 35.8 bits (82), Expect = 0.003
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNI-GMFPRN 234
+L + GD + I E W++G + + G+FP++
Sbjct: 71 SGAPQLSLQIGDVVRIQETCG--DWYRGYLIKHKMLQGIFPKS 111
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 34.1 bits (79), Expect = 0.003
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ ++ D D I IE + WW+G G+FP N
Sbjct: 21 AGDDEISFDPDDIITNIEMIDDG-WWRG----VCKGRYGLFPAN 59
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 98 SQASDAWMFGVTIWEMFTFGAEPWVGL---NGMQILQKIDREGERLPRPEACPVEVYALM 154
S A D W GVT +E+ G P+ + +I+ + + P A E+ +L+
Sbjct: 195 SFAVDWWSLGVTAYELLR-GRRPYHIRSSTSSKEIVHTFET--TVVTYPSAWSQEMVSLL 251
Query: 155 RQCWSKNPAER 165
++ NP +R
Sbjct: 252 KKLLEPNPDQR 262
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 34.6 bits (80), Expect = 0.003
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN---IMDPMRRKQP 244
E +L + GD I + + WW+G T N G FP N + R P
Sbjct: 22 TNEDELSVCKGDIIYVTRVEEG-GWWEG----TLNGRTGWFPSNYVREIKSSERSGP 73
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 35.1 bits (81), Expect = 0.004
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ E +L G I ++ D WW+G N G+FP N
Sbjct: 46 NNEDELSFSKGQLINVMNKDDP-DWWQG----EINGVTGLFPSN 84
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 34.3 bits (79), Expect = 0.004
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 185 ATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
++ +D E +L GD I + E ++ G N G+ P N
Sbjct: 18 PRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYG----ELNGQKGLVPSN 65
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 34.2 bits (79), Expect = 0.004
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECH--WWKGQNLSTFN--IGMFPRN---IMDPMRRKQP 244
+ +L GD + ++E D + WW + + G+ P N I+ M K+P
Sbjct: 15 ESPDELSFRKGDIMTVLEQDTQGLDGWWLC----SLHGRQGIVPGNRLKILVGMYDKKP 69
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 34.1 bits (79), Expect = 0.004
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+L + GD + ++ + WWK + N G P
Sbjct: 19 SPRELTVKKGDILTLLNSTNK-DWWKIE----VNGRQGFVPAA 56
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 34.1 bits (79), Expect = 0.004
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+LY + GD I I + + +WWKG T G+ P N
Sbjct: 19 RTPDELYFEEGDIIYITD-MSDTNWWKG----TSKGRTGLIPSN 57
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 33.7 bits (78), Expect = 0.004
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ +L +A D I II+ DP WW G G+FP N
Sbjct: 17 QDTDELSFNANDIIDIIKEDPS-GWWTG----RLRGKQGLFPNN 55
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus
subsp}
Length = 294
Score = 36.4 bits (85), Expect = 0.005
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGMQI-LQKIDREGERLPR--PEACPVEVYALMRQC 157
+D + G+ ++EM G P+ G + I ++ I + + P + ++ +
Sbjct: 193 TDIYSIGIVLYEMLV-GEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRA 251
Query: 158 WSKNPAERPK 167
K+ A R K
Sbjct: 252 TEKDKANRYK 261
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ L GD I+++ W +G +G+FP+
Sbjct: 17 TQPEDLEFQEGDIILVLS-KVNEEWLEG----ESKGKVGIFPKV 55
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 36.3 bits (83), Expect = 0.005
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ E L + G+++ I+ WW+ +N G+ P N
Sbjct: 159 ERETDLPFEQGERLEILS-KTNQDWWEARNALG-TTGLVPAN 198
Score = 33.6 bits (76), Expect = 0.048
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 173 DCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFP 232
+ RL + +L + G +++ + +K + IG P
Sbjct: 241 ELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSN-GMYKAE--LDGQIGSVP 297
Query: 233 RN 234
Sbjct: 298 HT 299
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 33.8 bits (78), Expect = 0.006
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
++ +L D I II E H W G N G FP
Sbjct: 20 DDDELGFRKNDIITIISQKDE-HCWVG----ELNGLRGWFPAK 57
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.9 bits (78), Expect = 0.007
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN---IMDPMRRKQPDDI 247
++ +L ++ GD ++I E E WW G + N G FP +
Sbjct: 19 RQDDELNLEKGDIVIIHEKKEE-GWWFG----SLNGKKGHFPAAYVEELPSNAGNTATKA 73
Query: 248 SRP 250
S P
Sbjct: 74 SGP 76
