Query psy2792
Match_columns 173
No_of_seqs 297 out of 1385
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 17:03:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0092|consensus 100.0 2.1E-29 4.5E-34 181.0 12.5 111 2-114 61-173 (200)
2 KOG0084|consensus 100.0 2.2E-29 4.7E-34 181.6 12.3 110 2-113 65-177 (205)
3 KOG0078|consensus 100.0 4.3E-29 9.3E-34 182.2 11.2 106 2-109 68-175 (207)
4 KOG0094|consensus 100.0 4.2E-28 9.2E-33 174.6 11.2 110 2-112 78-189 (221)
5 KOG0080|consensus 100.0 6.8E-28 1.5E-32 168.7 10.2 114 2-116 67-182 (209)
6 KOG0093|consensus 99.9 1.1E-27 2.3E-32 165.4 8.0 107 2-110 77-185 (193)
7 KOG0098|consensus 99.9 2.4E-27 5.1E-32 169.6 9.1 109 2-112 62-172 (216)
8 KOG0088|consensus 99.9 3.2E-27 7E-32 165.0 9.3 110 2-113 69-180 (218)
9 cd04120 Rab12 Rab12 subfamily. 99.9 1.1E-25 2.4E-30 167.9 15.4 107 2-110 56-165 (202)
10 KOG0087|consensus 99.9 1E-26 2.2E-31 169.4 9.4 107 2-110 70-178 (222)
11 KOG0091|consensus 99.9 4.6E-26 9.9E-31 159.9 11.3 109 2-111 65-176 (213)
12 cd04121 Rab40 Rab40 subfamily. 99.9 8.9E-26 1.9E-30 166.8 13.5 105 2-109 62-168 (189)
13 KOG0079|consensus 99.9 1.8E-26 3.8E-31 159.6 7.8 107 2-111 64-172 (198)
14 KOG0394|consensus 99.9 1.1E-25 2.4E-30 160.7 9.9 111 2-113 65-183 (210)
15 KOG0083|consensus 99.9 5E-26 1.1E-30 155.0 6.2 108 2-111 54-163 (192)
16 cd04133 Rop_like Rop subfamily 99.9 1E-24 2.2E-29 159.4 12.7 105 2-109 56-174 (176)
17 cd01873 RhoBTB RhoBTB subfamil 99.9 8.8E-25 1.9E-29 162.2 11.9 102 2-106 73-194 (195)
18 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 2.1E-24 4.5E-29 158.6 12.4 104 2-108 60-180 (182)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 7.7E-24 1.7E-28 160.8 15.0 106 2-109 68-189 (232)
20 cd01875 RhoG RhoG subfamily. 99.9 6.9E-24 1.5E-28 156.9 13.4 105 2-109 58-178 (191)
21 PTZ00099 rab6; Provisional 99.9 7.1E-24 1.5E-28 155.0 13.3 108 2-111 36-145 (176)
22 KOG0086|consensus 99.9 2.1E-24 4.6E-29 150.1 8.9 108 2-111 65-174 (214)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 9.2E-24 2E-28 153.7 12.5 107 2-109 57-165 (172)
24 cd04131 Rnd Rnd subfamily. Th 99.9 7.9E-24 1.7E-28 155.0 12.0 104 2-108 56-176 (178)
25 KOG0081|consensus 99.9 5.4E-24 1.2E-28 149.0 8.6 109 2-111 74-184 (219)
26 cd04122 Rab14 Rab14 subfamily. 99.9 8.6E-23 1.9E-27 147.3 12.8 106 2-109 58-165 (166)
27 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-22 2.3E-27 153.6 13.1 108 2-111 51-193 (220)
28 KOG0395|consensus 99.9 1.1E-22 2.5E-27 150.7 13.0 107 2-109 58-166 (196)
29 smart00176 RAN Ran (Ras-relate 99.9 1.1E-22 2.4E-27 151.5 12.9 104 2-110 51-156 (200)
30 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.1E-22 4.6E-27 149.9 14.5 109 2-111 57-171 (201)
31 cd04127 Rab27A Rab27a subfamil 99.9 8.8E-23 1.9E-27 148.9 12.1 107 2-109 70-178 (180)
32 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.6E-22 3.5E-27 147.6 12.1 103 2-107 56-174 (175)
33 cd04117 Rab15 Rab15 subfamily. 99.9 2.3E-22 5E-27 144.7 12.3 103 2-106 56-160 (161)
34 cd04103 Centaurin_gamma Centau 99.9 2.1E-22 4.5E-27 144.8 11.6 101 2-106 54-157 (158)
35 KOG0095|consensus 99.9 3.9E-23 8.6E-28 143.3 7.1 106 2-109 63-170 (213)
36 cd04134 Rho3 Rho3 subfamily. 99.9 4E-22 8.7E-27 147.1 13.0 105 2-109 55-175 (189)
37 cd04111 Rab39 Rab39 subfamily. 99.9 7.8E-22 1.7E-26 148.1 14.7 108 2-110 59-168 (211)
38 cd04136 Rap_like Rap-like subf 99.9 4E-22 8.7E-27 142.8 12.6 105 2-107 56-162 (163)
39 KOG0097|consensus 99.9 2.1E-22 4.5E-27 138.7 10.3 109 2-112 67-177 (215)
40 cd04144 Ras2 Ras2 subfamily. 99.9 4.1E-22 8.9E-27 147.1 12.7 107 2-109 54-164 (190)
41 cd04175 Rap1 Rap1 subgroup. T 99.9 5.5E-22 1.2E-26 142.7 13.0 105 2-107 56-162 (164)
42 PTZ00369 Ras-like protein; Pro 99.9 5.3E-22 1.2E-26 146.4 13.1 108 2-110 60-169 (189)
43 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1E-21 2.2E-26 148.3 14.7 106 2-110 56-178 (222)
44 cd01871 Rac1_like Rac1-like su 99.9 4.9E-22 1.1E-26 144.9 11.8 102 2-106 56-173 (174)
45 cd04109 Rab28 Rab28 subfamily. 99.9 7.3E-22 1.6E-26 148.6 13.0 108 2-110 57-168 (215)
46 cd04176 Rap2 Rap2 subgroup. T 99.9 1.2E-21 2.5E-26 140.7 12.7 105 2-107 56-162 (163)
47 cd04110 Rab35 Rab35 subfamily. 99.9 2.1E-21 4.6E-26 144.4 14.0 110 2-114 62-173 (199)
48 cd01865 Rab3 Rab3 subfamily. 99.9 1.6E-21 3.4E-26 140.6 12.8 106 2-109 57-164 (165)
49 PLN03108 Rab family protein; P 99.9 3.9E-21 8.5E-26 144.2 15.1 107 2-110 62-170 (210)
50 cd01867 Rab8_Rab10_Rab13_like 99.9 1.9E-21 4.1E-26 140.5 12.9 106 2-109 59-166 (167)
51 PF00071 Ras: Ras family; Int 99.9 1.5E-21 3.2E-26 139.9 12.2 105 2-108 55-161 (162)
52 PLN03071 GTP-binding nuclear p 99.9 1.2E-21 2.7E-26 147.8 12.3 104 2-110 69-174 (219)
53 smart00174 RHO Rho (Ras homolo 99.9 2E-21 4.3E-26 140.9 12.4 105 2-109 53-173 (174)
54 cd04112 Rab26 Rab26 subfamily. 99.9 2.8E-21 6.1E-26 142.7 13.1 111 2-114 57-169 (191)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.1E-21 4.6E-26 142.6 12.1 109 2-113 56-171 (182)
56 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.1E-21 6.6E-26 139.0 12.7 106 2-109 58-165 (166)
57 cd04119 RJL RJL (RabJ-Like) su 99.9 3.1E-21 6.7E-26 138.5 12.5 107 2-109 56-168 (168)
58 cd04140 ARHI_like ARHI subfami 99.9 3.6E-21 7.9E-26 138.7 12.7 103 2-105 56-162 (165)
59 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.7E-21 1E-25 137.4 12.9 105 2-107 57-163 (164)
60 smart00173 RAS Ras subfamily o 99.9 6.8E-21 1.5E-25 136.8 13.4 106 2-108 55-162 (164)
61 cd04106 Rab23_lke Rab23-like s 99.9 3.7E-21 8E-26 137.8 11.5 102 2-106 58-161 (162)
62 cd00877 Ran Ran (Ras-related n 99.9 5.8E-21 1.2E-25 138.1 12.6 106 1-111 55-162 (166)
63 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 6.2E-21 1.4E-25 138.5 12.3 107 2-109 56-166 (170)
64 cd04125 RabA_like RabA-like su 99.9 1.3E-20 2.8E-25 138.7 14.1 106 2-109 56-163 (188)
65 KOG4252|consensus 99.9 2.2E-21 4.8E-26 138.4 9.0 108 2-112 76-185 (246)
66 PLN03110 Rab GTPase; Provision 99.9 7.2E-21 1.6E-25 143.3 12.3 106 2-109 68-175 (216)
67 cd01868 Rab11_like Rab11-like. 99.9 1E-20 2.2E-25 136.1 12.2 104 2-107 59-164 (165)
68 cd04132 Rho4_like Rho4-like su 99.9 9.4E-21 2E-25 139.1 12.2 107 2-111 56-170 (187)
69 cd01866 Rab2 Rab2 subfamily. 99.9 1.4E-20 3.1E-25 136.1 12.9 106 2-109 60-167 (168)
70 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.7E-20 3.6E-25 133.9 12.9 104 2-107 56-161 (162)
71 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1E-20 2.2E-25 137.1 11.9 105 2-107 58-168 (170)
72 cd04146 RERG_RasL11_like RERG/ 99.9 1.7E-20 3.7E-25 135.0 13.0 106 2-108 54-164 (165)
73 cd04148 RGK RGK subfamily. Th 99.9 1.3E-20 2.7E-25 142.5 12.8 107 2-109 57-164 (221)
74 cd04143 Rhes_like Rhes_like su 99.8 3.9E-20 8.4E-25 141.9 14.6 106 2-108 55-171 (247)
75 KOG0393|consensus 99.8 9.5E-21 2.1E-25 138.7 9.8 108 2-112 60-183 (198)
76 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.9E-20 6.2E-25 133.5 11.9 103 2-107 59-163 (164)
77 cd01864 Rab19 Rab19 subfamily. 99.8 2.8E-20 6.1E-25 133.9 11.7 103 2-106 59-164 (165)
78 cd04113 Rab4 Rab4 subfamily. 99.8 3.8E-20 8.2E-25 132.6 11.7 103 2-106 56-160 (161)
79 PLN03118 Rab family protein; P 99.8 1.4E-19 3E-24 135.8 15.0 110 2-112 69-181 (211)
80 cd04130 Wrch_1 Wrch-1 subfamil 99.8 4.5E-20 9.8E-25 134.1 11.6 101 2-105 55-171 (173)
81 cd04116 Rab9 Rab9 subfamily. 99.8 5.1E-20 1.1E-24 133.1 11.8 103 2-106 61-169 (170)
82 cd04177 RSR1 RSR1 subgroup. R 99.8 1.2E-19 2.5E-24 131.2 13.2 106 2-108 56-164 (168)
83 cd04124 RabL2 RabL2 subfamily. 99.8 9.6E-20 2.1E-24 130.9 12.4 102 2-109 56-159 (161)
84 cd04142 RRP22 RRP22 subfamily. 99.8 9.9E-20 2.2E-24 135.4 12.5 99 10-109 74-175 (198)
85 cd04118 Rab24 Rab24 subfamily. 99.8 1.5E-19 3.3E-24 133.4 13.2 106 2-110 57-168 (193)
86 cd04158 ARD1 ARD1 subfamily. 99.8 1.4E-19 3.1E-24 131.1 12.3 108 2-112 50-165 (169)
87 cd04129 Rho2 Rho2 subfamily. 99.8 2E-19 4.3E-24 132.4 12.8 108 2-112 56-177 (187)
88 smart00175 RAB Rab subfamily o 99.8 1.9E-19 4.2E-24 128.9 12.4 106 2-109 56-163 (164)
89 cd04135 Tc10 TC10 subfamily. 99.8 3E-19 6.6E-24 129.4 12.0 103 2-107 55-173 (174)
90 cd04149 Arf6 Arf6 subfamily. 99.8 1.8E-19 3.9E-24 130.6 10.6 101 2-105 60-167 (168)
91 cd04123 Rab21 Rab21 subfamily. 99.8 5.4E-19 1.2E-23 126.1 12.3 104 2-107 56-161 (162)
92 cd01860 Rab5_related Rab5-rela 99.8 6.5E-19 1.4E-23 126.2 12.4 104 2-107 57-162 (163)
93 smart00177 ARF ARF-like small 99.8 1.2E-19 2.5E-24 132.4 8.6 103 2-107 64-173 (175)
94 cd01861 Rab6 Rab6 subfamily. 99.8 5.5E-19 1.2E-23 126.3 12.0 103 2-106 56-160 (161)
95 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.4E-19 3.1E-24 130.6 8.7 101 2-105 51-163 (164)
96 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.1E-19 2.3E-24 130.6 7.7 101 2-105 51-158 (159)
97 cd01863 Rab18 Rab18 subfamily. 99.8 9.5E-19 2.1E-23 125.2 12.6 103 2-106 56-160 (161)
98 cd01892 Miro2 Miro2 subfamily. 99.8 4E-19 8.7E-24 128.9 10.7 104 2-109 61-167 (169)
99 PLN00223 ADP-ribosylation fact 99.8 5.9E-19 1.3E-23 129.5 11.5 105 2-109 68-179 (181)
100 cd04147 Ras_dva Ras-dva subfam 99.8 1.6E-18 3.5E-23 128.7 13.8 113 2-115 54-170 (198)
101 cd04139 RalA_RalB RalA/RalB su 99.8 1.9E-18 4.1E-23 123.6 13.2 107 2-109 55-163 (164)
102 cd01862 Rab7 Rab7 subfamily. 99.8 2.4E-18 5.3E-23 124.2 12.7 108 2-110 56-169 (172)
103 cd01870 RhoA_like RhoA-like su 99.8 2.2E-18 4.7E-23 125.0 12.1 103 2-107 56-174 (175)
104 cd04114 Rab30 Rab30 subfamily. 99.8 2.8E-18 6.1E-23 123.7 12.5 104 2-107 63-168 (169)
105 PTZ00133 ADP-ribosylation fact 99.8 5.6E-19 1.2E-23 129.7 8.4 105 2-109 68-179 (182)
106 cd04137 RheB Rheb (Ras Homolog 99.8 7.1E-18 1.5E-22 123.0 12.9 108 2-110 56-165 (180)
107 cd04154 Arl2 Arl2 subfamily. 99.8 3E-18 6.6E-23 124.4 10.8 101 2-105 65-172 (173)
108 KOG3883|consensus 99.8 8.5E-18 1.8E-22 117.2 11.9 107 2-109 67-176 (198)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 5.1E-18 1.1E-22 124.6 11.1 105 2-109 59-171 (183)
110 cd01893 Miro1 Miro1 subfamily. 99.8 1.3E-17 2.9E-22 120.3 11.8 105 2-109 54-165 (166)
111 cd00876 Ras Ras family. The R 99.8 1.8E-17 4E-22 117.9 11.7 104 2-106 54-159 (160)
112 cd04161 Arl2l1_Arl13_like Arl2 99.7 3.9E-18 8.4E-23 123.4 7.6 103 2-105 50-166 (167)
113 cd00157 Rho Rho (Ras homology) 99.7 3.7E-17 8E-22 117.9 11.4 101 2-105 55-170 (171)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 3.8E-17 8.3E-22 118.9 11.0 101 2-105 66-173 (174)
