Query psy2788
Match_columns 161
No_of_seqs 163 out of 497
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 16:52:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0199|consensus 99.9 1.1E-25 2.3E-30 209.0 10.6 133 4-140 353-490 (1039)
2 KOG2996|consensus 99.6 1.2E-15 2.6E-20 139.6 4.0 108 26-156 605-719 (865)
3 PF14604 SH3_9: Variant SH3 do 99.5 1.2E-14 2.5E-19 93.6 3.9 49 30-82 1-49 (49)
4 PF09027 GTPase_binding: GTPas 99.5 4.4E-15 9.6E-20 101.4 1.5 50 87-138 3-53 (66)
5 KOG2199|consensus 99.4 2.2E-14 4.8E-19 126.5 1.3 57 25-85 215-271 (462)
6 PF07653 SH3_2: Variant SH3 do 99.4 4E-13 8.6E-18 87.6 4.2 54 27-84 1-55 (55)
7 PF00018 SH3_1: SH3 domain; I 99.3 1.4E-12 3.1E-17 82.8 4.0 48 29-78 1-48 (48)
8 smart00326 SH3 Src homology 3 99.2 2E-11 4.4E-16 77.0 5.8 55 26-83 3-57 (58)
9 cd00174 SH3 Src homology 3 dom 99.2 7.1E-11 1.5E-15 73.8 5.6 53 28-83 2-54 (54)
10 KOG1029|consensus 99.1 3.5E-11 7.5E-16 113.3 4.1 56 26-85 1054-1109(1118)
11 KOG4792|consensus 99.1 1.6E-10 3.4E-15 96.5 4.8 59 26-87 125-183 (293)
12 KOG4226|consensus 99.0 6.7E-10 1.5E-14 94.9 6.2 59 26-86 192-251 (379)
13 KOG4226|consensus 99.0 4.2E-10 9.1E-15 96.1 4.9 54 24-83 108-161 (379)
14 KOG1118|consensus 99.0 3.4E-10 7.4E-15 97.6 4.2 57 25-85 306-362 (366)
15 KOG2070|consensus 99.0 2.5E-10 5.3E-15 103.5 3.5 58 24-85 16-73 (661)
16 KOG4225|consensus 99.0 4.1E-10 8.8E-15 100.6 3.7 58 25-84 432-489 (489)
17 KOG2856|consensus 98.9 2.8E-10 6.1E-15 100.1 1.0 57 26-84 415-471 (472)
18 KOG4225|consensus 98.8 3.5E-09 7.7E-14 94.7 5.6 56 27-86 232-287 (489)
19 KOG2996|consensus 98.8 2.7E-09 5.8E-14 98.6 3.8 55 27-84 807-862 (865)
20 KOG0162|consensus 98.8 6.1E-09 1.3E-13 98.1 4.1 55 26-84 1052-1106(1106)
21 KOG1843|consensus 98.7 5.9E-09 1.3E-13 92.7 3.1 56 25-83 416-472 (473)
22 KOG4348|consensus 98.7 3.7E-09 8E-14 95.0 0.6 57 26-86 101-157 (627)
23 KOG3601|consensus 98.7 1.3E-08 2.8E-13 83.8 2.7 56 26-85 164-219 (222)
24 KOG3655|consensus 98.6 2E-08 4.4E-13 90.4 2.7 57 24-83 426-482 (484)
25 KOG1029|consensus 98.3 6.2E-07 1.3E-11 85.2 4.7 56 26-85 906-962 (1118)
26 KOG1264|consensus 98.3 5E-07 1.1E-11 86.3 3.9 57 26-85 775-831 (1267)
27 KOG4278|consensus 98.3 1.1E-06 2.4E-11 82.9 5.9 96 22-154 87-184 (1157)
28 KOG2546|consensus 98.3 3.5E-07 7.6E-12 81.9 2.2 65 11-85 415-479 (483)
29 KOG4348|consensus 98.2 9.5E-07 2.1E-11 79.7 3.4 54 26-82 262-316 (627)
30 KOG3875|consensus 98.1 6.7E-07 1.5E-11 77.5 -0.6 60 26-86 269-332 (362)
31 KOG3523|consensus 97.9 2.1E-06 4.6E-11 79.7 0.2 76 5-85 590-666 (695)
32 KOG0515|consensus 97.9 6.1E-06 1.3E-10 76.1 3.1 59 26-87 684-744 (752)
33 KOG1702|consensus 97.8 1.5E-05 3.3E-10 66.0 2.9 55 26-82 208-262 (264)
34 KOG2528|consensus 97.8 1.6E-05 3.5E-10 71.7 2.9 58 27-86 4-61 (490)
35 KOG3775|consensus 97.7 1.4E-05 3E-10 71.1 2.0 56 28-85 265-320 (482)
36 KOG0197|consensus 97.6 5.2E-05 1.1E-09 69.0 4.1 58 26-85 12-70 (468)
37 KOG4575|consensus 97.4 0.00014 3E-09 68.3 4.5 58 23-82 6-63 (874)
38 KOG4429|consensus 97.1 0.0004 8.7E-09 60.4 3.6 72 1-83 343-417 (421)
39 KOG3771|consensus 97.1 0.00027 5.8E-09 64.1 2.3 54 26-82 401-454 (460)
40 KOG2222|consensus 96.8 0.00029 6.3E-09 64.9 -0.0 66 15-84 536-603 (848)
41 KOG1451|consensus 96.8 0.0012 2.7E-08 61.8 4.0 57 25-84 756-812 (812)
42 KOG3557|consensus 96.8 0.00068 1.5E-08 63.7 1.9 61 23-87 497-558 (721)
43 KOG0609|consensus 96.6 0.0011 2.4E-08 61.2 2.4 55 26-82 215-279 (542)
44 KOG3632|consensus 96.6 0.0023 5E-08 62.8 4.1 56 26-84 1139-1202(1335)
45 KOG4792|consensus 96.3 0.0051 1.1E-07 52.0 3.9 62 20-84 222-284 (293)
46 KOG4773|consensus 96.1 0.00061 1.3E-08 60.1 -2.6 54 27-84 177-230 (386)
47 KOG3632|consensus 94.7 0.019 4.1E-07 56.7 2.1 58 24-84 1243-1307(1335)
48 KOG3812|consensus 93.8 0.033 7.2E-07 49.6 1.7 52 27-79 60-118 (475)
49 KOG3565|consensus 93.3 0.03 6.5E-07 53.1 0.7 58 26-84 579-636 (640)
50 KOG3705|consensus 93.1 0.1 2.2E-06 47.6 3.6 54 27-82 511-564 (580)
51 PF11302 DUF3104: Protein of u 93.1 0.12 2.5E-06 36.4 3.2 28 40-67 1-33 (75)
52 KOG3725|consensus 92.6 0.059 1.3E-06 46.5 1.5 62 19-83 310-373 (375)
53 PF14603 hSH3: Helically-exten 91.5 0.16 3.5E-06 36.8 2.4 43 41-85 31-73 (89)
54 KOG3601|consensus 91.3 0.045 9.7E-07 45.6 -0.7 49 30-81 5-53 (222)
55 PF08239 SH3_3: Bacterial SH3 87.1 0.57 1.2E-05 29.4 2.3 39 43-82 17-55 (55)
56 smart00743 Agenet Tudor-like d 74.3 4 8.8E-05 26.3 2.9 24 44-68 2-25 (61)
57 PRK10884 SH3 domain-containing 67.9 5.2 0.00011 32.9 2.9 41 43-84 48-88 (206)
58 smart00287 SH3b Bacterial SH3 64.2 12 0.00027 23.6 3.6 37 43-81 25-61 (63)
59 COG3103 SH3 domain protein [Si 58.4 12 0.00025 31.0 3.3 39 43-82 48-86 (205)
60 PF07828 PA-IL: PA-IL-like pro 54.5 12 0.00027 28.5 2.6 26 42-67 17-47 (121)
61 PF15505 DUF4648: Domain of un 53.3 38 0.00083 27.1 5.2 50 28-79 1-50 (170)
62 KOG4384|consensus 52.0 8 0.00017 34.5 1.4 41 41-84 153-193 (361)
63 cd00173 SH2 Src homology 2 dom 49.3 6.5 0.00014 26.7 0.3 29 124-153 3-31 (94)
64 cd00132 CRIB PAK (p21 activate 47.0 16 0.00035 22.4 1.8 19 91-111 2-20 (42)
65 smart00252 SH2 Src homology 2 44.7 7.5 0.00016 26.1 0.1 29 124-153 4-32 (84)
66 KOG4257|consensus 43.9 14 0.0003 36.2 1.7 21 4-24 630-650 (974)
67 PF00786 PBD: P21-Rho-binding 42.1 3.5 7.7E-05 27.1 -1.8 21 91-113 1-21 (59)
68 PF14453 ThiS-like: ThiS-like 41.0 64 0.0014 21.4 4.1 38 17-56 19-56 (57)
69 KOG0169|consensus 40.3 16 0.00036 35.5 1.6 65 83-151 282-350 (746)
70 PF05774 Herpes_heli_pri: Herp 38.2 36 0.00077 26.2 2.9 47 71-120 36-86 (128)
71 PF05641 Agenet: Agenet domain 37.7 28 0.00061 23.1 2.1 23 45-67 1-25 (68)
72 KOG1095|consensus 36.9 18 0.00038 36.6 1.3 20 4-23 942-961 (1025)
73 COG0186 RpsQ Ribosomal protein 36.4 28 0.0006 25.1 1.9 19 41-59 52-70 (87)
74 KOG1314|consensus 36.3 24 0.00051 31.9 1.9 42 41-84 332-383 (414)
75 cd05108 PTKc_EGFR Catalytic do 35.3 21 0.00046 29.2 1.4 20 4-23 249-268 (316)
76 smart00739 KOW KOW (Kyprides, 33.9 41 0.0009 17.7 2.0 13 45-57 2-14 (28)
77 KOG0192|consensus 32.8 27 0.00058 30.9 1.7 20 4-23 284-303 (362)
78 smart00285 PBD P21-Rho-binding 32.3 21 0.00046 21.2 0.7 19 92-112 1-19 (36)
79 CHL00141 rpl24 ribosomal prote 32.1 37 0.00081 23.9 2.0 16 42-57 6-21 (83)
80 COG4871 Uncharacterized protei 31.3 50 0.0011 26.9 2.8 40 10-56 41-80 (193)
81 PRK05610 rpsQ 30S ribosomal pr 30.4 38 0.00082 24.1 1.8 16 44-59 53-68 (84)
82 PRK12281 rplX 50S ribosomal pr 29.9 44 0.00095 23.2 2.0 16 42-57 4-19 (76)
83 TIGR03635 S17_bact 30S ribosom 29.7 48 0.001 22.7 2.2 15 44-58 48-62 (71)
84 cd05110 PTKc_HER4 Catalytic do 29.4 32 0.0007 28.0 1.5 20 4-23 249-268 (303)
85 PF12736 CABIT: Cell-cycle sus 26.6 93 0.002 25.5 3.8 42 12-54 71-122 (256)
86 CHL00142 rps17 ribosomal prote 26.2 54 0.0012 23.3 2.0 16 44-59 50-65 (84)
87 cd00754 MoaD Ubiquitin domain 25.0 1.6E+02 0.0035 19.2 4.2 42 12-55 27-75 (80)
88 KOG0040|consensus 24.7 3.1 6.8E-05 43.6 -6.1 55 27-85 970-1024(2399)
89 cd05100 PTKc_FGFR3 Catalytic d 24.0 44 0.00096 27.6 1.4 20 4-23 274-293 (334)
90 cd05609 STKc_MAST Catalytic do 23.1 37 0.0008 27.6 0.8 19 4-22 255-273 (305)
91 PF06347 SH3_4: Bacterial SH3 22.9 1.3E+02 0.0028 18.7 3.1 36 42-81 18-53 (55)
92 PRK08572 rps17p 30S ribosomal 22.3 69 0.0015 23.9 2.0 20 39-58 72-91 (108)
93 PRK08053 sulfur carrier protei 22.2 1.5E+02 0.0032 19.3 3.5 16 41-56 47-62 (66)
94 PRK13914 invasion associated s 22.0 1.1E+02 0.0024 28.5 3.7 39 43-83 103-141 (481)
95 KOG4278|consensus 21.2 53 0.0012 32.5 1.5 18 5-22 505-522 (1157)
96 TIGR02657 amicyanin amicyanin. 20.9 84 0.0018 21.4 2.1 18 39-56 9-26 (83)
97 PF00017 SH2: SH2 domain; Int 20.0 43 0.00093 22.0 0.5 17 138-154 15-32 (77)
No 1
>KOG0199|consensus
Probab=99.93 E-value=1.1e-25 Score=209.00 Aligned_cols=133 Identities=29% Similarity=0.446 Sum_probs=122.9
Q ss_pred CCCCCCCCChhhhH--HHhhhcCCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCe
Q psy2788 4 TKNPAERPKFSTLK--DCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81 (161)
Q Consensus 4 ~~~P~~RP~F~~l~--~~L~~~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V 81 (161)
+|+|+|||||++|+ .+|.++.|..++++|| +.+++.|.|++||.|+|||++..++||+|||.||+++|.||++.|
T Consensus 353 ah~paDRptFsair~~~~l~eaqp~~a~~~~d---~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvv 429 (1039)
T KOG0199|consen 353 AHNPADRPTFSAIREDLVLAEAQPAVARETYD---SIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVV 429 (1039)
T ss_pred cCCccccccHHHHHHhHHHHhcCCceeeeecc---ccCCCceeeccCCeEEEEecCCccceeeccccccceecccCccee
Confidence 79999999999996 7889999999999999 889999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCccccccccccccCCCCCC--CCCCCCC-CCCCccccCCCCCCccccCCcccc
Q psy2788 82 DPMRRKQPDDISRPLRNSVIHTGHGDPW--GKSWGSP-SHIDPMYLNNPMDPPDILGLTTQG 140 (161)
Q Consensus 82 ~p~~~~~~~~IS~P~~~S~ihtghg~~~--g~~wG~p-~~idd~y~~~Pm~pp~~~~~~l~~ 140 (161)
. ...++...++.++..+++||||+... .++|+.+ ++++..|+.+|++|+|.+-++|..
