RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2788
(161 letters)
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G
protein, transferase; HET: GNP; NMR {Homo sapiens}
Length = 44
Score = 61.2 bits (148), Expect = 9e-14
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 87 KQPDDISRPLRNSVIHTGHGDPWGK-SWGSPSHIDPMYLNN 126
DIS+PL+NS IHTGHGD + WG P ID +YL N
Sbjct: 4 LSAQDISQPLQNSFIHTGHGDSDPRHCWGFPDRIDELYLGN 44
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 53.5 bits (128), Expect = 2e-10
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
G L ++ GD + + + + E +WW+G+N +T +G FP N + P
Sbjct: 31 FGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 52.7 bits (126), Expect = 3e-10
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 28 MKATQNCH-----EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMD 82
M+ Q + L ++ GD + + + + E +WW+G+N +T +G FP N +
Sbjct: 7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
Query: 83 P 83
P
Sbjct: 67 P 67
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 48.8 bits (117), Expect = 7e-09
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+ +L I +GD++ I++ WW Q + + G+ P ++P+R K+ +
Sbjct: 19 SQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHTE 71
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 45.4 bits (108), Expect = 1e-07
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+G L + G+Q+ I+E E WWK Q+L+T G P N
Sbjct: 19 HDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFN 57
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 45.8 bits (109), Expect = 1e-07
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L G++ I+E WW+ ++L+T G P N
Sbjct: 19 RWTDLSFHKGEKFQILE-FGPGDWWEARSLTTGETGYIPSN 58
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 45.0 bits (107), Expect = 2e-07
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L G+++ ++E E WWK ++L T G P N
Sbjct: 20 HPDDLSFKKGEKMKVLEEHGE--WWKAKSLLTKKEGFIPSN 58
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 44.6 bits (106), Expect = 2e-07
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 28 MKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+KA + D L GD I ++ + W G++ T G FP +
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 44.5 bits (106), Expect = 3e-07
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+ +L I +GD++ I++ WW Q + + G+ P ++P+
Sbjct: 15 SQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 44.6 bits (106), Expect = 3e-07
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
E L G++ I+ E WW+ ++L+T G P + P+ R D
Sbjct: 18 TEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYKD 69
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 44.7 bits (106), Expect = 3e-07
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ G+L GD + I+E W++ ++ ++ G+
Sbjct: 29 PKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAG 70
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 44.2 bits (105), Expect = 4e-07
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 89
E +L + G+ + +IE + + WWK +N +G+ P+N + +
Sbjct: 18 VTEEELNFEKGETMEVIEKPENDPEWWKCKNARG-QVGLVPKNYVVVLSDGPA 69
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 44.2 bits (105), Expect = 4e-07
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
E L ++ G + +I+E + HWW+ ++ + G P N + + D
Sbjct: 15 EAHDLRLERGQEYIILE-KNDLHWWRARDKYG-SEGYIPSNYVTGKKSNNLDQ 65
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 44.2 bits (105), Expect = 5e-07
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E L G++ I+ E WW+ ++L+T G P N
Sbjct: 28 TEDDLSFHKGEKFQILN-SSEGDWWEARSLTTGETGYIPSN 67
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 43.5 bits (103), Expect = 8e-07
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 28 MKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+K + + L GD + ++ + + W G++ +T G FP +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSS 61
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 42.9 bits (102), Expect = 8e-07
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++E L GD + I + PE WW ++ GM P
Sbjct: 13 NDEEDLPFKKGDILRIRD-KPEEQWWNAEDSEG-KRGMIPVP 52
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 43.6 bits (103), Expect = 9e-07
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L GDQ+V++E E WWK ++L+T G P N
Sbjct: 38 HHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSN 76
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 43.4 bits (103), Expect = 9e-07
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E L GD + I+ + +W+K +N G+ P N
Sbjct: 20 FHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPAN 63
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 43.1 bits (102), Expect = 1e-06
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 22 RLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ +K + L GD I ++ + + W G++ + G FP +
Sbjct: 3 HMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSS 60
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 43.5 bits (103), Expect = 1e-06
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L GDQ+V++E E WWK ++L+T G P N
Sbjct: 16 SPDDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSN 54
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 42.2 bits (100), Expect = 2e-06
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ ++ I GD+I ++ D W K N +T G+ P
Sbjct: 13 KDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTT 54
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 41.8 bits (99), Expect = 2e-06
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E+ +L D+I+ IE + WW G+ + G+FP N
Sbjct: 12 AEDNELTFVENDKIINIEFVDD-DWWLGELEKDGSKGLFPSN 52
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 42.2 bits (100), Expect = 2e-06
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++E L GD + I + E WW ++ GM P
Sbjct: 15 NDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEG-KRGMIPVP 54
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 41.5 bits (98), Expect = 4e-06
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L + GD+ I+E + WW+ ++ G P N
Sbjct: 21 NANDLQLRKGDEYFILE-ESNLPWWRARD-KNGQEGYIPSN 59
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 41.5 bits (98), Expect = 4e-06
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ G L G+ +++IE P+ WW ++ N G+ PR
Sbjct: 23 QVGDLTFKKGEILLVIEKKPD-GWWIAKDAKG-NEGLVPRT 61
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 42.1 bits (99), Expect = 4e-06
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 89