115 cd00879 Sar1 Sar1 subfamily. 99.7 3.3E-17 7E-22 120.6 10.6 102 2-106 70-189 (190)
116 cd04157 Arl6 Arl6 subfamily. 99.7 4.7E-17 1E-21 116.3 10.7 101 2-105 52-161 (162)
117 cd04102 RabL3 RabL3 (Rab-like3 99.7 6.7E-17 1.5E-21 120.5 11.4 104 2-105 61-197 (202)
118 cd00154 Rab Rab family. Rab G 99.7 8E-17 1.7E-21 113.9 11.1 101 2-104 56-158 (159)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.7 3.3E-17 7.3E-22 117.0 9.1 101 2-105 51-159 (160)
120 cd04151 Arl1 Arl1 subfamily. 99.7 2.4E-17 5.2E-22 117.9 8.1 101 2-105 50-157 (158)
121 PTZ00132 GTP-binding nuclear p 99.7 1.9E-16 4.1E-21 119.0 13.3 107 2-113 65-173 (215)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.1E-16 2.3E-21 115.2 10.9 101 2-105 57-166 (167)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.7 9.7E-17 2.1E-21 114.5 8.9 101 2-105 50-157 (158)
124 smart00178 SAR Sar1p-like memb 99.7 4.5E-16 9.8E-21 114.3 10.6 102 2-106 68-183 (184)
125 cd01890 LepA LepA subfamily. 99.7 1.1E-15 2.5E-20 111.1 10.5 98 2-107 74-176 (179)
126 TIGR00157 ribosome small subun 99.6 7.8E-16 1.7E-20 118.0 9.2 91 9-105 29-120 (245)
127 cd01898 Obg Obg subfamily. Th 99.6 1.6E-15 3.5E-20 109.2 10.3 103 2-106 55-169 (170)
128 PRK12299 obgE GTPase CgtA; Rev 99.6 3.4E-15 7.4E-20 119.1 11.1 107 2-109 213-329 (335)
129 PLN00023 GTP-binding protein; 99.6 3.6E-15 7.7E-20 117.4 9.7 81 2-82 90-189 (334)
130 PF00025 Arf: ADP-ribosylation 99.6 1.2E-14 2.7E-19 106.0 11.9 102 3-107 66-175 (175)
131 cd01897 NOG NOG1 is a nucleola 99.6 7.8E-15 1.7E-19 105.5 9.5 87 16-107 79-167 (168)
132 cd04159 Arl10_like Arl10-like 99.6 6.8E-15 1.5E-19 104.0 8.7 101 2-105 51-158 (159)
133 TIGR02528 EutP ethanolamine ut 99.6 3.7E-15 8E-20 104.6 6.4 82 13-104 59-141 (142)
134 cd04155 Arl3 Arl3 subfamily. 99.6 1.2E-14 2.6E-19 105.2 9.0 101 2-105 65-172 (173)
135 TIGR02729 Obg_CgtA Obg family 99.5 1.1E-13 2.4E-18 110.2 10.7 104 2-107 212-328 (329)
136 KOG0096|consensus 99.5 1.2E-14 2.7E-19 104.7 4.5 107 2-113 66-174 (216)
137 cd01878 HflX HflX subfamily. 99.5 1.4E-13 3.1E-18 102.4 9.4 87 14-107 118-204 (204)
138 KOG0073|consensus 99.5 5.6E-13 1.2E-17 94.1 11.3 104 3-109 68-179 (185)
139 cd01881 Obg_like The Obg-like 99.5 1.7E-13 3.8E-18 98.9 8.9 94 12-106 70-175 (176)
140 KOG4423|consensus 99.5 7.1E-14 1.5E-18 100.6 5.6 109 2-111 82-197 (229)
141 cd04171 SelB SelB subfamily. 99.5 3.2E-13 6.8E-18 96.4 8.9 96 2-105 58-163 (164)
142 KOG0070|consensus 99.5 5.9E-13 1.3E-17 95.8 10.1 104 3-109 69-179 (181)
143 TIGR00436 era GTP-binding prot 99.5 3.9E-13 8.5E-18 104.5 9.7 112 2-121 55-177 (270)
144 cd01879 FeoB Ferrous iron tran 99.5 7.6E-13 1.6E-17 94.0 10.4 96 2-106 50-155 (158)
145 PRK15467 ethanolamine utilizat 99.5 5.4E-13 1.2E-17 95.8 9.5 97 2-109 44-148 (158)
146 PRK15494 era GTPase Era; Provi 99.5 4.4E-13 9.5E-18 107.4 9.9 114 2-125 107-233 (339)
147 KOG0075|consensus 99.5 1.8E-13 3.8E-18 95.1 6.4 103 3-108 73-182 (186)
148 COG1100 GTPase SAR1 and relate 99.4 8.2E-13 1.8E-17 99.1 10.2 108 2-111 61-188 (219)
149 cd00882 Ras_like_GTPase Ras-li 99.4 1.4E-12 3E-17 90.5 10.7 102 2-104 52-156 (157)
150 PRK12297 obgE GTPase CgtA; Rev 99.4 3.4E-12 7.4E-17 104.6 12.3 106 2-112 213-331 (424)
151 KOG0076|consensus 99.4 5.1E-13 1.1E-17 95.2 5.9 105 3-110 77-189 (197)
152 TIGR03156 GTP_HflX GTP-binding 99.4 3.2E-12 6.9E-17 102.8 10.2 86 13-106 265-350 (351)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.4 2.6E-12 5.7E-17 106.1 9.8 94 2-109 258-361 (442)
154 cd01891 TypA_BipA TypA (tyrosi 99.4 2.8E-12 6E-17 94.9 8.8 90 2-97 72-171 (194)
155 TIGR01393 lepA GTP-binding pro 99.4 2.9E-12 6.2E-17 109.3 9.8 100 2-109 77-181 (595)
156 cd01894 EngA1 EngA1 subfamily. 99.3 6.3E-12 1.4E-16 88.9 9.0 95 2-107 52-157 (157)
157 PRK05291 trmE tRNA modificatio 99.3 4E-12 8.6E-17 105.3 8.9 92 2-109 270-371 (449)
158 PRK03003 GTP-binding protein D 99.3 3.5E-12 7.7E-17 106.3 8.5 92 12-109 289-383 (472)
159 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 8.8E-12 1.9E-16 89.4 9.1 98 2-108 57-166 (168)
160 TIGR00231 small_GTP small GTP- 99.3 1.4E-11 3E-16 86.5 9.9 99 2-103 57-159 (161)
161 cd01888 eIF2_gamma eIF2-gamma 99.3 4.9E-12 1.1E-16 94.4 7.6 100 2-109 90-200 (203)
162 PRK11058 GTPase HflX; Provisio 99.3 1.5E-11 3.3E-16 101.1 11.1 101 2-109 252-363 (426)
163 PRK03003 GTP-binding protein D 99.3 1.2E-11 2.6E-16 103.1 9.9 98 2-109 93-200 (472)
164 KOG0071|consensus 99.3 5.5E-12 1.2E-16 87.1 6.3 103 3-108 69-178 (180)
165 PRK12298 obgE GTPase CgtA; Rev 99.3 1.5E-11 3.1E-16 100.2 9.9 109 13-123 234-348 (390)
166 cd00881 GTP_translation_factor 99.3 2.6E-11 5.7E-16 88.3 9.7 101 2-108 69-187 (189)
167 cd04164 trmE TrmE (MnmE, ThdF, 99.3 2.7E-11 5.9E-16 85.5 9.2 91 2-107 56-156 (157)
168 PRK00089 era GTPase Era; Revie 99.3 3.3E-11 7.2E-16 94.6 10.4 104 11-120 79-183 (292)
169 PRK04213 GTP-binding protein; 99.3 4.6E-12 1E-16 94.0 4.6 56 49-109 129-193 (201)
170 TIGR03594 GTPase_EngA ribosome 99.3 3.9E-11 8.4E-16 98.9 10.4 92 11-109 249-345 (429)
171 cd01855 YqeH YqeH. YqeH is an 99.3 3.1E-11 6.8E-16 89.0 8.8 91 9-108 27-125 (190)
172 PRK05433 GTP-binding protein L 99.2 4.5E-11 9.8E-16 102.1 10.2 100 2-109 81-185 (600)
173 PRK12289 GTPase RsgA; Reviewed 99.2 3.2E-11 6.9E-16 96.8 8.8 91 9-106 82-173 (352)
174 PRK12296 obgE GTPase CgtA; Rev 99.2 4.8E-11 1E-15 99.3 9.1 96 13-110 233-342 (500)
175 TIGR00437 feoB ferrous iron tr 99.2 4.9E-11 1.1E-15 101.8 9.2 97 2-107 48-154 (591)
176 cd00880 Era_like Era (E. coli 99.2 1.1E-10 2.4E-15 81.9 9.1 99 2-106 52-162 (163)
177 KOG0072|consensus 99.2 5.2E-11 1.1E-15 82.7 6.8 101 8-109 77-180 (182)
178 cd01854 YjeQ_engC YjeQ/EngC. 99.2 9.1E-11 2E-15 92.0 8.8 86 13-105 75-161 (287)
179 cd01895 EngA2 EngA2 subfamily. 99.2 3.4E-10 7.4E-15 81.0 10.5 89 12-106 80-173 (174)
180 KOG1673|consensus 99.2 1.3E-10 2.8E-15 81.7 7.6 109 3-114 77-192 (205)
181 PRK00098 GTPase RsgA; Reviewed 99.2 1.2E-10 2.6E-15 91.8 8.2 86 14-105 78-164 (298)
182 cd01859 MJ1464 MJ1464. This f 99.2 1.3E-10 2.7E-15 83.1 7.2 93 9-109 5-97 (156)
183 PRK12288 GTPase RsgA; Reviewed 99.1 2.8E-10 6E-15 91.4 9.1 88 14-106 118-206 (347)
184 COG2229 Predicted GTPase [Gene 99.1 6.6E-10 1.4E-14 80.2 9.9 98 2-106 75-176 (187)
185 cd04163 Era Era subfamily. Er 99.1 4.1E-10 8.9E-15 79.8 9.0 89 11-106 77-167 (168)
186 cd01889 SelB_euk SelB subfamil 99.1 2.7E-10 5.7E-15 84.1 7.9 101 2-109 75-187 (192)
187 TIGR00487 IF-2 translation ini 99.1 6.2E-10 1.3E-14 94.9 11.0 92 2-105 142-247 (587)
188 PF08477 Miro: Miro-like prote 99.1 1.5E-10 3.2E-15 78.7 5.8 58 2-61 57-119 (119)
189 TIGR00475 selB selenocysteine- 99.1 2.7E-10 5.9E-15 97.1 8.4 99 2-109 57-167 (581)
190 TIGR00491 aIF-2 translation in 99.1 6E-10 1.3E-14 94.9 10.2 95 2-105 76-213 (590)
191 CHL00189 infB translation init 99.1 5.5E-10 1.2E-14 96.9 9.7 94 2-107 302-409 (742)
192 TIGR03597 GTPase_YqeH ribosome 99.1 6.5E-10 1.4E-14 89.8 8.7 89 9-106 56-151 (360)
193 PRK00093 GTP-binding protein D 99.1 1.1E-09 2.5E-14 90.4 10.3 93 2-107 56-161 (435)
194 KOG1707|consensus 99.1 2E-10 4.4E-15 95.3 5.5 100 9-109 72-176 (625)
195 PRK05306 infB translation init 99.1 1.1E-09 2.4E-14 95.8 10.3 93 2-106 344-450 (787)
196 PRK09518 bifunctional cytidyla 99.1 8.5E-10 1.8E-14 96.3 9.5 90 12-109 528-622 (712)
197 PRK09518 bifunctional cytidyla 99.0 1.3E-09 2.8E-14 95.2 10.2 97 2-109 330-437 (712)
198 COG1159 Era GTPase [General fu 99.0 1E-09 2.3E-14 84.9 8.3 121 2-129 61-193 (298)
199 PF00009 GTP_EFTU: Elongation 99.0 1.4E-09 3.1E-14 80.0 8.0 101 2-108 77-187 (188)
200 PRK00093 GTP-binding protein D 99.0 1.8E-09 4E-14 89.2 9.1 91 12-109 251-345 (435)
201 TIGR03594 GTPase_EngA ribosome 99.0 2.8E-09 6.1E-14 87.9 10.0 90 9-109 71-161 (429)
202 TIGR00483 EF-1_alpha translati 99.0 6.6E-10 1.4E-14 91.7 6.1 96 2-100 92-199 (426)
203 TIGR03680 eif2g_arch translati 99.0 1.5E-09 3.2E-14 89.1 7.5 99 2-108 87-196 (406)
204 cd01896 DRG The developmentall 99.0 7.6E-09 1.6E-13 78.9 10.6 50 50-107 176-225 (233)
205 TIGR01394 TypA_BipA GTP-bindin 99.0 2.7E-09 5.8E-14 91.2 8.3 104 2-110 71-193 (594)
206 PRK04000 translation initiatio 99.0 3.6E-09 7.8E-14 86.9 8.8 99 2-109 92-202 (411)
207 KOG0074|consensus 99.0 8.6E-10 1.9E-14 76.5 4.2 97 8-106 77-177 (185)
208 PRK00454 engB GTP-binding prot 98.9 5.2E-09 1.1E-13 77.0 8.4 95 9-109 96-195 (196)
209 PRK10512 selenocysteinyl-tRNA- 98.9 6.3E-09 1.4E-13 89.3 8.9 99 2-109 58-167 (614)
210 PF02421 FeoB_N: Ferrous iron 98.9 2.6E-09 5.7E-14 76.3 5.6 86 9-103 69-156 (156)
211 PRK12317 elongation factor 1-a 98.9 4.6E-09 9.9E-14 86.7 7.1 96 2-100 91-197 (425)
212 cd01858 NGP_1 NGP-1. Autoanti 98.9 8.5E-09 1.9E-13 73.8 7.6 88 13-107 5-94 (157)
213 PRK04004 translation initiatio 98.9 1.8E-08 3.8E-13 86.1 10.3 95 2-105 78-215 (586)
214 cd04105 SR_beta Signal recogni 98.9 1.6E-08 3.5E-13 75.5 8.6 63 2-64 55-123 (203)
215 PRK09554 feoB ferrous iron tra 98.9 2.4E-08 5.1E-13 87.7 10.7 88 11-107 78-167 (772)
216 PRK14845 translation initiatio 98.8 2.8E-08 6.1E-13 89.1 10.7 96 2-106 533-671 (1049)
217 cd04166 CysN_ATPS CysN_ATPS su 98.8 9.3E-09 2E-13 77.0 6.5 93 2-99 84-185 (208)
218 cd01849 YlqF_related_GTPase Yl 98.8 3.2E-08 6.9E-13 70.7 7.5 83 18-107 1-84 (155)
219 PRK09866 hypothetical protein; 98.8 1.1E-07 2.3E-12 81.0 11.2 100 2-105 237-350 (741)
220 COG0486 ThdF Predicted GTPase 98.8 4.7E-08 1E-12 79.9 8.7 97 2-110 272-378 (454)
221 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.6E-08 7.7E-13 69.4 6.8 76 11-93 6-83 (141)
222 TIGR03598 GTPase_YsxC ribosome 98.7 1.8E-08 3.9E-13 73.5 5.4 82 10-97 91-179 (179)
223 cd01856 YlqF YlqF. Proteins o 98.7 5.1E-08 1.1E-12 70.8 7.4 88 11-108 14-101 (171)
224 COG2262 HflX GTPases [General 98.7 1.6E-07 3.5E-12 75.7 10.3 90 14-110 269-358 (411)
225 COG1160 Predicted GTPases [Gen 98.7 1.3E-07 2.9E-12 77.1 10.0 94 2-108 58-165 (444)
226 cd04167 Snu114p Snu114p subfam 98.7 6.9E-08 1.5E-12 72.5 7.5 57 2-63 78-136 (213)
227 cd04165 GTPBP1_like GTPBP1-lik 98.7 1.5E-07 3.2E-12 71.4 9.1 97 2-104 91-219 (224)
228 PRK10218 GTP-binding protein; 98.7 1.5E-07 3.2E-12 80.7 10.0 104 2-110 75-197 (607)
229 PRK13796 GTPase YqeH; Provisio 98.7 1.4E-07 3.1E-12 76.4 9.2 84 14-106 66-157 (365)
230 cd04168 TetM_like Tet(M)-like 98.7 3.2E-07 6.8E-12 70.2 10.5 57 2-63 71-129 (237)
231 KOG1489|consensus 98.7 1.6E-07 3.4E-12 73.5 8.8 94 8-105 263-364 (366)
232 cd01883 EF1_alpha Eukaryotic e 98.6 3.7E-08 8.1E-13 74.3 4.7 91 2-97 84-194 (219)