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 33.9 bits (78), Expect = 0.007
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
D+E +L G I +I+ + + W++G N G+FP N
Sbjct: 29 DKEDELSFQEGAIIYVIKKNDD-GWYEG----VMNGVTGLFPGN 67
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 33.9 bits (78), Expect = 0.007
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
H +L AGD I +++ WW G + G FP +
Sbjct: 19 HVTMANRELAFKAGDVIKVLD-ASNKDWWWG----QIDDEEGWFPAS 60
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 35.8 bits (82), Expect = 0.008
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN-IMDPMRRKQPDDISRP 250
+ +L GD + ++ + + +W+K + G P+N I I R
Sbjct: 13 ADDELSFKRGDILKVLNEECDQNWYKAE--LNGKDGFIPKNYIEMKPHPWFFGKIPRA 68
Score = 34.3 bits (78), Expect = 0.021
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E+G+L GD I +++ + +WWKG GMFPRN
Sbjct: 171 EDGELGFRRGDFIHVMDNS-DPNWWKGA--CHGQTGMFPRN 208
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 34.1 bits (78), Expect = 0.008
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
+ E +L + AG + + E +++G+ L G+ P N
Sbjct: 35 NPEAELPLTAGKYLYVYGDMDEDGFYEGELLDG-QRGLVPSN 75
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ + +L AGD I ++ + W +G T G+FP +
Sbjct: 16 NSKLELNFKAGDVIFLLSRINK-DWLEG----TVRGATGIFPLS 54
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 34.5 bits (79), Expect = 0.008
Identities = 6/43 (13%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNL-STFNIGMFPRN 234
+ + +L + G+ + I + W+ + + G+ P +
Sbjct: 15 ERDDELDVSPGENLSICA-HYDYEWFIAKPINRLGGPGLVPVS 56
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 33.4 bits (77), Expect = 0.008
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 193 DEEGKLYIDAGDQIVIIEGDP--ECHWWKGQNLSTFN--IGMFPRN 234
D +L GD + I+E WWK + G+ P N
Sbjct: 19 DCSDELAFSRGDILTILEQHVPESEGWWKC----LLHGRQGLAPAN 60
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 33.5 bits (77), Expect = 0.008
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+L GD + + E WW+G N G+ P
Sbjct: 23 TAQELSFRRGDVLRLHERASS-DWWRG----EHNGMRGLIPHK 60
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 36.3 bits (84), Expect = 0.008
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDRE--GERLPRPEACP 147
E +K+ +++ + D W G ++EM G P+ ++++R E
Sbjct: 355 EVVKNERYTFSPDWWALGCLLYEMIA-GQSPFQQRKKKIKREEVERLVKEVPEEYSERFS 413
Query: 148 VEVYALMRQCWSKNPAER 165
+ +L Q K+PAER
Sbjct: 414 PQARSLCSQLLCKDPAER 431
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 32.9 bits (76), Expect = 0.009
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+L GD I++ + DP WW+G N G P N
Sbjct: 15 QTGDELTFKEGDTIIVHQKDPA-GWWEG----ELNGKRGWVPAN 53
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 33.6 bits (77), Expect = 0.009
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD 245
++ ++ ++ AG ++ ++E WW + G P + + +QPD
Sbjct: 17 YQKVQDSEISFPAGVEVQVLEKQES-GWWYVRFGE--LEGWAPSHYLVLDENEQPD 69
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 33.5 bits (77), Expect = 0.009
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++ + GD + ++ WWK + G P
Sbjct: 30 SPREVTMKKGDILTLLN-STNKDWWKVE--VNDRQGFVPAA 67
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 33.0 bits (76), Expect = 0.009
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+ +G+L GD I + E +W++G + G FP N
Sbjct: 15 ENQGELGFKEGDIITLTNQIDE-NWYEG----MIHGESGFFPIN 53
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 33.0 bits (76), Expect = 0.009
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 239
E +L + AG+ + +IE + WW G P ++
Sbjct: 20 QENSELSLQAGEVVDVIEKNESG-WWFVSTSE--EQGWVPATYLEAQ 63
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 35.9 bits (83), Expect = 0.010
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGM----QILQKIDREGERLPR--- 142
E L ++ + D + GVT++EM P+ ++ Q++ + P
Sbjct: 359 ELLLGEEYDFSVDYFALGVTLYEMIA-ARGPFRARGEKVENKELKQRVLEQAVTYPDKFS 417
Query: 143 PEACPVEVYALMRQCWSKNPAER 165
P + K+P +R
Sbjct: 418 PASK-----DFCEALLQKDPEKR 435
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 32.9 bits (76), Expect = 0.010
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPM 239
+ + +L + G+ + +++ + +W FN G+ P N ++P+
Sbjct: 19 ETKEELQVMPGNIVFVLKKGND-NWATVM----FNGQKGLVPCNYLEPV 62