E +L + G+ + +IE + + WWK +N +G+ P+N + +
Sbjct: 29 VTEEELNFEKGETMEVIEKPENDPEWWKCKNARG-QVGLVPKNYVVVLSDGPA 80
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 41.3 bits (97), Expect = 6e-06
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 88
+ G+++ +I + WWK +LST P + +
Sbjct: 30 DISPPIFRRGEKLRVISDEGG--WWKAISLSTGRESYIPGICVARVSGPS 77
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 41.2 bits (97), Expect = 7e-06
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 38 DEEGKLYIDAGDQIVIIE----GDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 88
+ E ++ + GD + I+ + WWK + + NIG P N ++ ++R++
Sbjct: 27 NPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG-NIGYIPYNYIEIIKRRK 80
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 40.6 bits (96), Expect = 8e-06
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPMRR 86
EE +L +G+ + +++ WW G + +G+FP N + PM R
Sbjct: 13 LEEDELGFRSGEVVEVLDSSNP-SWWTG----RLHNKLGLFPANYVAPMMR 58
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 40.7 bits (96), Expect = 8e-06
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDIS 93
DE L ++ D +++ + +W++ N+ T G+FP + + +P+ ++
Sbjct: 21 DE---LELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAYYAIEVTK-EPEHMA 71
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 39.5 bits (93), Expect = 2e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+E ++ GD IV ++ + W G T GM P N
Sbjct: 18 QDEDEVSFRDGDYIVNVQPIDDG-WMYGTVQRTGRTGMLPAN 58
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 40.0 bits (94), Expect = 2e-05
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 89
+ +L I+ + + +IE W K +N +G P + P
Sbjct: 26 QPDELTIEEHEVLEVIEDGDMEDWVKARNKVG-QVGYVPEKYLQFPTSSGP 75
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 40.1 bits (94), Expect = 2e-05
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
D E +L G+ I +I E +W++G+ T G+FP +
Sbjct: 29 DLEVELSFRKGEHICLIRKVNE-NWYEGRITGTGRQGIFPAS 69
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 39.6 bits (93), Expect = 2e-05
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
EG + + G+ + ++E D W + + G P +
Sbjct: 20 SEGTISMAEGEDLSLMEEDKGDGWTRVRR-KEGGEGYVPTS 59
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 39.5 bits (93), Expect = 2e-05
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
D + ++ G++I ++ E +W++G+ T G+FP
Sbjct: 19 DTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPIT 59
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 39.7 bits (93), Expect = 2e-05
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ +L + ++ +++ E HWW+ Q+ + G P +
Sbjct: 33 DPQELALRCDEEYYLLD-SSEIHWWRVQD-KNGHEGYAPSS 71
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 40.5 bits (95), Expect = 2e-05
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD-----IS 93
L G++ II + E WW+ ++++T G P N + P Q ++ +
Sbjct: 40 TTEDLSFKKGERFQIIN-NTEGDWWEARSIATGKSGYIPSNYVVPADSIQAEEWYFGKMG 98
Query: 94 R 94
R
Sbjct: 99 R 99
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 38.7 bits (91), Expect = 3e-05
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
DE L ++ D +++ + +W++ N+ T G+FP
Sbjct: 18 DE---LELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAY 55
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 38.7 bits (91), Expect = 4e-05
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+L + GD I I +P W G+ L G P
Sbjct: 13 GSPSELPLKKGDVIYITREEPS-GWSLGKLLDGSKEGWVPTA 53
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 39.2 bits (92), Expect = 4e-05
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+L + G+ I + + W +G+N + G+ P +
Sbjct: 22 PGNNELTVTEGEIITVTNPNVGGGWLEGKN-NKGEQGLVPTD 62
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 39.3 bits (92), Expect = 4e-05
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ +L + ++ +++ E HWW+ Q+ + + G P +
Sbjct: 32 DPQELALRRNEEYCLLD-SSEIHWWRVQDRNG-HEGYVPSS 70
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 38.7 bits (91), Expect = 4e-05
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ + +L + GD + I + W +N S G+ P
Sbjct: 13 ENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEE 53
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 38.8 bits (91), Expect = 4e-05
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
D + ++ G++I ++ E +W++G+ T G+FP
Sbjct: 18 DTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPIT 58
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 38.7 bits (91), Expect = 4e-05
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E+ +L AGD++ + + E W +G+ L + +G++P N
Sbjct: 15 QEQDELSFKAGDELTKLGEEDEQGWCRGR-LDSGQLGLYPAN 55
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 41.0 bits (95), Expect = 5e-05
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLR 97
+ E L + G+++ I+ WW+ +N G+ P N + D S+
Sbjct: 159 ERETDLPFEQGERLEILS-KTNQDWWEARNALG-TTGLVPANYVQIQMEFHNDRTSKGAS 216
Query: 98 NSVIHTGHGDPWGKSWGSPSHIDPMYLNNPMDPP 131
S G + + S S P P
Sbjct: 217 QS--SIGSSGGGAERFSSASTSSDNIELQPRLPA 248
Score = 33.3 bits (75), Expect = 0.022
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 18 DCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFP 77
+ RL + +L + G +++ + +K + IG P
Sbjct: 241 ELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSN-GMYKAE--LDGQIGSVP 297
Query: 78 RN 79
Sbjct: 298 HT 299
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 38.6 bits (90), Expect = 6e-05
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNI-------GMFPRN 79
L AGD++ +++ WW ++L G P N
Sbjct: 20 TAEDLSFRAGDKLQVLD-TSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 38.4 bits (90), Expect = 6e-05
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ + +L + GD + I + W +N S G+ P
Sbjct: 17 ENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEE 57
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 37.9 bits (89), Expect = 7e-05
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ ++ ID GD I +I GD W G + G+FP +
Sbjct: 12 QGDDEISIDPGDIITVIRGDDGSGWTYG----ECDGLKGLFPTS 51
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 38.3 bits (89), Expect = 1e-04
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 38 DEEGKLYIDAGDQIVIIEGD----PECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP 89
+ E ++ + GD + I+ + WWK + + NIG P N ++ ++R++
Sbjct: 27 NPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG-NIGYIPYNYIEIIKRRKK 81
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 37.6 bits (88), Expect = 1e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E G L G++I++ + D E WW G G+FP N