233 smart00010 small_GTPase Small 98.6 1.3E-08 2.7E-13 69.3 1.8 76 10-97 40-115 (124)
234 PLN00043 elongation factor 1-a 98.6 1.5E-07 3.3E-12 78.1 7.5 90 2-98 92-203 (447)
235 COG0532 InfB Translation initi 98.6 6.1E-07 1.3E-11 74.4 10.8 93 2-106 62-168 (509)
236 COG1160 Predicted GTPases [Gen 98.6 8.3E-07 1.8E-11 72.5 10.9 102 2-109 233-352 (444)
237 PRK13768 GTPase; Provisional 98.6 3.6E-07 7.8E-12 70.5 8.5 88 17-109 129-248 (253)
238 KOG0462|consensus 98.6 4.3E-07 9.4E-12 75.5 9.0 104 2-111 132-238 (650)
239 cd00066 G-alpha G protein alph 98.6 6.7E-07 1.5E-11 71.2 9.9 107 2-109 168-312 (317)
240 TIGR03596 GTPase_YlqF ribosome 98.5 4.2E-07 9.1E-12 71.0 8.4 89 11-109 16-104 (276)
241 cd01885 EF2 EF2 (for archaea a 98.5 4.7E-07 1E-11 68.5 8.0 66 2-72 80-148 (222)
242 PRK01889 GTPase RsgA; Reviewed 98.5 5.1E-07 1.1E-11 73.0 8.6 83 14-104 110-193 (356)
243 cd01876 YihA_EngB The YihA (En 98.5 4.6E-07 1E-11 64.2 7.5 90 9-106 71-169 (170)
244 PF10662 PduV-EutP: Ethanolami 98.5 3.9E-07 8.4E-12 64.1 6.8 80 14-104 61-142 (143)
245 TIGR00101 ureG urease accessor 98.5 4.6E-07 1E-11 67.5 7.3 80 17-108 113-196 (199)
246 PRK12736 elongation factor Tu; 98.5 5.2E-07 1.1E-11 73.9 8.2 102 2-108 82-201 (394)
247 COG0481 LepA Membrane GTPase L 98.5 1.4E-06 3.1E-11 71.5 9.7 102 2-111 83-189 (603)
248 COG0536 Obg Predicted GTPase [ 98.5 8.3E-07 1.8E-11 70.1 8.0 97 14-111 235-336 (369)
249 cd01884 EF_Tu EF-Tu subfamily. 98.4 1.3E-06 2.8E-11 64.9 8.4 89 2-96 72-171 (195)
250 PTZ00327 eukaryotic translatio 98.4 1.4E-06 3E-11 72.5 9.3 104 2-109 124-234 (460)
251 KOG0077|consensus 98.4 4.7E-07 1E-11 64.5 5.5 95 9-106 80-191 (193)
252 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.1E-06 2.4E-11 69.0 7.9 89 11-109 19-107 (287)
253 smart00275 G_alpha G protein a 98.4 4.5E-06 9.8E-11 67.1 11.2 106 3-109 192-335 (342)
254 PRK00741 prfC peptide chain re 98.4 1.8E-06 3.9E-11 73.1 8.8 57 2-63 86-144 (526)
255 TIGR00485 EF-Tu translation el 98.4 9.7E-07 2.1E-11 72.3 6.9 84 2-93 82-179 (394)
256 PRK13351 elongation factor G; 98.4 2.9E-06 6.3E-11 74.1 9.8 58 2-64 80-139 (687)
257 KOG1423|consensus 98.3 3.3E-06 7.2E-11 66.0 8.0 102 12-118 151-281 (379)
258 PRK12735 elongation factor Tu; 98.3 2.7E-06 5.7E-11 69.8 7.8 102 2-108 82-203 (396)
259 COG1162 Predicted GTPases [Gen 98.3 6.1E-06 1.3E-10 64.6 9.1 93 9-106 72-165 (301)
260 cd01899 Ygr210 Ygr210 subfamil 98.3 5.7E-06 1.2E-10 65.9 8.9 60 50-114 214-275 (318)
261 TIGR00073 hypB hydrogenase acc 98.3 4.4E-06 9.4E-11 62.5 7.9 55 51-106 149-205 (207)
262 KOG1145|consensus 98.2 2.8E-05 6E-10 65.1 10.7 93 2-106 208-314 (683)
263 COG0370 FeoB Fe2+ transport sy 98.2 9.2E-06 2E-10 69.4 8.1 101 2-111 64-167 (653)
264 TIGR02034 CysN sulfate adenyly 98.2 4.9E-06 1.1E-10 68.4 6.4 92 2-98 87-187 (406)
265 cd04169 RF3 RF3 subfamily. Pe 98.2 1.1E-05 2.4E-10 62.8 7.9 58 2-64 78-137 (267)
266 PRK12740 elongation factor G; 98.1 1.7E-05 3.7E-10 69.2 9.8 57 2-63 67-125 (668)
267 PRK05124 cysN sulfate adenylyl 98.1 4.8E-06 1E-10 69.8 5.8 93 2-99 114-216 (474)
268 PRK05506 bifunctional sulfate 98.0 1.9E-05 4E-10 68.5 6.9 92 2-98 111-211 (632)
269 CHL00071 tufA elongation facto 98.0 3E-05 6.5E-10 63.9 7.7 87 2-93 82-179 (409)
270 cd01886 EF-G Elongation factor 98.0 9.7E-06 2.1E-10 63.2 4.5 58 2-64 71-130 (270)
271 PF06858 NOG1: Nucleolar GTP-b 98.0 3.7E-05 8E-10 45.3 5.8 43 17-61 14-58 (58)
272 cd04104 p47_IIGP_like p47 (47- 97.9 9.4E-05 2E-09 54.8 8.8 99 2-109 59-185 (197)
273 KOG0705|consensus 97.9 2.5E-05 5.5E-10 65.3 6.1 101 9-110 88-191 (749)
274 PLN03127 Elongation factor Tu; 97.9 7.2E-05 1.6E-09 62.3 8.8 101 2-108 131-252 (447)
275 PF04670 Gtr1_RagA: Gtr1/RagA 97.9 0.00014 3.1E-09 55.4 9.7 105 3-111 56-179 (232)
276 PRK00049 elongation factor Tu; 97.9 5.3E-05 1.1E-09 62.2 7.6 101 2-107 82-202 (396)
277 PF09439 SRPRB: Signal recogni 97.9 2.3E-05 4.9E-10 57.4 4.8 63 2-64 56-126 (181)
278 KOG1707|consensus 97.9 4.6E-05 1E-09 64.0 7.0 90 15-109 494-584 (625)
279 TIGR00484 EF-G translation elo 97.9 6.9E-05 1.5E-09 65.6 8.4 58 2-64 82-141 (689)
280 PRK09602 translation-associate 97.8 0.00023 5E-09 58.4 10.1 63 50-117 217-280 (396)
281 TIGR00750 lao LAO/AO transport 97.8 7E-05 1.5E-09 59.2 6.8 86 13-108 144-238 (300)
282 KOG3905|consensus 97.8 0.00033 7.2E-09 55.5 10.3 61 50-111 222-293 (473)
283 PLN03126 Elongation factor Tu; 97.8 5.5E-05 1.2E-09 63.5 6.3 87 2-93 151-248 (478)
284 PRK09435 membrane ATPase/prote 97.8 0.0002 4.4E-09 57.3 9.3 96 2-108 156-260 (332)
285 PTZ00141 elongation factor 1- 97.7 8.3E-05 1.8E-09 61.9 6.5 92 2-98 92-203 (446)
286 cd04170 EF-G_bact Elongation f 97.7 0.00012 2.7E-09 56.8 7.0 92 2-101 71-166 (268)
287 COG1084 Predicted GTPase [Gene 97.7 0.00019 4.2E-09 56.7 8.0 87 17-109 248-337 (346)
288 TIGR00503 prfC peptide chain r 97.7 7.8E-05 1.7E-09 63.3 6.2 58 2-64 87-146 (527)
289 COG4917 EutP Ethanolamine util 97.7 0.00023 5E-09 48.8 6.7 81 14-105 62-143 (148)
290 KOG1191|consensus 97.7 8.6E-05 1.9E-09 61.4 5.4 106 2-109 323-451 (531)
291 KOG0090|consensus 97.6 0.00027 5.9E-09 52.7 7.3 102 3-106 90-237 (238)
292 COG1163 DRG Predicted GTPase [ 97.6 0.00069 1.5E-08 53.6 9.3 51 51-109 240-290 (365)
293 PRK12739 elongation factor G; 97.6 0.00046 9.9E-09 60.6 9.3 57 2-63 80-138 (691)
294 KOG1490|consensus 97.5 0.00049 1.1E-08 57.3 8.3 90 18-110 249-343 (620)
295 COG2895 CysN GTPases - Sulfate 97.5 0.00034 7.3E-09 56.0 6.7 89 2-97 93-192 (431)
296 PF00503 G-alpha: G-protein al 97.5 0.00056 1.2E-08 56.0 7.7 104 3-107 244-389 (389)
297 KOG0082|consensus 97.4 0.0015 3.3E-08 52.5 9.7 106 3-109 203-345 (354)
298 COG5257 GCD11 Translation init 97.4 0.00044 9.5E-09 54.7 6.1 87 17-111 110-205 (415)
299 COG0218 Predicted GTPase [Gene 97.4 0.0018 3.9E-08 48.0 8.8 94 9-109 96-198 (200)
300 KOG1144|consensus 97.4 0.00042 9.1E-09 60.1 6.1 98 2-108 547-687 (1064)
301 COG0378 HypB Ni2+-binding GTPa 97.3 0.00048 1E-08 50.7 4.7 53 54-107 146-200 (202)
302 PF03029 ATP_bind_1: Conserved 97.3 0.00058 1.3E-08 52.3 5.2 100 2-106 98-235 (238)
303 cd04178 Nucleostemin_like Nucl 97.2 0.00066 1.4E-08 49.4 5.0 44 18-64 1-44 (172)
304 PF05783 DLIC: Dynein light in 97.2 0.0037 8E-08 52.4 9.7 62 51-113 197-269 (472)
305 PRK10463 hydrogenase nickel in 97.2 0.00073 1.6E-08 53.0 5.0 55 51-106 231-287 (290)
306 cd01852 AIG1 AIG1 (avrRpt2-ind 97.1 0.012 2.6E-07 43.3 10.9 93 14-109 81-185 (196)
307 COG1217 TypA Predicted membran 97.1 0.0048 1E-07 51.3 9.1 105 2-111 75-198 (603)
308 KOG1532|consensus 97.0 0.0064 1.4E-07 47.4 8.5 103 2-109 123-265 (366)
309 COG5256 TEF1 Translation elong 97.0 0.0015 3.3E-08 53.2 5.4 94 2-99 92-202 (428)
310 TIGR00490 aEF-2 translation el 97.0 0.0015 3.2E-08 57.7 5.5 57 2-63 93-151 (720)
311 COG1161 Predicted GTPases [Gen 97.0 0.0015 3.2E-08 52.3 5.1 83 9-100 27-109 (322)
312 COG3276 SelB Selenocysteine-sp 96.9 0.0058 1.2E-07 50.2 8.0 96 3-107 58-161 (447)
313 TIGR02836 spore_IV_A stage IV 96.8 0.024 5.3E-07 46.8 11.1 94 10-111 137-237 (492)
314 cd01850 CDC_Septin CDC/Septin. 96.8 0.0013 2.7E-08 51.5 3.3 76 12-92 108-187 (276)
315 PRK00007 elongation factor G; 96.7 0.0067 1.4E-07 53.4 7.7 58 2-64 82-141 (693)
316 PF01926 MMR_HSR1: 50S ribosom 96.6 0.013 2.7E-07 39.3 6.6 41 13-59 76-116 (116)
317 cd03110 Fer4_NifH_child This p 96.4 0.036 7.9E-07 40.1 8.8 69 9-85 107-175 (179)
318 KOG2423|consensus 96.4 0.015 3.3E-07 47.5 7.1 91 3-100 197-292 (572)
319 KOG1424|consensus 96.4 0.0093 2E-07 50.0 5.9 71 14-91 172-244 (562)
320 cd01882 BMS1 Bms1. Bms1 is an 96.4 0.017 3.7E-07 43.7 6.9 76 13-93 100-182 (225)
321 PF00350 Dynamin_N: Dynamin fa 96.3 0.0059 1.3E-07 43.5 3.8 48 9-60 121-168 (168)
322 KOG4273|consensus 96.1 0.016 3.5E-07 44.6 5.7 90 17-110 79-224 (418)
323 PRK07560 elongation factor EF- 95.9 0.014 3.1E-07 51.6 5.2 57 2-63 94-152 (731)
324 PTZ00416 elongation factor 2; 95.8 0.013 2.7E-07 52.8 4.7 57 2-63 99-157 (836)
325 PLN00116 translation elongatio 95.8 0.014 3E-07 52.5 4.8 57 2-63 105-163 (843)
326 KOG0458|consensus 95.8 0.021 4.4E-07 48.6 5.4 94 2-99 262-373 (603)
327 COG1703 ArgK Putative periplas 95.7 0.059 1.3E-06 42.5 7.3 85 14-108 162-254 (323)
328 KOG0410|consensus 95.7 0.011 2.3E-07 47.2 3.2 85 13-109 254-342 (410)
329 KOG3886|consensus 95.7 0.064 1.4E-06 40.9 7.1 95 11-109 76-179 (295)
330 PF03308 ArgK: ArgK protein; 95.7 0.008 1.7E-07 46.4 2.4 84 14-107 140-229 (266)
331 PF11111 CENP-M: Centromere pr 95.6 0.19 4.1E-06 36.5 9.2 90 16-108 64-153 (176)
332 smart00053 DYNc Dynamin, GTPas 95.5 0.047 1E-06 41.9 6.1 52 9-64 154-206 (240)
333 KOG2484|consensus 95.3 0.03 6.6E-07 45.6 4.7 71 14-90 144-216 (435)
334 KOG0461|consensus 95.2 0.1 2.2E-06 42.1 7.1 92 9-109 83-194 (522)
335 COG0050 TufB GTPases - transla 95.2 0.084 1.8E-06 41.7 6.4 86 16-109 98-202 (394)
336 KOG0447|consensus 95.1 0.094 2E-06 44.8 7.1 75 1-78 426-507 (980)
337 KOG0468|consensus 94.7 0.054 1.2E-06 47.1 4.6 56 2-62 204-261 (971)
338 COG1149 MinD superfamily P-loo 94.5 0.24 5.1E-06 38.6 7.4 63 12-85 181-243 (284)
339 COG4108 PrfC Peptide chain rel 94.5 0.16 3.4E-06 42.2 6.7 58 2-64 88-147 (528)
340 COG3596 Predicted GTPase [Gene 94.4 0.22 4.7E-06 39.0 7.0 103 2-109 94-223 (296)
341 COG3640 CooC CO dehydrogenase 94.1 0.43 9.3E-06 36.5 7.8 71 2-83 142-212 (255)
342 PF14331 ImcF-related_N: ImcF- 94.0 0.17 3.8E-06 39.3 5.8 48 16-64 25-83 (266)
343 KOG3887|consensus 93.7 0.57 1.2E-05 36.2 7.9 107 3-112 83-206 (347)
344 KOG0099|consensus 93.7 0.31 6.7E-06 38.0 6.5 60 3-62 210-281 (379)
345 PRK13505 formate--tetrahydrofo 93.0 0.85 1.8E-05 39.1 8.6 71 32-109 358-430 (557)
346 PF09419 PGP_phosphatase: Mito 92.2 2.6 5.7E-05 30.5 9.3 86 14-104 36-128 (168)
347 COG5258 GTPBP1 GTPase [General 92.2 1.1 2.4E-05 36.9 8.0 101 2-109 208-339 (527)
348 COG0480 FusA Translation elong 92.1 0.26 5.7E-06 43.5 4.8 56 2-62 83-140 (697)
349 KOG0466|consensus 91.7 0.25 5.4E-06 39.3 3.8 87 18-112 150-245 (466)
350 KOG1954|consensus 91.1 0.27 5.9E-06 40.1 3.5 52 9-64 174-225 (532)
351 cd02038 FleN-like FleN is a me 90.0 1.4 3.1E-05 30.5 6.1 51 9-62 59-109 (139)
352 TIGR00991 3a0901s02IAP34 GTP-b 88.3 2.4 5.2E-05 33.9 6.9 53 16-69 118-172 (313)
353 cd03111 CpaE_like This protein 87.9 3.1 6.7E-05 27.4 6.3 50 9-59 57-106 (106)
354 COG0523 Putative GTPases (G3E 86.6 3.3 7.1E-05 33.3 6.8 67 16-90 116-185 (323)
355 KOG0460|consensus 85.5 4 8.6E-05 33.2 6.6 68 16-90 140-218 (449)