T Consensus 430 t-~a~lga~pa~~~~t~~~vhtg~~~rg~~~h~~~~~~dr~~~nll~sppdrgd~rsm~l~g 490 (1039)
T KOG0199|consen 430 T-AATLGAVPAATAVTPQKVHTGPTIRGPPSHPPPAPLDRLNNNLLTSPPDRGDKRSMPLAG 490 (1039)
T ss_pred e-ecccCCCCccccCccccccCCCCCCCCCCCCCCCCcchhhhhcccCCCCccccccccccC
Confidence 8 66677888999999999999998773 5899999 899999999999999998888554
No 2
>KOG2996|consensus
Probab=99.57 E-value=1.2e-15 Score=139.64 Aligned_cols=108 Identities=25% Similarity=0.444 Sum_probs=90.1
Q ss_pred ceEEEecccCCCCCC-----CCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecCCCCCCCccccccccc
Q psy2788 26 AVMKATQNCHEIDEE-----GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRNSV 100 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~-----~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~~~~~~IS~P~~~S~ 100 (161)
+.|.+++.|+..+.| -.|.++.||++..+.+.+++.||.|+|..++++|+||++.|.|++.-..+.-+.|+..|.
T Consensus 605 pkm~~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~ 684 (865)
T KOG2996|consen 605 PKMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSE 684 (865)
T ss_pred cchhhhhccCCCCCCCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhh
Confidence 567788887766544 269999999999999999999999999999999999999999987433222244666665
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCCCCCCccccCCc--cccCCCCCeeEeeehhHHh
Q psy2788 101 IHTGHGDPWGKSWGSPSHIDPMYLNNPMDPPDILGLT--TQGSQNGGATVAHRSTERR 156 (161)
Q Consensus 101 ihtghg~~~g~~wG~p~~idd~y~~~Pm~pp~~~~~~--l~~~~ng~~~~~~r~~~~~ 156 (161)
+.| ++++||+ ++++ |.++.|||||||+|++|+.
T Consensus 685 ----------~~W----------yaG~MER---aqaes~Lk~~~ngT~LVR~r~kea~ 719 (865)
T KOG2996|consen 685 ----------FPW----------YAGEMER---AQAESTLKNRPNGTYLVRYRTKEAK 719 (865)
T ss_pred ----------hhh----------hcchHhh---hhhhhHhhcCCCceEEEEecccchh
Confidence 677 9999999 8888 9999999999999999875
No 3
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.51 E-value=1.2e-14 Score=93.61 Aligned_cols=49 Identities=33% Similarity=0.657 Sum_probs=41.6
Q ss_pred EecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCee
Q psy2788 30 ATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 30 Al~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
|+++ |.+.++++|+|++||+|.|++.. +.+||.|++ +++.|+||+|||+
T Consensus 1 Al~~-y~~~~~dELs~~~Gd~i~v~~~~-~~~W~~g~~--~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYD-YEAQDPDELSFKKGDVITVLEKS-DDGWWYGRN--TGRTGLFPANYVE 49 (49)
T ss_dssp ESSC-BCSSSTTB-EB-TTEEEEEEEES-STSEEEEEE--TTEEEEEEGGGEE
T ss_pred CCcc-CCCCCcCEeeEcCCCEEEEEEeC-CCCEEEEEE--CCEEEEECHHhCC
Confidence 6788 66788899999999999999865 468999997 8999999999996
No 4
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=99.50 E-value=4.4e-15 Score=101.44 Aligned_cols=50 Identities=50% Similarity=0.764 Sum_probs=12.9
Q ss_pred CCCCCccccccccccccCCCCCC-CCCCCCCCCCCccccCCCCCCccccCCcc
Q psy2788 87 KQPDDISRPLRNSVIHTGHGDPW-GKSWGSPSHIDPMYLNNPMDPPDILGLTT 138 (161)
Q Consensus 87 ~~~~~IS~P~~~S~ihtghg~~~-g~~wG~p~~idd~y~~~Pm~pp~~~~~~l 138 (161)
...++||.|+++||+|+|||+.. .+|||.++.||++||. |+||+++.+.+
T Consensus 3 ~aaqeIs~PLk~sFlH~Ghg~~~~k~~Wg~~~~idn~yl~--mdp~~~~~~~~ 53 (66)
T PF09027_consen 3 VAAQEISVPLKNSFLHTGHGMGNPKTCWGSPSEIDNNYLN--MDPIDMAYNLN 53 (66)
T ss_dssp SSSTT---S-SS------------SS---SS----TTT---------------
T ss_pred cchhhhcccccccccccCCcCCCCccccCChhhhhhhhhc--ccccchhhccc
Confidence 45789999999999999999995 6899999999999999 99999998863
No 5
>KOG2199|consensus
Probab=99.44 E-value=2.2e-14 Score=126.48 Aligned_cols=57 Identities=32% Similarity=0.642 Sum_probs=50.3
Q ss_pred CceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 25 PAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 25 P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
+..|||||| |++.|+++|+|++||||+|+|.. +.+||+|.+. +.+|+||+|||++.-
T Consensus 215 ~rkVRALYD-FeAaE~nELsFkaGdIItVLd~s-~~~WWKG~~~--~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 215 VRKVRALYD-FEAAEDNELSFKAGDIITVLDDS-DPNWWKGENH--RGIGLFPSNFVTADL 271 (462)
T ss_pred chhhhhhhc-ccccCCCccceecCcEEEEcccC-CcchhccccC--Ccccccchhhhhhhh
Confidence 478999999 88899999999999999999965 4689999985 468999999999754
No 6
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.38 E-value=4e-13 Score=87.62 Aligned_cols=54 Identities=26% Similarity=0.562 Sum_probs=44.7
Q ss_pred eEEEecccCCCCCCCCccccCCCEEEEE-ecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 27 VMKATQNCHEIDEEGKLYIDAGDQIVII-EGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 27 ~vrAl~d~~~~~e~~~L~f~~GDiI~Vi-d~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
.++|++| |....+++|+|++||+|.|+ +...+ .||.|++ +++.|+||+++|+++
T Consensus 1 ~~~a~~d-~~~~~~~~Ls~~~Gd~i~v~~~~~~~-~ww~~~~--~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFD-YVAEDPDELSFKKGDVIEVLGEKDDD-GWWLGEN--NGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSS-BESSSTTB-EB-TTEEEEEEEEECST-SEEEEEE--TTEEEEEEGGGEEEH
T ss_pred CEEEeEE-ECCCCCCceEEecCCEEEEEEeecCC-CEEEEEE--CCcEEEEcHHHEEEC
Confidence 3789999 66778899999999999999 65554 7999998 789999999999874
No 7
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.32 E-value=1.4e-12 Score=82.77 Aligned_cols=48 Identities=29% Similarity=0.542 Sum_probs=42.3
Q ss_pred EEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecC
Q psy2788 29 KATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPR 78 (161)
Q Consensus 29 rAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~ 78 (161)
+|+|+ |.+.++++|+|++||+|.|++...+ .||+|++..+++.|+||+
T Consensus 1 ~Alyd-f~~~~~~eLs~~~Gd~i~v~~~~~~-~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYD-FDAEDPDELSFKKGDIIEVLEKSDD-GWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSC-BETSSTTBSEB-TTEEEEEEEESSS-SEEEEEETTTTEEEEEEG
T ss_pred CCCee-eCCCCCCEEeEECCCEEEEEEecCC-CEEEEEECCCCcEEEeeC
Confidence 58999 6678899999999999999997764 899999998899999995
No 8
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.24 E-value=2e-11 Score=77.04 Aligned_cols=55 Identities=25% Similarity=0.518 Sum_probs=47.6
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeee
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
..++|+++ |....+++|+|++||+|.|++.. +.+||.+++.. ++.|+||.+||..
T Consensus 3 ~~~~a~~~-~~~~~~~~l~~~~Gd~v~v~~~~-~~~w~~~~~~~-~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYD-YTAQDPDELSFKKGDIITVLEKS-DDGWWKGRLGR-GKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeee-eCCCCCCCCCCCCCCEEEEEEcC-CCCeEEEEeCC-CCEEEEchHHEEE
Confidence 56789999 55677899999999999999976 46899999864 8999999999875
No 9
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.17 E-value=7.1e-11 Score=73.82 Aligned_cols=53 Identities=26% Similarity=0.614 Sum_probs=44.6
Q ss_pred EEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeee
Q psy2788 28 MKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 28 vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
++|+++ |....+++|+|++||+|.|++.. +.+||.+++..+ +.|+||.+||++
T Consensus 2 ~~a~~~-~~~~~~~~l~~~~Gd~v~v~~~~-~~~w~~~~~~~~-~~G~vP~~~v~~ 54 (54)
T cd00174 2 VRALYD-YDARDPDELSFKKGDIIEVLEKS-DDGWWEGRLLGG-KRGLFPSNYVEE 54 (54)
T ss_pred EEEEEe-eCCCCCCCCCCCCCCEEEEEEcC-CCCeEEEEECCC-CEEEEccccCcC
Confidence 578999 55677789999999999999974 357999998655 899999999863
No 10
>KOG1029|consensus
Probab=99.13 E-value=3.5e-11 Score=113.25 Aligned_cols=56 Identities=27% Similarity=0.545 Sum_probs=49.3
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
.+|.|+|| |.++.+|+|+|.+||+|.|+++. |..||+|. ++|+.|+||+|||.++.