Sbjct: 20 VEPGDLTFTEGEEILVTQKDGE--WWTGS--IGDRSGIFPSN 57
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 37.6 bits (88), Expect = 1e-04
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E+ +L G+ I +++ D + +WW+G+N G+FP N
Sbjct: 17 VEDNELTFKHGELITVLD-DSDANWWQGENHR--GTGLFPSN 55
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 37.7 bits (88), Expect = 1e-04
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+L + GD + I +P W + L G P
Sbjct: 15 GSSSELPLKKGDIVFISRDEPS-GWSLAKLLDGSKEGWVPTA 55
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 37.6 bits (88), Expect = 1e-04
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQ 88
+L + G+ I ++ + W KG +L T G+FP + + P+
Sbjct: 19 HRPEELDLQKGEGIRVLGKYQD-GWLKGLSLLTGRTGIFPSDYVIPVSGPS 68
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 37.4 bits (87), Expect = 1e-04
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 36 EIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86
+ DE + GD ++ + E W NL T G+ ++++ + R
Sbjct: 19 DTDE---ISFLKGDMFIVHN-ELEDGWMWVTNLRTDEQGLIVEDLVEEVGR 65
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 37.3 bits (87), Expect = 1e-04
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRR 86
+L + D + +++ + WWK ++ + G P NI+ P
Sbjct: 21 NSSELSVKQRDVLEVLDDSRK--WWKVRDPAG-QEGYVPYNILTPYPA 65
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 37.2 bits (87), Expect = 2e-04
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ L I G+++ ++ + W + Q + G P
Sbjct: 18 GDNTLSITKGEKLRVLGYNHNGEWCEAQTKN--GQGWVPSA 56
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 36.7 bits (86), Expect = 2e-04
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
++G L + GD++ ++E W+KG + N G+FP N
Sbjct: 14 QQDGDLGLKPGDKVQLLEKLSP-EWYKG----SCNGRTGIFPAN 52
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 36.8 bits (86), Expect = 2e-04
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
E+G+L GD I +++ +WWKG + GMFPRN
Sbjct: 14 QEDGELGFRRGDFIHVMDNSDP-NWWKG----ACHGQTGMFPRN 52
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 37.2 bits (87), Expect = 2e-04
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E +L + GD++ +++ + W+ G + T G FP N
Sbjct: 19 QNEDELELREGDRVDVMQQCDD-GWFVGVSRRTQKFGTFPGN 59
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 37.3 bits (87), Expect = 2e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQ-NLSTFNIGMFPRN 79
D + +L G+ I++ + + WW G G+FP +
Sbjct: 22 DNDDELTFIEGEVIIVTGEEDQ-EWWIGHIEGQPERKGVFPVS 63
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 36.9 bits (86), Expect = 2e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
E+ +L AG+ I +++ +WWKG + IG+FP N
Sbjct: 29 AEDNELTFKAGEIITVLDDSDP-NWWKG----ETHQGIGLFPSN 67
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 36.6 bits (85), Expect = 2e-04
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN------IGMFPRN 79
++ + GD + ++ WWK + T N G P
Sbjct: 14 SPREVTMKKGDILTLLN-STNKDWWKVEVKITVNGKTYERQGFVPAA 59
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 36.5 bits (85), Expect = 2e-04
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 25 PAVMKATQN-CHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIM 81
P KA Q ++ L ++ GD + + + W+G+ N G+FP +
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGE----VNGRKGLFPFTHV 55
Query: 82 DPMRRKQPDD 91
+ PD+
Sbjct: 56 KIFDPQNPDE 65
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 37.1 bits (86), Expect = 3e-04
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKG----QNLSTFNIGMFPRNIMDPMRRK 87
+ L + AGD I ++E P+ WKG T IG FP I++ + ++
Sbjct: 31 HDPTALNVRAGDVITVLEQHPD-GRWKGHIHESQRGTDRIGYFPPGIVEVVSKR 83
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 36.4 bits (85), Expect = 3e-04
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 38 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFN--IGMFPRN 79
+E G L GD I I++ D + WW G N G+FP N
Sbjct: 15 EESGDLPFRKGDVITILKKSDSQNDWWTG----RVNGREGIFPAN 55
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ +L I G+ I ++ E W +G N GMFP N
Sbjct: 13 VHDDELTIRVGEIIRNVKKLQEEGWLEG----ELNGRRGMFPDN 52
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 36.0 bits (84), Expect = 3e-04
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
E G+L GD I +I D +WW+G N G+FP N
Sbjct: 14 QESGELAFKRGDVITLINKDDP-NWWEG----QLNNRRGIFPSN 52
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 36.6 bits (85), Expect = 3e-04
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
DE + + D +++++ + W G+ L G FP +
Sbjct: 32 DE---VTLQQADVVLVLQQED--GWLYGERLRDGETGWFPED 68
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 36.7 bits (85), Expect = 4e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECH---WWKGQNLSTFNIGMFPRN 79
DE L + GD I + + W G +L+T G+ P N
Sbjct: 31 DE---LELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPEN 72
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 36.1 bits (84), Expect = 4e-04
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
E L + GD I ++E E WWKG IG FP N
Sbjct: 19 QENEDLEMRPGDIITLLEDSNE-DWWKG----KIQDRIGFFPAN 57
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 36.1 bits (84), Expect = 4e-04
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+ DE + GD ++ + E W NL T G+ ++++ +
Sbjct: 20 PDTDE---ISFLKGDMFIVHN-ELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 36.2 bits (84), Expect = 4e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ +L I GD I + D E WW G + G FP N
Sbjct: 18 NRSDELTIHRGDIIRVFFKDNE-DWWYGS-IGKGQEGYFPAN 57
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 36.1 bits (84), Expect = 5e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ +L + GD I ++ E WW+G N GMFP N
Sbjct: 19 QNDDELELKVGDIIEVVGEVEE-GWWEG----VLNGKTGMFPSN 57
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 36.2 bits (84), Expect = 5e-04
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 38 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFN--IGMFPRN 79
+ G L AGD+I +I D WW+G G+FP N
Sbjct: 29 QQPGDLNFQAGDRITVISKTDSHFDWWEG----KLRGQTGIFPAN 69
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 35.6 bits (83), Expect = 5e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ +L I G+ I I + WW+G N G+FP N
Sbjct: 14 HDDELTISVGEIITNIRKEDG-GWWEG----QINGRRGLFPDN 51
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 38.6 bits (88), Expect = 5e-04
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E +L AGD++ +E + E W KG+ L +G++P N
