BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2792
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
DG +IVYS+ DK SF++ Q + R + + P++L+ANK+DL HLR+V G+ A
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 150
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLL 104
KYN + E S D + + F L+
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
DG +IVYS+ DK SF++ Q + R + + P++L+ANK+DL HLR+V G+ A
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 150
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLL 104
KYN + E S D + + F L+
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
DG +IVYS+ DK SF++ Q + R + + P++L+ANK+DL HLR+V G+ A
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 150
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLL 104
KYN + E S D + + F L+
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
DG +IVYS+ DK SF++ Q + R + + P++L+ANK+DL HLR+V G+ A
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 145
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLL 104
KYN + E S D + + F L+
Sbjct: 146 TKYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ DK SF+ A L+R R ++VP++L+ NK DL R+V GR+
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 77 AVKYNCTFHEVSVA--DNSPAIYQA 99
AV ++C F E S A N A+++
Sbjct: 138 AVVFDCKFIETSAALHHNVQALFEG 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ DK SF+ A L+R R ++VP++L+ NK DL R+V GR+
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 77 AVKYNCTFHEVSVA--DNSPAIYQA 99
AV ++C F E S A N A+++
Sbjct: 138 AVVFDCKFIETSAALHHNVQALFEG 162
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ DK SF+ A L+R R ++VP++L+ NK DL R+V GR+
Sbjct: 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132
Query: 77 AVKYNCTFHEVSVA--DNSPAIYQA 99
AV ++C F E S A N A+++
Sbjct: 133 AVVFDCKFIETSAALHHNVQALFEG 157
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ D+ SF+ A L+R R ++P++L+ NK DL R+V S GR+
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 77 AVKYNCTFHEVSVA 90
AV ++C F E S A
Sbjct: 141 AVVFDCKFIETSAA 154
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ D+ SF+ A L+R R ++P++L+ NK DL R+V S GR+
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 140
Query: 77 AVKYNCTFHEVSVA 90
AV ++C F E S A
Sbjct: 141 AVVFDCKFIETSAA 154
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ D+ SF+ A L+R R ++P++L+ NK DL R+V S GR+
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 171
Query: 77 AVKYNCTFHEVSVA 90
AV ++C F E S A
Sbjct: 172 AVVFDCKFIETSAA 185
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
W +G ++VY + D+ SF+ + L + NV ++L+ NK DL+H RQV G
Sbjct: 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK 157
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A + C F+E S I + F L E R
Sbjct: 158 LATELACAFYECSACTGEGNITEIFYELCREVR 190
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ D+ SF+ A L+R R ++P++L+ NK DL R+V S GR+
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 77 AVKYNCTFHEVSVA 90
AV ++ F E S A
Sbjct: 141 AVVFDXKFIETSAA 154
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 21 IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
+IVYS+ D+ SF+ A L+R ++VP++L+ NK DL R+V GR+ AV +
Sbjct: 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF 141
Query: 81 NCTFHEVS 88
+C F E S
Sbjct: 142 DCKFIETS 149
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V R+ A
Sbjct: 80 GALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 138
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
K N +F E S D S + +AF ++LTE
Sbjct: 139 KNNLSFIETSALD-STNVEEAFKNILTE 165
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G IIVY + D++SFD +Q + R+ A+ NV +L+ NK DL R V GR
Sbjct: 82 AHGIIIVYDVTDRDSFDNVKQWIQEIDRY-AMENVNKLLVGNKCDLVSKRVVTSDEGREL 140
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A + F E S A N+ + QAF
Sbjct: 141 ADSHGIKFIETS-AKNAYNVEQAF 163
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G ++VY + +++SFD + ++N++ H A +V M+L NK D+ RQV +
Sbjct: 73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSK 131
Query: 71 SLGRSTAVKYNCTFHEVSVADN 92
G A+ Y F E S N
Sbjct: 132 ERGEKLALDYGIKFMETSAKAN 153
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++SFD + ++N++ H A +V M+L NK D+ RQV + G
Sbjct: 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL 139
Query: 77 AVKYNCTFHEVSVADN 92
A+ Y F E S N
Sbjct: 140 ALDYGIKFMETSAKAN 155
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V R+
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K +F E S D S + AF +LTE
Sbjct: 161 AEKNGLSFIETSALD-STNVEAAFQTILTE 189
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +E+F++ S L++ ++H + N V +ML+ NK DLE R V G +
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVKREEGEAF 152
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A ++ F E S A + + +AF
Sbjct: 153 AREHGLIFMETS-AKTACNVEEAF 175
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V R+
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K +F E S D S + AF +LTE
Sbjct: 161 AEKNGLSFIETSALD-STNVEAAFQTILTE 189
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V R+
Sbjct: 93 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 151
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K +F E S D S + AF +LTE