T Consensus 1054 ~qviamYd-Y~AqndDELsF~kgdiI~Vlnkd-epeWW~Ge--~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1054 CQVIAMYD-YEAQNDDELSFKKGDIINVLNKD-EPEWWSGE--RNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred ceeEEeec-cccCCcccccccCCCEEEecCCC-Chhhhccc--ccCccccCccccccccc
Confidence 57889999 77899999999999999999965 56799998 46999999999998764
No 11
>KOG4792|consensus
Probab=99.06 E-value=1.6e-10 Score=96.47 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=50.9
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecCCC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRK 87 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~~ 87 (161)
.+|+|++| |...+..+|.|++|++++|+++. +.+||..+|. .|++|++|.+||+....-
T Consensus 125 ~~vr~~fd-F~G~deeDLPFkkGeiL~I~~K~-eeqWW~Arns-~Gk~GmIPvpYVe~~~~~ 183 (293)
T KOG4792|consen 125 EYVRALFD-FNGNDEEDLPFKKGEILRIRDKP-EEQWWNARNS-EGKRGMIPVPYVEKYRPA 183 (293)
T ss_pred hheeeeec-cCCCccccCCcccCcEEEEecCc-HHHhhhhhcc-CCcccceechHHHhhhhh
Confidence 57889999 65677889999999999999965 5689999995 799999999999976643
No 12
>KOG4226|consensus
Probab=98.99 E-value=6.7e-10 Score=94.91 Aligned_cols=59 Identities=22% Similarity=0.501 Sum_probs=49.5
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecC-CCCCceeeecCCCCccceecCCCeeecCC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGD-PECHWWKGQNLSTFNIGMFPRNIMDPMRR 86 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~-~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~ 86 (161)
..|+|||. |......+|+|++||++.|||+- .|.+||+.+|. .|++|+.|+|||..+..
T Consensus 192 ~vVvaLYs-FsssndeELsFeKGerleivd~Pe~DPdWwkarn~-~G~vGLVPrNYv~vl~d 251 (379)
T KOG4226|consen 192 HVVVALYS-FSSSNDEELSFEKGERLEIVDKPENDPDWWKARNA-RGQVGLVPRNYVVVLSD 251 (379)
T ss_pred EEEEEEec-ccCCChhhcccccCceeEeccCCCCCchHHhhccc-CCccceeecceEEEecc
Confidence 56789998 65566679999999999999963 35679999996 68999999999997653
No 13
>KOG4226|consensus
Probab=98.99 E-value=4.2e-10 Score=96.15 Aligned_cols=54 Identities=30% Similarity=0.667 Sum_probs=45.6
Q ss_pred CCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeee
Q psy2788 24 TPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 24 ~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
.|..|+-.|. ++.+++|+|.+|+.|+|+|+..| +||+|+- +|++||||+|||+.
T Consensus 108 t~AvVKf~Y~---a~~eDELsLtKGtrv~vmEKssD-GWWrG~~--ng~VGWFPSNYv~E 161 (379)
T KOG4226|consen 108 TPAVVKFNYV---AEREDELSLTKGTRVTVMEKSSD-GWWRGSY--NGQVGWFPSNYVTE 161 (379)
T ss_pred CceEEEEeec---cccccccccccCcEEEEEEeccC-cceeccc--CCeeccccccceeh
Confidence 3555554444 78889999999999999999987 6999995 79999999999974
No 14
>KOG1118|consensus
Probab=98.99 E-value=3.4e-10 Score=97.60 Aligned_cols=57 Identities=26% Similarity=0.490 Sum_probs=50.1
Q ss_pred CceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 25 PAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 25 P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
-+.+||+|| |+.+..++|.|++||+|+|+.... .+||.|.. .|+.|+||.|||+++.
T Consensus 306 ~p~cralYd-FepenEgEL~fkeGDlI~l~~QId-enWyeG~~--~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 306 QPCCRALYD-FEPENEGELDFKEGDLITLTNQID-ENWYEGEK--HGESGMFPVNYVEVLV 362 (366)
T ss_pred chhheeeec-cCCCCCCccCcccCceeeehhhcC-cchhhhee--cCccCccccceeEEec
Confidence 478999999 777778999999999999999665 58999984 6789999999999875
No 15
>KOG2070|consensus
Probab=98.99 E-value=2.5e-10 Score=103.52 Aligned_cols=58 Identities=28% Similarity=0.559 Sum_probs=49.3
Q ss_pred CCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 24 TPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 24 ~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
.|-.|||-+. |.....|+|+|.+||+|+|.... |++||.|.. +|++||||+|||.-+.
T Consensus 16 ~pLvvrAkf~-F~gsNnDELsf~KgDvItVTq~e-eGGWWEGTl--ng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 16 NPLVVRAKFN-FQGSNNDELSFSKGDVITVTQVE-EGGWWEGTL--NGRTGWFPSNYVREIK 73 (661)
T ss_pred CceEEEEEee-cccCCCceeccccCCEEEEEEec-cCcceeccc--cCccCccchHHHHHHh
Confidence 4788999998 65667789999999999999854 678999985 6889999999998653
No 16
>KOG4225|consensus
Probab=98.96 E-value=4.1e-10 Score=100.60 Aligned_cols=58 Identities=26% Similarity=0.441 Sum_probs=52.4
Q ss_pred CceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 25 PAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 25 P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
|-.+||||. |..+.+++|+|+.||||-|+++..| .|.-|...|||++|.||.|||+++
T Consensus 432 ~l~yrAly~-Y~pqnedeLEl~egDii~VmeKcdd-gWfvGts~rtg~fGtFPgnyV~~~ 489 (489)
T KOG4225|consen 432 PLKYRALYS-YRPQNEDELELREGDIIDVMEKCDD-GWFVGTSRRTGKFGTFPGNYVKRL 489 (489)
T ss_pred cccceeccc-cCCCCchhheeccCCEEeeeecccC-cceeccceecccccccCccccccC
Confidence 456899998 7788999999999999999999876 699998889999999999999864
No 17
>KOG2856|consensus
Probab=98.91 E-value=2.8e-10 Score=100.11 Aligned_cols=57 Identities=25% Similarity=0.428 Sum_probs=51.3
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
.-|+|||| |...|.++|+|++||.|++++...+.+|-+|+.. +|++|+||+|||+.+
T Consensus 415 v~vraLYD-Y~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~-~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYD-YAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLD-SGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeec-cCcccccchhhccccHhhhcCCcccccccccccc-CCcccccchhhhhcc
Confidence 56889999 7778899999999999999998888999999974 799999999999864
No 18
>KOG4225|consensus
Probab=98.85 E-value=3.5e-09 Score=94.67 Aligned_cols=56 Identities=20% Similarity=0.444 Sum_probs=49.0
Q ss_pred eEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecCC
Q psy2788 27 VMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86 (161)
Q Consensus 27 ~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~ 86 (161)
.++|+|+ |+.+.+.+|.|.+||||.|+.+.. .+|..|. .+|++|+||+|||+++..
T Consensus 232 ~aralf~-F~~qt~kEL~~~kGDIVyI~rkvD-~nWyeGE--hhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFD-FEAQTPKELPFNKGDIVYILRKVD-QNWYEGE--HHGRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheec-cccCCccccccCCCCEEEEEeecc-Cceeeee--ecceecceechheeecCc
Confidence 3689999 778888999999999999999765 5899998 479999999999998764
No 19
>KOG2996|consensus
Probab=98.82 E-value=2.7e-09 Score=98.55 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.6
Q ss_pred eEEEecccCCCCCCCCccccCCCEEEEEecCCC-CCceeeecCCCCccceecCCCeeec
Q psy2788 27 VMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPE-CHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 27 ~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e-~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
.+.|-|| |.+.+-.+|+|++||+|.|+++..+ .+||+|+. +|++||||++||++-
T Consensus 807 ~AvarYd-f~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev--ngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 807 TAVARYD-FCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV--NGRVGWFPSTYVEED 862 (865)
T ss_pred eeeeccc-cCCCchhhcccccCCEEEEehhccccCceeccee--cCccccccccccccc
Confidence 3456666 4455556899999999999997654 89999995 689999999999974
No 20
>KOG0162|consensus
Probab=98.75 E-value=6.1e-09 Score=98.11 Aligned_cols=55 Identities=29% Similarity=0.516 Sum_probs=48.8
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
+.+.|+|+ |..+++++|+|++||+|.|+...+ ++||.|+. .++.||||.|||+++
T Consensus 1052 p~~~A~Y~-y~gq~~dEls~~~~diIei~~edp-SGWw~gk~--~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYD-YPGQDVDELSFKKGDIIEIMREDP-SGWWLGKL--NGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeecc-CCCCCcccccccCCCEEEEeccCC-Ccchhhcc--CCccccccccccccC
Confidence 56889999 667888999999999999999887 57999994 689999999999863
No 21
>KOG1843|consensus
Probab=98.73 E-value=5.9e-09 Score=92.68 Aligned_cols=56 Identities=27% Similarity=0.554 Sum_probs=49.2
Q ss_pred CceEEEecccCCCCCCCCccccCCCEEEEEecCC-CCCceeeecCCCCccceecCCCeee
Q psy2788 25 PAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDP-ECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 25 P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~-e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
|.++.|+|+ |..+++++|.|++||||+|+++.. ..+||.|+. .++.|+||+|||++
T Consensus 416 ~n~a~a~ys-fage~~GDl~f~kgDii~il~ks~s~~dwwtgr~--~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYS-FAGEQPGDLSFQKGDIITILKKSDSANDWWTGRG--NGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeeh-hccCCCCCcccccCceEEEecCCcchhhHHHhhc--cccccccccceecc
Confidence 568999998 777899999999999999999753 478999984 68999999999976
No 22
>KOG4348|consensus
Probab=98.69 E-value=3.7e-09 Score=94.96 Aligned_cols=57 Identities=28% Similarity=0.520 Sum_probs=47.2
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecCC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~ 86 (161)
..++++|. |..+..++|+|++||+|.|+..- |.+||+|.. +|++|+||+|+|+-...
T Consensus 101 r~c~v~f~-Y~pqndDELelkVGDiIeli~eV-EeGWw~G~L--ngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 101 RICVVTFA-YSPQNDDELELKVGDIIELISEV-EEGWWKGKL--NGKVGMFPSNFVKELPT 157 (627)
T ss_pred eeEEEEEe-ecCCCCceeeeeeccHHHhhhHh-hhhhhhcee--cCcccccchhhceecCC
Confidence 45678887 54677899999999999999854 568999996 58999999999986543
No 23
>KOG3601|consensus
Probab=98.65 E-value=1.3e-08 Score=83.77 Aligned_cols=56 Identities=23% Similarity=0.494 Sum_probs=48.7
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
..++|+|| |+..++++|.|+.||+|+|++... ..||+|+. -|+.|+||++||.|+.