356 KOG2485|consensus 85.4 2.4 5.3E-05 33.8 5.4 84 11-103 41-126 (335)
357 COG4963 CpaE Flp pilus assembl 85.1 5.7 0.00012 32.4 7.5 54 8-63 231-284 (366)
358 TIGR03348 VI_IcmF type VI secr 84.1 1.4 2.9E-05 41.5 4.1 48 15-63 200-256 (1169)
359 cd02036 MinD Bacterial cell di 84.0 11 0.00024 26.6 8.1 71 9-85 77-147 (179)
360 KOG1486|consensus 81.9 6.6 0.00014 30.7 6.3 53 49-109 237-289 (364)
361 PF04548 AIG1: AIG1 family; I 81.8 6.6 0.00014 29.2 6.4 95 14-111 81-189 (212)
362 PHA02518 ParA-like protein; Pr 81.0 15 0.00034 26.7 8.1 59 2-62 84-145 (211)
363 PRK13695 putative NTPase; Prov 80.7 18 0.00039 25.8 9.4 82 10-107 90-172 (174)
364 PTZ00258 GTP-binding protein; 80.6 2.5 5.4E-05 34.9 3.9 44 50-93 220-266 (390)
365 COG0012 Predicted GTPase, prob 80.3 5.2 0.00011 32.7 5.6 44 49-93 205-250 (372)
366 cd03114 ArgK-like The function 79.3 5.5 0.00012 28.0 4.9 50 2-61 99-148 (148)
367 KOG0448|consensus 78.8 17 0.00036 32.3 8.4 51 9-64 225-275 (749)
368 cd03112 CobW_like The function 78.8 3.6 7.9E-05 29.2 3.9 42 14-62 116-158 (158)
369 TIGR00064 ftsY signal recognit 78.6 9.4 0.0002 29.8 6.5 69 17-100 191-260 (272)
370 KOG3929|consensus 77.0 4.6 0.0001 31.6 4.1 16 48-63 188-203 (363)
371 PF03193 DUF258: Protein of un 76.3 6.2 0.00013 28.4 4.5 31 73-104 4-34 (161)
372 PF10087 DUF2325: Uncharacteri 76.0 16 0.00035 23.5 6.1 17 71-87 65-81 (97)
373 cd01853 Toc34_like Toc34-like 75.9 9.3 0.0002 29.4 5.7 11 52-62 151-161 (249)
374 TIGR03371 cellulose_yhjQ cellu 75.1 28 0.0006 26.1 8.1 53 9-63 129-181 (246)
375 cd02117 NifH_like This family 74.7 32 0.00069 25.4 8.7 66 15-85 140-206 (212)
376 PF03709 OKR_DC_1_N: Orn/Lys/A 73.2 14 0.0003 24.8 5.4 42 16-60 36-77 (115)
377 cd00477 FTHFS Formyltetrahydro 71.3 26 0.00057 30.0 7.6 70 32-108 342-413 (524)
378 TIGR01968 minD_bact septum sit 70.2 34 0.00073 25.8 7.7 50 9-62 126-175 (261)
379 PF08438 MMR_HSR1_C: GTPase of 69.7 5.7 0.00012 26.7 2.8 31 56-90 1-32 (109)
380 COG2179 Predicted hydrolase of 69.5 20 0.00044 26.0 5.7 48 30-90 46-93 (175)
381 COG2759 MIS1 Formyltetrahydrof 68.7 30 0.00064 29.4 7.2 72 32-110 355-428 (554)
382 PRK13507 formate--tetrahydrofo 68.2 38 0.00083 29.4 7.9 69 33-108 388-458 (587)
383 PF09547 Spore_IV_A: Stage IV 66.1 82 0.0018 26.7 9.3 75 29-111 162-237 (492)
384 PF01268 FTHFS: Formate--tetra 66.0 16 0.00035 31.5 5.4 69 32-107 357-427 (557)
385 KOG0467|consensus 65.6 13 0.00028 33.4 4.8 51 2-61 79-135 (887)
386 PRK10416 signal recognition pa 65.2 34 0.00074 27.4 6.9 70 16-100 232-302 (318)
387 PRK14974 cell division protein 64.8 28 0.0006 28.2 6.4 70 16-100 252-322 (336)
388 PRK13185 chlL protochlorophyll 63.1 66 0.0014 24.6 8.3 62 14-83 138-200 (270)
389 COG1010 CobJ Precorrin-3B meth 63.0 26 0.00057 26.9 5.5 49 11-60 149-197 (249)
390 KOG2486|consensus 62.9 1.9 4.2E-05 33.9 -0.5 89 9-105 209-313 (320)
391 PF02492 cobW: CobW/HypB/UreG, 61.6 9.9 0.00022 27.4 3.0 43 16-64 113-155 (178)
392 PF01656 CbiA: CobQ/CobB/MinD/ 61.6 23 0.0005 25.3 5.0 53 9-63 109-161 (195)
393 TIGR01969 minD_arch cell divis 61.2 67 0.0014 24.0 9.4 49 9-62 123-172 (251)
394 KOG1249|consensus 60.9 4 8.7E-05 34.9 1.0 83 18-108 112-211 (572)
395 cd02032 Bchl_like This family 60.2 75 0.0016 24.3 8.0 48 14-62 136-184 (267)
396 PRK09601 GTP-binding protein Y 60.2 28 0.00061 28.5 5.6 43 51-93 200-243 (364)
397 PF07015 VirC1: VirC1 protein; 60.1 53 0.0012 25.1 6.8 95 2-101 91-187 (231)
398 cd02067 B12-binding B12 bindin 59.7 20 0.00044 23.8 4.1 59 18-87 50-108 (119)
399 CHL00175 minD septum-site dete 58.1 73 0.0016 24.6 7.6 49 10-62 142-190 (281)
400 PRK13506 formate--tetrahydrofo 56.8 84 0.0018 27.4 8.0 68 34-108 381-451 (578)
401 KOG0085|consensus 55.0 51 0.0011 25.6 5.9 100 9-109 215-350 (359)
402 PRK10818 cell division inhibit 54.4 82 0.0018 24.1 7.3 53 9-62 128-185 (270)
403 COG3523 IcmF Type VI protein s 54.3 23 0.0005 33.6 4.7 49 14-63 212-269 (1188)
404 PLN02759 Formate--tetrahydrofo 51.6 77 0.0017 27.9 7.0 67 35-108 439-508 (637)
405 cd04170 EF-G_bact Elongation f 51.0 16 0.00035 28.1 2.8 26 82-108 241-266 (268)
406 PF08468 MTS_N: Methyltransfer 51.0 38 0.00083 24.1 4.5 44 14-62 67-110 (155)
407 KOG0463|consensus 51.0 45 0.00098 27.8 5.3 19 81-100 332-350 (641)
408 COG1358 RPL8A Ribosomal protei 50.4 19 0.00042 24.4 2.8 41 16-63 43-83 (116)
409 cd00959 DeoC 2-deoxyribose-5-p 50.4 1E+02 0.0022 22.8 7.7 69 15-88 81-151 (203)
410 PTZ00386 formyl tetrahydrofola 50.3 1.6E+02 0.0035 26.0 8.7 69 34-109 425-497 (625)
411 KOG1487|consensus 50.2 21 0.00046 28.1 3.2 76 16-108 206-281 (358)
412 cd02037 MRP-like MRP (Multiple 50.1 88 0.0019 22.0 7.4 43 15-62 90-133 (169)
413 cd03115 SRP The signal recogni 50.0 87 0.0019 22.1 6.4 41 16-63 112-152 (173)
414 PRK13849 putative crown gall t 49.6 87 0.0019 23.7 6.6 59 2-61 91-151 (231)
415 COG4502 5'(3')-deoxyribonucleo 48.5 35 0.00075 24.2 3.8 41 18-60 85-125 (180)
416 TIGR02475 CobW cobalamin biosy 48.3 90 0.002 25.2 6.8 44 54-101 177-223 (341)
417 TIGR01281 DPOR_bchL light-inde 47.9 1.2E+02 0.0027 23.1 8.0 48 14-62 136-184 (268)
418 KOG1143|consensus 47.9 1.3E+02 0.0029 25.2 7.5 78 17-100 275-380 (591)
419 cd02042 ParA ParA and ParB of 47.4 72 0.0016 20.2 5.9 31 9-40 54-84 (104)
420 COG1908 FrhD Coenzyme F420-red 47.0 56 0.0012 22.4 4.5 57 52-109 56-123 (132)
421 cd02990 UAS_FAF1 UAS family, F 46.7 98 0.0021 21.6 8.8 75 12-107 51-133 (136)
422 TIGR00959 ffh signal recogniti 46.7 99 0.0021 26.0 6.9 64 14-88 210-273 (428)
423 cd01900 YchF YchF subfamily. 46.6 34 0.00074 26.8 4.0 42 51-93 196-239 (274)
424 TIGR03677 rpl7ae 50S ribosomal 46.5 24 0.00053 23.8 2.8 40 16-62 42-81 (117)
425 PF01939 DUF91: Protein of unk 45.9 78 0.0017 24.2 5.7 69 11-88 139-211 (228)
426 PRK11537 putative GTP-binding 45.6 1.1E+02 0.0024 24.5 6.8 61 17-88 123-186 (318)
427 PRK06242 flavodoxin; Provision 45.5 97 0.0021 21.2 6.3 67 13-85 40-106 (150)
428 COG2813 RsmC 16S RNA G1207 met 45.5 72 0.0016 25.5 5.6 46 13-63 34-79 (300)
429 PF14784 ECIST_Cterm: C-termin 45.1 45 0.00097 23.0 3.9 41 15-55 82-123 (126)
430 cd07379 MPP_239FB Homo sapiens 45.0 33 0.00072 23.2 3.4 46 14-62 17-62 (135)
431 cd01844 SGNH_hydrolase_like_6 43.6 93 0.002 21.9 5.7 42 16-59 57-102 (177)
432 CHL00072 chlL photochlorophyll 43.4 1.6E+02 0.0035 23.1 9.6 48 14-62 136-184 (290)
433 TIGR01007 eps_fam capsular exo 42.6 80 0.0017 23.0 5.4 47 13-63 147-193 (204)
434 PF10036 RLL: Putative carniti 42.0 53 0.0012 25.4 4.4 71 24-109 17-89 (249)
435 PF05014 Nuc_deoxyrib_tr: Nucl 41.7 90 0.002 20.4 5.0 45 12-62 57-101 (113)
436 TIGR03566 FMN_reduc_MsuE FMN r 41.3 40 0.00086 24.1 3.4 47 12-59 64-110 (174)
437 PRK13556 azoreductase; Provisi 40.8 53 0.0012 24.2 4.2 34 12-45 85-118 (208)
438 TIGR00993 3a0901s04IAP86 chlor 40.2 72 0.0016 28.7 5.3 49 16-64 201-250 (763)
439 KOG0465|consensus 40.1 47 0.001 29.3 4.1 56 2-62 111-168 (721)
440 KOG0459|consensus 39.7 23 0.0005 29.6 2.1 84 15-101 179-279 (501)
441 cd01832 SGNH_hydrolase_like_1 39.4 70 0.0015 22.5 4.5 14 16-29 67-80 (185)
442 PRK00771 signal recognition pa 38.5 1.2E+02 0.0026 25.6 6.2 61 14-86 203-264 (437)
443 PRK06756 flavodoxin; Provision 38.3 57 0.0012 22.5 3.8 45 13-58 46-91 (148)
444 cd01339 LDH-like_MDH L-lactate 38.3 55 0.0012 25.7 4.1 48 13-62 63-120 (300)
445 cd02071 MM_CoA_mut_B12_BD meth 38.1 93 0.002 20.8 4.7 42 16-60 50-91 (122)
446 cd05294 LDH-like_MDH_nadp A la 37.9 67 0.0014 25.5 4.5 48 13-62 69-126 (309)
447 TIGR00126 deoC deoxyribose-pho 36.9 1.8E+02 0.0039 21.8 8.1 70 14-88 81-152 (211)
448 TIGR03436 acidobact_VWFA VWFA- 36.8 2E+02 0.0043 22.3 10.0 86 17-110 165-257 (296)
449 PF09827 CRISPR_Cas2: CRISPR a 36.7 45 0.00098 20.4 2.7 20 19-38 3-22 (78)
450 PRK13660 hypothetical protein; 36.7 77 0.0017 23.3 4.3 15 14-28 127-141 (182)
451 PF07034 ORC3_N: Origin recogn 36.3 53 0.0012 26.4 3.8 84 29-113 55-149 (330)
452 PF00205 TPP_enzyme_M: Thiamin 35.3 77 0.0017 21.5 4.0 38 49-90 11-48 (137)
453 cd01828 sialate_O-acetylestera 35.2 1.5E+02 0.0033 20.5 6.8 41 15-57 47-94 (169)
454 cd04169 RF3 RF3 subfamily. Pe 35.1 34 0.00074 26.5 2.4 26 82-108 240-265 (267)
455 cd01886 EF-G Elongation factor 34.5 36 0.00078 26.5 2.4 26 82-108 243-268 (270)
456 PRK04175 rpl7ae 50S ribosomal 33.9 49 0.0011 22.5 2.8 40 16-62 46-85 (122)
457 PRK12399 tagatose 1,6-diphosph 33.8 87 0.0019 25.3 4.4 41 16-56 118-161 (324)
458 cd02033 BchX Chlorophyllide re 33.7 2.6E+02 0.0055 22.6 11.2 86 17-113 173-278 (329)
459 PRK10474 putative PTS system f 33.3 36 0.00078 21.7 1.9 24 4-27 26-49 (88)
460 PF13401 AAA_22: AAA domain; P 32.9 91 0.002 20.5 4.0 45 12-59 81-125 (131)
461 PF13651 EcoRI_methylase: Aden 32.8 74 0.0016 25.7 3.9 53 12-80 131-183 (336)
462 PRK04161 tagatose 1,6-diphosph 32.4 95 0.0021 25.1 4.4 41 16-56 120-163 (329)
463 PRK13233 nifH nitrogenase redu 32.4 2.3E+02 0.005 21.7 7.9 44 16-60 143-187 (275)
464 PTZ00365 60S ribosomal protein 32.1 50 0.0011 25.8 2.7 79 15-113 147-225 (266)
465 TIGR01232 lacD tagatose 1,6-di 31.9 98 0.0021 25.0 4.5 41 16-56 119-162 (325)
466 PF00319 SRF-TF: SRF-type tran 31.9 44 0.00095 19.1 1.9 16 13-28 29-44 (51)
467 cd01840 SGNH_hydrolase_yrhL_li 31.7 1.7E+02 0.0037 20.0 6.4 39 16-59 50-88 (150)
468 TIGR02370 pyl_corrinoid methyl 31.6 2.1E+02 0.0046 21.0 6.1 61 18-90 135-195 (197)
469 PRK13555 azoreductase; Provisi 31.0 99 0.0022 23.1 4.2 34 12-45 85-118 (208)
470 PF00056 Ldh_1_N: lactate/mala 31.0 62 0.0013 22.4 3.0 49 12-62 65-123 (141)
471 TIGR03567 FMN_reduc_SsuE FMN r 30.9 57 0.0012 23.3 2.8 46 13-59 62-107 (171)
472 PF05049 IIGP: Interferon-indu 30.9 64 0.0014 26.6 3.4 90 12-109 110-219 (376)
473 cd08166 MPP_Cdc1_like_1 unchar 30.9 1.8E+02 0.0039 21.6 5.5 66 15-80 41-111 (195)
474 TIGR01753 flav_short flavodoxi 30.7 84 0.0018 21.0 3.6 45 13-58 42-88 (140)
475 cd00300 LDH_like L-lactate deh 30.3 55 0.0012 25.9 2.9 49 12-62 62-120 (300)
476 PRK10569 NAD(P)H-dependent FMN 30.2 66 0.0014 23.6 3.1 48 11-59 61-108 (191)
477 PRK05569 flavodoxin; Provision 30.0 84 0.0018 21.3 3.5 69 13-85 45-115 (141)
478 PF00462 Glutaredoxin: Glutare 30.0 84 0.0018 17.7 3.0 44 10-59 15-58 (60)
479 PF00735 Septin: Septin; Inte 29.7 1.6E+02 0.0034 23.1 5.3 66 16-87 113-181 (281)
480 PTZ00222 60S ribosomal protein 29.6 58 0.0013 25.3 2.8 79 15-113 147-225 (263)
481 PF14606 Lipase_GDSL_3: GDSL-l 29.5 98 0.0021 22.7 3.8 44 12-57 53-100 (178)