Sbjct: 152 AEKNGLSFIETSALD-STNVEAAFQTILTE 180
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE--SRGGP 111
A F E S A N+ + Q+F + E R GP
Sbjct: 148 ADSLGIPFLETS-AKNATNVEQSFMTMAAEIKKRMGP 183
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
I+VY + +++SF+ +Q++ R +V + L+ NK DL LR+V G A
Sbjct: 76 AAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEGXQKAQ 134
Query: 79 KYNCTFHEVS 88
+YN FHE S
Sbjct: 135 EYNTXFHETS 144
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRH--RAVNNVPVMLLANKLDLEHLRQVDESLG 73
WA ++VYS+ ++SFD + S L+ L H ++P +LL NKLD+ RQV ++ G
Sbjct: 91 WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+ A ++ C F EVS + + F + E+R
Sbjct: 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V R+
Sbjct: 81 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 139
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K +F E S D S + AF +LTE
Sbjct: 140 AEKNGLSFIETSALD-STNVEAAFQTILTE 168
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++F++ + L++ ++H + +N+ +ML+ NK DLE R+V + G +
Sbjct: 83 AAGALLVYDITRRDTFNHLTTWLEDARQH-SNSNMVIMLIGNKSDLESRREVKKEEGEAF 141
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A ++ F E S A + + +AF
Sbjct: 142 AREHGLIFMETS-AKTASNVEEAF 164
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IV+S+ D+ SF TL L+ R +++PV+L+ NK DL R+V GR
Sbjct: 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 156
Query: 77 AVKYNCTFHEVSVA 90
A +C E S A
Sbjct: 157 AGTLSCKHIETSAA 170
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G ++V+S+ D+ SF+ + + R + + P++L+ NK DL+H RQV + G+ A
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA 137
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLL 104
+ T+ E S A + QAF L+
Sbjct: 138 RQLKVTYMEAS-AKIRMNVDQAFHELV 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G ++++ L +++SF + + LQ H N ++L NK DLE R V E
Sbjct: 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE 147
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
R A KY + E S A N I A + LL
Sbjct: 148 EEARELAEKYGIPYFETSAA-NGTNISHAIEMLL 180
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G I+VYSL++++SF + R + VPV+L+ NK+DLE R+V S GR+ A
Sbjct: 77 GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE 136
Query: 79 KYNCTFHEVS 88
++ C F E S
Sbjct: 137 EWGCPFMETS 146
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IV+S+ D+ SF TL L+ R +++PV+L+ NK DL R+V GR
Sbjct: 86 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 145
Query: 77 AVKYNCTFHEVSVA 90
A +C E S A
Sbjct: 146 AGTLSCKHIETSAA 159
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%)
Query: 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71
+ I G ++VYS+ SF S Q L VPV+L+ NK DL R+V
Sbjct: 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV 150
Query: 72 LGRSTAVKYNCTFHEVSVADN 92
G+ A + TF E S +N
Sbjct: 151 EGKKLAESWGATFMESSAREN 171
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IV+S+ D+ SF TL L+ R +++PV+L+ NK DL R+V GR
Sbjct: 76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 135
Query: 77 AVKYNCTFHEVSVA 90
A +C E S A
Sbjct: 136 AGTLSCKHIETSAA 149
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 98 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 156
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S A N+ + Q+F + E
Sbjct: 157 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 185
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 72 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 130
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A F E S A N+ + Q+F
Sbjct: 131 ADSLGIPFLETS-AKNATNVEQSF 153
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S A N+ + Q+F + E
Sbjct: 148 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 176
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++ A
Sbjct: 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 146
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
++N + E S A + + F L+ E R
Sbjct: 147 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 164
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A F E S A N+ + Q+F
Sbjct: 165 ADSLGIPFLETS-AKNATNVEQSF 187
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 79 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 137
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A F E S A N+ + Q+F
Sbjct: 138 ADSLGIPFLETS-AKNATNVEQSF 160
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 79 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 137
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A F E S A N+ + Q+F
Sbjct: 138 ADSLGIPFLETS-AKNATNVEQSF 160
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G ++VY + K SF+ L+ L R A +N+ ++L+ NK DL+HLR ++++ A
Sbjct: 83 GALLVYDITKKNSFENIEKWLKEL-RDNADSNIVILLVGNKSDLKHLRVINDNDATQYAK 141
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
K F E S + + + AF LL E
Sbjct: 142 KEKLAFIETSALE-ATNVELAFHQLLNE 168
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++ A
Sbjct: 79 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
++N + E S A + + F L+ E R
Sbjct: 139 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 169
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++ A
Sbjct: 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 150