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 33.1 bits (76), Expect = 0.010
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 193 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFN--IGMFPRN 234
+ +L + GD + I + WWKG N IG FP
Sbjct: 19 RDMRELSLREGDVVRIYSRIGGDQGWWKG----ETNGRIGWFPST 59
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 33.0 bits (76), Expect = 0.011
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDP-ECHWWKGQNLSTFN--IGMFPRN 234
E +L G+ I +I + E WWKG N G+FP N
Sbjct: 18 TNEDELTFREGEIIHLISKETGEAGWWKG----ELNGKEGVFPDN 58
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 33.1 bits (76), Expect = 0.011
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 193 DEEGKLYIDAGDQIVIIEGDP-ECHWWKGQNLSTFNIGMFPRN 234
+L + A + I + + W G+ + G P
Sbjct: 29 ANSTELSLLADEVITVFSVVGMDSDWLMGERGNQ--KGKVPIT 69
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 35.7 bits (83), Expect = 0.011
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E + +++A D W GV I+EM G P+ +QI +KI R P +
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAA-GYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLK 266
Query: 147 PVEVYALMRQCWSKNPAER 165
L+R + +R
Sbjct: 267 -----DLLRNLLQVDLTKR 280
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 33.6 bits (77), Expect = 0.012
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNL-STFNIGMFPRN---IMDP 238
++ +L G+ + I C W+ + + G+ P I+D
Sbjct: 17 EKADELTTYVGENLFICA-HHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI 65
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 34.7 bits (79), Expect = 0.012
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN-IGMFPRN 234
+L + GD + I E W++G + G+FP++
Sbjct: 29 SGAPQLSLQIGDVVRIQETCG--DWYRGYLIKHKMLQGIFPKS 69
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 32.7 bits (75), Expect = 0.015
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++ L D I ++E +WW G+ G FP++
Sbjct: 22 KKDNHLNFSKHDIITVLEQQE--NWWFGEVHG--GRGWFPKS 59
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 35.0 bits (81), Expect = 0.017
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPV 148
E + + D W G+ EM G P++ N ++ L I G L PE
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNENPLRALYLIATNGTPELQNPEKLSA 244
Query: 149 EVYALMRQCWSKNPAERP 166
+ +C + +R
Sbjct: 245 IFRDFLNRCLEMDVEKRG 262
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 32.7 bits (75), Expect = 0.017
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 234
+L G +++ + + WW+G N G+ P
Sbjct: 21 RTARELSFKKGASLLLYQRASD-DWWEG----RHNGIDGLIPHQ 59
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 35.2 bits (81), Expect = 0.017
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 92 LKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGM---QILQKIDREGERLPR---PEA 145
K + ++D + G ++++ G P+ +I + LP PE
Sbjct: 363 QKGVAYDSSADWFSLGCMLFKLLR-GHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPEL 421
Query: 146 CPVEVYALMRQCWSKNPAER 165
+L+ ++ R
Sbjct: 422 R-----SLLEGLLQRDVNRR 436
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 32.9 bits (75), Expect = 0.017
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 175 LYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
L+ P M + E +E L G I + +++G+ + +G+ P N
Sbjct: 23 LFDYDPLTMSPNPDAAE-EE---LPFKEGQIIKVYGDKDADGFYRGE--TCARLGLIPCN 76
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 32.4 bits (74), Expect = 0.017
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 185 ATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPM 239
+G+L + AGD +++ + ++ G+ G+ P +++D M
Sbjct: 18 PGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE----LGGHRGLVPAHLLDHM 70
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 34.8 bits (81), Expect = 0.019
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E + ++++ D W FG+ I+EM G P+ N M+ +KI R P +
Sbjct: 173 EVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFYDSNTMKTYEKILNAELRFPPFFNEDVK 231
Query: 147 PVEVYALMRQCWSKNPAER 165
L+ + +++ ++R
Sbjct: 232 -----DLLSRLITRDLSQR 245
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 34.6 bits (80), Expect = 0.022