T Consensus 164 ~yqQa~~d-f~~~pp~ql~f~~gq~~~v~~~ss-~~ww~Gs~--lg~agiFpagyv~p~d 219 (222)
T KOG3601|consen 164 YYQQALYD-FQPQPPGQLAFRRGQQIQVLDSSS-PFWWFGSK--LGRAGIFPAGYVAPSD 219 (222)
T ss_pred hhhhhcCC-CCCCCchhhccccCCcceeecCCC-cchhhccc--cCceeeecCccccccc
Confidence 46789999 777788999999999999999754 68999994 6889999999999874
No 24
>KOG3655|consensus
Probab=98.60 E-value=2e-08 Score=90.43 Aligned_cols=57 Identities=25% Similarity=0.556 Sum_probs=49.8
Q ss_pred CCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeee
Q psy2788 24 TPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 24 ~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
-|..++|+|| |++.+..+++|..+|+|++||.-+ .+||.|+- ..|++|+||+|||+-
T Consensus 426 ~~q~A~A~~d-yqAAddtEisf~p~d~it~Id~vd-egww~g~~-pdG~~glfPaNyV~l 482 (484)
T KOG3655|consen 426 EPQTARALYD-YQAADDTEISFDPPDAITLIDQVD-EGWWTGQG-PDGEVGLFPANYVEL 482 (484)
T ss_pred cCCCcccccc-ccccCCcccccCCccccccccccC-CccccccC-CCCCcCccccccccc
Confidence 4677889999 767788899999999999999766 58999997 578999999999974
No 25
>KOG1029|consensus
Probab=98.31 E-value=6.2e-07 Score=85.16 Aligned_cols=56 Identities=32% Similarity=0.608 Sum_probs=47.8
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCC-CeeecC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN-IMDPMR 85 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n-~V~p~~ 85 (161)
+++-|+|.|+++.|+++|.|..||.|.|+++.. .||.|. ++++.|+||+| ||.|+.
T Consensus 906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtekdg--eww~gt--~~~r~gifPan~y~r~~~ 962 (1118)
T KOG1029|consen 906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEKDG--EWWTGT--CGDREGIFPANYYVRPKD 962 (1118)
T ss_pred ceeEEEecccccccCCCccccccceEEEeeccC--ceeccc--cCCccccccccceeeehh
Confidence 567788888888899999999999999999875 499998 47889999999 666654
No 26
>KOG1264|consensus
Probab=98.30 E-value=5e-07 Score=86.31 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=49.1
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
..++|||+ |.+..+++|+|-+|-+|+++++.. +.||+|.-+ +...++||+|||+.+.
T Consensus 775 vt~kAL~~-Yka~r~DELSFpk~aiItnv~kee-g~wWrGdYG-g~iq~wfPsnyVeei~ 831 (1267)
T KOG1264|consen 775 VTVKALYD-YKAKRSDELSFPKGAIITNVSKEE-GGWWRGDYG-GRIQQWFPSNYVEEIS 831 (1267)
T ss_pred hhhhhhhc-cccCCcccccccccceeEeeeccC-Cceeecccc-cceeeeccHHHhhhhc
Confidence 56789999 668889999999999999999775 679999864 4567999999999775
No 27
>KOG4278|consensus
Probab=98.29 E-value=1.1e-06 Score=82.87 Aligned_cols=96 Identities=18% Similarity=0.354 Sum_probs=75.6
Q ss_pred hcCCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecCCCCCCCcccccccccc
Q psy2788 22 RLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRNSVI 101 (161)
Q Consensus 22 ~~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~~~~~~IS~P~~~S~i 101 (161)
++.|....|||| |-+..++.|++.+||.+-|+-..-.+.|-..|. .+|+ ||.|+||++|+. |+
T Consensus 87 endpNLFVALYD-FvasGdntLSitKGeklRvLGYN~NgEWcEart-KNGq-GWVPSNyItPvN-------------SL- 149 (1157)
T KOG4278|consen 87 ENDPNLFVALYD-FVASGDNTLSITKGEKLRVLGYNKNGEWCEART-KNGQ-GWVPSNYITPVN-------------SL- 149 (1157)
T ss_pred cCCCceeEeeee-eeccccceeeeecCceEEEeeecCCCcceeecc-cCCC-cccccccccccc-------------ch-
Confidence 456888899999 435666789999999999998665556888886 5788 999999999984 22
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCCCCCccccCCc--cccCCCCCeeEeeehhH
Q psy2788 102 HTGHGDPWGKSWGSPSHIDPMYLNNPMDPPDILGLT--TQGSQNGGATVAHRSTE 154 (161)
Q Consensus 102 htghg~~~g~~wG~p~~idd~y~~~Pm~pp~~~~~~--l~~~~ng~~~~~~r~~~ 154 (161)
...+| +.+|+.+ -.++ |++--||.||||+-++.
T Consensus 150 -------eKhsW----------YHGpvSR---saaEy~LsSgInGSFLVRESEsS 184 (1157)
T KOG4278|consen 150 -------EKHSW----------YHGPVSR---SAAEYILSSGINGSFLVRESESS 184 (1157)
T ss_pred -------hhccc----------ccCcccc---chhhhhhhcCcccceEEeeccCC
Confidence 23678 8899987 4444 99999999999876543
No 28
>KOG2546|consensus
Probab=98.27 E-value=3.5e-07 Score=81.85 Aligned_cols=65 Identities=20% Similarity=0.488 Sum_probs=52.3
Q ss_pred CChhhhHHHhhhcCCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 11 PKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 11 P~F~~l~~~L~~~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
|.|+ =+.+| +.|+|+|| |.....++|+|..|-+|.|+.+. +.+||.|.. .+-.|+||.|||+|+.
T Consensus 415 p~w~-p~syL-----EkVv~iyd-y~~~KddeLsf~E~ailyv~kkn-ddgw~EgV~--~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 415 PAWV-PTSYL-----EKVVAIYD-YTADKDDELSFAEGAILYVLKKN-DDGWYEGVQ--DGVTGLFPGNYVEPLK 479 (483)
T ss_pred cccc-cHHHH-----HHHHhhcc-cccccccccccccccEEEEEEec-CCcchhhee--cCcceeccCccccccc
Confidence 5554 23455 67899999 44778899999999999999974 568999974 5668999999999975
No 29
>KOG4348|consensus
Probab=98.21 E-value=9.5e-07 Score=79.72 Aligned_cols=54 Identities=22% Similarity=0.556 Sum_probs=46.2
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecC-CCCCceeeecCCCCccceecCCCee
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGD-PECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~-~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
+++|.++. |+.+..++|.|+.||+|+.|.+. .|.+||.|.. +|+.|+||-|+|+
T Consensus 262 eycrv~F~-Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL--nGk~GvFPDNFv~ 316 (627)
T KOG4348|consen 262 EYCRVKFV-YEPQNDDELTLKEGDILILITKNCGDAGWWEGEL--NGKKGVFPDNFVE 316 (627)
T ss_pred hheeeeee-ecCCCccceeeccccEEEEecccccccceeeeee--cCccccCCchhhh
Confidence 45677776 77888899999999999999753 5688999995 6899999999996
No 30
>KOG3875|consensus
Probab=98.06 E-value=6.7e-07 Score=77.52 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=49.6
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecC----CCCCceeeecCCCCccceecCCCeeecCC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGD----PECHWWKGQNLSTFNIGMFPRNIMDPMRR 86 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~----~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~ 86 (161)
..+||+|| |-+..|.||+|++||++.|.-+. ....||..+....+.+|+||.|||+-+.+
T Consensus 269 ~~arA~Yd-F~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYD-FVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhh-hhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 56789999 65677789999999999999643 23559999976589999999999997765
No 31
>KOG3523|consensus
Probab=97.93 E-value=2.1e-06 Score=79.68 Aligned_cols=76 Identities=14% Similarity=0.358 Sum_probs=58.9
Q ss_pred CCCCCCCChhh-hHHHhhhcCCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeee
Q psy2788 5 KNPAERPKFST-LKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 5 ~~P~~RP~F~~-l~~~L~~~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
.-|..++++.+ |.+.. -=++|+++.. |.+.++|+|+|+.+|++-|+.+.+| +|.+|...+.|..||||..||+-
T Consensus 590 l~p~~~~~~~~~i~e~~---dcpQv~~~~s-y~a~q~Del~Le~~Dvv~v~~k~~D-GWl~GeRl~Dge~GWFP~~~vee 664 (695)
T KOG3523|consen 590 LRPPSSTKPPEKIYEEW---DCPQVQCVHS-YKAKQPDELTLELADVVNVLQKTPD-GWLEGERLRDGERGWFPSSYVEE 664 (695)
T ss_pred cCCCCCCCChhhhhhcc---CCChhheeec-cccCCCceeeeehhhhhhhhhcCCC-ccccccccccCccCcchHHHHHH
Confidence 34555555554 22211 1267778887 6588999999999999999999987 69999988999999999999986
Q ss_pred cC
Q psy2788 84 MR 85 (161)
Q Consensus 84 ~~ 85 (161)
+.
T Consensus 665 I~ 666 (695)
T KOG3523|consen 665 IT 666 (695)
T ss_pred hc
Confidence 53
No 32
>KOG0515|consensus
Probab=97.93 E-value=6.1e-06 Score=76.11 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=49.6
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecC--CCCCceeeecCCCCccceecCCCeeecCCC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGD--PECHWWKGQNLSTFNIGMFPRNIMDPMRRK 87 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~--~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~~ 87 (161)
-.|-|++| |+++-.|+|+|+.||.+|||+.. .|..||-.++ +++.|+.|+||+.-++++
T Consensus 684 G~vYAlwd-Yeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~l--ng~eGyVPRnylgLyPri 744 (752)
T KOG0515|consen 684 GVVYALWD-YEAQFEDELSFDEGDELTVIRRDDEVETEWWWARL--NGEEGYVPRNYLGLYPRI 744 (752)
T ss_pred ceeEEeec-ccccccccccccCCceeEEEecCCcchhhhhhHhh--cCcccccchhhhhcCccc
Confidence 56779999 77777899999999999999863 3578999995 689999999999877643
No 33
>KOG1702|consensus
Probab=97.79 E-value=1.5e-05 Score=65.97 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=47.6
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCee
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
...+|+|| |.+++.++++|+-||.|.-+....+ +|-.|...+||..|+.|+|||+
T Consensus 208 ktyra~yd-ysaqdedevsF~dgd~ivnvq~idd-GWmygtv~rtg~tGmlpaNyie 262 (264)
T KOG1702|consen 208 KTYRAFYD-YSAQDEDEVSFVDGDYIVNVQSIDD-GWMYGTVVRTGWTGMLPANYIE 262 (264)
T ss_pred ccchhhcc-CcccCcceeEEecCCeEEEEEeccC-CceeeEEEeccccCCCchhhee
Confidence 56789999 6577889999999999988876655 5999988899999999999987
No 34
>KOG2528|consensus
Probab=97.76 E-value=1.6e-05 Score=71.67 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=47.6
Q ss_pred eEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecCC
Q psy2788 27 VMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86 (161)
Q Consensus 27 ~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~ 86 (161)
.+||+|| |..+-.++|++..||++.|.....-..||.|+|. .|..|+||++||+.++.
T Consensus 4 k~RamyD-f~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Ns-rge~GlfPa~yVeV~~~ 61 (490)
T KOG2528|consen 4 KARAMYD-FQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNS-RGERGLFPASYVEVTRL 61 (490)
T ss_pred chhhhcc-hhhcccccccccccceeeecCcccccccccCCCc-cCccCCCcccceeeecc
Confidence 5688898 4334457999999999999987766789999996 68999999999996653
No 35
>KOG3775|consensus
Probab=97.74 E-value=1.4e-05 Score=71.09 Aligned_cols=56 Identities=23% Similarity=0.451 Sum_probs=46.3
Q ss_pred EEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 28 MKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 28 vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
-||+.. |-...+++|.|+.||-|.| +...|..|..|.|.|||+.|+||+.|+.-+.
T Consensus 265 HR~~~r-FvPRHpDELeLEIgDav~V-e~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 265 HRAVFR-FVPRHPDELELEIGDAVLV-EAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhhhhh-ccCCCcceeeeecCCeeEe-eecccchhhccccccccccccccceeEEecC
Confidence 357776 4357889999999999855 5567778999999999999999999987654
No 36
>KOG0197|consensus
Probab=97.63 E-value=5.2e-05 Score=69.02 Aligned_cols=58 Identities=21% Similarity=0.445 Sum_probs=48.3
Q ss_pred ceEEEecccCCCCCCCCccccCCCE-EEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQ-IVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDi-I~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
..+.|+++ |....+.+|+|.+||+ -.|++ ..+..||+.+...++..|+.|.|||....