Sbjct: 440 QEHDELSFKAGDELTKMEDEDEQGWCKGR-LDNGQVGLYPAN 480
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 37.8 bits (87), Expect = 5e-04
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E L + G+++ I+ WW+ +N G+ P N
Sbjct: 131 RETDLPFEQGERLEILS-KTNQDWWEARNALG-TTGLVPAN 169
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 35.7 bits (83), Expect = 6e-04
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ + +L AG + E W +G T N G+ P N
Sbjct: 22 EHDSELSFTAGTVFDNVHPSQEPGWLEG----TLNGKTGLIPEN 61
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 37.0 bits (85), Expect = 7e-04
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPMR 85
+ +L + GD I I+ + WW+G IG FP N ++
Sbjct: 18 DRSELSLKEGDIIKILNKKGQQGWWRG----EIYGRIGWFPSNYVEEDY 62
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 35.4 bits (82), Expect = 7e-04
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
++ L ++ G+ + + + + W+G N G FP
Sbjct: 20 YDKTALALEVGELVKVTKINVS-GQWEG----ECNGKRGHFPFT 58
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 35.4 bits (82), Expect = 7e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 38 DEEGKLYIDAGDQIVIIE----GDPECHWWKGQNLSTFNIGMFPRN 79
+ E ++ + GD + I+ + WWK + + NIG P N
Sbjct: 20 NPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG-NIGYIPYN 64
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 35.3 bits (82), Expect = 8e-04
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+L G I + +P WWKG T FP N
Sbjct: 19 KRSDELTFCRGALIHNVSKEPG-GWWKGD-YGTRIQQYFPSN 58
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 35.2 bits (82), Expect = 8e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+LY + GD I I + +WWKG T G+ P N
Sbjct: 15 RTPDELYFEEGDIIYITDMSDT-NWWKG----TSKGRTGLIPSN 53
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 35.3 bits (82), Expect = 8e-04
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
E +L + GD I I E E WW G T N +G+FP N
Sbjct: 19 QNEDELELKVGDIIDINEEVEE-GWWSG----TLNNKLGLFPSN 57
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 35.3 bits (82), Expect = 9e-04
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
E +L + GD I I E E WW G T N +G+FP N
Sbjct: 13 QNEDELELKVGDIIDINEEVEE-GWWSG----TLNNKLGLFPSN 51
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 35.6 bits (82), Expect = 9e-04
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECH----WWKGQNLSTFNIGMFPRN 79
+ +L + GD++ ++ D WW GQ L + +G+FP N
Sbjct: 42 GDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQ-LPSGRVGVFPSN 85
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 35.5 bits (82), Expect = 0.001
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E+ +L G+ I++++ D + +WWKG+N IG+FP N
Sbjct: 30 EDNELTFKHGEIIIVLD-DSDANWWKGENHR--GIGLFPSN 67
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ ++ D D I IE + WW+G G+FP N
Sbjct: 29 AGDDEISFDPDDIITNIEMIDD-GWWRG----VCKGRYGLFPAN 67
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 35.1 bits (81), Expect = 0.001
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPL 96
++ + GD + ++ WWK + G P + + ++ L
Sbjct: 12 GGREVTMKKGDILTLLN-STNKDWWKVEVND--RQGFVPAAYVKKLDSGTGKELVLAL 66
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ L + GD I II P W G N +G F
Sbjct: 23 YDTDSLKLKKGDIIDIISKPPM-GTWMG----LLNNKVGTFKFI 61
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 35.1 bits (81), Expect = 0.001
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN---IMDPMRRKQPDDIS 93
++ + GD + ++ WWK N G P +DP + +++
Sbjct: 15 SPREVTMKKGDILTLLN-STNKDWWKV----EVNDRQGFVPAAYVKKLDPAQSASRENLG 69
Query: 94 RP 95
P
Sbjct: 70 GP 71
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 34.9 bits (81), Expect = 0.001
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+E +L G++I+I+ WW G+ G P N +
Sbjct: 19 TDETQLSFLRGEKILILRQTTA-DWWWGE--RAGCCGYIPANHVGKH 62
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 35.5 bits (82), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ +L + GD I ++ E WW+G N GMFP N
Sbjct: 30 QNDDELELKVGDIIEVVGEVEE-GWWEG----VLNGKTGMFPSN 68
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 35.0 bits (81), Expect = 0.001
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ +L GD + ++ + + +W+K N G P+N
Sbjct: 22 ADDELSFKRGDILKVLNEECDQNWYKA----ELNGKDGFIPKN 60
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 35.0 bits (81), Expect = 0.001
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPMRRKQP 89
+ L D I I D E W+ G N G FP + ++ + P
Sbjct: 22 SDTSLLPFKRNDIITITFKDQENKWFMG----QLNGKEGSFPVDHVEILLSDVP 71
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ ++ D D I IE + WW+G G+FP N
Sbjct: 21 AGDDEISFDPDDIITNIEMIDDG-WWRG----VCKGRYGLFPAN 59
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 34.2 bits (79), Expect = 0.002
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 41 GKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPL 96
++ + GD + ++ + WWK + G P + + ++ L
Sbjct: 4 REVTMKKGDILTLLNSTNK-DWWKVEVND--RQGFVPAAYVKKLDSGTGKELVLAL 56
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN---IMDPMRRKQPDDI 92
++ + GD + ++ WWK + G P +DP + +++
Sbjct: 18 SPREVTMKKGDILTLLN-STNKDWWKVE--VNDRQGFVPAAYVKKLDPAQSASRENL 71
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 34.5 bits (80), Expect = 0.002
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+L + GD + I + + +W +G++ +G+FP N
Sbjct: 14 SPKELTLQKGDIVYIHKEVDK-NWLEGEHHG--RLGIFPAN 51
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 35.7 bits (82), Expect = 0.002
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNL-STFNIGMFPRN---IMDPMRRKQPDDIS 93
+ + +L + G+ + I + W+ + + G+ P + I+D M + +
Sbjct: 15 ERDDELDVSPGENLSICA-HYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDPAKYASVD 73
Query: 94 RPLRNSV 100
R V
Sbjct: 74 TYDREQV 80
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 30 ATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
++ +D E +L GD I + E ++ G N G+ P N
Sbjct: 18 PRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYG----ELNGQKGLVPSN 65
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 34.8 bits (80), Expect = 0.002
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 25 PAVMKATQN-CHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
P KA Q ++ L ++ GD + + + W+G+ G+FP +
Sbjct: 16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGE--VNGRKGLFPFTHVKI 72
Query: 84 MRRKQPDDISRP 95
+ PD+
Sbjct: 73 FDPQNPDENESG 84
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 34.1 bits (79), Expect = 0.002
