RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2788
(161 letters)
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 49.1 bits (117), Expect = 2e-09
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 8 AERPKFSTLKDCLYRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQN 67
+ PK ++ Y P L ++ GD + + + + E +WW+G+N
Sbjct: 2 SHMPKMEVFQE--YYGIPP--------PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRN 51
Query: 68 LSTFNIGMFPRNIMDPM 84
+T +G FP N + P
Sbjct: 52 TATNEVGWFPCNRVHPY 68
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 41.3 bits (97), Expect = 1e-06
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
E L G+++ I+ WW +LST G P N + P
Sbjct: 14 RTETDLSFKKGERLQIVNNTEG-DWWLAHSLSTGQTGYIPSNYVAPS 59
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 41.2 bits (97), Expect = 1e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
E L G++ I+ WW+ ++L+T G P N + P+
Sbjct: 12 ITEDDLSFHKGEKFQILNSSEG-DWWEARSLTTGETGYIPSNYVAPV 57
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 40.1 bits (94), Expect = 3e-06
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ ++ GD I+ ++ E W G T GM P N
Sbjct: 15 ADADEVSFKDGDAIINVQAIDEG-WMYGTVQRTGRTGMLPAN 55
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 40.1 bits (94), Expect = 4e-06
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E+ +L D+I+ IE + WW G+ + G+FP N
Sbjct: 12 AEDNELTFVENDKIINIEFVDD-DWWLGELEKDGSKGLFPSN 52
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 38.6 bits (90), Expect = 2e-05
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPD 90
E L ++ G + +I+E + HWW+ ++ + G P N + + D
Sbjct: 14 TEAHDLRLERGQEYIILE-KNDLHWWRARDKYG-SEGYIPSNYVTGKKSNNLD 64
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 38.2 bits (89), Expect = 2e-05
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ +L GD + ++ + + +W+K + G P+N
Sbjct: 12 TADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKN 51
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human
(Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 37.9 bits (88), Expect = 3e-05
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L GDQ+V++E E WWK ++L+T G P N
Sbjct: 16 IHHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSN 55
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 37.9 bits (88), Expect = 3e-05
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+G L + G+Q+ I+E E WWK Q+L+T G P N
Sbjct: 18 SHDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFN 57
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 37.4 bits (87), Expect = 3e-05
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+ L I G+++ ++ + W + Q G P N + P+
Sbjct: 12 SGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSNYITPV 56
>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 56
Score = 36.8 bits (85), Expect = 6e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ ++ I GD+I ++ D W K N +T G+ P
Sbjct: 11 KDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTT 52
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 37.1 bits (86), Expect = 6e-05
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
L + GD+ I+E + WW+ ++ + G P N
Sbjct: 20 MNANDLQLRKGDEYFILE-ESNLPWWRARDKNG-QEGYIPSN 59
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN
cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 37.1 bits (86), Expect = 6e-05
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ + L GD + ++ + + W G++ +T G FP +
Sbjct: 20 NNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSS 61
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 36.8 bits (85), Expect = 9e-05
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E L GD + I+ + +W+K +N G+ P N
Sbjct: 18 TAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPAN 58
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 36.2 bits (84), Expect = 9e-05
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++E L GD + I + E WW ++ GM P
Sbjct: 13 NDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEG-KRGMIPVP 52
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 36.2 bits (84), Expect = 1e-04
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
EE +L +G+ + +++ WW G+ +G+FP N + PM
Sbjct: 13 LEEDELGFRSGEVVEVLD-SSNPSWWTGRL--HNKLGLFPANYVAPM 56
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 35.8 bits (83), Expect = 1e-04
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ + GD + ++ WWK + G P
Sbjct: 12 KSPREVTMKKGDILTLLN-STNKDWWKVEV--NDRQGFVPAA 50
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 36.0 bits (83), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPEC-HWWKGQNLSTFNIGMFPRNIMDPM 84
E +L + G+ + +IE WWK +N +G+ P+N + +
Sbjct: 18 VTEEELNFEKGETMEVIEKPENDPEWWKCKNARG-QVGLVPKNYVVVL 64
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 34.8 bits (80), Expect = 4e-04