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
++N + E S A + + F L+ E R
Sbjct: 151 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 181
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++ A
Sbjct: 79 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
++N + E S A + + F L+ E R
Sbjct: 139 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 169
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++ A
Sbjct: 77 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 136
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
++N + E S A + + F L+ E R
Sbjct: 137 DQWNVNYVETS-AKTRANVDKVFFDLMREIRA 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G ++VY + +++ L+ L+ H A +N+ + L+ NK DL HLR V R+ A
Sbjct: 86 GALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIXLVGNKSDLRHLRAVPTDEARAFAE 144
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
K +F E S D S + AF +LTE
Sbjct: 145 KNGLSFIETSALD-STNVEAAFQTILTE 171
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ES+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 82 AHGIIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTTKKVVDNTTAKEF 140
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A F E S A N+ + QAF
Sbjct: 141 ADSLGIPFLETS-AKNATNVEQAF 163
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++ L+ L+ H A +N+ + L+ NK DL HLR V R+
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIXLVGNKSDLRHLRAVPTDEARAF 136
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K +F E S D S + AF +LTE
Sbjct: 137 AEKNGLSFIETSALD-STNVEAAFQTILTE 165
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ES+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 82 AHGIIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTTKKVVDNTTAKEF 140
Query: 77 AVKYNCTFHEVSVADNSPAIYQAF 100
A F E S A N+ + QAF
Sbjct: 141 ADSLGIPFLETS-AKNATNVEQAF 163
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G ++++ L ++SF + + LQ + N ++L+ NK DL R+V+E
Sbjct: 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 161
Query: 71 SLGRSTAVKYNCTFHEVSVA 90
R A KY + E S A
Sbjct: 162 RQARELADKYGIPYFETSAA 181
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ K DL + VD + +
Sbjct: 81 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGIKCDLTTKKVVDYTTAKEF 139
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE--SRGGP 111
A F E S A N+ + Q+F + E R GP
Sbjct: 140 ADSLGIPFLETS-AKNATNVEQSFMTMAAEIKKRMGP 175
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G ++++ L ++SF + + LQ + N ++L+ NK DL R+V+E
Sbjct: 88 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71 SLGRSTAVKYNCTFHEVSVA 90
R A KY + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G +IVY + S++ L L R A +NV V L+ NK DL HLR V ++ A
Sbjct: 88 GALIVYDISKSSSYENCNHWLSEL-RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ 146
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLL 104
+ F E S A NS + +AF+ L+
Sbjct: 147 ENQLLFTETS-ALNSENVDKAFEELI 171
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G I++Y + ++ESF+ AV + + +N V+L+ NK D+E R V
Sbjct: 72 TAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS 130
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
GR A F E S DN + Q F+ L+
Sbjct: 131 ERGRQLADHLGFEFFEASAKDN-INVKQTFERLV 163
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G ++++ L ++SF + + LQ + N ++L+ NK DL R+V+E
Sbjct: 88 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71 SLGRSTAVKYNCTFHEVSVA 90
R A KY + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G I+ Y + ++ESF+ AV + + +N V+L+ NK D E R V
Sbjct: 75 TAYYRGAXGFILXYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSS 133
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
GR A F E S DN + Q F+ L+
Sbjct: 134 ERGRQLADHLGFEFFEASAKDN-INVKQTFERLV 166
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G ++ + L ++SF + LQ + N ++L+ NK DL R+V+E
Sbjct: 88 TAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71 SLGRSTAVKYNCTFHEVSVA 90
R A KY + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNN-VPVMLLANKLDLEHLRQVDESLGRS 75
+G ++V+S+ + ESF + + R +A + +P++++ NK DLE RQV RS
Sbjct: 79 GEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARS 138
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A ++ + E S A + + F L+ E R
Sbjct: 139 KAEEWGVQYVETS-AKTRANVDKVFFDLMREIR 170
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G ++ + L ++SF + LQ + N ++L+ NK DL R+V+E
Sbjct: 88 TAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71 SLGRSTAVKYNCTFHEVSVA 90
R A KY + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNN-VPVMLLANKLDLEHLRQVDESLGRST 76
+G ++V+S+ + ESF + + R +A + +P++++ NK DLE RQV RS
Sbjct: 76 EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSK 135
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A ++ + E S A + + F L+ E R
Sbjct: 136 AEEWGVQYVETS-AKTRANVDKVFFDLMREIR 166
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G I++Y + ++ESF+ AV + + +N V+L+ NK D+E R V
Sbjct: 90 TAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT 148
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
G+ A + F E S +N ++ QAF+ L+
Sbjct: 149 EKGQLLAEQLGFDFFEASAKEN-ISVRQAFERLV 181
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G +IVY + S++ L L R A +NV V L+ NK DL HLR V ++ A+