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 93 KHNQFSQASDAWMFGVTIWEMFT----FGAEPWVGLNGMQILQKIDREGERLPRPEACPV 148
H + +D W G ++ M + G + +Q +P+
Sbjct: 219 SHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQN----QLSIPQSPRHSS 274
Query: 149 EVYALMRQCWSKNPAERP 166
++ L+ + +P +RP
Sbjct: 275 ALWQLLNSMMTVDPHQRP 292
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 34.3 bits (79), Expect = 0.027
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPV 148
E + + ++ D W G+ + EM G P+ + +Q ++++ +L
Sbjct: 211 EVISRSLYATEVDIWSLGIMVIEMVD-GEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSP 269
Query: 149 EVYALMRQCWSKNPAERP 166
+ + + ++P ER
Sbjct: 270 VLRDFLERMLVRDPQERA 287
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 34.2 bits (79), Expect = 0.029
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGM-QILQKI-DREGERLPRPEAC--PVEVYALMRQ 156
SD W G+T++E+ T G P+ N + L ++ + +L E +
Sbjct: 210 SDVWSLGITLYELAT-GRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNL 268
Query: 157 CWSKNPAERPKFSTL 171
C +K+ ++RPK+ L
Sbjct: 269 CLTKDESKRPKYKEL 283
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 34.2 bits (79), Expect = 0.032
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPV 148
E++K + +D W G+T+ EM P LN M++L KI + L P V
Sbjct: 192 ETMKDTPYDYKADIWSLGITLIEMAQ-IEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSV 250
Query: 149 EVYALMRQCWSKNPAERP 166
E ++ KNP RP
Sbjct: 251 EFRDFLKIALDKNPETRP 268
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 34.2 bits (79), Expect = 0.033
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDRE-------GERLPR 142
E L+ + + D W GV ++EM G P+ + + + +++
Sbjct: 223 EILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI 281
Query: 143 PEACPVEVYALMRQCWSKNPAER 165
P + V+ ++++ +K+P ER
Sbjct: 282 PRSLSVKAASVLKSFLNKDPKER 304
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 33.8 bits (78), Expect = 0.035
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 100 ASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWS 159
A D W GVT++ FG P++ M + KI + P ++ L+ +
Sbjct: 220 ALDVWAMGVTLYCFV-FGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLD 278
Query: 160 KNPAER 165
KNP R
Sbjct: 279 KNPESR 284
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 33.8 bits (76), Expect = 0.041
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 2/111 (1%)
Query: 140 LPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLY 199
L + + + P+ + + T ++ L
Sbjct: 84 LLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLP 143
Query: 200 IDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRP 250
G+ +VIIE PE WW +N +GM P ++ + R P
Sbjct: 144 FKKGEILVIIE-KPEEQWWSARN-KDGRVGMIPVPYVEKLVRSSPHGKHGN 192
Score = 33.1 bits (74), Expect = 0.075
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 5/128 (3%)
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTLKDCLYRL 178
E V + + +P P + +
Sbjct: 179 EKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPV 238
Query: 179 TPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 238
++ C L ++ GD + + + W+G+ G+FP +
Sbjct: 239 FAKAIQKRVPCAYDKTA--LALEVGDIVKVTRMNIN-GQWEGE--VNGRKGLFPFTHVKI 293
Query: 239 MRRKQPDD 246
+ PD+
Sbjct: 294 FDPQNPDE 301
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 33.7 bits (78), Expect = 0.043
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDRE-------GERLPR 142
E L+ + + D W GV ++EM G P+ + + + +++
Sbjct: 180 EILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI 238
Query: 143 PEACPVEVYALMRQCWSKNPAER 165
P + V+ ++++ +K+P ER
Sbjct: 239 PRSLSVKAASVLKSFLNKDPKER 261
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 33.0 bits (75), Expect = 0.046
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
++ + GD + ++E WW Q G P +
Sbjct: 24 SGSEMALSTGDVVEVVEKSES-GWWFCQM--KAKRGWIPAS 61
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural
genomics consortium, TBSG domain, signal transduction;
HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB:
3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A*
3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Length = 311
Score = 33.4 bits (77), Expect = 0.050
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 100 ASDAWMFGVTIWEMFTFGAEPWVGLNGMQI-LQKIDREGERLPRP----EACPVEVYALM 154