482 TIGR02016 BchX chlorophyllide 29.4 2.8E+02 0.0061 21.8 7.2 88 14-111 145-252 (296)
483 cd05565 PTS_IIB_lactose PTS_II 29.3 1.2E+02 0.0026 19.8 3.9 18 38-55 60-77 (99)
484 TIGR01425 SRP54_euk signal rec 29.2 2.7E+02 0.0058 23.5 6.8 42 15-63 211-252 (429)
485 cd00650 LDH_MDH_like NAD-depen 29.1 53 0.0011 25.2 2.6 49 12-62 66-124 (263)
486 COG1445 FrwB Phosphotransferas 29.0 51 0.0011 22.6 2.1 22 5-26 45-66 (122)
487 COG3684 LacD Tagatose-1,6-bisp 28.7 1.5E+02 0.0032 23.4 4.8 43 19-61 129-171 (306)
488 PF12724 Flavodoxin_5: Flavodo 28.5 1.6E+02 0.0034 20.2 4.7 47 13-61 40-86 (143)
489 cd05295 MDH_like Malate dehydr 28.4 1.2E+02 0.0027 25.7 4.7 50 12-62 195-255 (452)
490 cd01833 XynB_like SGNH_hydrola 28.0 2E+02 0.0043 19.6 5.3 41 15-57 39-86 (157)
491 KOG0464|consensus 27.6 15 0.00032 30.9 -0.8 57 2-63 109-167 (753)
492 PF10622 Ehbp: Energy-converti 27.5 1.6E+02 0.0034 18.2 4.3 50 53-106 22-74 (78)
493 PF06490 FleQ: Flagellar regul 27.3 1.9E+02 0.0041 19.0 4.9 25 36-62 57-81 (109)
494 COG1512 Beta-propeller domains 27.2 3.1E+02 0.0068 21.6 9.2 97 15-113 62-167 (271)
495 PF12327 FtsZ_C: FtsZ family, 27.1 1.8E+02 0.0038 18.7 5.0 51 9-61 28-78 (95)
496 PTZ00258 GTP-binding protein; 27.1 1.2E+02 0.0026 25.1 4.4 15 13-27 112-126 (390)
497 TIGR01459 HAD-SF-IIA-hyp4 HAD- 27.0 1.2E+02 0.0025 22.9 4.1 38 17-59 125-162 (242)
498 TIGR01771 L-LDH-NAD L-lactate 26.6 68 0.0015 25.4 2.8 49 12-62 60-118 (299)
499 cd05291 HicDH_like L-2-hydroxy 26.5 92 0.002 24.6 3.6 48 13-62 65-122 (306)
500 cd02040 NifH NifH gene encodes 26.5 2.9E+02 0.0062 20.9 8.2 44 16-60 141-185 (270)
No 1
>KOG0092|consensus
Probab=99.96 E-value=2.1e-29 Score=181.04 Aligned_cols=111 Identities=25% Similarity=0.318 Sum_probs=104.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ +.+.||++|+++|+|||+|+.+||..++.|+.++.+.. ++++.+.|||||+||.+.++|..+++..+|+.
T Consensus 61 TAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~-~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~ 139 (200)
T KOG0092|consen 61 TAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA-SPNIVIALVGNKADLLERREVEFEEAQAYAES 139 (200)
T ss_pred cCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC-CCCeEEEEecchhhhhhcccccHHHHHHHHHh
Confidence 9999994 99999999999999999999999999999999999988 48899999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG 114 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~ 114 (173)
.|..|||+|||+|. ||+++|..|++.++......
T Consensus 140 ~gll~~ETSAKTg~-Nv~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 140 QGLLFFETSAKTGE-NVNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred cCCEEEEEeccccc-CHHHHHHHHHHhccCccccc
Confidence 99999999999999 99999999999998855443
No 2
>KOG0084|consensus
Probab=99.96 E-value=2.2e-29 Score=181.58 Aligned_cols=110 Identities=28% Similarity=0.330 Sum_probs=104.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ ++.+||++||+||+|||+|+.+||+.+..|+.++.++. ..++|++|||||+|+.+.+.|+.++++.|+..
T Consensus 65 TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~ 143 (205)
T KOG0084|consen 65 TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADE 143 (205)
T ss_pred ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHh
Confidence 8999995 99999999999999999999999999999999999998 57799999999999999999999999999999
Q ss_pred cCCe-EEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 80 YNCT-FHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 80 ~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
+++. |+|+|||++. ||++.|..|+..+.+....
T Consensus 144 ~~~~~f~ETSAK~~~-NVe~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 144 LGIPIFLETSAKDST-NVEDAFLTLAKELKQRKGL 177 (205)
T ss_pred cCCcceeecccCCcc-CHHHHHHHHHHHHHHhccc
Confidence 9999 9999999999 9999999999998875443
No 3
>KOG0078|consensus
Probab=99.96 E-value=4.3e-29 Score=182.17 Aligned_cols=106 Identities=31% Similarity=0.395 Sum_probs=102.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ ++.+||++|+++++|||+++..||+++..|+..|.++. +.++|++|||||+|+...|+|+.+.++.+|.+
T Consensus 68 taGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e 146 (207)
T KOG0078|consen 68 TAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALARE 146 (207)
T ss_pred cccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHH
Confidence 8999996 99999999999999999999999999999999999998 46899999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+|+.|+|+|||+|. ||+++|..|++.+..
T Consensus 147 ~G~~F~EtSAk~~~-NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 147 YGIKFFETSAKTNF-NIEEAFLSLARDILQ 175 (207)
T ss_pred hCCeEEEccccCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999999986
No 4
>KOG0094|consensus
Probab=99.95 E-value=4.2e-28 Score=174.64 Aligned_cols=110 Identities=26% Similarity=0.375 Sum_probs=104.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ +.++||+++.++|+|||++|..||++...|++.+....+..++.++|||||.||.+.++++.+++...|++
T Consensus 78 TAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke 157 (221)
T KOG0094|consen 78 TAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE 157 (221)
T ss_pred cccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHH
Confidence 9999995 99999999999999999999999999999999999988766799999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
++..|+++||+.|. ||.++|..|+..+.+...
T Consensus 158 l~a~f~etsak~g~-NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 158 LNAEFIETSAKAGE-NVKQLFRRIAAALPGMEV 189 (221)
T ss_pred hCcEEEEecccCCC-CHHHHHHHHHHhccCccc
Confidence 99999999999999 999999999988887544
No 5
>KOG0080|consensus
Probab=99.95 E-value=6.8e-28 Score=168.67 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=108.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ ++++||++|.++|+|||+|.+++|..+..|+.++.-+...+++..++||||+|..++|.|+.+++..||++
T Consensus 67 TAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~ 146 (209)
T KOG0080|consen 67 TAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK 146 (209)
T ss_pred ccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh
Confidence 9999996 99999999999999999999999999999999999999778999999999999988899999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH 116 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~ 116 (173)
+++-|+|+|||+.+ ||+..|+.|+..|++.+....+
T Consensus 147 h~~LFiE~SAkt~~-~V~~~FeelveKIi~tp~l~~~ 182 (209)
T KOG0080|consen 147 HRCLFIECSAKTRE-NVQCCFEELVEKIIETPSLWEE 182 (209)
T ss_pred hCcEEEEcchhhhc-cHHHHHHHHHHHHhcCcchhhc
Confidence 99999999999999 9999999999999998876544
No 6
>KOG0093|consensus
Probab=99.95 E-value=1.1e-27 Score=165.43 Aligned_cols=107 Identities=26% Similarity=0.355 Sum_probs=102.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||+. ++..||++|+++|+|||+++.+||..++.|.-.|..++ ..++|+||||||||+.++|.++.+.+..++.+
T Consensus 77 TagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~ 155 (193)
T KOG0093|consen 77 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQ 155 (193)
T ss_pred cccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHH
Confidence 8999995 99999999999999999999999999999999999887 57899999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+|++|||+|||.+. ||+++|+.++..|.+.
T Consensus 156 LGfefFEtSaK~Ni-nVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 156 LGFEFFETSAKENI-NVKQVFERLVDIICDK 185 (193)
T ss_pred hChHHhhhcccccc-cHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999988763
No 7
>KOG0098|consensus
Probab=99.94 E-value=2.4e-27 Score=169.60 Aligned_cols=109 Identities=28% Similarity=0.346 Sum_probs=103.1
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||. +++.+||++|-++|||||++..+||.++..|+.+++++. .+++.++|+|||+||...|+|+.+|++.||++
T Consensus 62 taGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e 140 (216)
T KOG0098|consen 62 TAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFARE 140 (216)
T ss_pred cCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHH
Confidence 899998 499999999999999999999999999999999999986 58999999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
+|+.|+|+||+++. ||+++|...+..|+....
T Consensus 141 hgLifmETSakt~~-~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 141 HGLIFMETSAKTAE-NVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred cCceeehhhhhhhh-hHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998886443
No 8
>KOG0088|consensus
Probab=99.94 E-value=3.2e-27 Score=165.00 Aligned_cols=110 Identities=24% Similarity=0.320 Sum_probs=103.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ +-+.||+++|++|+|||+||.+||+.++.|+.+++... ...+-++|||||+||.+++.|+.+++..+++.
T Consensus 69 TAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes 147 (218)
T KOG0088|consen 69 TAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAES 147 (218)
T ss_pred ccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHh
Confidence 8999996 99999999999999999999999999999999999877 47789999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.|..|+++||+++. ||.++|+.|...+++....
T Consensus 148 vGA~y~eTSAk~N~-Gi~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 148 VGALYMETSAKDNV-GISELFESLTAKMIEHSSQ 180 (218)
T ss_pred hchhheeccccccc-CHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 9999999999998885533
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=1.1e-25 Score=167.87 Aligned_cols=107 Identities=26% Similarity=0.339 Sum_probs=97.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||++++ ++..||++||++|+|||+++++||+.+..|+..+.... ..++|++|||||+||...+++..+++..+++.
T Consensus 56 taGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~ 134 (202)
T cd04120 56 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQ 134 (202)
T ss_pred CCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 8999984 88999999999999999999999999999999887764 46799999999999988888999999999987
Q ss_pred c-CCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 Y-NCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
. ++.|++|||++|. ||+++|.+|+..+...
T Consensus 135 ~~~~~~~etSAktg~-gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 135 ITGMRFCEASAKDNF-NVDEIFLKLVDDILKK 165 (202)
T ss_pred cCCCEEEEecCCCCC-CHHHHHHHHHHHHHHh
Confidence 5 7889999999999 9999999999988764
No 10
>KOG0087|consensus
Probab=99.94 E-value=1e-26 Score=169.38 Aligned_cols=107 Identities=32% Similarity=0.414 Sum_probs=102.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ ++.+||++|.++++|||++...+|+++..|+.+++.+. .++++++|||||+||.+.+.|..+++..+++.