T Consensus 12 ~~~valyd-~~s~~~~dLsf~~Gd~~~~~~~-~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~ 70 (468)
T KOG0197|consen 12 TIVVALYD-YASRTPEDLSFRKGDVVLILLE-TTNGDWWRARSLQLGQEGYIPSNYVARNR 70 (468)
T ss_pred ceEEEecc-ccCCCccccccccCceEEEeec-cCChhHHHHHHhhcCCCCcCcCceeeccc
Confidence 57889999 6677789999999999 55555 44568999998778999999999999864
No 37
>KOG4575|consensus
Probab=97.45 E-value=0.00014 Score=68.33 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=45.4
Q ss_pred cCCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCee
Q psy2788 23 LTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 23 ~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
..|..|+|+|. ...+..++|.|-.||+|+++. ..++-||-+....+...|+||.|+|.
T Consensus 6 q~p~~vrA~y~-w~ge~eGdl~f~egDlie~tr-I~dgkwwi~lhrNk~~~g~fpsNFvh 63 (874)
T KOG4575|consen 6 QLPCMVRALYA-WPGEREGDLKFTEGDLIEQTR-IEDGKWWILLHRNKDEDGLFPSNFVH 63 (874)
T ss_pred CCCceEEeecc-CCCCcccccceecccceeEEe-eccceeeeeeeecccccccCccccee
Confidence 45788999997 656777999999999999998 44455666654336778999999994
No 38
>KOG4429|consensus
Probab=97.14 E-value=0.0004 Score=60.44 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=54.5
Q ss_pred CCCCCCCCC-C--CChhhhHHHhhhcCCceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceec
Q psy2788 1 MKATKNPAE-R--PKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFP 77 (161)
Q Consensus 1 ~~~~~~P~~-R--P~F~~l~~~L~~~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP 77 (161)
|.|+.+|-- | |-.+++...|-+ |+|. |.+.+.++|....||++++-+... ..||.|+. .++.|-||
T Consensus 343 m~aqsapgSpr~a~~aaelek~lcd-------afYS-fqarqddel~~e~gditif~Ekke-eg~~f~rl--~gd~~hf~ 411 (421)
T KOG4429|consen 343 MEAQSAPGSPRGAGEAAELEKILCD-------AFYS-FQARQDDELGGEIGDITIFDEKKE-EGPTFCRL--LGDFEHFH 411 (421)
T ss_pred ccccCCCCCCCCCccHHHHHHHHhh-------hhhc-cccccccccCCcccceeeecCccc-CCCceeee--ccccCCCc
Confidence 345555433 4 446667776655 7887 667788999999999988877664 57999996 58999999
Q ss_pred CCCeee
Q psy2788 78 RNIMDP 83 (161)
Q Consensus 78 ~n~V~p 83 (161)
+.||+.
T Consensus 412 Aa~iEe 417 (421)
T KOG4429|consen 412 AAEIEE 417 (421)
T ss_pred HHHHHH
Confidence 999874
No 39
>KOG3771|consensus
Probab=97.11 E-value=0.00027 Score=64.08 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=44.5
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCee
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
..|.|++| |.+.+.++|+|+.||+|.||.......||.|.. .|..+-||.+||.
T Consensus 401 ~~v~a~~d-y~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~--mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 401 YKVKALHD-YAAQDTDELSFEAGDVILVIPSDNPEEQDEGWL--MGVKESDWNGLFP 454 (460)
T ss_pred cceecccc-ccccccccccccCCCEEEEecCCCccchhhHHH--hhhccccccccee
Confidence 56889999 778888999999999999999666678999984 5666777766654
No 40
>KOG2222|consensus
Probab=96.82 E-value=0.00029 Score=64.88 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=50.9
Q ss_pred hhHHHhhhcCC--ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 15 TLKDCLYRLTP--AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 15 ~l~~~L~~~~P--~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
++..++..++. ..++|+-| |.-.+.++|.|+++|+|+||....| .-|-|.. +|--||||+-+|+-+
T Consensus 536 d~~nfik~~r~~~krakal~d-f~r~dddelgfrkndiitiisekde-hcwvgel--nglrgwfpakfvell 603 (848)
T KOG2222|consen 536 DHANFIKGARTGAKRAKALHD-FAREDDDELGFRKNDIITIISEKDE-HCWVGEL--NGLRGWFPAKFVELL 603 (848)
T ss_pred hHHHHhhhhhhhhHHHHHHhh-hhhccccccccccccEEEEeecCCc-ceeeecc--ccccccchHHHHHHH
Confidence 45667766654 45678888 5456778999999999999986654 5789985 567799999999853
No 41
>KOG1451|consensus
Probab=96.81 E-value=0.0012 Score=61.82 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=48.7
Q ss_pred CceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 25 PAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 25 P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
++.++++|+ +.+.++.+|.|..|.+++-+-.+.+.+|-.|.. +|+.|++|.|||+|+
T Consensus 756 ~rk~k~lyA-c~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL--nGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYA-CTADHHSELSFEPGTIFTNVYESNEDGWLVGTL--NGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceec-cCCCCcccccccCcceeeeecccCCCCceeeec--CCCcccCcccccCcC
Confidence 477889998 447788899999999998777677788999995 689999999999974
No 42
>KOG3557|consensus
Probab=96.76 E-value=0.00068 Score=63.72 Aligned_cols=61 Identities=18% Similarity=0.422 Sum_probs=51.6
Q ss_pred cCCc-eEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecCCC
Q psy2788 23 LTPA-VMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRK 87 (161)
Q Consensus 23 ~~P~-~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~~~ 87 (161)
+++. +++.+|| |.+....+|+..+||+++|++.. -.||+.+|. .|+.|+.|.|.+++++..
T Consensus 497 a~~~k~~~~~Yd-f~arNs~ELsV~k~E~LEvl~d~--R~WW~~kn~-~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 497 AQGKKWVLVLYD-FQARNSSELSVKKGEVLEVLDDG--RKWWKVKNG-HGRAGYVPSNILAPLQPE 558 (721)
T ss_pred cccceeeeeehh-hhcccchhhhhhhhhhhhhhhcc--ccceeccCc-cCCCCCcchhhhccCCCc
Confidence 4455 7889999 76777889999999999999965 469999995 799999999999988643
No 43
>KOG0609|consensus
Probab=96.65 E-value=0.0011 Score=61.18 Aligned_cols=55 Identities=20% Similarity=0.473 Sum_probs=41.2
Q ss_pred ceEEEecccCCCCCC-------CCccccCCCEEEEEecCCCCCceeeecCC---CCccceecCCCee
Q psy2788 26 AVMKATQNCHEIDEE-------GKLYIDAGDQIVIIEGDPECHWWKGQNLS---TFNIGMFPRNIMD 82 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~-------~~L~f~~GDiI~Vid~~~e~~WW~Gqn~r---tg~~G~FP~n~V~ 82 (161)
..|||++| |+..++ ..|.|++|||+.|+.+. |.+||+++... .+.-|++|++...
T Consensus 215 ~~vra~Fd-YdP~~D~~IPCkEagl~F~~GDILqIv~qd-D~nWWQA~~~~~~~~~~AGLiPS~~~q 279 (542)
T KOG0609|consen 215 VFVRALFD-YDPKEDDLIPCKEAGLPFQRGDILQIVSQD-DPNWWQARRVGDPFGGLAGLIPSKELQ 279 (542)
T ss_pred eeehhhcC-cCcccCCcccchhcCCcccccceeeeccCC-CcchhhhhcccCccccccccccCHHHH
Confidence 35789999 545433 25999999999999965 57899998543 3567999987653
No 44
>KOG3632|consensus
Probab=96.56 E-value=0.0023 Score=62.79 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=44.3
Q ss_pred ceEEEecccCCCC--------CCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 26 AVMKATQNCHEID--------EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 26 ~~vrAl~d~~~~~--------e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
..+.|++|| +.- ...+|.|++||||.|+-.....+++.|.. +++.|++|+|.|.++
T Consensus 1139 rifVAlfDY-Dpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~--ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1139 RIFVALFDY-DPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL--NGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred eeeEeeecc-CccccCCCCChhhhccccccCcEEEEeccccccceeeccc--ccccccccccccccc
Confidence 567899994 331 12479999999999996665568999984 689999999999864
No 45
>KOG4792|consensus
Probab=96.26 E-value=0.0051 Score=51.98 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=46.8
Q ss_pred hhhcCCceEEEeccc-CCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 20 LYRLTPAVMKATQNC-HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 20 L~~~~P~~vrAl~d~-~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
|....|.+++++++- -++=+.-.|.+++||+|-|..... +.-|+|.. +|++|.||-.+|.=.
T Consensus 222 l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ni-nGqwegEl--nGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 222 LQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNI-NGQWEGEL--NGKIGHFPFTHVRFT 284 (293)
T ss_pred cccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeecc-Cceeeeee--cCccccccceeEEee
Confidence 445568888888871 111134579999999999998655 46899984 799999999998754
No 46
>KOG4773|consensus
Probab=96.06 E-value=0.00061 Score=60.11 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=42.5
Q ss_pred eEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 27 VMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 27 ~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
..+|+.| |......+|.|.+||+|.++... +.+||.|+. -+..|+||.+||.++
T Consensus 177 ~~~a~~d-f~gns~~EL~l~agdV~~~~~r~-ek~W~~gk~--R~~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 177 RAEASFD-FPGNSKLELNLVAGDVEFLLSRD-EKYWLLGKV--RGLTGYYPDSFVKQL 230 (386)
T ss_pred HHHhhcc-CCCCccceeeeehhhHHHHHhhc-ccceeeeee--ccccccccHHhhhhh
Confidence 3456777 43445579999999999999855 579999985 367799999999865
No 47
>KOG3632|consensus
Probab=94.65 E-value=0.019 Score=56.71 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=47.3
Q ss_pred CCceEEEecccCCCCCC-------CCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 24 TPAVMKATQNCHEIDEE-------GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 24 ~P~~vrAl~d~~~~~e~-------~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
.|..|.|.+| |...+. .+|.|..||||+|..+..+..+..|.. +|+.|+.|+|+++-.
T Consensus 1243 ~p~~mvaa~d-ydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGel--ngqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1243 PPRQMVAASD-YDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGEL--NGQKGLVPSNFLEAP 1307 (1335)
T ss_pred chhhhhhhhc-CCcccCCCCcccceeeccccCCeEEeeccccCCccccccc--CCccCccccccccCC
Confidence 3568889999 545432 379999999999999998889999984 688899999987643
No 48
>KOG3812|consensus
Probab=93.76 E-value=0.033 Score=49.61 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=39.0
Q ss_pred eEEEecccCCCCCC------CCccccCCCEEEEEecCCCCCceeeecCC-CCccceecCC
Q psy2788 27 VMKATQNCHEIDEE------GKLYIDAGDQIVIIEGDPECHWWKGQNLS-TFNIGMFPRN 79 (161)
Q Consensus 27 ~vrAl~d~~~~~e~------~~L~f~~GDiI~Vid~~~e~~WW~Gqn~r-tg~~G~FP~n 79 (161)
.|++..+|.+.-+. ..++|+..|.|-|-++-+ ++||-|+..+ ..++|++|..
T Consensus 60 AV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKyn-nDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 60 AVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYN-NDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred EEEeccccCCccCCCCCCCCceeeeccccceeehhhcc-cchhHHHHhhcCCccccccch
Confidence 45677775443222 259999999999999765 6899999765 4789999965
No 49
>KOG3565|consensus
Probab=93.34 E-value=0.03 Score=53.10 Aligned_cols=58 Identities=28% Similarity=0.388 Sum_probs=48.2
Q ss_pred ceEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 26 AVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 26 ~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
..+.|++. |....++.+++..|+++.||+.....+|-+|+..+.+..|.||.+|++-.