SD + G ++E+ T G P+ G + + + Q + E P E ++ A++
Sbjct: 199 RSDVYSLGCVLYEVLT-GEPPFTGDSPVSVAYQHVR---EDPIPPSARHEGLSADLDAVV 254
Query: 155 RQCWSKNPAERPK 167
+ +KNP R +
Sbjct: 255 LKALAKNPENRYQ 267
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 32.9 bits (74), Expect = 0.059
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 246
+E L GD + I + PE WW ++ GM P ++ R
Sbjct: 149 DEEDLPFKKGDILRIRD-KPEEQWWNAEDSEG-KRGMIPVPYVEKYRPASASV 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.070
Identities = 44/288 (15%), Positives = 79/288 (27%), Gaps = 106/288 (36%)
Query: 14 NYTEPCRKP-LPPERRGYGTFSVNNICSCQFSSSSLLILFFSSSSSSSGDF-----GMMR 67
+Y + P G + + S L+ + + S F +
Sbjct: 248 HYVVTAKLLGFTP-----GEL-RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 68 Y-------SQNDCYVMTERKPLPCPWCPM--ESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
+ Y P + +SL++N+ S M ++
Sbjct: 302 VLFFIGVRCY-EAY------PNTSLPPSILEDSLENNE-GVPS--PMLSIS--------- 342
Query: 119 EPWVGLNGMQILQKIDREGERLPRPEAC----------------PVEVYAL--------- 153
L Q+ +++ LP + P +Y L
Sbjct: 343 ----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 154 ---MRQCWSKNP-AER-PKFSTLKDCLYR------------LTPAVMKATQNCHEIDEEG 196
+ Q S+ P +ER KFS R L PA ++ + +
Sbjct: 399 PSGLDQ--SRIPFSERKLKFSN------RFLPVASPFHSHLLVPASDLINKDLVKNNVS- 449
Query: 197 KLYIDAGD-QIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 243
+A D QI P + G +L + G I+D + R
Sbjct: 450 ---FNAKDIQI------PVYDTFDGSDLRVLS-GSISERIVDCIIRLP 487
Score = 29.2 bits (65), Expect = 1.4
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 48/145 (33%)
Query: 73 CYV---MTERKPLPCPWCPMES--LKHNQFSQASDAWMFGVTIWEMFTFG----AEPWVG 123
Y+ + ++P S + +A + + FG + +
Sbjct: 125 NYITARIMAKRPFDKK---SNSALFRA---VGEGNAQLVAI-------FGGQGNTDDY-- 169
Query: 124 LNGMQILQK---------IDREGERLPRPEACPVEVYALMRQ-----CWSKNPAERPKFS 169
++ L + I E L ++ + Q W +NP+ P
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP--- 226
Query: 170 TLKDCLYRLTPAV----MKATQNCH 190
D Y L+ + + Q H
Sbjct: 227 ---DKDYLLSIPISCPLIGVIQLAH 248
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 33.2 bits (76), Expect = 0.073
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 99 QASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACP 147
D W GV ++EM G P+ + ++ KI ER P
Sbjct: 260 PECDWWSLGVCMYEMLY-GETPFYAESLVETYGKIMNHKERFQFPTQVT 307
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.075
Identities = 33/193 (17%), Positives = 54/193 (27%), Gaps = 57/193 (29%)
Query: 89 MESLKHNQFSQASD---AWMFGVTIWEMFTFGAEPWVG---------LNGMQILQK---- 132
ME+ +FS AW+ G + P+ G ++ + K
Sbjct: 840 MEA--FGEFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETS 897
Query: 133 -IDREGERLPRPEACPVEVYALMRQCWSKNPAERPKFSTL---KDCLYRLTPAVMKATQN 188
++ G RL PE Y P ++ + +D L P
Sbjct: 898 ILEHSGIRLIEPELF--NGYN---------PEKKEMIQEVIVEED----LEPFEASK--- 939
Query: 189 CHEIDEEGKLYIDA-GDQIVIIEGDPECHWW----KGQNLSTFNIGMFPRNI-------M 236
E + + GD++ I E + KG L F R +
Sbjct: 940 -----ETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGW 994
Query: 237 DPMRRKQPDDISR 249
+ DDI
Sbjct: 995 NAKTYGISDDIIS 1007
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 32.6 bits (75), Expect = 0.094
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 97 FSQASDAWMFGVTIWEMFTFGAEPWVGL----NGMQILQKIDREGERLPR---PEACPVE 149
+A D W GV ++E+ T GA P+ + +I ++I + P+ A
Sbjct: 239 HDKAVDWWSLGVLMYELLT-GASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAK--- 294
Query: 150 VYALMRQCWSKNPAER 165
L+++ K+P +R
Sbjct: 295 --DLIQRLLMKDPKKR 308
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 32.7 bits (75), Expect = 0.098
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPV 148
E ++ ++ +D W G+T EM G P+ ++ M+ + I +PE
Sbjct: 195 EVIQEIGYNCVADIWSLGITAIEMAE-GKPPYADIHPMRAIFMIPTNPPPTFRKPELWSD 253
Query: 149 EVYALMRQCWSKNPAERP 166
++QC K+P +R
Sbjct: 254 NFTDFVKQCLVKSPEQRA 271
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 32.3 bits (74), Expect = 0.11
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 102 DAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPVEVYAL------- 153
D W FG+T E+ T GA P+ M++L + L +