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISR 94
E +L I +E E WW+G FP N ++ M P+ I R
Sbjct: 18 QREDELTFIKSAIIQNVE-KQEGGWWRGD-YGGKKQLWFPSNYVEEM--VNPEGIHR 70
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 35.8 bits (82), Expect = 5e-04
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRPLR 97
E ++ + G+ + +I + WW + G FP + + + R
Sbjct: 26 VEGDEVSLLEGEAVEVIHKLLD-GWWVIRK--DDVTGYFPSMYLQKSGQDVSQAQRQIKR 82
Query: 98 NS 99
+
Sbjct: 83 GA 84
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
9606]}
Length = 62
Score = 34.3 bits (79), Expect = 5e-04
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDP 83
+ L GD I+++ W +G++ +G+FP+ ++
Sbjct: 17 TQPEDLEFQEGDIILVLS-KVNEEWLEGES--KGKVGIFPKVFVED 59
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 34.4 bits (79), Expect = 6e-04
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 38 DEEGKLYIDAGDQIVIIE-GDPECHWWKGQNLSTFNIGMFPRN 79
+E G L GD I I++ D + WW G+ G+FP N
Sbjct: 13 EESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPAN 53
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 34.0 bits (78), Expect = 7e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 38 DEEGKLYIDAGDQIVIIE--GDPECHWWKGQNLSTFNIGMFPRN 79
+ +L + GD + II + E WW + G PRN
Sbjct: 16 QNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRN 57
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 34.4 bits (79), Expect = 8e-04
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRP 95
E +L + GD I + E WW+G G FP N + + + + S P
Sbjct: 22 TNEDELSVCKGDIIYVTR-VEEGGWWEGTL--NGRTGWFPSNYVREI---KSSERSGP 73
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 33.1 bits (76), Expect = 0.002
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
E+ +L G+ I +++ +WW+G+N G+FP N
Sbjct: 14 VEDNELTFKHGELITVLDDSDA-NWWQGEN--HRGTGLFPSN 52
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 32.9 bits (75), Expect = 0.002
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ L D I ++E +WW G+ G FP++
Sbjct: 22 KKDNHLNFSKHDIITVLEQQE--NWWFGEV--HGGRGWFPKS 59
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus
musculus [TaxId: 10090]}
Length = 53
Score = 32.6 bits (74), Expect = 0.003
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
++ +L + ++ +++ E HWW+ Q+ + G P +
Sbjct: 10 NDPQELALRCDEEYYLLD-SSEIHWWRVQD-KNGHEGYAPSS 49
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.5 bits (76), Expect = 0.003
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECH-WWKGQNLSTFNIGMFPRNIMDPMRRKQPDDISRP 95
++ ++GD I + E W G N G FP N ++ M + + P
Sbjct: 17 RNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVEKMPSSENEKAVSP 73
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 83
Score = 33.2 bits (75), Expect = 0.003
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 38 DEEGKLYIDAGDQIVIIEG--------------DPECHWWKGQNLSTFNIGMFPRNIMDP 83
+ E + + GD + + +G E W G N +T G FP ++
Sbjct: 15 EREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEY 74
Query: 84 MRRKQP 89
+ RK+
Sbjct: 75 IGRKKI 80
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 31.4 bits (71), Expect = 0.009
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ + +L AG + E W +G G+ P N
Sbjct: 22 EHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPEN 61
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 30.7 bits (69), Expect = 0.017
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQ---NLSTFNIGMFPRNIMDPMRRKQPD 90
+L + G I+I++ + WW+G+ G FP + + +
Sbjct: 19 SGSEQLSLAPGQLILILKKNTS-GWWQGELQARGKKRQKGWFPASHVKLLGPSSER 73
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 30.2 bits (68), Expect = 0.017
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
++ + GD + ++E WW Q G P + ++P+
Sbjct: 14 TSGSEMALSTGDVVEVVEKSESG-WWFCQM--KAKRGWIPASFLEPL 57
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 30.7 bits (69), Expect = 0.023
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRN 79
+ E +L G I ++ + WW+G+ G+FP N
Sbjct: 46 NNEDELSFSKGQLINVMN-KDDPDWWQGEI--NGVTGLFPSN 84
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 30.5 bits (68), Expect = 0.033
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 32 QNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPM 84
+ + E +L + AG + + E +++G+ L G+ P N +D +
Sbjct: 29 FDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQRGLVPSNFVDFV 80
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 59
Score = 29.5 bits (66), Expect = 0.035
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMR 85
+L + D + I++ WWK +N + + G P NI+D MR
Sbjct: 13 RNSSELSVMKDDVLEILD--DRRQWWKVRNA-SGDSGFVPNNILDIMR 57
>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 29.3 bits (65), Expect = 0.076
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 12/101 (11%)
