BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2788
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 7 PAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQ 66
P +RP F L+D L P M+A Q+ E D KL+I D I +IEG E +WW+GQ
Sbjct: 260 PEDRPTFVALRDFLLEAQPTDMRALQDFEEPD---KLHIQMNDVITVIEGRAENYWWRGQ 316
Query: 67 NLSTFNIGMFPRNIM 81
N T +G FPRN++
Sbjct: 317 NTRTLCVGPFPRNVV 331
>pdb|1CF4|B Chain B, Cdc42ACK GTPASE-Binding Domain Complex
Length = 44
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 91 DISRPLRNSVIHTGHGDPWGK-SWGSPSHIDPMYLNN 126
DIS+PL+NS IHTGHGD + WG P ID +YL N
Sbjct: 8 DISQPLQNSFIHTGHGDSDPRHCWGFPDRIDELYLGN 44
>pdb|1K1Z|A Chain A, Solution Structure Of N-Terminal Sh3 Domain Mutant(P33g)
Of Murine Vav
Length = 78
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 41 GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
G L ++ GD + + + + E +WW+G+N +T +G FP N + P
Sbjct: 33 GFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY 76
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 33 NCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD 90
+ +E +G L + G+Q+ I+E E WWK Q+L+T G P N + +P+
Sbjct: 19 HSYEPSHDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFNFVAKANSLEPE 74
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 33 NCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD 90
+ +E +G L + G+Q+ I+E E WWK Q+L+T G P N + +P+
Sbjct: 19 HSYEPSHDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFNFVAKANSLEPE 74
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
Length = 167
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 33 NCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD 90
+ +E +G L + G+Q+ I+E E WWK Q+L+T G P N + +P+
Sbjct: 11 HSYEPSHDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFNFVAKANSLEPE 66
>pdb|1GCP|A Chain A, Crystal Structure Of Vav Sh3 Domain
pdb|1GCP|B Chain B, Crystal Structure Of Vav Sh3 Domain
pdb|1GCP|C Chain C, Crystal Structure Of Vav Sh3 Domain
pdb|1GCP|D Chain D, Crystal Structure Of Vav Sh3 Domain
pdb|1GCQ|C Chain C, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 70
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
L ++ GD + + + + E +WW+G+N +T +G FP N + P
Sbjct: 27 LRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 36 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
E E+ +L G +I+I+ D + +WWKG+N IG+FP N +
Sbjct: 27 EAVEDNELTFKHG-EIIIVLDDSDANWWKGENHR--GIGLFPSNFV 69
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 88
+ + +L I +GD++ I++ WW Q + + G+ P ++P+R K+
Sbjct: 18 ESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKK 68
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 88
++ D L G++ I++ P WW+ ++L+T G P N + P+ Q
Sbjct: 15 YQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPVDSIQ 68
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
L GDQ+V++E E WWK ++L+T G P N +
Sbjct: 26 LSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 62
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRK 87
E+G+L GD I +++ + + +WWKG GMFPRN + P+ R
Sbjct: 15 EDGELGFRRGDFIHVMD-NSDPNWWKGACHG--QTGMFPRNYVTPVNRN 60
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86
E+G+L GD I +++ + + +WWKG GMFPRN + P+ R
Sbjct: 15 EDGELGFRRGDFIHVMD-NSDPNWWKGACHG--QTGMFPRNYVTPVNR 59
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
L GDQ+V++E E WWK ++L+T G P N +
Sbjct: 19 LSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 55
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 39 EEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86
E+G+L GD I +++ DP +WWKG GMFPRN + P+ R
Sbjct: 171 EDGELGFRRGDFIHVMDNSDP--NWWKGACHG--QTGMFPRNYVTPVNR 215
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
L GDQ+V++E E WWK ++L+T G P N +
Sbjct: 42 LSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 78
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
L GDQ+V++E E WWK ++L+T G P N +
Sbjct: 25 LSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 61
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
L GDQ+V++E E WWK ++L+T G P N +
Sbjct: 20 LSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 56
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
L GDQ+V++E E WWK ++L+T G P N +
Sbjct: 26 LSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 62
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 42 KLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRNSV 100
+LYI+ GD I+ I + +WWKG S G+ P N + +Q + I PL +
Sbjct: 30 ELYIEEGD-IIYITDXSDTNWWKGT--SKGRTGLIPSNYV----AEQAESIDNPLHEAA 81
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
E E+ +L AG+ I +++ D + +WWKG+ IG+FP N +
Sbjct: 26 FEAAEDNELTFKAGEIITVLD-DSDPNWWKGETHQ--GIGLFPSNFV 69
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 48 GDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
GDQ+V++E E WWK ++L+T G P N +
Sbjct: 22 GDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 53
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 48 GDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
GDQ+V++E E WWK ++L+T G P N +
Sbjct: 25 GDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 56
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 48 GDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
GDQ+V++E E WWK ++L+T G P N +
Sbjct: 25 GDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 56
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRNSVIH 102
L G+ +VIIE PE WW +N +GM P ++ + R P H
Sbjct: 142 LPFKKGEILVIIE-KPEEQWWSARNKDG-RVGMIPVPYVEKLVRSSP------------H 187
Query: 103 TGHGDPWGKSWGSP 116
HG+ S+G P
Sbjct: 188 GKHGNRNSNSYGIP 201
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRNSVIH 102
L G+ +VIIE PE WW +N +GM P ++ + R P H
Sbjct: 142 LPFKKGEILVIIE-KPEEQWWSARNKDG-RVGMIPVPYVEKLVRSSP------------H 187
Query: 103 TGHGDPWGKSWGSP 116
HG+ S+G P
Sbjct: 188 GKHGNRNSNSYGIP 201
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 36 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81