Sbjct: 209 DIWSFGITAIELAT-GAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKM 267
Query: 154 MRQCWSKNPAERP 166
+ C K+P +RP
Sbjct: 268 ISLCLQKDPEKRP 280
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 32.5 bits (73), Expect = 0.14
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 190 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
H+ ++ ++ GD I+ + G+ + KG N G++P
Sbjct: 451 HQPRTADEIPMEPGD-IIGVAGNHWDGYSKGVNRKLGRTGLYPSY 494
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 30.0 bits (68), Expect = 0.14
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISR 249
E +L I +E WW+G FP N ++ M P+ I R
Sbjct: 18 QREDELTFIKSAIIQNVEKQEG-GWWRGD-YGGKKQLWFPSNYVEEM--VNPEGIHR 70
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 32.0 bits (73), Expect = 0.15
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSK 160
SD W G+T EM GA P ++ M+ L I R + + + + + C K
Sbjct: 215 SDLWSLGITAIEMAE-GAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVK 273
Query: 161 NPAERP 166
N ++RP
Sbjct: 274 NHSQRP 279
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 32.0 bits (72), Expect = 0.21
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 18/103 (17%)
Query: 50 ILFFSSSSSSS---GDFGMMRYSQNDCYVMTERKPLPCPWC--PM----ESLKHNQFSQA 100
I+ D G + + E L+ +++
Sbjct: 152 IVLQPGPQRLIHKIIDLGYAKELDQGELCTE--------FVGTLQYLAPELLEQKKYTVT 203
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRP 143
D W FG +E T G P++ RE
Sbjct: 204 VDYWSFGTLAFECIT-GFRPFLPNWQPVQWHGKVREKSNEHIV 245
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 29.6 bits (66), Expect = 0.26
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 17/65 (26%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECH--------------WWKGQNLSTFNIGMFPRN---I 235
+ L + GD +V+ + W G N T G FP
Sbjct: 23 ERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEF 82
Query: 236 MDPMR 240
+ P+
Sbjct: 83 LGPVA 87
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 31.5 bits (70), Expect = 0.26
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRP 250
+E L GD + I + E WW ++ S GM P ++ R +
Sbjct: 147 DEEDLPFKKGDILRIRDKPEE-QWWNAED-SEGKRGMIPVPYVEKYRPASASVSALI 201
Score = 31.1 bits (69), Expect = 0.30
Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 246
++ L ++ G+ + + + + W+G+ G FP + + ++ P++
Sbjct: 251 YDKTALALEVGELVKVTKINVS-GQWEGE--CNGKRGHFPFTHVRLLDQQNPEE 301
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 31.1 bits (71), Expect = 0.28
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 99 QASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYA--LMRQ 156
+ D + G+ +EM G+ + IL+K+ P ++R
Sbjct: 210 EKIDMYSLGIIFFEMIY-PFST--GMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRL 266
Query: 157 CWSKNPAERPKFSTLKDCL 175
+P +RP + L
Sbjct: 267 LIDHDPNKRP---GARTLL 282
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 31.3 bits (71), Expect = 0.31
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 62 DFGMMRYSQNDCYVMTERKPLPC--P-WCPMESLKHNQF-------SQASDAWMFGVTIW 111
DFG+ + + P W E L+ + +++ D + G +
Sbjct: 171 DFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFY 230
Query: 112 EMFTFGAEPWVGLNGMQ--ILQKI-DREGERLPRPEACPVEVYALMRQCWSKNPAERPKF 168
+ + G P+ + I++ I + + + E L+ Q +P +RP
Sbjct: 231 YILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRP-- 288
Query: 169 STLKDCL 175
T L
Sbjct: 289 -TAMKVL 294
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 28.3 bits (64), Expect = 0.39
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 193 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 234
E +L I +E WW+G FP N
Sbjct: 15 QREDELTFTKSAIIQNVEKQDGG-WWRGD-YGGKKQLWFPSN 54
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 30.6 bits (69), Expect = 0.40
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 83 PCPWCPMESLKHNQFSQASDAWMFGVTIWEMFT 115
+ +E L + ++ +D W +E+ T
Sbjct: 256 TRQYRSLEVLIGSGYNTPADIWSTACMAFELAT 288
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 30.5 bits (69), Expect = 0.48
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPVEVYALMRQCWS 159
D W G ++ + F P+ ++I+ G+ +P + ++L+R
Sbjct: 234 QDIWALGCILYLL-CFRQHPFEDGAKLRIVN-----GKYSIPPHDTQYTVFHSLIRAMLQ 287
Query: 160 KNPAERP 166
NP ER
Sbjct: 288 VNPEERL 294