Sbjct: 85 GALIVYDISKSSSYENCNHWLTEL-RENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAM 143
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLL 104
+ F E S A NS + +AF L+
Sbjct: 144 ENQMLFTETS-ALNSDNVDKAFRELI 168
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G IIVY + D+ESF+ LQ + R+ A + V +L+ NK DL+ R V+ + + A
Sbjct: 83 GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 79 KYNCTFHEVSVADNSPAIYQAF 100
F E S D S + AF
Sbjct: 142 ANKMPFLETSALD-STNVEDAF 162
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 IIVYSLIDKESFDYAVSTLQNL--QRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
I+V+S+ K+S + + + L Q +V ++PVML+ NK D E R+VD ++ A
Sbjct: 84 ILVFSVTSKQSLE-ELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQ 141
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLT 105
++ C F E S N + + F LLT
Sbjct: 142 EWKCAFMETSAKMNY-NVKELFQELLT 167
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G ++V+++ D++SF+ + R + ++ PV+L+ NK DLE RQV S +
Sbjct: 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA 142
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
++ + E S A + +AF+ L+ R
Sbjct: 143 SHHVAYFEAS-AKLRLNVDEAFEQLVRAVR 171
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G IIVY + D+ESF+ LQ + R+ A + V +L+ NK DL+ R V+ + + A
Sbjct: 96 GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 154
Query: 79 KYNCTFHEVSVADNSPAIYQAF 100
F E S D S + AF
Sbjct: 155 ANKMPFLETSALD-STNVEDAF 175
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A+G I+ Y + + SF +++++++ A +N+ +L+ NK DL LR+V + +S
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSL 160
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE---SRGGP 111
A Y+ + A +S + +AF + TE GGP
Sbjct: 161 AEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G IIVY + D+ESF+ LQ + R+ A + V +L+ NK DL+ R V+ + + A
Sbjct: 83 GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 79 KYNCTFHEVSVADNSPAIYQAF 100
F E S D S + AF
Sbjct: 142 ANKMPFLETSALD-STNVEDAF 162
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G I+VYS+ +SF+ L +P+ML+ NK DL R + G++ A
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+N F E S +N A+ F ++ E+
Sbjct: 139 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 168
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 138
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 139 ADDNSLLFXETS 150
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 138 ADDNSLLFMETS 149
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G I+VYS+ +SF+ L +P+ML+ NK DL R + G++ A
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+N F E S +N A+ F ++ E+
Sbjct: 139 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 168
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G I+VYS+ +SF+ L +P+ML+ NK DL R + G++ A
Sbjct: 74 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 133
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+N F E S +N A+ F ++ E+
Sbjct: 134 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 163
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 138 ADDNSLLFMETS 149
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 138 ADDNSLLFMETS 149
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G I+VYS+ +SF+ L +P+ML+ NK DL R + G++ A
Sbjct: 77 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 136
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+N F E S +N A+ F ++ E+
Sbjct: 137 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 166
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 138 ADDNSLLFMETS 149
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 138
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 139 ADDNSLLFMETS 150
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 138 ADDNSLLFMETS 149
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G +VYS+ + +F+ + + R + ++VP++L+ NK DLE R V + G++ A
Sbjct: 77 GFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLAR 136
Query: 79 KY-NCTFHEVS 88
++ NC F E S
Sbjct: 137 QWNNCAFLESS 147
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 138 ADDNSLLFMETS 149
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G +VYS+ + +F+ + + R + ++VP++L+ NK DLE R V + G++ A
Sbjct: 79 GFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLAR 138
Query: 79 KY-NCTFHEVS 88
++ NC F E S
Sbjct: 139 QWNNCAFLESS 149
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR +A N+ + L NK DL + R VD +S
Sbjct: 78 AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 136
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 137 ADDNSLLFMETS 148
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A +++Y + +K SFD + L + + A ++V +MLL NK+D H R V G
Sbjct: 84 AHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKL 142
Query: 77 AVKYNCTFHEVS 88
A +Y F E S
Sbjct: 143 AKEYGLPFMETS 154
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G +VYS+ + +F+ + + R + +VP++L+ NK DLE R V + G++ A
Sbjct: 77 GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 136
Query: 79 KY-NCTFHEVS 88
++ NC F E S
Sbjct: 137 QWCNCAFLESS 147
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
G +VYS+ + +F+ + + R + +VP++L+ NK DLE R V + G++ A
Sbjct: 77 GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 136
Query: 79 KY-NCTFHEVS 88
++ NC F E S