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ +L +A D I II+ DP WW G G+FP N
Sbjct: 17 QDTDELSFNANDIIDIIKEDPS-GWWTG----RLRGKQGLFPNN 55
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ L GD I+++ W +G +G+FP+
Sbjct: 17 TQPEDLEFQEGDIILVLS-KVNEEWLEG----ESKGKVGIFPKV 55
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 34.1 bits (79), Expect = 0.002
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+LY + GD I I + + +WWKG T G+ P N
Sbjct: 19 RTPDELYFEEGDIIYITD-MSDTNWWKG----TSKGRTGLIPSN 57
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 34.6 bits (80), Expect = 0.002
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN---IMDPMRRKQP 89
E +L + GD I + + WW+G T N G FP N + R P
Sbjct: 22 TNEDELSVCKGDIIYVTRVEEG-GWWEG----TLNGRTGWFPSNYVREIKSSERSGP 73
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+L + GD + ++ + WWK + N G P
Sbjct: 19 SPRELTVKKGDILTLLNSTNK-DWWKIE----VNGRQGFVPAA 56
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 36.5 bits (83), Expect = 0.002
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISR 94
++ L G+ +VIIE PE WW +N +GM P ++ + R P
Sbjct: 134 FPGNDAEDLPFKKGEILVIIE-KPEEQWWSARN-KDGRVGMIPVPYVEKLVRSSPHGKHG 191
Query: 95 PLRNSVIHTGHGDPWGKSWGSPSHIDPMYLNNPMDPPD 132
++ + + + + +
Sbjct: 192 NRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITP 229
Score = 31.1 bits (69), Expect = 0.12
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
++ L ++ GD + + + W+G+ G+FP + + PD+
Sbjct: 251 YDKTALALEVGDIVKVTRMNIN-GQWEGE--VNGRKGLFPFTHVKIFDPQNPDE 301
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 34.7 bits (80), Expect = 0.002
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ E +L G I ++ D WW+G N G+FP N
Sbjct: 46 NNEDELSFSKGQLINVMNKDDP-DWWQG----EINGVTGLFPSN 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.002
Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 55/193 (28%)
Query: 4 TKNPAERPK-FSTLKDCLYRLTPAV------MKATQNCHEIDEEGK--LYIDA-GDQIVI 53
K R + + L+ L L PA + + GK + +D V
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---------GKTWVALDVCLSYKVQ 177
Query: 54 IEGDPECHWWK-GQNLSTFNIGMFPRNI---MDPMRRKQPDDISRP----------LRNS 99
+ D + W S + + + +DP + D S LR
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 100 VIHTGHG-------DPWGKSWGSPSHIDPMYLNNPMDPPDILGLTTQGSQN----GGATV 148
+ + + + + L+ IL LTT+ Q AT
Sbjct: 238 LKSKPYENCLLVLLNVQ-----NAKAWNAFNLSCK-----IL-LTTRFKQVTDFLSAATT 286
Query: 149 AHRSTERRKRKMT 161
H S + +T
Sbjct: 287 THISLDHHSMTLT 299
Score = 26.7 bits (58), Expect = 4.6
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 28/80 (35%)
Query: 14 STLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGD---PE---CHWWKGQN 67
+ ++ L L PA + K++ D++ + P W +
Sbjct: 357 TIIESSLNVLEPAEYR------------KMF----DRLSVFPPSAHIPTILLSLIW--FD 398
Query: 68 LSTFNIGMFPRNIMDPMRRK 87
+ + +++ + +
Sbjct: 399 VIKSD----VMVVVNKLHKY 414
Score = 26.0 bits (56), Expect = 7.4
Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 28 MKATQNCHEIDEEGKLYIDAG--DQIVIIEGDPECHWWKGQNLSTFN-IGMFPRNIMD-- 82
+K ++ + +++D +Q + + G L+T + + I D
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQLKFYKPYICDND 538
Query: 83 PMRRKQPDDISRPLRN---SVIHTGHGD 107
P + + I L ++I + + D
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTD 566
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 33.8 bits (78), Expect = 0.003
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECH--WWKGQNLSTFN--IGMFPRN---IMDPMRRKQP 89
+ +L GD + ++E D + WW + + G+ P N I+ M K+P
Sbjct: 15 ESPDELSFRKGDIMTVLEQDTQGLDGWWLC----SLHGRQGIVPGNRLKILVGMYDKKP 69
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 35.0 bits (80), Expect = 0.003
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNI-GMFPRN 79
+L + GD + I E W++G + + G+FP++
Sbjct: 71 SGAPQLSLQIGDVVRIQETCG--DWYRGYLIKHKMLQGIFPKS 111
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.9 bits (78), Expect = 0.003
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN---IMDPMRRKQPDDI 92
++ +L ++ GD ++I E E WW G + N G FP +
Sbjct: 19 RQDDELNLEKGDIVIIHEKKEE-GWWFG----SLNGKKGHFPAAYVEELPSNAGNTATKA 73
Query: 93 SRP 95
S P
Sbjct: 74 SGP 76
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ + +L AGD I ++ + W +G T G+FP +
Sbjct: 16 NSKLELNFKAGDVIFLLSRINK-DWLEG----TVRGATGIFPLS 54
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 33.8 bits (78), Expect = 0.004
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
++ +L D I II E H W G N G FP
Sbjct: 20 DDDELGFRKNDIITIISQKDE-HCWVG----ELNGLRGWFPAK 57
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 35.4 bits (81), Expect = 0.004
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN-IMDPMRRKQPDDISRP 95
+ +L GD + ++ + + +W+K + G P+N I I R
Sbjct: 13 ADDELSFKRGDILKVLNEECDQNWYKAE--LNGKDGFIPKNYIEMKPHPWFFGKIPRA 68
Score = 34.3 bits (78), Expect = 0.010
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E+G+L GD I +++ + +WWKG GMFPRN
Sbjct: 171 EDGELGFRRGDFIHVMDNS-DPNWWKGA--CHGQTGMFPRN 208
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 33.9 bits (78), Expect = 0.004
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
H +L AGD I +++ WW G + G FP +
Sbjct: 19 HVTMANRELAFKAGDVIKVLD-ASNKDWWWG----QIDDEEGWFPAS 60
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPM 84
+ + +L + G+ + +++ + +W FN G+ P N ++P+
Sbjct: 19 ETKEELQVMPGNIVFVLKKGND-NWATVM----FNGQKGLVPCNYLEPV 62
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 33.4 bits (77), Expect = 0.004
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
E +L + AG+ + +IE + WW G P ++
Sbjct: 20 QENSELSLQAGEVVDVIEKNESG-WWFVSTSE--EQGWVPATYLEAQ 63
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 33.5 bits (77), Expect = 0.004
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
D+E +L G I +I+ + + W++G N G+FP N
Sbjct: 29 DKEDELSFQEGAIIYVIKKNDD-GWYEG----VMNGVTGLFPGN 67
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 33.6 bits (77), Expect = 0.004
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD 90
++ ++ ++ AG ++ ++E WW + G P + + +QPD
Sbjct: 17 YQKVQDSEISFPAGVEVQVLEKQES-GWWYVRFGE--LEGWAPSHYLVLDENEQPD 69
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 34.1 bits (78), Expect = 0.004
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ E +L + AG + + E +++G+ L G+ P N
Sbjct: 35 NPEAELPLTAGKYLYVYGDMDEDGFYEGELLDG-QRGLVPSN 75
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 33.4 bits (77), Expect = 0.005
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 38 DEEGKLYIDAGDQIVIIEGDP--ECHWWKGQNLSTFN--IGMFPRN 79
D +L GD + I+E WWK + G+ P N