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 28.1 bits (63), Expect = 0.49
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 194 EEGKLYIDAGDQIVIIEGDPECHWWKGQ 221
++ + GD + ++ WWK +
Sbjct: 34 SPREVTMKKGDILTLLN-STNKDWWKVE 60
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 30.1 bits (68), Expect = 0.65
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 94 HNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPE 144
+ D W GV +EMF G P+ + + KI E L P
Sbjct: 244 TGSYGPECDWWALGVFAYEMFY-GQTPFYADSTAETYGKIVHYKEHLSLPL 293
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 30.0 bits (68), Expect = 0.65
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR-PEACPV 148
E +K + + +D W G+T E+ G P L+ M++L I + P
Sbjct: 189 EVIKQSAYDSKADIWSLGITAIELAR-GEPPHSELHPMKVLFLIPKNNP--PTLEGNYSK 245
Query: 149 EVYALMRQCWSKNPAERP 166
+ + C +K P+ RP
Sbjct: 246 PLKEFVEACLNKEPSFRP 263
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 29.7 bits (67), Expect = 0.83
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 94 HNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPE 144
+ + D W GV ++EM G P+ + + KI L P+
Sbjct: 247 DGYYGRECDWWSVGVFLYEMLV-GDTPFYADSLVGTYSKIMNHKNSLTFPD 296
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 29.8 bits (68), Expect = 0.95
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 177 RLTPAVMKATQNCHEIDEEGKLYIDAGDQIV 207
P +++ + D +G+ +D +
Sbjct: 23 TFEPMIIERAKGSFVYDADGRAILDFTSGQM 53
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 27.7 bits (61), Expect = 1.0
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 174 CLYRLTPAVMKATQNCHEID-EEGKLYI---DAGDQIVIIEGDPECH----WWKGQNLST 225
LY + +ID G + + + +G W G N +T
Sbjct: 10 ALYDYKK------EREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETT 63
Query: 226 FNIGMFPRNIMDPMRRKQ 243
G FP ++ + RK+
Sbjct: 64 GERGDFPGTYVEYIGRKK 81
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A
{Mycobacterium tuberculosis}
Length = 309
Score = 29.5 bits (67), Expect = 1.0
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPRPEA---- 145
E + + +D + ++E T G+ P+ G + I++ +PRP
Sbjct: 205 ERFSESHATYRADIYALTCVLYECLT-GSPPYQGDQLSVMGAHINQA---IPRPSTVRPG 260
Query: 146 CPVEVYALMRQCWSKNPAERP 166
PV A++ + +KNP +R
Sbjct: 261 IPVAFDAVIARGMAKNPEDRY 281
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 28.9 bits (65), Expect = 1.7
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 114 FTFGAEPWVGLNGMQILQKIDREGE---RLPRPEAC---PVEVYALMRQCWSKNPAERPK 167
F G+ PW GL QK +R E P C P E + C S ++P
Sbjct: 208 FNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPD 267
Query: 168 FSTLKDCLYRL 178
+S L+ L
Sbjct: 268 YSYLRQLFRNL 278
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 122 VGLNGMQILQKIDREGERLPRPEACPVE-VYALMRQCWSKNPAE-RPKFSTLKDCLYRLT 179
+G+ +Q L K+ ++G V + + + + + L+ + +
Sbjct: 165 IGVGRVQKLYKVIKKGNSPSLENLGEVMFGRIGGLYGFYDDYDDIEFRVNKLERQIKSIL 224
Query: 180 PAVMKAT 186
++K T
Sbjct: 225 DNLVKKT 231
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 28.2 bits (63), Expect = 2.8
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 29/108 (26%)
Query: 50 ILFFSSSSSSS----GDFGMMRYSQND----------CYV---MTERKPLPCPWCPMESL 92
I+ S DFG R ++D Y+ M ER L
Sbjct: 143 IMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKD------- 195
Query: 93 KHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNG----MQILQKIDRE 136
++ D W GVT + T G+ P+ G +++ KI
Sbjct: 196 HQKKYGATVDLWSIGVTFYHAAT-GSLPFRPFEGPRRNKEVMYKIITG 242
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 28.3 bits (63), Expect = 2.9
Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 41/123 (33%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFT---------------------------------- 115
E L+ +S SD W G+++ EM
Sbjct: 200 ERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRT 259
Query: 116 -------FGAEPWVGLNGMQILQKIDREGERLPRPEACPVEVYALMRQCWSKNPAERPKF 168
FG + + ++L I E +E + +C KNPAER
Sbjct: 260 PGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADL 319
Query: 169 STL 171
L
Sbjct: 320 KQL 322
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 27.9 bits (63), Expect = 3.0
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 174 CLYRLTPAVMKATQNCHEIDEEGKLYID 201