Query: 10 RPKFSTLKDCL---YRLTPAVMKATQNCHEIDEEGKLYIDAGDQIVIIE--GDPECHWWK 64
PK + K C ++ A Q+ + + L I G + + +W
Sbjct: 3 MPKLADRKLCADQECSHPISMAVALQD-YMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWG 61
Query: 65 G------QNLSTFNIGMFPRNIMDPMRRKQPDDISRPLRNS 99
G +G FP +I+ + +P +
Sbjct: 62 GSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKVDVKTDKW 102
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 28.2 bits (62), Expect = 0.14
Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 38 DEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNI----GMFPRNIMDPM 84
+E ++ + G+ + ++ + + ++ + G P +I+ P
Sbjct: 19 LKENEICVSQGEVVQVLA-VNQQNMCLVYQPASDHSPAAEGWVPGSILAPF 68
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 27.0 bits (59), Expect = 0.51
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 39 EEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFN----IGMFPRN 79
L GD + +I+ E WW+ + + + + IG P
Sbjct: 19 LSQALSFRFGDVLHVIDAGDEE-WWQARRVHSDSETDDIGFIPSK 62
>d2gmqa1 b.122.1.11 (A:12-113) Uncharacterized protein PrgU
{Enterococcus faecalis [TaxId: 1351]}
Length = 102
Score = 26.1 bits (57), Expect = 0.98
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 32 QNCHEIDEEGKLYIDAGDQIVIIEGDPECHWWKGQNLSTFNIGMFPRNIMDPMRRKQPDD 91
+N EI L I + + +E PE + NL N+ +F I P+ R ++
Sbjct: 45 ENIQEIT---TLNIIKNGKSLALEVYPEKSIYVKPNLGRINVPVF--FIKTPINRGVFEE 99
Query: 92 I 92
I
Sbjct: 100 I 100
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 26.7 bits (58), Expect = 1.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 20 LYRLTPAVMKATQNCHEIDEEGKLYIDA 47
+ ++ P +NC D EG+ Y+D
Sbjct: 18 VGQIHPIFADRAENCRVWDVEGREYLDF 45
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 26.7 bits (58), Expect = 1.3
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 21 YRLTPAVMKATQNCHEIDEEGKLYIDA 47
P V ++ + D +G YID
Sbjct: 31 VGGQPIVFDRVKDAYAWDVDGNRYIDY 57
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 24.8 bits (54), Expect = 2.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 44 YIDAGDQIVIIEGDPECHWW 63
+ A ++ +EGD
Sbjct: 27 KVAAEQSLITVEGDKASMEV 46
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 25.1 bits (54), Expect = 4.6
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 21 YRLTPAVMKATQNCHEIDEEGKLYIDA 47
Y P V+K + D K Y D
Sbjct: 18 YDPIPVVLKRAKGVFVYDVNDKRYYDF 44
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 24.4 bits (52), Expect = 5.3
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 80 IMDPMRRKQPDDISRPLRNSVIHTGHGDPWGKSWGS 115
+ D ++ D + I T D W + W +
Sbjct: 59 MEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNA 94
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 25.1 bits (54), Expect = 5.5
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 21 YRLTPAVMKATQNCHEIDEEGKLYIDA 47
Y ++ Q D EG YID
Sbjct: 16 YNKHDLLIVRGQGARVWDAEGNEYIDC 42
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 299
Score = 24.7 bits (53), Expect = 6.0
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 5 KNPAERPKFSTLKDCLYRL--TPAVMKA 30
K+ RPKF + + L ++ P +KA
Sbjct: 272 KDRNHRPKFGQIVNTLDKMIRNPNSLKA 299
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 404
Score = 24.7 bits (53), Expect = 6.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 21 YRLTPAVMKATQNCHEIDEEGKLYIDA 47
P ++ + + D EG+ Y D
Sbjct: 20 AHPLPVALERGKGIYLWDVEGRKYFDF 46
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2,
nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 23.2 bits (50), Expect = 7.0
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 36 EIDEEGKLYIDAGDQIVIIEGDPEC 60
+I ++G+ ++ V I G P
Sbjct: 37 QISKKGEFLPGTRNRRVTITGSPAA 61
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 24.4 bits (52), Expect = 7.2
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 4 TKNPAERPKFSTLKDCL 20
+ ++P +S L+
Sbjct: 257 SLRFDDKPDYSYLRQLF 273
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 24.6 bits (52), Expect = 7.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 22 RLTPAVMKATQNCHEIDEEGKLYIDA 47
P +++ + D +G+ +D
Sbjct: 21 TFEPMIIERAKGSFVYDADGRAILDF 46
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 24.3 bits (52), Expect = 9.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 5 KNPAERPKFSTLKDCL 20
P +RP F L+D L
Sbjct: 254 HKPEDRPTFVALRDFL 269
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 24.2 bits (51), Expect = 9.6
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 21 YRLTPAVMKATQNCHEIDEEGKLYIDA 47
+ ++ + +D +G +D
Sbjct: 32 AVHFFCNYEESRGNYLVDVDGNRMLDL 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.433
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 670,574
Number of extensions: 31754
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 62
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)