T Consensus 70 TAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~ 148 (222)
T KOG0087|consen 70 TAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK 148 (222)
T ss_pred ccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHh
Confidence 9999996 99999999999999999999999999999999999998 57999999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.+..|+|+||.++. ||+.+|..++..|+..
T Consensus 149 ~~l~f~EtSAl~~t-NVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 149 EGLFFLETSALDAT-NVEKAFERVLTEIYKI 178 (222)
T ss_pred cCceEEEecccccc-cHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999888763
No 11
>KOG0091|consensus
Probab=99.94 E-value=4.6e-26 Score=159.93 Aligned_cols=109 Identities=23% Similarity=0.276 Sum_probs=101.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|||||++ ++.+||+++-++++|||+++.+||++++.|+.+...+.. +..+.+.|||.|+||...|+|+.++++.++.
T Consensus 65 tagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa 144 (213)
T KOG0091|consen 65 TAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA 144 (213)
T ss_pred ccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH
Confidence 9999994 999999999999999999999999999999999887765 4566789999999999999999999999999
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.+|+.|+|+||++|. ||++.|+.|++.+....
T Consensus 145 ~hgM~FVETSak~g~-NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 145 SHGMAFVETSAKNGC-NVEEAFDMLAQEIFQAI 176 (213)
T ss_pred hcCceEEEecccCCC-cHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999887643
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=8.9e-26 Score=166.79 Aligned_cols=105 Identities=29% Similarity=0.324 Sum_probs=98.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||++++ +++.|++++|++|+|||++++.||+++..|+.++..+. +++|+||||||+||.+.+.++.++++.+++.
T Consensus 62 t~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~ 139 (189)
T cd04121 62 TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER 139 (189)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH
Confidence 8999884 88999999999999999999999999999999998765 6899999999999988888999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.||||||++|. ||+++|++|++.+..
T Consensus 140 ~~~~~~e~SAk~g~-~V~~~F~~l~~~i~~ 168 (189)
T cd04121 140 NGMTFFEVSPLCNF-NITESFTELARIVLM 168 (189)
T ss_pred cCCEEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 13
>KOG0079|consensus
Probab=99.93 E-value=1.8e-26 Score=159.59 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=101.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ ++..||++.+++++|||+|+.+||.++..|+++++..+ +.+|-||||||+|+++.+.|..+++..||..
T Consensus 64 tAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~ 141 (198)
T KOG0079|consen 64 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQ 141 (198)
T ss_pred cccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHh
Confidence 8999995 99999999999999999999999999999999999998 6899999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.|+++||+|||++. |++.+|+.|.++++...
T Consensus 142 mgie~FETSaKe~~-NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 142 MGIELFETSAKENE-NVEAMFHCITKQVLQAK 172 (198)
T ss_pred cCchheehhhhhcc-cchHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999887633
No 14
>KOG0394|consensus
Probab=99.93 E-value=1.1e-25 Score=160.72 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=100.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCC--CccCCHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEH--LRQVDESLGR 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~--~~~v~~~~~~ 74 (173)
|||||++ +.-.||++||++++|||+++++||+.+..|.+++..+.. +...|+||+|||+|+.. .++|+...++
T Consensus 65 TAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq 144 (210)
T KOG0394|consen 65 TAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQ 144 (210)
T ss_pred cccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHH
Confidence 9999995 889999999999999999999999999999999988764 34689999999999975 3899999999
Q ss_pred HHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 75 STAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 75 ~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.||...| ++|||+|||++. ||+++|..++..++.....
T Consensus 145 ~WC~s~gnipyfEtSAK~~~-NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 145 TWCKSKGNIPYFETSAKEAT-NVDEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHhcCCceeEEecccccc-cHHHHHHHHHHHHHhccch
Confidence 9999876 899999999999 9999999999999886543
No 15
>KOG0083|consensus
Probab=99.93 E-value=5e-26 Score=155.01 Aligned_cols=108 Identities=29% Similarity=0.322 Sum_probs=101.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ .+..||++||+.+++||+++..||+++..|+.+|.++. ...+.++++|||||+..++.|..++++.+++.
T Consensus 54 tagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~ 132 (192)
T KOG0083|consen 54 TAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEA 132 (192)
T ss_pred ccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHH
Confidence 8999994 99999999999999999999999999999999999987 46788999999999988899999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
++++|.|+|||+|. ||+..|-.|++.+.+..
T Consensus 133 y~ipfmetsaktg~-nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 133 YGIPFMETSAKTGF-NVDLAFLAIAEELKKLK 163 (192)
T ss_pred HCCCceeccccccc-cHhHHHHHHHHHHHHhc
Confidence 99999999999999 99999999999887743
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.92 E-value=1e-24 Score=159.42 Aligned_cols=105 Identities=21% Similarity=0.299 Sum_probs=94.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc----------cC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLR----------QV 68 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~----------~v 68 (173)
|+|++++ ++..||++||++|+|||+++++||+.+ ..|+.++.... +++|++|||||+||.+.+ .+
T Consensus 56 t~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v 133 (176)
T cd04133 56 TAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPI 133 (176)
T ss_pred CCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCC
Confidence 8999984 889999999999999999999999998 68999998765 579999999999996543 48
Q ss_pred CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+.+++..++...++ .|+||||++|. ||+++|..+++.+.+
T Consensus 134 ~~~~~~~~a~~~~~~~~~E~SAk~~~-nV~~~F~~~~~~~~~ 174 (176)
T cd04133 134 TTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCccc-CHHHHHHHHHHHHhc
Confidence 89999999999997 59999999999 999999999987654
No 17
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=8.8e-25 Score=162.24 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=93.1
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC----------------
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH---------------- 64 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~---------------- 64 (173)
|||+++.++..||++||++|+|||+++++||+++. .|+.++.... +++|++|||||+||.+
T Consensus 73 TaG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 73 TFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred CCCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccc
Confidence 89998878888999999999999999999999997 5999988765 5799999999999964
Q ss_pred ---CccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 65 ---LRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 65 ---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.+.|+.+++..+++++++.|+||||++|. ||+++|+.+++.
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~-~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQF-GVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCC-CHHHHHHHHHHh
Confidence 47889999999999999999999999999 999999999863
No 18
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.92 E-value=2.1e-24 Score=158.62 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=93.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~ 66 (173)
|||++++ +++.||++||++|+|||+++++||+.+ ..|+.++.+.. +++|++|||||+||.+ .+
T Consensus 60 taG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~ 137 (182)
T cd04172 60 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQT 137 (182)
T ss_pred CCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCC
Confidence 8999884 889999999999999999999999998 78999998876 6799999999999964 34
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHh
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESR 108 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~ 108 (173)
.|+.+++..+|+.+++ .|+||||++|. | |+++|..++..++
T Consensus 138 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~-n~v~~~F~~~~~~~~ 180 (182)
T cd04172 138 PVSYDQGANMAKQIGAATYIECSALQSE-NSVRDIFHVATLACV 180 (182)
T ss_pred CCCHHHHHHHHHHcCCCEEEECCcCCCC-CCHHHHHHHHHHHHh
Confidence 6899999999999995 89999999999 9 9999999988544
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=7.7e-24 Score=160.79 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=94.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~ 66 (173)
|||++++ +++.||++||++|+|||+++++||+.+ ..|+.++.... +++|+||||||+||.+ .+
T Consensus 68 TaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~ 145 (232)
T cd04174 68 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQA 145 (232)
T ss_pred CCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCC
Confidence 8999884 889999999999999999999999985 78999998865 5789999999999964 36
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.|+.+++..+|+.+++ .||||||++|..||+++|..++..+.+
T Consensus 146 ~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 146 PISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 7899999999999998 699999999952699999999998876
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.91 E-value=6.9e-24 Score=156.87 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=93.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|||++++ +++.||++||++|+|||+++++||+.+. .|+.++.... +++|++|||||+||.+. +
T Consensus 58 t~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 135 (191)
T cd01875 58 TAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQA 135 (191)
T ss_pred CCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence 8999984 8899999999999999999999999996 5998887754 57999999999999654 2
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++..++..++ +.|+||||++|. ||+++|.+|++.+..
T Consensus 136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g~-~v~e~f~~l~~~~~~ 178 (191)
T cd01875 136 PITPQQGGALAKQIHAVKYLECSALNQD-GVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCCCC-CHHHHHHHHHHHHhc
Confidence 467888999999988 689999999999 999999999998876
No 21
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=7.1e-24 Score=154.99 Aligned_cols=108 Identities=27% Similarity=0.380 Sum_probs=97.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||++++ ++..||++||++|+|||+++++||+.+..|+..+.... ..++|++|||||+||.+.+.+..+++..++..
T Consensus 36 t~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~ 114 (176)
T PTZ00099 36 TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQE 114 (176)
T ss_pred CCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence 8999884 88899999999999999999999999999999988764 35789999999999987777888899999988
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+++.|++|||++|. ||+++|++|++.+.+.+
T Consensus 115 ~~~~~~e~SAk~g~-nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 115 YNTMFHETSAKAGH-NIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cCCEEEEEECCCCC-CHHHHHHHHHHHHHhcc
Confidence 89999999999999 99999999999987633
No 22
>KOG0086|consensus
Probab=99.91 E-value=2.1e-24 Score=150.13 Aligned_cols=108 Identities=22% Similarity=0.214 Sum_probs=101.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ .+++||++|-++++|||+++.+||+.+..|+..++... ++++.+||+|||.||...++|+..++..||.+
T Consensus 65 TAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEAs~FaqE 143 (214)
T KOG0086|consen 65 TAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE 143 (214)
T ss_pred cccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHHHhhhcc
Confidence 8999995 99999999999999999999999999999999999877 68899999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+.+.+.|+||++|+ ||++.|-..+..|+...
T Consensus 144 nel~flETSa~TGe-NVEEaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 144 NELMFLETSALTGE-NVEEAFLKCARTILNKI 174 (214)
T ss_pred cceeeeeecccccc-cHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999998887543
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.91 E-value=9.2e-24 Score=153.73 Aligned_cols=107 Identities=36% Similarity=0.514 Sum_probs=97.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.||+.+..|+..+.+.....++|++|||||+|+.+.+.++.+++..+++.
T Consensus 57 t~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~ 136 (172)
T cd04141 57 TAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE 136 (172)
T ss_pred CCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH
Confidence 7899874 88999999999999999999999999999988887754346799999999999987788999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.|++|||++|. ||+++|++|+..+..
T Consensus 137 ~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~ 165 (172)
T cd04141 137 FNCPFFETSAALRH-YIDDAFHGLVREIRR 165 (172)
T ss_pred hCCEEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999988875
No 24
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=7.9e-24 Score=155.00 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=93.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~ 66 (173)
|||++++ +++.||++||++|+|||+++++||+++ ..|+.++.+.. +++|++|||||+||.+ .+
T Consensus 56 t~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~ 133 (178)
T cd04131 56 TSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQA 133 (178)
T ss_pred CCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCC
Confidence 8999874 889999999999999999999999996 78999998876 6899999999999964 24
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHh
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESR 108 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~ 108 (173)
.|+.+++.++++.+++ .|+||||++|. | |+++|..+++..+
T Consensus 134 ~v~~~e~~~~a~~~~~~~~~E~SA~~~~-~~v~~~F~~~~~~~~ 176 (178)
T cd04131 134 PVSYEQGCAIAKQLGAEIYLECSAFTSE-KSVRDIFHVATMACL 176 (178)
T ss_pred CCCHHHHHHHHHHhCCCEEEECccCcCC-cCHHHHHHHHHHHHh
Confidence 6889999999999996 79999999998 7 9999999998544
No 25
>KOG0081|consensus
Probab=99.90 E-value=5.4e-24 Score=148.99 Aligned_cols=109 Identities=28% Similarity=0.311 Sum_probs=101.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ ++..||++|-+++++||+++.+||-++..|+..++.+.--.+.-||++|||+||++.++|+.+++..+|.+
T Consensus 74 TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k 153 (219)
T KOG0081|consen 74 TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK 153 (219)
T ss_pred cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence 8999994 99999999999999999999999999999999998765446777999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+|++|||+||-+|. ||++..+.|+..+.+..
T Consensus 154 yglPYfETSA~tg~-Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 154 YGLPYFETSACTGT-NVEKAVELLLDLVMKRI 184 (219)
T ss_pred hCCCeeeeccccCc-CHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999887743
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.90 E-value=8.6e-23 Score=147.30 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=96.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||+++++||+.+..|+..+.... .+++|+++||||+|+.+.+.++.+++..++..
T Consensus 58 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~ 136 (166)
T cd04122 58 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFADE 136 (166)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHHH
Confidence 7899883 78899999999999999999999999999999887764 36789999999999988888888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.|++|||++|. ||+++|.+++..+.+
T Consensus 137 ~~~~~~e~Sa~~~~-~i~e~f~~l~~~~~~ 165 (166)
T cd04122 137 NGLLFLECSAKTGE-NVEDAFLETAKKIYQ 165 (166)
T ss_pred cCCEEEEEECCCCC-CHHHHHHHHHHHHhh
Confidence 99999999999999 999999999988754
No 27
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.90 E-value=1.1e-22 Score=153.56 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=95.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC---------------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH--------------- 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~--------------- 64 (173)
|||++++ ++..||+++|++|+|||+++++||+.+..|+..+.+.. ..++|+||||||+||.+
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~ 129 (220)
T cd04126 51 TAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRV 129 (220)
T ss_pred CCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccc
Confidence 8999884 88999999999999999999999999998887777654 36799999999999975
Q ss_pred ----CccCCHHHHHHHhhhcC--------------CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 65 ----LRQVDESLGRSTAVKYN--------------CTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 65 ----~~~v~~~~~~~~~~~~~--------------~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.+.|+.+++..++++.+ +.|+||||++|. ||+++|..+++.+....
T Consensus 130 ~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~-~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 130 SPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY-NVDELFEYLFNLVLPLI 193 (220)
T ss_pred cccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCC-CHHHHHHHHHHHHHHHH
Confidence 67889999999998876 679999999999 99999999999887633
No 28
>KOG0395|consensus
Probab=99.89 E-value=1.1e-22 Score=150.72 Aligned_cols=107 Identities=35% Similarity=0.489 Sum_probs=100.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ +...|++++|++++||+++|+.||+.+..+++.|.+......+|+++||||+||...++|+.+++..++..
T Consensus 58 t~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~ 137 (196)
T KOG0395|consen 58 TAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARS 137 (196)
T ss_pred CCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHh
Confidence 8998874 89999999999999999999999999999999997766567799999999999998899999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.|+|+||+.+. +|+++|..|++.+..
T Consensus 138 ~~~~f~E~Sak~~~-~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 138 WGCAFIETSAKLNY-NVDEVFYELVREIRL 166 (196)
T ss_pred cCCcEEEeeccCCc-CHHHHHHHHHHHHHh
Confidence 99999999999998 999999999998765
No 29
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.89 E-value=1.1e-22 Score=151.50 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=92.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||++++ ++..||+++|++|+|||+++..||+.+..|+.++.+.. .++|++|||||+|+.. +.+..+. ..++..
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~ 126 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRK 126 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHH
Confidence 8999884 88999999999999999999999999999999999876 6899999999999864 4555544 467788
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.++.|++|||++|. ||+++|.+|+..+.+.