T Consensus 579 ~~~~a~~~-~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 579 RTSKALYA-FEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred cceecccC-cCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 34556777 66677799999999999999998888899999556789999999998753
No 50
>KOG3705|consensus
Probab=93.08 E-value=0.1 Score=47.56 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=38.4
Q ss_pred eEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCee
Q psy2788 27 VMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 27 ~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
.++++++ ..+...+++.+++||+|-|--.-=+ +.-+|.|.+|++.|+||+--|.
T Consensus 511 n~ivi~a-H~prt~~ei~l~vGD~vgvAGNHWd-GySKG~Nr~t~~~GlfPSyKvr 564 (580)
T KOG3705|consen 511 NVIVIEA-HIPRTNKEIDLKVGDKVGVAGNHWD-GYSKGTNRQTYKEGLFPSYKVR 564 (580)
T ss_pred ceEEEEe-cCCCcccccCcccCCeeeecccccc-cccccccccccccCCCccceee
Confidence 4556666 4344457999999999977642211 2367889899999999976554
No 51
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=93.07 E-value=0.12 Score=36.44 Aligned_cols=28 Identities=25% Similarity=0.650 Sum_probs=21.3
Q ss_pred CCCccccCCCEEEEEecC-----CCCCceeeec
Q psy2788 40 EGKLYIDAGDQIVIIEGD-----PECHWWKGQN 67 (161)
Q Consensus 40 ~~~L~f~~GDiI~Vid~~-----~e~~WW~Gqn 67 (161)
|-+|.++.||.|.|-+.. .+.+||.|+.
T Consensus 1 P~FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 1 PVFLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred CcccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 357999999999776532 2468999985
No 52
>KOG3725|consensus
Probab=92.65 E-value=0.059 Score=46.50 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=48.7
Q ss_pred HhhhcC-CceEEEecccCCCCCCCCccccCCCEEEEEecC-CCCCceeeecCCCCccceecCCCeee
Q psy2788 19 CLYRLT-PAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGD-PECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 19 ~L~~~~-P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~-~e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
.|.|+. ..++|++|| |++..+.+|++-..|+|+|..-- -|.+|-.|. +.++.|-.|..|++-
T Consensus 310 ~l~e~sgtrkArVlyD-YdAa~s~ElslladeiitVyslpGMD~dwlmgE--rGnkkGKvPvtYlEL 373 (375)
T KOG3725|consen 310 DLKECSGTRKARVLYD-YDAALSQELSLLADEIITVYSLPGMDADWLMGE--RGNKKGKVPVTYLEL 373 (375)
T ss_pred hHHhhccccceeeeec-ccccchhhhhhhhcceEEEEecCCCChHHhhhh--hcCCCCCcchhHHHh
Confidence 444543 578999999 77778889999999999999732 246799997 567889999988753
No 53
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=91.47 E-value=0.16 Score=36.80 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 41 GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 41 ~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
.+|.+++|.++.||+.+. ..-|-++|. .|+-|+.+++++-+..
T Consensus 31 kDLpi~~GE~LeVI~~t~-~~kvlCRN~-~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 31 KDLPIKPGEILEVIQFTD-DNKVLCRNS-EGKYGYVLRSHLLPLD 73 (89)
T ss_dssp TB----TT-B-EEEEESS-SSEEEEEET-TTEEEEEEGGGS----
T ss_pred ccCCcCCCCEEEEEEeCC-CCeEEEeCC-CCceeEEEHHHccCCC
Confidence 589999999999999776 468999996 7999999998876643
No 54
>KOG3601|consensus
Probab=91.31 E-value=0.045 Score=45.55 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=37.6
Q ss_pred EecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCe
Q psy2788 30 ATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81 (161)
Q Consensus 30 Al~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V 81 (161)
|+.+ |.....+||+|.+||.+.|++...+.+|.+... .|.-|+.|.||.
T Consensus 5 a~n~-f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael--~g~~g~~P~Nai 53 (222)
T KOG3601|consen 5 AKND-FLAGIRDELSFLKGDNLKILNMEDDINWYKAEL--DGPEGFIPKNAI 53 (222)
T ss_pred hhhh-hhhcCcccceeecCCceEecchHHhhhhhhHhh--cCccccCccccc
Confidence 5555 445567999999999999998665556766653 577899999997
No 55
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=87.13 E-value=0.57 Score=29.40 Aligned_cols=39 Identities=10% Similarity=0.320 Sum_probs=29.1
Q ss_pred ccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCee
Q psy2788 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 43 L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
-.+..|+.|+|++...+.+|.+=+. ..++.|+..++||+
T Consensus 17 ~~l~~g~~v~v~~~~~~~~W~~V~~-~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDGNWYKVRT-YDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT--EEEEEE-ETTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCcEEEEEEC-cCCcEEEEEccccC
Confidence 4578999999999776544777644 36778999998874
No 56
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=74.33 E-value=4 Score=26.25 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=19.3
Q ss_pred cccCCCEEEEEecCCCCCceeeecC
Q psy2788 44 YIDAGDQIVIIEGDPECHWWKGQNL 68 (161)
Q Consensus 44 ~f~~GDiI~Vid~~~e~~WW~Gqn~ 68 (161)
.|++||.|.+.-.. +..||.|...
T Consensus 2 ~~~~G~~Ve~~~~~-~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKE-EDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECC-CCEEEEEEEE
Confidence 58999999999744 5689999753
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.92 E-value=5.2 Score=32.88 Aligned_cols=41 Identities=7% Similarity=0.202 Sum_probs=32.7
Q ss_pred ccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 43 L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
=.+..|+.|+|++...+.+|.+=+.. .|+.||++..|+...
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~-~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDS-KGRTAWIPLKQLSTT 88 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeC-CCCEEeEEHHHhcCC
Confidence 45789999999997655568777753 688999999998754
No 58
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=64.23 E-value=12 Score=23.60 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=27.5
Q ss_pred ccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCe
Q psy2788 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81 (161)
Q Consensus 43 L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V 81 (161)
-.+..|+.|+|++...+ .|.+=+. ..++.|+.+..++
T Consensus 25 ~~l~~g~~v~i~~~~~~-~W~~v~~-~~g~~Gwi~~~~~ 61 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQ-DWAKITY-GSGQRGYVPGYVV 61 (63)
T ss_pred EEecCCCEEEEEEccCC-ceEEEEc-CCCCEEEEEeeee
Confidence 44789999999996542 6877664 3588899976654
No 59
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=58.37 E-value=12 Score=30.97 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=32.7
Q ss_pred ccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCee
Q psy2788 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82 (161)
Q Consensus 43 L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~ 82 (161)
=++++|+.++|+.......|-+.+.. .++.|+|+..+++
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~-~g~t~wi~~~~lt 86 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDS-SGRTGWILSKNLT 86 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEec-CCceEEEechhhc
Confidence 57899999999998776678888864 6889999988765
No 60
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=54.47 E-value=12 Score=28.47 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=15.6
Q ss_pred CccccCCCEEEEEe-----cCCCCCceeeec
Q psy2788 42 KLYIDAGDQIVIIE-----GDPECHWWKGQN 67 (161)
Q Consensus 42 ~L~f~~GDiI~Vid-----~~~e~~WW~Gqn 67 (161)
-|.|++||+|+||- ...+..||-.-.
T Consensus 17 Gl~lk~GD~IsIvA~GW~kyG~~~~~~a~p~ 47 (121)
T PF07828_consen 17 GLILKAGDIISIVASGWAKYGREDNAWAAPQ 47 (121)
T ss_dssp EEEE-TT-EEEEEEEEEEESSSSS-B-TEEE
T ss_pred eEEEcCCCEEEEEEeeeeccCCccccccCCC
Confidence 59999999999995 234456776643
No 61
>PF15505 DUF4648: Domain of unknown function (DUF4648)
Probab=53.33 E-value=38 Score=27.08 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=36.1
Q ss_pred EEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCC
Q psy2788 28 MKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79 (161)
Q Consensus 28 vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n 79 (161)
|.+..||| ...|.+|-=..+|..-|+-+..+ --++|+.+...+.|--|+-
T Consensus 1 VVieSDly-~~rPLELLPHR~Dr~dv~~~e~~-~~rfGrlq~~rq~g~h~aK 50 (170)
T PF15505_consen 1 VVIESDLY-PHRPLELLPHRSDRRDVLCREGE-ERRFGRLQNARQPGPHPAK 50 (170)
T ss_pred Ceeecccc-CCCchhccccccchhcccccccc-cccccccccCccCCCCCCC
Confidence 45778877 67889999999999988875543 2488987644444777654
No 62
>KOG4384|consensus
Probab=52.03 E-value=8 Score=34.54 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=34.8
Q ss_pred CCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeec
Q psy2788 41 GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84 (161)
Q Consensus 41 ~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~ 84 (161)
+.|.+.+||+|.+|++.+ ..-|.|- ..+++|.|+.-||.-+
T Consensus 153 d~lk~~~~~~i~~~~~~~-~~~~~g~--~~~kv~~f~~~~v~~~ 193 (361)
T KOG4384|consen 153 DSLKIKKGDIIDIIEKPP-MGTWLGL--LNNKVGSFKFIYVDVI 193 (361)
T ss_pred cchhhcccchhhccccCc-ccccccc--ccCcccccccceeccc
Confidence 689999999999999876 5678887 3679999999998743
No 63
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=49.34 E-value=6.5 Score=26.74 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=19.8
Q ss_pred cCCCCCCccccCCccccCCCCCeeEeeehh
Q psy2788 124 LNNPMDPPDILGLTTQGSQNGGATVAHRST 153 (161)
Q Consensus 124 ~~~Pm~pp~~~~~~l~~~~ng~~~~~~r~~ 153 (161)
+.+.|.+.++... |.+..+|+||||..++
T Consensus 3 ~~g~i~r~~Ae~~-L~~~~~G~FLiR~s~~ 31 (94)
T cd00173 3 YHGPISREEAEEL-LKKKPDGTFLVRDSES 31 (94)
T ss_pred cccCCCHHHHHHH-HhcCCCceEEEEecCC
Confidence 5667776332222 6667999999998875
No 64
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=46.99 E-value=16 Score=22.40 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.2
Q ss_pred CccccccccccccCCCCCCCC
Q psy2788 91 DISRPLRNSVIHTGHGDPWGK 111 (161)
Q Consensus 91 ~IS~P~~~S~ihtghg~~~g~ 111 (161)
+||.|- .|.|+.|.+.+..
T Consensus 2 ~IS~Pt--nf~H~~HvG~d~~ 20 (42)
T cd00132 2 EISTPT--DFKHISHVGWDGV 20 (42)
T ss_pred cccCCC--CcCcccccCCCCC
Confidence 689998 4999999998765
No 65
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=44.74 E-value=7.5 Score=26.15 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=18.9
Q ss_pred cCCCCCCccccCCccccCCCCCeeEeeehh
Q psy2788 124 LNNPMDPPDILGLTTQGSQNGGATVAHRST 153 (161)
Q Consensus 124 ~~~Pm~pp~~~~~~l~~~~ng~~~~~~r~~ 153 (161)
+.+.|.+.++-.+ |.+..+|+||||..++
T Consensus 4 ~~g~i~r~~Ae~l-L~~~~~G~FLvR~s~~ 32 (84)
T smart00252 4 YHGFISREEAEKL-LKNEGDGDFLVRDSES 32 (84)
T ss_pred ecccCCHHHHHHH-HhcCCCcEEEEEcCCC
Confidence 5667776322221 5565689999998776
No 66
>KOG4257|consensus
Probab=43.95 E-value=14 Score=36.22 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.5
Q ss_pred CCCCCCCCChhhhHHHhhhcC
Q psy2788 4 TKNPAERPKFSTLKDCLYRLT 24 (161)
Q Consensus 4 ~~~P~~RP~F~~l~~~L~~~~ 24 (161)
|.+|++||+|.+|+..|.+..