Sbjct: 19 DCSDELAFSRGDILTILEQHVPESEGWWKC----LLHGRQGLAPAN 60
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 32.9 bits (76), Expect = 0.005
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+L GD I++ + DP WW+G N G P N
Sbjct: 15 QTGDELTFKEGDTIIVHQKDPA-GWWEG----ELNGKRGWVPAN 53
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 33.5 bits (77), Expect = 0.005
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ + GD + ++ WWK + G P
Sbjct: 30 SPREVTMKKGDILTLLN-STNKDWWKVE--VNDRQGFVPAA 67
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 34.0 bits (78), Expect = 0.006
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNL-STFNIGMFPRN---IMDPMRRK-QPDDI 92
++ +L G+ + I C W+ + + G+ P I+D +D+
Sbjct: 17 EKADELTTYVGENLFICA-HHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATGYATGNDV 75
Query: 93 SRPLRNSVI 101
+++ +
Sbjct: 76 IEDIKSVNL 84
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 33.0 bits (76), Expect = 0.006
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDP-ECHWWKGQNLSTFN--IGMFPRN 79
E +L G+ I +I + E WWKG N G+FP N
Sbjct: 18 TNEDELTFREGEIIHLISKETGEAGWWKG----ELNGKEGVFPDN 58
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 33.1 bits (76), Expect = 0.006
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+L GD + + E WW+G N G+ P
Sbjct: 23 TAQELSFRRGDVLRLHERASS-DWWRG----EHNGMRGLIPHK 60
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 33.0 bits (76), Expect = 0.006
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+ +G+L GD I + E +W++G + G FP N
Sbjct: 15 ENQGELGFKEGDIITLTNQIDE-NWYEG----MIHGESGFFPIN 53
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 33.1 bits (76), Expect = 0.006
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 38 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFN--IGMFPRN 79
+ +L + GD + I + WWKG N IG FP
Sbjct: 19 RDMRELSLREGDVVRIYSRIGGDQGWWKG----ETNGRIGWFPST 59
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 35.1 bits (81), Expect = 0.006
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD-----IS 93
L GDQ+V++E WWK ++L+T G P N + + + ++ IS
Sbjct: 21 HHEDLSFQKGDQMVVLEESG--EWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGIS 78
Query: 94 R 94
R
Sbjct: 79 R 79
Score = 25.8 bits (57), Expect = 8.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
P ERP F ++ L
Sbjct: 424 NRPEERPTFEYIQSVLDDF 442
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 33.1 bits (76), Expect = 0.007
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDP-ECHWWKGQNLSTFNIGMFPRN 79
+L + A + I + + W G+ + G P
Sbjct: 29 ANSTELSLLADEVITVFSVVGMDSDWLMGERGNQ--KGKVPIT 69
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 32.7 bits (75), Expect = 0.009
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ L D I ++E +WW G+ G FP++
Sbjct: 22 KKDNHLNFSKHDIITVLEQQE--NWWFGEVHG--GRGWFPKS 59
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 32.9 bits (75), Expect = 0.010
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 20 LYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L+ P M + E +E L G I + +++G+ + +G+ P N
Sbjct: 23 LFDYDPLTMSPNPDAAE-EE---LPFKEGQIIKVYGDKDADGFYRGE--TCARLGLIPCN 76
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 33.9 bits (77), Expect = 0.011
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN-IGMFPRN 79
+L + GD + I E W++G + G+FP++
Sbjct: 29 SGAPQLSLQIGDVVRIQETCG--DWYRGYLIKHKMLQGIFPKS 69
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 32.3 bits (74), Expect = 0.011
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRN 79
+L G +++ + + WW+G N G+ P
Sbjct: 21 RTARELSFKKGASLLLYQRASD-DWWEG----RHNGIDGLIPHQ 59
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 32.0 bits (73), Expect = 0.013
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 30 ATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN--IGMFPRNIMDPM 84
+G+L + AGD +++ + ++ G+ G+ P +++D M
Sbjct: 18 PGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE----LGGHRGLVPAHLLDHM 70
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 33.7 bits (77), Expect = 0.019
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD---- 90
+E E L G+++ I+ + E WW +LST G P N + P Q +
Sbjct: 94 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYF 152
Query: 91 -DISR 94
I+R
Sbjct: 153 GKITR 157
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 33.0 bits (75), Expect = 0.024
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ + GD + ++E WW Q G P +
Sbjct: 24 SGSEMALSTGDVVEVVEKSES-GWWFCQM--KAKRGWIPAS 61
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 32.9 bits (74), Expect = 0.025
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRN 98
+E L GD + I + PE WW ++ GM P ++ R + N
Sbjct: 149 DEEDLPFKKGDILRIRD-KPEEQWWNAEDSEG-KRGMIPVPYVEKYRPASASVSALIGGN 206
Query: 99 S 99
Sbjct: 207 Q 207
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 33.3 bits (75), Expect = 0.028
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 1 MKATKNPAERPKFSTLKDCLYRLT-PAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPE 59
+ T +P F +L D Y A + H+ ++ ++ GD I+ + G+
Sbjct: 416 IMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGD-IIGVAGNHW 474
Query: 60 CHWWKGQNLSTFNIGMFPRN 79
+ KG N G++P
Sbjct: 475 DGYSKGVNRKLGRTGLYPSY 494
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 32.4 bits (74), Expect = 0.049
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD--- 91
+E E L G+++ I+ + E WW +LST G P N + P Q ++
Sbjct: 11 YESRTETDLSFKKGERLQIVN-NTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYF 69
Query: 92 --ISR 94
I+R
Sbjct: 70 GKITR 74
Score = 25.5 bits (56), Expect = 10.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 5 KNPAERPKFSTLKDCL 20
K P ERP F L+ L
Sbjct: 420 KEPEERPTFEYLQAFL 435
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 32.2 bits (74), Expect = 0.052
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 5 KNPAERPKFSTLKDCLYRLTPAVMKA 30
P +RP F L+D L P M+A
Sbjct: 264 HKPEDRPTFVALRDFLLEAQPTDMRA 289
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 31.5 bits (70), Expect = 0.089
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRN 98
+E L GD + I + E WW ++ S GM P ++ R + N
Sbjct: 147 DEEDLPFKKGDILRIRDKPEE-QWWNAED-SEGKRGMIPVPYVEKYRPASASVSALIGGN 204
Query: 99 S 99
Sbjct: 205 Q 205
Score = 31.5 bits (70), Expect = 0.11
Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
++ L ++ G+ + + + + W+G+ G FP + + ++ P++
Sbjct: 251 YDKTALALEVGELVKVTKINVS-GQWEGE--CNGKRGHFPFTHVRLLDQQNPEE 301