T Consensus 127 ~~~~~~e~SAk~~~-~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 127 KNLQYYDISAKSNY-NFEKPFLWLARKLIGD 156 (200)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHhc
Confidence 88999999999999 9999999999988764
No 30
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=2.1e-22 Score=149.90 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=96.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|+|+++. +++.||+++|++|+|||+++++||+.+..|+.++..... ..++|+||||||+|+.+.+.+..+++..+
T Consensus 57 t~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 136 (201)
T cd04107 57 IAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQF 136 (201)
T ss_pred CCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence 8999874 889999999999999999999999999999998875421 25789999999999976677888999999
Q ss_pred hhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 77 ~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+...+ ..|+++||++|. ||+++|++|++.+....
T Consensus 137 ~~~~~~~~~~e~Sak~~~-~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 137 CKENGFIGWFETSAKEGI-NIEEAMRFLVKNILAND 171 (201)
T ss_pred HHHcCCceEEEEeCCCCC-CHHHHHHHHHHHHHHhc
Confidence 99988 689999999999 99999999999988743
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=8.8e-23 Score=148.90 Aligned_cols=107 Identities=30% Similarity=0.366 Sum_probs=97.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||+++++||.++..|+..+.......++|+++||||+|+.+.+.++.+++..++..
T Consensus 70 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~ 149 (180)
T cd04127 70 TAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK 149 (180)
T ss_pred CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence 7898873 88999999999999999999999999999999998765346789999999999987788888889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++++++||++|. |++++|++|++.+.+
T Consensus 150 ~~~~~~e~Sak~~~-~v~~l~~~l~~~~~~ 178 (180)
T cd04127 150 YGIPYFETSAATGT-NVEKAVERLLDLVMK 178 (180)
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999988765
No 32
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.89 E-value=1.6e-22 Score=147.57 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=91.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|++++ ++..||+++|++|+|||+++++||+.+. .|+.++.... +++|+||||||+|+.+. +
T Consensus 56 t~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~ 133 (175)
T cd01874 56 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQK 133 (175)
T ss_pred CCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCC
Confidence 8999884 8888999999999999999999999996 5999888765 57999999999998643 5
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.+++..+++..+ +.|+||||++|. ||+++|+.++...
T Consensus 134 ~v~~~~~~~~a~~~~~~~~~e~SA~tg~-~v~~~f~~~~~~~ 174 (175)
T cd01874 134 PITPETGEKLARDLKAVKYVECSALTQK-GLKNVFDEAILAA 174 (175)
T ss_pred CcCHHHHHHHHHHhCCcEEEEecCCCCC-CHHHHHHHHHHHh
Confidence 678888999998887 689999999999 9999999998754
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.89 E-value=2.3e-22 Score=144.65 Aligned_cols=103 Identities=26% Similarity=0.361 Sum_probs=94.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++++|||+++++||+.+..|+.++.... ..++|+++||||+|+.+.+.+..+++..+++.
T Consensus 56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~ 134 (161)
T cd04117 56 TAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKE 134 (161)
T ss_pred CCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999988765 35799999999999988888888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+++.|++|||++|. ||+++|.+|++.
T Consensus 135 ~~~~~~e~Sa~~~~-~v~~~f~~l~~~ 160 (161)
T cd04117 135 YGMDFFETSACTNS-NIKESFTRLTEL 160 (161)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHhh
Confidence 99999999999999 999999999864
No 34
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=2.1e-22 Score=144.79 Aligned_cols=101 Identities=19% Similarity=0.424 Sum_probs=89.0
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC--CCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--HLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ ..|++++|++++|||+++++||+.+..|+.++.......++|++|||||+|+. ..+.++.+++..+++.
T Consensus 54 ~~g~~~---~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~ 130 (158)
T cd04103 54 EGGAPD---AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD 130 (158)
T ss_pred CCCCCc---hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH
Confidence 788874 46889999999999999999999999999999887644679999999999985 3578888899999987
Q ss_pred c-CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 Y-NCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
. ++.|+||||++|. ||+++|..+++.
T Consensus 131 ~~~~~~~e~SAk~~~-~i~~~f~~~~~~ 157 (158)
T cd04103 131 MKRCSYYETCATYGL-NVERVFQEAAQK 157 (158)
T ss_pred hCCCcEEEEecCCCC-CHHHHHHHHHhh
Confidence 6 4899999999999 999999999864
No 35
>KOG0095|consensus
Probab=99.89 E-value=3.9e-23 Score=143.33 Aligned_cols=106 Identities=24% Similarity=0.281 Sum_probs=99.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ ++.+||+.|+++|+|||++-..||+-+..|+.+|.++. ...+-.|+||||+|+.+.++|+...+++|++.
T Consensus 63 tagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~ 141 (213)
T KOG0095|consen 63 TAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEA 141 (213)
T ss_pred ccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHh
Confidence 8999995 99999999999999999999999999999999999998 46788899999999999999999999999998
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...-|+|+||++.+ ||+.+|..++..+..
T Consensus 142 qdmyfletsakea~-nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 142 QDMYFLETSAKEAD-NVEKLFLDLACRLIS 170 (213)
T ss_pred hhhhhhhhcccchh-hHHHHHHHHHHHHHH
Confidence 88889999999999 999999999987775
No 36
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.89 E-value=4e-22 Score=147.10 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=91.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR------------ 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------ 66 (173)
|+|+++. ++..||+++|++|+|||+++++||+.+. .|+..+.... +++|++|||||+||.+.+
T Consensus 55 t~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~ 132 (189)
T cd04134 55 TAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKH 132 (189)
T ss_pred CCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCC
Confidence 7999884 8889999999999999999999999986 5999988765 579999999999997543
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+..+++..++...+ +.|++|||++|. ||+++|.+|++.+..
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~-~v~e~f~~l~~~~~~ 175 (189)
T cd04134 133 TISYEEGLAVAKRINALRYLECSAKLNR-GVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHcCCCEEEEccCCcCC-CHHHHHHHHHHHHhc
Confidence 356677888888777 789999999999 999999999998875
No 37
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=7.8e-22 Score=148.11 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=97.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||+++++||+++..|+.++........+|++|||||+|+...+.+..+++..+++.
T Consensus 59 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~ 138 (211)
T cd04111 59 TAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD 138 (211)
T ss_pred CCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH
Confidence 7898874 78899999999999999999999999999999998765445688999999999987788888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+++.|+++||++|. ||+++|++|++.+.+.
T Consensus 139 ~~~~~~e~Sak~g~-~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 139 LGMKYIETSARTGD-NVEEAFELLTQEIYER 168 (211)
T ss_pred hCCEEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999988764
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=4e-22 Score=142.81 Aligned_cols=105 Identities=28% Similarity=0.429 Sum_probs=94.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ ++..|++++|++++|||++++++|+.+..|+..+.......++|+++||||+|+.+.+.+..+++..++..
T Consensus 56 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (163)
T cd04136 56 TAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQ 135 (163)
T ss_pred CCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHH
Confidence 8999884 88999999999999999999999999999999998765446799999999999977677777788888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
++.+++++||++|. ||+++|.+|++.+
T Consensus 136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~~ 162 (163)
T cd04136 136 WGCPFYETSAKSKI-NVDEVFADLVRQI 162 (163)
T ss_pred cCCeEEEecCCCCC-CHHHHHHHHHHhc
Confidence 88899999999999 9999999998764
No 39
>KOG0097|consensus
Probab=99.88 E-value=2.1e-22 Score=138.71 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=102.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||++ .+++||++|-+.+.|||++...+++++..|+...+... .++..++++|||.||...+.|+.+++..|+++
T Consensus 67 tagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~faee 145 (215)
T KOG0097|consen 67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEE 145 (215)
T ss_pred cccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhh
Confidence 8999995 99999999999999999999999999999999988876 47888999999999999999999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
+|+.|+|+|||+|. ||++.|-..+..|+++..
T Consensus 146 ngl~fle~saktg~-nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 146 NGLMFLEASAKTGQ-NVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred cCeEEEEecccccC-cHHHHHHHHHHHHHHhhh
Confidence 99999999999999 999999999999987544
No 40
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=4.1e-22 Score=147.12 Aligned_cols=107 Identities=29% Similarity=0.416 Sum_probs=96.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|+++. ++..||+++|++|+|||+++.+||+.+..|+..+..... ..++|++|||||+|+.+.+.+...++..++
T Consensus 54 t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~ 133 (190)
T cd04144 54 TAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA 133 (190)
T ss_pred CCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH
Confidence 7999884 888999999999999999999999999999998876542 257899999999999877888888888888
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..+++.|+++||++|. ||+++|.++++.+.+
T Consensus 134 ~~~~~~~~e~SAk~~~-~v~~l~~~l~~~l~~ 164 (190)
T cd04144 134 RRLGCEFIEASAKTNV-NVERAFYTLVRALRQ 164 (190)
T ss_pred HHhCCEEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence 8889999999999999 999999999988765
No 41
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.88 E-value=5.5e-22 Score=142.66 Aligned_cols=105 Identities=25% Similarity=0.416 Sum_probs=94.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||+++..+|+.+..|+..+.......++|++|||||+|+.+.+.+..+++..+++.
T Consensus 56 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (164)
T cd04175 56 TAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 135 (164)
T ss_pred CCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH
Confidence 8999874 89999999999999999999999999999999988765457899999999999987777777788888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
++++|+++||++|. ||+++|.+|++.+
T Consensus 136 ~~~~~~~~Sa~~~~-~v~~~~~~l~~~l 162 (164)
T cd04175 136 WGCAFLETSAKAKI-NVNEIFYDLVRQI 162 (164)
T ss_pred hCCEEEEeeCCCCC-CHHHHHHHHHHHh
Confidence 88999999999999 9999999999765
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=99.88 E-value=5.3e-22 Score=146.40 Aligned_cols=108 Identities=29% Similarity=0.391 Sum_probs=97.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.+.....++|+++||||+|+.+.+.+..+++..++..
T Consensus 60 t~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~ 139 (189)
T PTZ00369 60 TAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS 139 (189)
T ss_pred CCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 8999984 88899999999999999999999999999999988765446899999999999987777888888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
++++|++|||++|. ||+++|.+|++.+...
T Consensus 140 ~~~~~~e~Sak~~~-gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 140 FGIPFLETSAKQRV-NVDEAFYELVREIRKY 169 (189)
T ss_pred hCCEEEEeeCCCCC-CHHHHHHHHHHHHHHH
Confidence 88999999999999 9999999999988763
No 43
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.88 E-value=1e-21 Score=148.32 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=92.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|++++ +++.||+++|++|+|||+++++||+.+ ..|..++.... +++|+||||||+||... .
T Consensus 56 t~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~ 133 (222)
T cd04173 56 TSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLI 133 (222)
T ss_pred CCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhhhccCC
Confidence 8999874 889999999999999999999999999 56888777655 68999999999999642 1
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHhcC
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESRGG 110 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~~~ 110 (173)
.++.+++..+++..++ .|+||||+++. + |+++|..++...+..
T Consensus 134 pIs~e~g~~~ak~~~~~~y~E~SAk~~~-~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 134 PVTHEQGTVLAKQVGAVSYVECSSRSSE-RSVRDVFHVATVASLGR 178 (222)
T ss_pred ccCHHHHHHHHHHcCCCEEEEcCCCcCC-cCHHHHHHHHHHHHHhc
Confidence 3778899999999995 89999999988 6 999999999877653
No 44
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=4.9e-22 Score=144.90 Aligned_cols=102 Identities=22% Similarity=0.306 Sum_probs=90.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. +++.|++++|++|+|||+++++||+.+. .|+..+.... +++|++|||||+||.+. +
T Consensus 56 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 133 (174)
T cd01871 56 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 133 (174)
T ss_pred CCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCC
Confidence 8999884 8889999999999999999999999996 6988887754 57999999999999642 3
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++.+++..++++++ +.|+||||++|. ||+++|+.+++.
T Consensus 134 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~l~~~ 173 (174)
T cd01871 134 PITYPQGLAMAKEIGAVKYLECSALTQK-GLKTVFDEAIRA 173 (174)
T ss_pred CCCHHHHHHHHHHcCCcEEEEecccccC-CHHHHHHHHHHh
Confidence 578899999999988 489999999999 999999999864
No 45
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=7.3e-22 Score=148.56 Aligned_cols=108 Identities=24% Similarity=0.247 Sum_probs=97.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|++.+ +...|+++||++|+|||+++++||+++..|+..+.+... ..++|+++||||+|+.+.+.+..+++..++
T Consensus 57 t~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~ 136 (215)
T cd04109 57 IGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA 136 (215)
T ss_pred CCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH
Confidence 7898773 888999999999999999999999999999999987652 245789999999999877888888999999
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
..+++.++++||++|. ||+++|++|+..+...
T Consensus 137 ~~~~~~~~~iSAktg~-gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 137 QANGMESCLVSAKTGD-RVNLLFQQLAAELLGV 168 (215)
T ss_pred HHcCCEEEEEECCCCC-CHHHHHHHHHHHHHhc
Confidence 9999999999999999 9999999999988764
No 46
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=1.2e-21 Score=140.71 Aligned_cols=105 Identities=28% Similarity=0.490 Sum_probs=93.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ ++..|++++|++|+|||+++++||+++..|+..+.+.....++|+++||||+|+...+.+...++..++..
T Consensus 56 t~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (163)
T cd04176 56 TAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE 135 (163)
T ss_pred CCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH
Confidence 8999884 89999999999999999999999999999999988765346899999999999976677777778888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||++|. |++++|.++++.+
T Consensus 136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~l 162 (163)
T cd04176 136 WGCPFMETSAKSKT-MVNELFAEIVRQM 162 (163)
T ss_pred hCCEEEEecCCCCC-CHHHHHHHHHHhc
Confidence 88899999999999 9999999998754
No 47
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=2.1e-21 Score=144.39 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=98.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++.. ++..|++++|++|+|||+++++||+.+..|+..+.... ..+|++|||||+|+.+...+..+++..++..
T Consensus 62 ~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~ 139 (199)
T cd04110 62 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ 139 (199)
T ss_pred CCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 8899874 88999999999999999999999999999999988765 6799999999999987777788888889888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG 114 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~ 114 (173)
.++.||++||++|. ||+++|++|+..+.......
T Consensus 140 ~~~~~~e~Sa~~~~-gi~~lf~~l~~~~~~~~~~~ 173 (199)
T cd04110 140 MGISLFETSAKENI-NVEEMFNCITELVLRAKKDN 173 (199)
T ss_pred cCCEEEEEECCCCc-CHHHHHHHHHHHHHHhhhcc
Confidence 89999999999999 99999999999988754433
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.87 E-value=1.6e-21 Score=140.63 Aligned_cols=106 Identities=28% Similarity=0.350 Sum_probs=95.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++++|||++++++|+.+..|+..+.... ..++|+++||||+|+.+.+.+..+++..++..
T Consensus 57 t~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (165)
T cd01865 57 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQ 135 (165)
T ss_pred CCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence 7898873 88899999999999999999999999999999987765 35789999999999987777778888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. ||+++|++|+..+.+
T Consensus 136 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~ 164 (165)
T cd01865 136 LGFEFFEASAKENI-NVKQVFERLVDIICD 164 (165)
T ss_pred cCCEEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence 89999999999999 999999999987654
No 49
>PLN03108 Rab family protein; Provisional
Probab=99.87 E-value=3.9e-21 Score=144.16 Aligned_cols=107 Identities=26% Similarity=0.333 Sum_probs=96.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++.