Sbjct: 137 QWCNCAFLESS 147
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + KE+FD ++ + ++ A + ++L+ NKLD E R++ G
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKF 157
Query: 77 AVKY-NCTFHEVSVADN 92
A + F E S DN
Sbjct: 158 AQQITGMRFCEASAKDN 174
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + +++F + L L+ + N++ L+ NK+D E+ R+VD + G
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN-REVDRNEGLKF 146
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHL---------LTESRG---GPPSG 114
A K++ F E S A + AF+ L L ES GP SG
Sbjct: 147 ARKHSXLFIEAS-AKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSSG 195
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 21 IIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79
I+VYS+ ++S + + + + V ++P+ML+ NK D R+V S + A
Sbjct: 79 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART 138
Query: 80 YNCTFHEVSVADNSPAIYQAFDHLL 104
+ C F E S N + + F LL
Sbjct: 139 WKCAFMETSAKLNH-NVKELFQELL 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
TA A G +++Y + ++ESF AV + + +N V+L+ NK DLE R V
Sbjct: 89 TAYYRGAMGFLLMYDIANQESFA-AVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPA 147
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
GR A F E S +N + Q F+ L+
Sbjct: 148 EDGRRLADDLGFEFFEASAKENIN-VKQVFERLV 180
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 20 CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79
++VY + + SF + +++ R ++V +ML+ NK DL RQV G A +
Sbjct: 92 AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKE 150
Query: 80 YNCTFHEVS 88
N F E S
Sbjct: 151 LNVMFIETS 159
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 20 CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79
++VY + + SF + +++ R ++V +ML+ NK DL RQV G A +
Sbjct: 90 AVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE 148
Query: 80 YNCTFHEVS 88
N F E S
Sbjct: 149 LNVMFIETS 157
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL
Sbjct: 71 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDL 115
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
++VY + + SF + +++ R ++V +ML+ NK DL RQV G A
Sbjct: 88 AAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK 146
Query: 79 KYNCTFHEVS 88
+ N F E S
Sbjct: 147 ELNVMFIETS 156
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
++VY + + SF + +++ R ++V +ML+ NK DL RQV G A
Sbjct: 81 AAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK 139
Query: 79 KYNCTFHEVS 88
+ N F E S
Sbjct: 140 ELNVMFIETS 149
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL------EHLRQVDE 70
ADG +++Y + ++SF + ++ A VP+ML+ NK D+ E + V
Sbjct: 101 ADGVLLLYDVTCEKSF-LNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPG 159
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
G A+ Y F E S D S I +A HL E +
Sbjct: 160 HFGEKLAMTYGALFCETSAKDGSN-IVEAVLHLAREVK 196
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 20 CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79
++VY + + SF + +++ R ++V +ML+ NK DL RQV G A +
Sbjct: 82 AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKE 140
Query: 80 YNCTFHEVS 88
N F E S
Sbjct: 141 LNVMFIETS 149
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++E+F A + ++ LQR +A ++ + L NK DL + R V+ ++
Sbjct: 81 AQAAIVVYDITNQETFARAKTWVKELQR-QASPSIVIALAGNKADLANKRMVEYEEAQAY 139
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 140 ADDNSLLFMETS 151
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 20 CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79
++VY + + SF + +++ R ++V +ML+ NK DL RQV G A +
Sbjct: 77 AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKE 135
Query: 80 YNCTFHEVS 88
N F E S
Sbjct: 136 LNVMFIETS 144
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 21 IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
+ VY + + SF + ++ ++H N++P +L+ NK DL QV L + A +
Sbjct: 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH 157
Query: 81 NCTFHEVSVA-----DNSPAIYQAFDHLL 104
+ E S D+ AI+ H L
Sbjct: 158 SMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++V+ L +++ L+ L H A + VML+ NK DL R+V R
Sbjct: 98 AVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMF 156
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S D S + AF+ +L E
Sbjct: 157 AENNGLLFLETSALD-STNVELAFETVLKE 185
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK--LDLEHLRQVDESL 72
W D + V+SL D+ SF + L R + VP++L+ + + + R +D+S
Sbjct: 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSR 143
Query: 73 GR--STAVKYNCTFHE 86
R ST +K CT++E
Sbjct: 144 ARKLSTDLK-RCTYYE 158
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFS 122
A Y + E S A + AF L+ E R HK+RK +
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIRQ------HKLRKLN 172
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 21 IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
+ VY + SF + ++ ++H N++P +L+ NK DL QV L + A +
Sbjct: 107 VFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH 166
Query: 81 NCTFHEVSVA-----DNSPAIYQAFDHLL 104
+ E S D+ AI+ H L
Sbjct: 167 SXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++V+ L +++ L+ L H A + VML+ NK DL R+V R
Sbjct: 83 AVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMF 141
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S D S + AF+ +L E