+ P +D +G +ID
Sbjct: 41 GVGSTAPVYAVDADGGVIVDADGNSFID 68
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 28.2 bits (63), Expect = 3.0
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 102 DAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGE-RLPRPEACPVEVYALMRQCWSK 160
D W G+T E+ P +N M L I + L + C K
Sbjct: 235 DVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPALQSGHWSE-YFRNFVDSCLQK 292
Query: 161 NPAERP 166
P +RP
Sbjct: 293 IPQDRP 298
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas;
spindle assembly checkpoint, mitosis, kinase,
activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo
sapiens}
Length = 365
Score = 28.0 bits (62), Expect = 3.3
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 62 DFG---MMRYSQNDCYVMTERKPLPCPWCPMESLKHNQFSQASDAWMFGVTIWEMFTFGA 118
D G M+ + + C E L + ++ D + T++ M FG
Sbjct: 226 DLGQSIDMKLFPKGTIFTAKCET-SGFQCV-EMLSNKPWNYQIDYFGVAATVYCML-FGT 282
Query: 119 EPWVGLNGMQILQKIDREGERLPRPE 144
V G + K + RLP +
Sbjct: 283 YMKVKNEGGEC--KPEGLFRRLPHLD 306
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 27.6 bits (62), Expect = 3.4
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 90 ESLKHNQFSQASDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKIDREGERLPR---PEAC 146
E ++ + D W GV +E G P+ + ++I R P A
Sbjct: 177 EMIEGRMHDEKVDLWSLGVLCYEFLV-GKPPFEANTYQETYKRISRVEFTFPDFVTEGAR 235
Query: 147 PVEVYALMRQCWSKNPAERPKFSTLKDCL 175
L+ + NP++RP L++ L
Sbjct: 236 -----DLISRLLKHNPSQRP---MLREVL 256
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 27.5 bits (62), Expect = 4.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 174 CLYRLTPAVMKATQNCHEIDEEGKLYID 201
+ ++ P +NC D EG+ Y+D
Sbjct: 18 GVGQIHPIFADRAENCRVWDVEGREYLD 45
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 27.5 bits (62), Expect = 4.1
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 176 YRLTPAVMKATQNCHEIDEEGKLYID 201
R P + + I+E G+ ID
Sbjct: 22 LRFFPLAISGGRGARLIEENGRELID 47
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 27.5 bits (62), Expect = 4.4
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 174 CLYRLTPAVMKATQNCHEIDEEGKLYID 201
+ P D +G ID
Sbjct: 38 GVGTTMPVYAVRAGGGIVEDVDGNRLID 65
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 27.4 bits (61), Expect = 4.4
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 62 DFGMMRYSQNDC--YVMTE--RKP---LPCPWCPMESLKHNQFSQASDAWMFGVTIWEMF 114
D G + + T R P L PW +D W I+E+
Sbjct: 181 DLGNACWYDEHYTNSIQTREYRSPEVLLGAPW-----------GCGADIWSTACLIFELI 229
Query: 115 T 115
T
Sbjct: 230 T 230
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 27.2 bits (61), Expect = 6.3
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 176 YRLTPAVMKATQNCHEIDEEGKLYIDAGDQI 206
+ ++ + +D +G +D QI
Sbjct: 42 AVHFFCNYEESRGNYLVDVDGNRMLDLYSQI 72
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 26.8 bits (60), Expect = 6.7
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 122 VGLNGMQILQKIDREGERLPRPEACPV 148
+ + Q+L +I ++ ++ + V
Sbjct: 193 IEEDYTQVLYEITKKNGKIIKDRLFDV 219
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 26.7 bits (60), Expect = 8.8
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 179 TPAVMKATQNCHEIDEEGKLYID 201
P M+ + D +G YID
Sbjct: 35 NPLFMERGKGSKVYDIDGNEYID 57
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron,
metal-binding, protein biosynthesis; HET: NVC; 1.56A
{Mycobacterium tuberculosis}
Length = 197
Score = 26.0 bits (58), Expect = 9.0
Identities = 6/14 (42%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 189 CHEIDE-EGKLYID 201
HE +G LY+D
Sbjct: 147 QHETGHLDGFLYLD 160
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 26.4 bits (58), Expect = 9.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 101 SDAWMFGVTIWEMFTFGAEPWVGLNGMQILQKI 133
SD + G+T E+ G P+ + Q+L +
Sbjct: 218 SDIYSVGITACELAN-GHVPFKDMPATQMLLEK 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.446
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,912,430
Number of extensions: 218069
Number of successful extensions: 909
Number of sequences better than 10.0: 1
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 322
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)