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 29.6 bits (67), Expect = 0.091
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISR 94
E +L I +E WW+G FP N ++ M P+ I R
Sbjct: 18 QREDELTFIKSAIIQNVEKQEG-GWWRGD-YGGKKQLWFPSNYVEEM--VNPEGIHR 70
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 30.8 bits (70), Expect = 0.16
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E L GD + I+ + +W+K +N G+ P N
Sbjct: 24 AEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPAN 63
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 29.6 bits (66), Expect = 0.17
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 17/65 (26%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECH--------------WWKGQNLSTFNIGMFPRN---I 80
+ L + GD +V+ + W G N T G FP
Sbjct: 23 ERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEF 82
Query: 81 MDPMR 85
+ P+
Sbjct: 83 LGPVA 87
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 28.3 bits (64), Expect = 0.21
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E +L I +E WW+G FP N
Sbjct: 15 QREDELTFTKSAIIQNVEKQDGG-WWRGD-YGGKKQLWFPSN 54
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 28.1 bits (63), Expect = 0.34
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQ 66
++ + GD + ++ WWK +
Sbjct: 34 SPREVTMKKGDILTLLN-STNKDWWKVE 60
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 28.1 bits (62), Expect = 0.48
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 19 CLYRLTPAVMKATQNCHEID-EEGKLYI---DAGDQIVIIEGDPECH----WWKGQNLST 70
LY + +ID G + + + +G W G N +T
Sbjct: 10 ALYDYKK------EREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETT 63
Query: 71 FNIGMFPRNIMDPMRRKQ 88
G FP ++ + RK+
Sbjct: 64 GERGDFPGTYVEYIGRKK 81
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 29.4 bits (67), Expect = 0.54
Identities = 5/54 (9%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 1 MKATKNPA--ERPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIV 52
M + + ++ P +++ + D +G+ +D +
Sbjct: 1 MSLNDDATFWRNARHHLVR-YGGTFEPMIIERAKGSFVYDADGRAILDFTSGQM 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.56
Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 52/150 (34%)
Query: 3 ATKNPAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHW 62
K P ++ S L +A + +L G Q G+ + +
Sbjct: 132 MAKRPFDKKSNSAL-----------FRAVG-----EGNAQLVAIFGGQ-----GNTD-DY 169
Query: 63 WKG-QNL-STFNIGMFPRNIMDPMRRKQPDDISRPLRNSVIHTGHG-DPWGKSWGSPSHI 119
++ ++L T++ + +++ + I L + T G + W
Sbjct: 170 FEELRDLYQTYH--VLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNI--LEW------ 218
Query: 120 DPMYLNNPMDPPD------------ILGLT 137
L NP + PD ++G+
Sbjct: 219 ----LENPSNTPDKDYLLSIPISCPLIGVI 244
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 28.4 bits (64), Expect = 1.1
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 5 KNPAERPKFSTLKDCLYRLTPAVMKATQNCHE 36
+RP F T++ + ++ + H
Sbjct: 252 YKWEDRPDFLTVEQRMRACYYSLASKVEGHHH 283
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2;
1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A*
1szk_A* 1szu_A* 1szs_A*
Length = 426
Score = 27.5 bits (62), Expect = 1.9
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 1 MKATKNPAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYID 46
M + K +R + + + ++ P +NC D EG+ Y+D
Sbjct: 1 MNSNKELMQR-RSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLD 45
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 27.6 bits (62), Expect = 2.1
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 19 CLYRLTPAVMKATQNCHEIDEEGKLYID 46
+ P +D +G +ID
Sbjct: 41 GVGSTAPVYAVDADGGVIVDADGNSFID 68
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 27.3 bits (61), Expect = 2.4
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 5 KNPAERPKFSTLKDCLYRL--TPAVMKATQN 33
K+ RPKF + L +L P +K +
Sbjct: 289 KDRNNRPKFEQIVSILDKLIRNPGSLKIITS 319
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 27.3 bits (61), Expect = 2.6
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 5 KNPAERPKFSTLKDCLYRL--TPAVMKATQN 33
K+ A+RP+FS + L L +P ++AT
Sbjct: 293 KDRAQRPRFSQIVSVLDALIRSPESLRATAT 323
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 27.0 bits (60), Expect = 2.8
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ L I G+++ ++ + W + Q + G P N
Sbjct: 52 FVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKN--GQGWVPSN 94
Score = 25.9 bits (57), Expect = 7.4
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 5 KNPAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEE 40
NP++RP F+ + + + + E+++E
Sbjct: 458 WNPSDRPSFAEIHQAFETM----FQESSISDEVEKE 489
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 27.1 bits (61), Expect = 2.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 21 YRLTPAVMKATQNCHEIDEEGKLYID 46
R P + + I+E G+ ID
Sbjct: 22 LRFFPLAISGGRGARLIEENGRELID 47
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 26.8 bits (60), Expect = 2.9
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 5 KNPAERPKFSTLKDCLYRLTPAVMKATQNCH 35
+ RP F+ ++ L V+ + H
Sbjct: 259 YDVENRPGFAAVELRLRNYYYDVVNEGHHHH 289
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A*
3q8n_A
Length = 451
Score = 27.2 bits (61), Expect = 2.9
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 19 CLYRLTPAVMKATQNCHEIDEEGKLYID 46
+ P D +G ID
Sbjct: 38 GVGTTMPVYAVRAGGGIVEDVDGNRLID 65
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 26.8 bits (60), Expect = 3.5
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+ RPKF L ++
Sbjct: 258 IDADSRPKFRELIIEFSKM 276
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 26.8 bits (59), Expect = 3.7
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 35 HEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQP--DDI 92
H ++ +L AGD I +++ WW G+ G FP + + + DD
Sbjct: 39 HVTMDDQELGFKAGDVIEVMDAT-NREWWWGRVADG--EGWFPASFVRLRVNQDEPADDD 95
Query: 93 SRPLRNSVIHTGHGDP 108
+ NS G +
Sbjct: 96 APLAGNSGAEDGGAEA 111
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 26.9 bits (60), Expect = 3.8
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 21 YRLTPAVMKATQNCHEIDEEGKLYIDAGDQI 51
+ ++ + +D +G +D QI
Sbjct: 42 AVHFFCNYEESRGNYLVDVDGNRMLDLYSQI 72
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 26.3 bits (59), Expect = 4.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 24 TPAVMKATQNCHEIDEEGKLYID 46
P M+ + D +G YID
Sbjct: 35 NPLFMERGKGSKVYDIDGNEYID 57
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 26.4 bits (59), Expect = 4.6
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 5 KNPAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEE 40