Sbjct: 142 AENNGLLFLETSALD-STNVELAFETVLKE 170
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD----ESL 72
++G I+VY + D++SF + ++ L++ N + + ++ NK+DLE R V ES
Sbjct: 93 SNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAESY 151
Query: 73 GRSTAVKY 80
S K+
Sbjct: 152 AESVGAKH 159
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD----ESL 72
++G I+VY + D++SF + ++ L++ N + + ++ NK+DLE R V ES
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAESY 137
Query: 73 GRSTAVKY 80
S K+
Sbjct: 138 AESVGAKH 145
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD----ESL 72
++G I+VY + D++SF + ++ L++ N + + ++ NK+DLE R V ES
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAESY 137
Query: 73 GRSTAVKY 80
S K+
Sbjct: 138 AESVGAKH 145
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR---QVDESLGR 74
DG I V D+E D A L + + + +++ ANK DL + +V E L
Sbjct: 86 DGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHL 145
Query: 75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLT 105
+T + N F + + A +Y+ FD L T
Sbjct: 146 NTIRERNW-FIQSTCATRGDGLYEGFDWLTT 175
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + + ++F A + ++ LQR +A N+ + L NK DL R V+ ++
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKADLASKRAVEFQEAQAY 136
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 137 ADDNSLLFMETS 148
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A C++V+S D+ESF+ A+S+ + + V ++P L+ NK+DL +
Sbjct: 78 AQACVLVFSTTDRESFE-AISSWRE-KVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGL 135
Query: 77 AVKYNCTFHEVSVADN 92
A + F+ SV ++
Sbjct: 136 AKRLKLRFYRTSVKED 151
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + + ++F A + ++ LQR +A N+ + L NK DL R V+ ++
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKADLASKRAVEFQEAQAY 136
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 137 ADDNSLLFMETS 148
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKF 121
Y + E S A + AF L+ E R HK+RK
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIRQ------HKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKF 121
Y + E S A + AF L+ E R HK+RK
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIRQ------HKLRKL 171
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + + ++F A + ++ LQR +A N+ + L NK DL R V+ ++
Sbjct: 76 AQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKADLASKRAVEFQEAQAY 134
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 135 ADDNSLLFMETS 146
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + +VP++L+ NK DL R VD +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 134
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y F E S A + AF L+ E R
Sbjct: 135 ARSYGIPFIETS-AKTRQGVDDAFYTLVREIR 165
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLA---NKLDLEHLRQVDESLGRS 75
IIVY + +E+F STL+N R + P +++A NK DL +R+V E +
Sbjct: 81 AAIIVYDITKEETF----STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKD 136
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAF 100
A + F E S A N+ I + F
Sbjct: 137 YADSIHAIFVETS-AKNAININELF 160
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLA---NKLDLEHLRQVDESLGRS 75
IIVY + +E+F STL+N R + P +++A NK DL +R+V E +
Sbjct: 80 AAIIVYDITKEETF----STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKD 135
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAF 100
A + F E S A N+ I + F
Sbjct: 136 YADSIHAIFVETS-AKNAININELF 159
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + +VP++L+ NK DL R VD +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y F E S A + AF L+ E R
Sbjct: 135 ARSYGIPFIETS-AKTRQGVDDAFYTLVREIR 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNN---VPVMLLANKLDLEHLRQV 68
AD C++VY + + SF+ S H VN+ P ++L NK+D E +++
Sbjct: 82 ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI 136
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + +VP++L+ NK DL R VD +
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y F E S A + AF L+ E R
Sbjct: 152 ARSYGIPFIETS-AKTRQGVDDAFYTLVREIR 182
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 20 CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79
++VY + + SF + +++ R ++V +ML+ NK DL RQ+ G A +
Sbjct: 78 AVVVYDITNLNSFQQTSKWIDDVRTERG-SDVIIMLVGNKTDLADKRQITIEEGEQRAKE 136
Query: 80 YNCTFHEVS 88
+ F E S
Sbjct: 137 LSVMFIETS 145
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + +VP++L+ NK DL R VD +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y F E S A + AF L+ E R
Sbjct: 135 ARSYGIPFIETS-AKTRQGVDDAFYTLVREIR 165
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + +VP++L+ NK DL R VD +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y F E S A + AF L+ E R
Sbjct: 135 ARSYGIPFIETS-AKTRQGVDDAFYTLVREIR 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 141 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 171
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A+ I+ Y + +ESF L+ ++++ A N V +L+ NK+DL R+V +
Sbjct: 99 ANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEF 157
Query: 77 AVKYNCTFHEVSV--ADNSPAIYQAFD-HLLTESR 108
+ + + E S +DN ++ L++E+R
Sbjct: 158 SEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG-RTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 139 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 169