T Consensus 630 ayeP~kRPrftei~~~lsdv~ 650 (974)
T KOG4257|consen 630 AYEPSKRPRFTEIKAILSDVL 650 (974)
T ss_pred ccCcccCCcHHHHHHHHHHHH
Confidence 679999999999999888753
No 67
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=42.12 E-value=3.5 Score=27.07 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=14.1
Q ss_pred CccccccccccccCCCCCCCCCC
Q psy2788 91 DISRPLRNSVIHTGHGDPWGKSW 113 (161)
Q Consensus 91 ~IS~P~~~S~ihtghg~~~g~~w 113 (161)
+||.| ..|.|..|.+.++.+.
T Consensus 1 ~Is~P--~nf~H~~HVg~d~~~g 21 (59)
T PF00786_consen 1 DISNP--TNFKHVAHVGWDPNTG 21 (59)
T ss_dssp TB-----EEEEEEEEEEEETTTT
T ss_pred CCCCC--CCCcceeeeccCCCcc
Confidence 58889 6899999998876444
No 68
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=40.97 E-value=64 Score=21.40 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHhhhcCCceEEEecccCCCCCCCCccccCCCEEEEEec
Q psy2788 17 KDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEG 56 (161)
Q Consensus 17 ~~~L~~~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~ 56 (161)
.++=.+.+|..-..+++ +|+-..++.|+.||.|.+|.+
T Consensus 19 ~~lr~~~k~~~DI~I~N--GF~~~~d~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 19 FELRKESKPDADIVILN--GFPTKEDIELKEGDEVFLIKK 56 (57)
T ss_pred HHHHHhhCCCCCEEEEc--CcccCCccccCCCCEEEEEeC
Confidence 33333445554455666 345557899999999999974
No 69
>KOG0169|consensus
Probab=40.26 E-value=16 Score=35.53 Aligned_cols=65 Identities=28% Similarity=0.485 Sum_probs=45.6
Q ss_pred ecCCCCCCCccccccccccccCCCCC-CCCCCCCCCCCCcccc---CCCCCCccccCCccccCCCCCeeEeee
Q psy2788 83 PMRRKQPDDISRPLRNSVIHTGHGDP-WGKSWGSPSHIDPMYL---NNPMDPPDILGLTTQGSQNGGATVAHR 151 (161)
Q Consensus 83 p~~~~~~~~IS~P~~~S~ihtghg~~-~g~~wG~p~~idd~y~---~~Pm~pp~~~~~~l~~~~ng~~~~~~r 151 (161)
|.....-.|.++|+.+.||+|+|..= .|.-+|.+..|+ .|. +-=+- .+..+++...||--+|.|.
T Consensus 282 p~~~~V~qDM~qPLsHYFI~SSHNTYLtg~Ql~g~sSve-gyI~ALk~GcR---~vElD~Wdg~~~epvV~HG 350 (746)
T KOG0169|consen 282 PIHRKVHQDMDQPLSHYFISSSHNTYLTGDQLGGPSSVE-GYIRALKKGCR---CVELDCWDGPNGEPVVYHG 350 (746)
T ss_pred cccchhhhcccCcchhheEeccccceecccccCCccccH-HHHHHHHhCCe---EEEEecccCCCCCeeEecC
Confidence 44444445779999999999999876 588888877765 442 22232 3666777777877777775
No 70
>PF05774 Herpes_heli_pri: Herpesvirus helicase-primase complex component; InterPro: IPR008650 This family consists of several helicase-primase complex components from the Gammaherpesviruses.
Probab=38.21 E-value=36 Score=26.25 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=34.1
Q ss_pred CccceecCCCeeecCC---CCCCCccccccccccccCCCCC-CCCCCCCCCCCC
Q psy2788 71 FNIGMFPRNIMDPMRR---KQPDDISRPLRNSVIHTGHGDP-WGKSWGSPSHID 120 (161)
Q Consensus 71 g~~G~FP~n~V~p~~~---~~~~~IS~P~~~S~ihtghg~~-~g~~wG~p~~id 120 (161)
-+.=+.|.++|+.... ...++++.. -||||.+|.. --.-||-|..||
T Consensus 36 t~FWLlP~~f~~~~~~~P~~p~dcl~P~---~fi~T~~G~~~W~~~~~lP~~v~ 86 (128)
T PF05774_consen 36 TNFWLLPRSFVESAPIKPPLPSDCLAPK---FFIFTKDGPSCWHQDWPLPSNVN 86 (128)
T ss_pred CceeecccccccCCCCCCCCCccccCcc---eEEEeCCCchhhccCCCCCcccc
Confidence 3566788888884322 234566444 5899999998 478999999988
No 71
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=37.72 E-value=28 Score=23.11 Aligned_cols=23 Identities=13% Similarity=0.465 Sum_probs=12.4
Q ss_pred ccCCCEEEEEecCC--CCCceeeec
Q psy2788 45 IDAGDQIVIIEGDP--ECHWWKGQN 67 (161)
Q Consensus 45 f~~GDiI~Vid~~~--e~~WW~Gqn 67 (161)
|++||.|+|.-... ...|+.|..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 78999999996432 355666654
No 72
>KOG1095|consensus
Probab=36.94 E-value=18 Score=36.60 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.9
Q ss_pred CCCCCCCCChhhhHHHhhhc
Q psy2788 4 TKNPAERPKFSTLKDCLYRL 23 (161)
Q Consensus 4 ~~~P~~RP~F~~l~~~L~~~ 23 (161)
.++|++||+|+.|.+.+...
T Consensus 942 ~~~pe~RP~F~~i~~q~~~i 961 (1025)
T KOG1095|consen 942 KHDPEDRPSFRTIVEQDPAI 961 (1025)
T ss_pred cCChhhCccHHHHHhhhhhh
Confidence 58999999999999866553
No 73
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=36.43 E-value=28 Score=25.14 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.7
Q ss_pred CCccccCCCEEEEEecCCC
Q psy2788 41 GKLYIDAGDQIVIIEGDPE 59 (161)
Q Consensus 41 ~~L~f~~GDiI~Vid~~~e 59 (161)
....++.||+|.|.|.+|-
T Consensus 52 e~~~~k~GD~V~I~EtRPL 70 (87)
T COG0186 52 ECNEAKVGDIVRIAETRPL 70 (87)
T ss_pred ccccCCCCCEEEEEEcccc
Confidence 6788999999999998873
No 74
>KOG1314|consensus
Probab=36.30 E-value=24 Score=31.91 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=30.0
Q ss_pred CCccccCCCEEEEEecCCCCCceee-------ecCC-CC-ccceecCCC-eeec
Q psy2788 41 GKLYIDAGDQIVIIEGDPECHWWKG-------QNLS-TF-NIGMFPRNI-MDPM 84 (161)
Q Consensus 41 ~~L~f~~GDiI~Vid~~~e~~WW~G-------qn~r-tg-~~G~FP~n~-V~p~ 84 (161)
..|++++||.|.+..+.+ .|=.| ++.. .. --|+||++. |+.+
T Consensus 332 prisL~p~d~i~~tr~~~--~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~ 383 (414)
T KOG1314|consen 332 PRISLPPGDGIKATRGFN--HWLYGEEILSEMFNESRERKIRGWFPRNCAVEKC 383 (414)
T ss_pred cccccCCCcceeeeeeee--cccchhhhhhHHHhhcchhhhccccccccccccc
Confidence 469999999999998775 48888 3321 11 249999886 5554
No 75
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=35.32 E-value=21 Score=29.22 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.2
Q ss_pred CCCCCCCCChhhhHHHhhhc
Q psy2788 4 TKNPAERPKFSTLKDCLYRL 23 (161)
Q Consensus 4 ~~~P~~RP~F~~l~~~L~~~ 23 (161)
+.+|++||+|.+|...|...
T Consensus 249 ~~~p~~Rps~~~l~~~l~~~ 268 (316)
T cd05108 249 MIDADSRPKFRELIIEFSKM 268 (316)
T ss_pred cCChhhCcCHHHHHHHHHHH
Confidence 46899999999999988764
No 76
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=33.86 E-value=41 Score=17.71 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=11.2
Q ss_pred ccCCCEEEEEecC
Q psy2788 45 IDAGDQIVIIEGD 57 (161)
Q Consensus 45 f~~GDiI~Vid~~ 57 (161)
|+.||.|.|+.+.
T Consensus 2 ~~~G~~V~I~~G~ 14 (28)
T smart00739 2 FEVGDTVRVIAGP 14 (28)
T ss_pred CCCCCEEEEeECC
Confidence 7899999999964
No 77
>KOG0192|consensus
Probab=32.78 E-value=27 Score=30.88 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.6
Q ss_pred CCCCCCCCChhhhHHHhhhc
Q psy2788 4 TKNPAERPKFSTLKDCLYRL 23 (161)
Q Consensus 4 ~~~P~~RP~F~~l~~~L~~~ 23 (161)
..+|+.||+|.+|...|...
T Consensus 284 ~~dp~~RP~f~ei~~~l~~~ 303 (362)
T KOG0192|consen 284 LVDPSRRPSFLEIVSRLESI 303 (362)
T ss_pred CCCCCcCCCHHHHHHHHHHH
Confidence 46899999999999999864
No 78
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=32.33 E-value=21 Score=21.19 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=14.8
Q ss_pred ccccccccccccCCCCCCCCC
Q psy2788 92 ISRPLRNSVIHTGHGDPWGKS 112 (161)
Q Consensus 92 IS~P~~~S~ihtghg~~~g~~ 112 (161)
||.|. .|.|..|.+.+++.
T Consensus 1 IS~P~--nf~H~~HVg~d~~~ 19 (36)
T smart00285 1 ISTPT--DFKHIAHVGFDGQT 19 (36)
T ss_pred CCCCC--CCcEEEEeeECCCC
Confidence 67787 78999999876533
No 79
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=32.09 E-value=37 Score=23.95 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=14.2
Q ss_pred CccccCCCEEEEEecC
Q psy2788 42 KLYIDAGDQIVIIEGD 57 (161)
Q Consensus 42 ~L~f~~GDiI~Vid~~ 57 (161)
.+.+++||.|.||.+.
T Consensus 6 ~~~I~~GD~V~Vi~G~ 21 (83)
T CHL00141 6 KMHVKIGDTVKIISGS 21 (83)
T ss_pred eCcccCCCEEEEeEcC
Confidence 5789999999999976
No 80
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.32 E-value=50 Score=26.86 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=28.3
Q ss_pred CCChhhhHHHhhhcCCceEEEecccCCCCCCCCccccCCCEEEEEec
Q psy2788 10 RPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEG 56 (161)
Q Consensus 10 RP~F~~l~~~L~~~~P~~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~ 56 (161)
-|.|..|.-+|....|. |-|. ..-+-|.|++||+|+-|-+
T Consensus 41 d~~lg~ilplla~l~P~---anY~----~kk~~l~~~kgerIitiy~ 80 (193)
T COG4871 41 DPPLGGILPLLAPLFPR---ANYS----DKKNILILQKGERIITIYG 80 (193)
T ss_pred CCCcchhHHHhHhhCCC---cccc----cccceEEEeeccEEEEEcc
Confidence 36677777777777766 3332 3347899999999988853
No 81
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=30.40 E-value=38 Score=24.06 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.1
Q ss_pred cccCCCEEEEEecCCC
Q psy2788 44 YIDAGDQIVIIEGDPE 59 (161)
Q Consensus 44 ~f~~GDiI~Vid~~~e 59 (161)
.++.||+|.|.|.+|-
T Consensus 53 ~~k~GD~V~I~e~rPl 68 (84)
T PRK05610 53 EAKIGDVVRIMETRPL 68 (84)
T ss_pred CCCCCCEEEEEEcccC
Confidence 6999999999998873
No 82
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=29.90 E-value=44 Score=23.21 Aligned_cols=16 Identities=44% Similarity=0.800 Sum_probs=13.9
Q ss_pred CccccCCCEEEEEecC
Q psy2788 42 KLYIDAGDQIVIIEGD 57 (161)
Q Consensus 42 ~L~f~~GDiI~Vid~~ 57 (161)
.+.+++||.|.|+.+.