NP++RP F+ + + + + E+++E
Sbjct: 251 WNPSDRPSFAEIHQAFETM----FQESSISDEVEKE 282
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 26.3 bits (59), Expect = 5.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 24 TPAVMKATQNCHEIDEEGKLYID 46
TP + + + D +G Y+D
Sbjct: 34 TPPFLVRGEGAYVWDADGNRYLD 56
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases,
csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 26.3 bits (59), Expect = 5.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 24 TPAVMKATQNCHEIDEEGKLYID 46
P ++ + D +GK YID
Sbjct: 35 IPLFIERADGAYLFDVDGKAYID 57
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 26.3 bits (59), Expect = 5.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 24 TPAVMKATQNCHEIDEEGKLYID 46
P V ++ + D +G YID
Sbjct: 34 QPIVFDRVKDAYAWDVDGNRYID 56
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 25.9 bits (58), Expect = 6.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 24 TPAVMKATQNCHEIDEEGKLYID 46
P M+ + + D +G YID
Sbjct: 37 APIAMERGKGAYFWDVDGNKYID 59
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 26.1 bits (58), Expect = 6.3
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 5 KNPAERPKFSTLKDCLYRL--TPAVMKATQNCHEIDEE 40
+P +RP F+ L+ L + +V+ +Q+ I+ E
Sbjct: 278 ADPKQRPSFTCLRMELENILGHLSVLSTSQDPLYINIE 315
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 26.0 bits (56), Expect = 6.5
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 79 NIMDPMRRKQPDDISRPLRNSVIHTGHGDPW-GKSWGSPSHIDPMYLNNPMDPPDILGLT 137
N R+ D+ +PL + ++ + H PS + Y+ L L
Sbjct: 153 NAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTE-AYIRALCKGCRCLELD 211
Query: 138 TQGSQNGGATVAHRST 153
N + H T
Sbjct: 212 CWDGPNQEPIIYHGYT 227
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
periplasmic molecular chaperone, membrane protein
folding, GRAM negative bacteria; 3.00A {Escherichia
coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Length = 408
Score = 26.2 bits (57), Expect = 6.5
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 64 KGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRNS 99
+G +L +F D + R +S P+ +S
Sbjct: 317 QGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSS 352
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 26.1 bits (58), Expect = 6.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 5 KNPAERPKFSTLKDCLYRLTPAVMKATQNCHEIDEE 40
P++RP F L + L R+ + T N +D
Sbjct: 298 AVPSQRPTFKQLVEDLDRI----LTLTTNEEYLDLS 329
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 26.0 bits (58), Expect = 6.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+ P +RP F L + L
Sbjct: 244 ELPEKRPTFQQLLSSIEPL 262
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 25.7 bits (57), Expect = 7.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+ RP F L + R+
Sbjct: 256 IDENIRPTFKELANEFTRM 274
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 25.6 bits (57), Expect = 7.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+ A RP F L++ L +
Sbjct: 253 LDAAMRPSFLQLREQLEHI 271
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 25.9 bits (58), Expect = 7.8
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 24 TPAVMKATQNCHEIDEEGKLYID 46
P +K + + +G +D
Sbjct: 38 YPFYVKRGEGAYLYTVDGARIVD 60
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 25.7 bits (57), Expect = 7.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 5 KNPAERPKFSTLKDCLYRLTPA 26
+P +RP FS L+ L +L +
Sbjct: 288 TDPLDRPTFSVLRLQLEKLLES 309
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 25.6 bits (57), Expect = 8.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+ P +RP FS L L +
Sbjct: 244 ERPEDRPAFSRLLRQLAEI 262
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 25.7 bits (57), Expect = 8.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+P+ RP+F+ LK L +
Sbjct: 256 YDPSRRPRFTELKAQLSTI 274
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron,
metal-binding, protein biosynthesis; HET: NVC; 1.56A
{Mycobacterium tuberculosis}
Length = 197
Score = 25.2 bits (56), Expect = 8.4
Identities = 6/14 (42%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 34 CHEIDE-EGKLYID 46
HE +G LY+D
Sbjct: 147 QHETGHLDGFLYLD 160
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 25.6 bits (57), Expect = 8.4
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+ P +RP F L+ L
Sbjct: 249 ERPEDRPTFDYLRSVLEDF 267
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 25.7 bits (55), Expect = 8.4
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 32 QNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMF-PRN-IMDPMRRKQP 89
+E+ A I E + + ++ F+ + N I+
Sbjct: 256 PRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLS 315
Query: 90 DDISRPLRNSVIHTGHGDPW-GKSWGSPSHIDP 121
D+++PL I++ H S ++
Sbjct: 316 TDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEM 348
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 25.6 bits (57), Expect = 8.8
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+ ERP F L + +
Sbjct: 260 EKADERPTFKILLSNILDV 278
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 25.4 bits (56), Expect = 8.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 5 KNPAERPKFSTLKDCLYRLT--PAVMKATQN 33
+ A RPKF+ + L +L P +K +
Sbjct: 289 QERARRPKFADIVSILDKLIRAPDSLKTLAD 319
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron,
metal-bindi mitochondrion, protein biosynthesis, transit
peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Length = 183
Score = 25.3 bits (56), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 35 HEIDE-EGKLYID 46
HE+D +G L+ID
Sbjct: 154 HEMDHLQGCLFID 166
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase;
2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB:
1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Length = 177
Score = 25.2 bits (56), Expect = 9.1
Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 35 HEIDE-EGKLYID 46
HE D +G LY+D
Sbjct: 143 HECDHLQGILYVD 155
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 25.6 bits (56), Expect = 9.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 5 KNPAERPKFSTLKDCLYRL 23
+P+ RP+F+ LK L +
Sbjct: 631 YDPSRRPRFTELKAQLSTI 649
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.433
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,598,749
Number of extensions: 151434
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 232
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)