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 139 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 169
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 139 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 169
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ 67
AD I+ +SLI K S++ RH A VP++L+ KLDL +Q
Sbjct: 78 ADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQ 127
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF + ++R + ++VP++L+ NK DL R VD
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y F E S A + AF L+ E R
Sbjct: 152 AKSYGIPFIETS-AKTRQGVEDAFYTLVREIR 182
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 140 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 170
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREFR 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S A + AF L+ E R
Sbjct: 134 ARSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A IIV+ + ++ SF+ A +Q LQ N V + L NK DL R+V ++
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVTAEDAQTY 143
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 144 AQENGLFFMETS 155
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + + ++++ S L + R+ N ++L+ NK DLE R V +
Sbjct: 103 AAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF 161
Query: 77 AVKYNCTFHEVS 88
A + F E S
Sbjct: 162 AEENGLLFLEAS 173
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
+IVY + ++SF ++ L+ H N+ + + NK DL +R+V + A
Sbjct: 98 AAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAE 156
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHK 117
E S A N+ I + F + SR PP H+
Sbjct: 157 SIGAIVVETS-AKNAINIEELFQGI---SRQIPPLDPHE 191
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + + ++++ S L + R+ N ++L+ NK DLE R V +
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF 146
Query: 77 AVKYNCTFHEVSV 89
A + F E S
Sbjct: 147 AEENGLLFLEASA 159
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68
A G ++VY + +E+++ + L + R A N+ V+L NK DL+ R+V
Sbjct: 98 AAGALLVYDITSRETYNSLAAWLTD-ARTLASPNIVVILCGNKKDLDPEREV 148
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68
A G ++VY + +E+++ + L + R A N+ ++L NK DL+ R+V
Sbjct: 84 AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREV 134
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
+G + V+++ + +SF+ + ++R + ++VP++L+ N+ DL R V+ + A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDLA 134
Query: 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
Y + E S A + AF L+ E R
Sbjct: 135 RSYGIPYIETS-AKTRQGVEDAFYTLVREIR 164
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQR--HRAVNNVPVMLLANKLDLEHLRQ 67
L I A G ++VY + + +SF+ +++ + V L+ NK+DLEH+R
Sbjct: 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT 132
Query: 68 V 68
+
Sbjct: 133 I 133
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68
A G ++VY + +E+++ + L + R A N+ ++L NK DL+ R+V
Sbjct: 83 AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREV 133
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63
AD ++ +SLI K S++ + R R NVP++L+ KLDL
Sbjct: 81 ADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLR 126
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68
A G ++VY + +E+++ + L + R A N+ ++L NK DL+ R+V
Sbjct: 81 AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREV 131
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ 67
AD I+ +SLI K S++ +H A VP++L+ KLDL +Q
Sbjct: 80 ADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQ 129
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL------EHLRQVDES 71
+G + + D + L L ++NVP+++L NK+D E LR++
Sbjct: 104 NGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 163
Query: 72 LGRSTAVKYNCTFHEVS 88
G++T K N T E++
Sbjct: 164 YGQTTG-KGNVTLKELN 179
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
AD +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 96 ADVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 150
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 8 GTLTAMICWAD------GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61
G + A W D G + + D E FD A L L + +VP ++L NK+D
Sbjct: 54 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRH-------RAVNNVPVMLLANKLDLEHLRQV 68
AD C++ +S+ D++SF+ L N Q+ + + P ++L NK+D E RQV
Sbjct: 80 ADCCLLTFSVDDRQSFE----NLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKED-RQV 133
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRH-------RAVNNVPVMLLANKLDLEHLRQVD 69
AD C++V+ + +F TL + + R N P ++L NK+DLE+ RQV
Sbjct: 81 ADCCVLVFDVTAPNTF----KTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV- 134
Query: 70 ESLGRSTAVKY---NCTFHEVSVADNSPAIYQAFDHL 103
+ R+ A Y N + E S A + + QAF +
Sbjct: 135 -ATKRAQAWCYSKNNIPYFETS-AKEAINVEQAFQTI 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRH-------RAVNNVPVMLLANKLDLEHLRQVD 69
AD C++V+ + +F TL + + R N P ++L NK+DLE+ RQV
Sbjct: 81 ADCCVLVFDVTAPNTF----KTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV- 134
Query: 70 ESLGRSTAVKY---NCTFHEVSVADNSPAIYQAF 100
+ R+ A Y N + E S A + + QAF
Sbjct: 135 -ATKRAQAWCYSKNNIPYFETS-AKEAINVEQAF 166
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL------EHLRQVDES 71
+G + + D E + L +L + NVP+++L NK+D E LR++
Sbjct: 85 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 144