E E+ +L G+ I +++ D + +WW+G+N G+FP N +
Sbjct: 15 EAVEDNELTFKHGELITVLD-DSDANWWQGENHR--GTGLFPSNFV 57
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
E+G+L GD I +++ + + +WWKG GMFPRN + P+
Sbjct: 13 EDGELGFRRGDFIHVMD-NSDPNWWKGACHG--QTGMFPRNYVTPV 55
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 29.6 bits (65), Expect = 0.83, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85
+E E +L AGD++ +E + E W KG+ L +G++P N ++ ++
Sbjct: 437 YEGQEHDELSFKAGDELTKMEDEDEQGWCKGR-LDNGQVGLYPANYVEAIQ 486
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G++ I+ E WW+ ++L+T G P N + P+ Q ++
Sbjct: 12 YEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 67
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G++ I+ E WW+ ++L+T G P N + P+ Q ++
Sbjct: 14 YEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 69
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 48 GDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 88
G++ I++GD WW+ ++L+T G P N + P+ Q
Sbjct: 28 GEKFQILDGDS-GDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G+++ I+ + E WW +LST G P N + P Q ++
Sbjct: 11 YESRTETDLSFKKGERLQIV-NNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEE 66
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G++ I+ E WW+ ++L+T G P N + P+ Q ++
Sbjct: 12 YEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 67
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G+++ I+ + E WW +LST G P N + P Q ++
Sbjct: 11 YESRTETDLSFKKGERLQIV-NNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEE 66
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G+++ I+ + E WW +LST G P N + P Q ++
Sbjct: 11 YESRTETDLSFKKGERLQIV-NNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEE 66
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G++ I+ E WW+ ++L+T G P N + P+ Q ++
Sbjct: 13 YEARTEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEE 68
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
+E E L G+++ I+ + E WW +LST G P N + P
Sbjct: 11 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G+++ I+ + E WW +LST G P N + P Q ++
Sbjct: 94 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEE 149
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+E E L G+++ I+ + E WW +L+T G P N + P Q ++
Sbjct: 12 YESRTETDLSFKKGERLQIV-NNTEGDWWLAHSLTTGQTGYIPSNYVAPSDSIQAEE 67
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+ + +L I +GD++ I++ WW Q + + G+ P ++P+
Sbjct: 14 ESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 24 YEAITEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 9 YEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
+E E L G+++ I+ + E WW +L+T G P N + P
Sbjct: 16 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLTTGQTGYIPSNYVAP 63
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 14 YEARTEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSNYVAPV 62
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
+E E L G+++ I+ + E WW +L+T G P N + P
Sbjct: 16 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLTTGQTGYIPSNYVAP 63
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 13 YEARTEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSNYVAPV 61
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 10 YEARTEDDLSFHKGEKFQILNS-SEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 48 GDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD 90
G++ I+E P WW+ ++L+T G P N + P+ Q +
Sbjct: 28 GEKFQILEFGP-GDWWEARSLTTGETGYIPSNYVAPVDSIQGE 69
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
+E E L G+++ I+ + E WW +L+T G P N + P
Sbjct: 9 YESRTETDLSFKKGERLQIV-NNTEGDWWLAHSLTTGRTGYIPSNYVAP 56
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 10 YEARTEDDLSFHKGEKFQILNS-SEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 24 YEAWTEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 9 YEAITEDDLSFHKGEKFQILNS-SEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
E+ +L AGD++ + + E W +G+ L + +G++P N ++ +
Sbjct: 16 EQDELSFKAGDELTKLGEEDEQGWCRGR-LDSGQLGLYPANYVEAI 60
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86
E EE +L +G+ + +++ WW G+ + +G+FP N + PM R
Sbjct: 11 FEALEEDELGFRSGEVVEVLDSS-NPSWWTGRLHN--KLGLFPANYVAPMMR 59
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E E L G++ I+ E WW+ ++L+T G P N + P+
Sbjct: 10 YEAWTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 42 KLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82
+L + GD I I+ + WW+G+ IG FP N ++
Sbjct: 21 ELSLKEGDIIKILNKKGQQGWWRGEIYG--RIGWFPSNYVE 59
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86
E EE +L +G+ + +++ WW G+ + +G+FP N + PM R
Sbjct: 14 FEALEEDELGFRSGEVVEVLDSS-NPSWWTGRLHN--KLGLFPANYVAPMMR 62
>pdb|1VJG|A Chain A, Crystal Structure Of A Gdsl-like Lipase (alr1529) From
Nostoc Sp. Pcc 7120 At 2.01 A Resolution
Length = 218
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 19/58 (32%)
Query: 47 AGDQIVIIEGDPECHWW----------KGQNLSTFNIGMFPRNIMDPMRRKQPDDISR 94
GD V GDPEC W KG +++ +N+G +RR DI++
Sbjct: 26 VGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLG---------IRRDTSSDIAK 74
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 26.2 bits (56), Expect = 8.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 62 WWKGQNLSTFNIGMFPRNIMDPMRRK--QPDDISRPLRNSVI 101
WWK + T++I P+ P R K P ++S+P + +I
Sbjct: 63 WWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQELSKPKKYELI 104
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 26.2 bits (56), Expect = 8.9, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 106 GDPWGKSWGSPSHIDPMYLNNPMDPPDILGLTTQGSQNGGATVAHR 151
D G+ +G + + P+ + P+ P DI G ++ TVA R
Sbjct: 47 ADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAAR 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,525,562
Number of Sequences: 62578
Number of extensions: 242572
Number of successful extensions: 548
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 68
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)