T Consensus 4 ~~~I~kGD~V~Vi~G~ 19 (76)
T PRK12281 4 KLKVKKGDMVKVIAGD 19 (76)
T ss_pred cccccCCCEEEEeEcC
Confidence 3679999999999976
No 83
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=29.75 E-value=48 Score=22.74 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=13.7
Q ss_pred cccCCCEEEEEecCC
Q psy2788 44 YIDAGDQIVIIEGDP 58 (161)
Q Consensus 44 ~f~~GDiI~Vid~~~ 58 (161)
.++.||+|.|.+.+|
T Consensus 48 ~~k~GD~V~I~ecrP 62 (71)
T TIGR03635 48 ECKVGDVVRIIETRP 62 (71)
T ss_pred CCCCCCEEEEEEcCC
Confidence 699999999999876
No 84
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=29.37 E-value=32 Score=27.97 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=17.0
Q ss_pred CCCCCCCCChhhhHHHhhhc
Q psy2788 4 TKNPAERPKFSTLKDCLYRL 23 (161)
Q Consensus 4 ~~~P~~RP~F~~l~~~L~~~ 23 (161)
..+|++||++.+|...|.+.
T Consensus 249 ~~~p~~Rp~~~~l~~~l~~~ 268 (303)
T cd05110 249 MIDADSRPKFKELAAEFSRM 268 (303)
T ss_pred CCChhhCcCHHHHHHHHHHH
Confidence 35899999999999988774
No 85
>PF12736 CABIT: Cell-cycle sustaining, positive selection,
Probab=26.64 E-value=93 Score=25.54 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=33.2
Q ss_pred ChhhhHHHhhhcCCceEEEecccCCCC----------CCCCccccCCCEEEEE
Q psy2788 12 KFSTLKDCLYRLTPAVMKATQNCHEID----------EEGKLYIDAGDQIVII 54 (161)
Q Consensus 12 ~F~~l~~~L~~~~P~~vrAl~d~~~~~----------e~~~L~f~~GDiI~Vi 54 (161)
-|..+.+++....|..+.+..+| ... ..+...+.+||.+.|+
T Consensus 71 ~f~tV~eL~~~~~p~~v~~~~~~-~~~~~~~~~~~~~~~~~~~v~~Ge~L~l~ 122 (256)
T PF12736_consen 71 PFETVYELLSRGFPLRVVVTKDI-TFSSASGENSSVSDYGKRTVPAGEVLRLL 122 (256)
T ss_pred ccCCHHHHhhccCCCEEEEcCcc-ceecccccccccccCCceEECCCCEEEEE
Confidence 68888888766678888888883 333 2468999999999999
No 86
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=26.20 E-value=54 Score=23.33 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=14.2
Q ss_pred cccCCCEEEEEecCCC
Q psy2788 44 YIDAGDQIVIIEGDPE 59 (161)
Q Consensus 44 ~f~~GDiI~Vid~~~e 59 (161)
.++.||+|.|.+.+|-
T Consensus 50 ~~~~GD~V~I~e~RPl 65 (84)
T CHL00142 50 ECNIGDQVLIEETRPL 65 (84)
T ss_pred CCCCCCEEEEEEcCCC
Confidence 6999999999998874
No 87
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=25.00 E-value=1.6e+02 Score=19.18 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=24.5
Q ss_pred ChhhhHHHhhhcCCc-------eEEEecccCCCCCCCCccccCCCEEEEEe
Q psy2788 12 KFSTLKDCLYRLTPA-------VMKATQNCHEIDEEGKLYIDAGDQIVIIE 55 (161)
Q Consensus 12 ~F~~l~~~L~~~~P~-------~vrAl~d~~~~~e~~~L~f~~GDiI~Vid 55 (161)
|..+|.+.|.+..|. .+....+ -..-. .+..++.||.|.|+-
T Consensus 27 tv~~ll~~l~~~~~~~~~~~~~~~~v~vN-g~~v~-~~~~l~~gD~v~i~p 75 (80)
T cd00754 27 TVGELLDALEARYPGLLEELLARVRIAVN-GEYVR-LDTPLKDGDEVAIIP 75 (80)
T ss_pred cHHHHHHHHHHHCchHHHhhhhcEEEEEC-CeEcC-CCcccCCCCEEEEeC
Confidence 566777777765443 3333333 11111 456788899988875
No 88
>KOG0040|consensus
Probab=24.67 E-value=3.1 Score=43.64 Aligned_cols=55 Identities=15% Similarity=0.332 Sum_probs=43.0
Q ss_pred eEEEecccCCCCCCCCccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeeecC
Q psy2788 27 VMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85 (161)
Q Consensus 27 ~vrAl~d~~~~~e~~~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p~~ 85 (161)
.|-|+|+ |....|.+...++||+.+.+-..+ -+||+=. ...+-|+.|+-||+.+-
T Consensus 970 ~v~alyd-~q~kSprev~mKkgDvltll~s~n-kdwwkve--~~d~qg~vpa~yvk~~~ 1024 (2399)
T KOG0040|consen 970 CVLALYD-YQEKSPREVTMKKGDVLTLLNSIN-KDWWKVE--VNDRQGFVPAAYVKRLD 1024 (2399)
T ss_pred HHHHHHH-HHhcCHHHHHHhhhhHHHHHhhcc-cccccch--hhhhcCcchHHHHHHhc
Confidence 3458887 434567899999999998887554 5799997 35677999999998754
No 89
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=23.99 E-value=44 Score=27.62 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=17.3
Q ss_pred CCCCCCCCChhhhHHHhhhc
Q psy2788 4 TKNPAERPKFSTLKDCLYRL 23 (161)
Q Consensus 4 ~~~P~~RP~F~~l~~~L~~~ 23 (161)
+.+|++||++.+|...|.+.
T Consensus 274 ~~~p~~Rps~~ell~~l~~~ 293 (334)
T cd05100 274 HAVPSQRPTFKQLVEDLDRV 293 (334)
T ss_pred ccChhhCcCHHHHHHHHHHH
Confidence 46899999999999988775
No 90
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=23.14 E-value=37 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.2
Q ss_pred CCCCCCCCChhhhHHHhhh
Q psy2788 4 TKNPAERPKFSTLKDCLYR 22 (161)
Q Consensus 4 ~~~P~~RP~F~~l~~~L~~ 22 (161)
+.+|++||+++.+.++|..
T Consensus 255 ~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 255 RQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred ccChhhccCccCHHHHHhC
Confidence 4689999999988888876
No 91
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=22.91 E-value=1.3e+02 Score=18.67 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=27.0
Q ss_pred CccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCe
Q psy2788 42 KLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIM 81 (161)
Q Consensus 42 ~L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V 81 (161)
--.++.|.++.|++.. .+|-+=+ ..+..|+.+.+.+
T Consensus 18 v~~l~~g~~v~v~~~~--~~W~~V~--~~g~~GWv~~~~l 53 (55)
T PF06347_consen 18 VARLEPGVPVRVIECR--GGWCKVR--ADGRTGWVHKSLL 53 (55)
T ss_pred EEEECCCCEEEEEEcc--CCeEEEE--ECCeEEeEEeeec
Confidence 3678899999999764 3577666 4678899987754
No 92
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=22.25 E-value=69 Score=23.94 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=15.7
Q ss_pred CCCCccccCCCEEEEEecCC
Q psy2788 39 EEGKLYIDAGDQIVIIEGDP 58 (161)
Q Consensus 39 e~~~L~f~~GDiI~Vid~~~ 58 (161)
++...+++.||+|.|.|.+|
T Consensus 72 De~cn~~kvGD~V~I~E~RP 91 (108)
T PRK08572 72 NPPCIDAKVGDKVKIAECRP 91 (108)
T ss_pred CCCCCCCCCCCEEEEEEcCC
Confidence 33335699999999999876
No 93
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=22.19 E-value=1.5e+02 Score=19.34 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.6
Q ss_pred CCccccCCCEEEEEec
Q psy2788 41 GKLYIDAGDQIVIIEG 56 (161)
Q Consensus 41 ~~L~f~~GDiI~Vid~ 56 (161)
+...++.||.|+|+.-
T Consensus 47 ~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 47 AQHIVQDGDQILLFQV 62 (66)
T ss_pred CccccCCCCEEEEEEE
Confidence 5678999999999874
No 94
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=22.02 E-value=1.1e+02 Score=28.52 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=30.0
Q ss_pred ccccCCCEEEEEecCCCCCceeeecCCCCccceecCCCeee
Q psy2788 43 LYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83 (161)
Q Consensus 43 L~f~~GDiI~Vid~~~e~~WW~Gqn~rtg~~G~FP~n~V~p 83 (161)
=.+..|+.|+|+... +.+|++=+.. .|+.||.-..|+..
T Consensus 103 gsl~~G~~V~Vl~~~-~ngW~kI~~~-~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETTE-SNGWHKITYN-DGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeecc-cCCeEEEEcC-CCCEEEEecccccC
Confidence 458899999998632 2469988853 47899999999863
No 95
>KOG4278|consensus
Probab=21.22 E-value=53 Score=32.46 Aligned_cols=18 Identities=22% Similarity=0.614 Sum_probs=14.7
Q ss_pred CCCCCCCChhhhHHHhhh
Q psy2788 5 KNPAERPKFSTLKDCLYR 22 (161)
Q Consensus 5 ~~P~~RP~F~~l~~~L~~ 22 (161)
-+|+|||+|++|-.-+..
T Consensus 505 WsPsDRPsFaeiHqafEt 522 (1157)
T KOG4278|consen 505 WSPSDRPSFAEIHQAFET 522 (1157)
T ss_pred CCcccCccHHHHHHHHHH
Confidence 489999999998776544
No 96
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=20.95 E-value=84 Score=21.36 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.4
Q ss_pred CCCCccccCCCEEEEEec
Q psy2788 39 EEGKLYIDAGDQIVIIEG 56 (161)
Q Consensus 39 e~~~L~f~~GDiI~Vid~ 56 (161)
+|..|.+++||.|++...
T Consensus 9 ~P~~i~v~~GdtVt~~N~ 26 (83)
T TIGR02657 9 ETPELHVKVGDTVTWINR 26 (83)
T ss_pred cCCEEEECCCCEEEEEEC
Confidence 578899999999988754
No 97
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=20.02 E-value=43 Score=21.98 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=13.4
Q ss_pred ccc-CCCCCeeEeeehhH
Q psy2788 138 TQG-SQNGGATVAHRSTE 154 (161)
Q Consensus 138 l~~-~~ng~~~~~~r~~~ 154 (161)
|.. .++|+||||..+++
T Consensus 15 L~~~~~~G~FLvR~s~~~ 32 (77)
T PF00017_consen 15 LMQGKPDGTFLVRPSSSK 32 (77)
T ss_dssp HHTTSSTTEEEEEEESSS
T ss_pred HHhcCCCCeEEEEecccc
Confidence 445 78999999988763
Done!