Query: 72 LGRSTA 77
G++T
Sbjct: 145 YGQTTG 150
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL------EHLRQVDES 71
+G + + D E + L +L + NVP+++L NK+D E LR++
Sbjct: 91 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 150
Query: 72 LGRSTA 77
G++T
Sbjct: 151 YGQTTG 156
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL------EHLRQVDES 71
+G + + D E + L +L + NVP+++L NK+D E LR++
Sbjct: 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153
Query: 72 LGRSTA 77
G++T
Sbjct: 154 YGQTTG 159
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRH-------RAVNNVPVMLLANKLDLEHLRQVD 69
AD C++V+ + +F TL + + R N P ++L NK+DLE+ RQV
Sbjct: 81 ADCCVLVFDVTAPNTF----KTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV- 134
Query: 70 ESLGRSTAVKY---NCTFHEVSVADNSPAIYQAF 100
+ R+ A Y N + E S A + + QAF
Sbjct: 135 -ATKRAQAWCYSKNNIPYFETS-AKEAINVEQAF 166
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 8 GTLTAMICWAD------GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61
G + A W D G + + D E FD A L L + +VP ++L NK+D
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 78 DVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 131
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTL 39
WAD I V+SL D+ SF AVS L
Sbjct: 72 WADAVIFVFSLEDENSFQ-AVSRL 94
>pdb|3KYH|A Chain A, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|B Chain B, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 310
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
E+ +++ + + T HEV + N+PA+ AFD++ +S+
Sbjct: 237 ENHNQNSKSRQSETTHEVELEINTPALLNAFDNITNDSK 275
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 80 DVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 133
>pdb|1D8H|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8I|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion
Length = 311
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
E+ +++ + + T HEV + N+PA+ AFD++ +S+
Sbjct: 238 ENHNQNSKSRQSETTHEVELEINTPALLNAFDNITNDSK 276
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTL 39
WAD I V+SL D+ SF AVS L
Sbjct: 72 WADAVIFVFSLEDENSFQ-AVSRL 94
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 22 IVYSL--IDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
IVY + D+E + + + L NL + +PV++L NK DL
Sbjct: 94 IVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 79 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 132
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 83 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 136
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 156
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 156
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 129
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 95 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 148
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 22 IVYSL--IDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
IVY + D+E + + + L NL + +PV++L NK DL
Sbjct: 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 156
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 86 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 139
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 22 IVYSL--IDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
IVY + D+E + + + L NL + +PV++L NK DL
Sbjct: 103 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF + + RH N P++L+ KLDL + E L
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 281
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 38 TLQNLQR----HRAV--NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88
T QNL R +AV N P+++ ANK+D+++ +++ + L N + E+S
Sbjct: 99 TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEIS 155
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF + + RH N P++L+ KLDL + E L
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 281
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D +I +SL+ SF + + RH N P++L+ KLDL + E L
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKL 281
>pdb|2HSN|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
Length = 160
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 8 GTLTAMICWADGCIIVYSLIDKE-----SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
T + + I+ Y + D E + +A+++LQNL H+ + V +L NK
Sbjct: 51 NTKEPFLLFDANAILRYVMDDFEGQTSDKYQFALASLQNLLYHKELPQQHVEVLTNKAIE 110
Query: 63 EHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH 116
+L ++ E L + + + + A NS ++ F L PS +H
Sbjct: 111 NYLVELKEPLTTTDLILFANVY-----ALNSSLVHSKFPEL--------PSKVH 151
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH---LRQVDESLGRS 75
G I V D+E LQ + + + ++L ANK DL + + ++ + LG
Sbjct: 87 GLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQ 146
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+++ + + + A +Y+ D L E
Sbjct: 147 -SLRNRTWYVQATCATQGTGLYEGLDWLSNE 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,922,239
Number of Sequences: 62578
Number of extensions: 180795
Number of successful extensions: 625
Number of sequences better than 100.0: 225
Number of HSP's better than 100.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 231
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)