T Consensus 62 t~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (210)
T PLN03108 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 140 (210)
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHH
Confidence 7888773 78899999999999999999999999999999887664 35799999999999988778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+++.|+++||+++. ||+++|.++++.+++.
T Consensus 141 ~~~~~~e~Sa~~~~-~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 141 HGLIFMEASAKTAQ-NVEEAFIKTAAKIYKK 170 (210)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999988764
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.87 E-value=1.9e-21 Score=140.49 Aligned_cols=106 Identities=31% Similarity=0.400 Sum_probs=95.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..++++||++|+|||++++++|+.+..|+..+.... ..++|+++||||+|+.+.+.+..+++..++..
T Consensus 59 ~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (167)
T cd01867 59 TAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADE 137 (167)
T ss_pred CCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH
Confidence 7898873 77889999999999999999999999999999998764 36799999999999987777888888889998
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|+++++.+..
T Consensus 138 ~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~ 166 (167)
T cd01867 138 YGIKFLETSAKANI-NVEEAFFTLAKDIKK 166 (167)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence 89999999999999 999999999988764
No 51
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=1.5e-21 Score=139.92 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=97.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...+++++|++|+|||+++++||+.+..|+..+..... .++|++|||||+|+.+.+.++.+++..++..
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~ 133 (162)
T PF00071_consen 55 TSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKE 133 (162)
T ss_dssp ETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHH
Confidence 6788774 778899999999999999999999999999999999872 4799999999999988889999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++..|++|||+++. ||.++|..+++.+.
T Consensus 134 ~~~~~~e~Sa~~~~-~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 134 LGVPYFEVSAKNGE-NVKEIFQELIRKIL 161 (162)
T ss_dssp TTSEEEEEBTTTTT-THHHHHHHHHHHHH
T ss_pred hCCEEEEEECCCCC-CHHHHHHHHHHHHh
Confidence 99999999999999 99999999998875
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=1.2e-21 Score=147.83 Aligned_cols=104 Identities=22% Similarity=0.284 Sum_probs=91.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ ++..||+++|++|+|||+++++||+.+..|+.++.... .++|++|||||+|+.. +.+..+++ .++..
T Consensus 69 t~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~ 144 (219)
T PLN03071 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 144 (219)
T ss_pred CCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhh-ccCCHHHH-HHHHh
Confidence 8999884 88899999999999999999999999999999998775 6799999999999964 44555555 67777
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.++.||+|||++|. ||+++|.+|+..+.+.
T Consensus 145 ~~~~~~e~SAk~~~-~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 145 KNLQYYEISAKSNY-NFEKPFLYLARKLAGD 174 (219)
T ss_pred cCCEEEEcCCCCCC-CHHHHHHHHHHHHHcC
Confidence 88999999999999 9999999999998764
No 53
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.87 E-value=2e-21 Score=140.90 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=92.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..+++++|++|+|||+++++||+.+. .|+..+.... +++|++|||||+|+... +
T Consensus 53 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 130 (174)
T smart00174 53 TAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQE 130 (174)
T ss_pred CCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCC
Confidence 8999884 8888999999999999999999999996 5999988765 68999999999999653 2
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++..++...+. .|++|||++|. ||+++|..+++.+.+
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~lf~~l~~~~~~ 173 (174)
T smart00174 131 PVTYEQGEALAKRIGAVKYLECSALTQE-GVREVFEEAIRAALN 173 (174)
T ss_pred CccHHHHHHHHHHcCCcEEEEecCCCCC-CHHHHHHHHHHHhcC
Confidence 3778888899999986 89999999999 999999999987754
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2.8e-21 Score=142.75 Aligned_cols=111 Identities=25% Similarity=0.290 Sum_probs=99.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+++..|+..+.... ..++|+++||||+|+...+.+..+++..++..
T Consensus 57 t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~ 135 (191)
T cd04112 57 TAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKE 135 (191)
T ss_pred CCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHH
Confidence 7898874 77889999999999999999999999999999998875 35799999999999977777888888889988
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG 114 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~ 114 (173)
+++.|+++||++|. ||+++|.+|++.+.+....+
T Consensus 136 ~~~~~~e~Sa~~~~-~v~~l~~~l~~~~~~~~~~~ 169 (191)
T cd04112 136 YGVPFMETSAKTGL-NVELAFTAVAKELKHRKYEQ 169 (191)
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHhcccc
Confidence 89999999999999 99999999999998765443
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.87 E-value=2.1e-21 Score=142.61 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=90.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-----CccCCHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-----LRQVDESLGR 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-----~~~v~~~~~~ 74 (173)
|+|++++ ++..|+++||++++|||+++++||+++..|+.++.... ...+| |+||||+|+.. ......+++.
T Consensus 56 t~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~ 133 (182)
T cd04128 56 LGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQAR 133 (182)
T ss_pred CCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHH
Confidence 7899874 88899999999999999999999999999999998765 24566 68999999842 1112245677
Q ss_pred HHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 75 ~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.+++..++.+++|||++|. ||+++|.++++.+.+-+..
T Consensus 134 ~~a~~~~~~~~e~SAk~g~-~v~~lf~~l~~~l~~~~~~ 171 (182)
T cd04128 134 KYAKAMKAPLIFCSTSHSI-NVQKIFKIVLAKAFDLPLT 171 (182)
T ss_pred HHHHHcCCEEEEEeCCCCC-CHHHHHHHHHHHHHhcCCC
Confidence 8888889999999999999 9999999999988874433
No 56
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.87 E-value=3.1e-21 Score=139.01 Aligned_cols=106 Identities=32% Similarity=0.361 Sum_probs=95.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||+++++||+.+..|+..+.... ..++|+++||||+|+...+.+..+++..++..
T Consensus 58 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 136 (166)
T cd01869 58 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE 136 (166)
T ss_pred CCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHH
Confidence 7898874 78899999999999999999999999999999998765 35789999999999987777888889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++++|+++||++|. ||+++|.+|++.+..
T Consensus 137 ~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~ 165 (166)
T cd01869 137 LGIPFLETSAKNAT-NVEQAFMTMAREIKK 165 (166)
T ss_pred cCCeEEEEECCCCc-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999987753
No 57
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=3.1e-21 Score=138.50 Aligned_cols=107 Identities=25% Similarity=0.357 Sum_probs=95.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC----CCCcEEEEEeCCCCCCCccCCHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV----NNVPVMLLANKLDLEHLRQVDESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~~piilv~NK~Dl~~~~~v~~~~~~~ 75 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+..|+.++...... .++|+++|+||+|+.+.+.+..+++..
T Consensus 56 t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 135 (168)
T cd04119 56 LSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL 135 (168)
T ss_pred CCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH
Confidence 7898773 8889999999999999999999999999999999887632 569999999999997667778888888
Q ss_pred HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++...++.++++||++|. ||+++|++|++.+.+
T Consensus 136 ~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~l~~ 168 (168)
T cd04119 136 WAESKGFKYFETSACTGE-GVNEMFQTLFSSIVD 168 (168)
T ss_pred HHHHcCCeEEEEECCCCC-CHHHHHHHHHHHHhC
Confidence 888888999999999999 999999999987753
No 58
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.87 E-value=3.6e-21 Score=138.75 Aligned_cols=103 Identities=28% Similarity=0.454 Sum_probs=91.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|+++. +...+++++|++|+|||+++++||+.+..|+..+.+... ..++|++|||||+|+...+++..+++..++
T Consensus 56 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 135 (165)
T cd04140 56 TTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA 135 (165)
T ss_pred CCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH
Confidence 8999884 778899999999999999999999999999888876542 257999999999999876778888888888
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
..+++.|++|||++|. ||+++|++|++
T Consensus 136 ~~~~~~~~e~SA~~g~-~v~~~f~~l~~ 162 (165)
T cd04140 136 TEWNCAFMETSAKTNH-NVQELFQELLN 162 (165)
T ss_pred HHhCCcEEEeecCCCC-CHHHHHHHHHh
Confidence 8888999999999999 99999999985
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=4.7e-21 Score=137.39 Aligned_cols=105 Identities=28% Similarity=0.401 Sum_probs=94.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++++|||++++.+|+.+..|+..+.+.....++|++||+||+|+...+.+..+++..+++.
T Consensus 57 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~ 136 (164)
T cd04145 57 TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARK 136 (164)
T ss_pred CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHH
Confidence 8999884 88899999999999999999999999999999988765346799999999999987777777788888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||++|. ||+++|++|++.+
T Consensus 137 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIPYIETSAKDRL-NVDKAFHDLVRVI 163 (164)
T ss_pred cCCcEEEeeCCCCC-CHHHHHHHHHHhh
Confidence 88999999999999 9999999998754
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.86 E-value=6.8e-21 Score=136.76 Aligned_cols=106 Identities=30% Similarity=0.480 Sum_probs=95.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|...+.+.....++|+++||||+|+...+.+..+++..+++.
T Consensus 55 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~ 134 (164)
T smart00173 55 TAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ 134 (164)
T ss_pred CCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH
Confidence 8999884 88899999999999999999999999999998887765445799999999999987677777888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.+..|+++||++|. |++++|++|++.+.
T Consensus 135 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~ 162 (164)
T smart00173 135 WGCPFLETSAKERV-NVDEAFYDLVREIR 162 (164)
T ss_pred cCCEEEEeecCCCC-CHHHHHHHHHHHHh
Confidence 88999999999999 99999999998765
No 61
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.86 E-value=3.7e-21 Score=137.78 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=92.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++++|||++++++|+.+..|+..+.... .++|+++|+||+|+...+.++.+++..++..
T Consensus 58 ~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~ 135 (162)
T cd04106 58 TAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR 135 (162)
T ss_pred CCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999987655 6899999999999987778888889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.+++++++||++|. |++++|++|+..
T Consensus 136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~ 161 (162)
T cd04106 136 LQLPLFRTSVKDDF-NVTELFEYLAEK 161 (162)
T ss_pred cCCeEEEEECCCCC-CHHHHHHHHHHh
Confidence 99999999999999 999999999764
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=5.8e-21 Score=138.14 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=91.3
Q ss_pred CCCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 1 MTIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 1 ~TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
.|+|+++. ++..|+.++|++|+|||+++++||+.+..|+.++.... .++|+++||||+|+.. +.+.. +...++.
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~ 130 (166)
T cd00877 55 DTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD-RKVKA-KQITFHR 130 (166)
T ss_pred ECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc-ccCCH-HHHHHHH
Confidence 38999883 78899999999999999999999999999999998876 4899999999999973 44433 3456677
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
..++.|+++||++|. ||+++|.+|++.+.+.+
T Consensus 131 ~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 131 KKNLQYYEISAKSNY-NFEKPFLWLARKLLGNP 162 (166)
T ss_pred HcCCEEEEEeCCCCC-ChHHHHHHHHHHHHhcc
Confidence 778899999999999 99999999999987643
No 63
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.86 E-value=6.2e-21 Score=138.55 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=92.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~ 77 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+..|+.++.+...+.++|+++||||+|+.+... +..+++..++
T Consensus 56 t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~ 135 (170)
T cd04108 56 TAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA 135 (170)
T ss_pred CCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH
Confidence 7899874 88999999999999999999999999999999987654345678999999999965433 3466777888
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++..|+++||++|. ||+++|..|+..+.+
T Consensus 136 ~~~~~~~~e~Sa~~g~-~v~~lf~~l~~~~~~ 166 (170)
T cd04108 136 AEMQAEYWSVSALSGE-NVREFFFRVAALTFE 166 (170)
T ss_pred HHcCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 8888899999999999 999999999988765
No 64
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.3e-20 Score=138.71 Aligned_cols=106 Identities=26% Similarity=0.288 Sum_probs=96.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..+++++|++|+|||++++++|+.+..|+.++.... ...+|+++||||+|+.+.+.+..+++..++..
T Consensus 56 t~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~ 134 (188)
T cd04125 56 TNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDS 134 (188)
T ss_pred CCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHH
Confidence 7888773 88899999999999999999999999999999998765 35689999999999987788888888889888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.|+++||++|. ||+++|.+|++.+..
T Consensus 135 ~~~~~~evSa~~~~-~i~~~f~~l~~~~~~ 163 (188)
T cd04125 135 LNIPFFETSAKQSI-NVEEAFILLVKLIIK 163 (188)
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 89999999999999 999999999998875
No 65
>KOG4252|consensus
Probab=99.86 E-value=2.2e-21 Score=138.40 Aligned_cols=108 Identities=22% Similarity=0.279 Sum_probs=101.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
||||+++ ++..||++|.+.++||+.+|..||+.+..|++++.... .++|.++|-||+||.+..+++..+++.+++.
T Consensus 76 tagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~ 153 (246)
T KOG4252|consen 76 TAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKK 153 (246)
T ss_pred hccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHH
Confidence 8999995 99999999999999999999999999999999999887 7899999999999999899999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
+.+.++.+|++... ||.++|..|++.+.+...
T Consensus 154 l~~RlyRtSvked~-NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 154 LHKRLYRTSVKEDF-NVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred hhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998876443
No 66
>PLN03110 Rab GTPase; Provisional
Probab=99.86 E-value=7.2e-21 Score=143.31 Aligned_cols=106 Identities=31% Similarity=0.429 Sum_probs=97.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++||||+|+...+.+..+++..++..
T Consensus 68 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~ 146 (216)
T PLN03110 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK 146 (216)
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHH
Confidence 7899873 88899999999999999999999999999999988765 35799999999999988788888899999998
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.|+++||++|. ||+++|++|+..+.+
T Consensus 147 ~~~~~~e~SA~~g~-~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 147 EGLSFLETSALEAT-NVEKAFQTILLEIYH 175 (216)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 89999999999999 999999999998876
No 67
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=1e-20 Score=136.08 Aligned_cols=104 Identities=34% Similarity=0.456 Sum_probs=93.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|+++++++|+|||++++.+|+.+..|+.++.+.. ..++|++|||||+|+...+.+..++...++..
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (165)
T cd01868 59 TAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK 137 (165)
T ss_pred CCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHH
Confidence 7888873 88899999999999999999999999999999998876 34699999999999987777888888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||++|. |++++|++|+..+
T Consensus 138 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~i 164 (165)
T cd01868 138 NGLSFIETSALDGT-NVEEAFKQLLTEI 164 (165)
T ss_pred cCCEEEEEECCCCC-CHHHHHHHHHHHh
Confidence 88999999999999 9999999998765
No 68
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=9.4e-21 Score=139.13 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=93.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC----ccCCHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL----RQVDESLGR 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~----~~v~~~~~~ 74 (173)
|||+++. ++..|++++|++|+|||+++++||+++. .|+..+.... +++|+|+||||+|+... +.+..+++.
T Consensus 56 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~ 133 (187)
T cd04132 56 TAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAE 133 (187)
T ss_pred CCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHH
Confidence 8999874 8888999999999999999999999996 5998887654 67999999999999653 356788888
Q ss_pred HHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 75 STAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 75 ~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.++..+++ .++++||++|. ||+++|..+++.+....
T Consensus 134 ~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 134 SVAKKQGAFAYLECSAKTME-NVEEVFDTAIEEALKKE 170 (187)
T ss_pred HHHHHcCCcEEEEccCCCCC-CHHHHHHHHHHHHHhhh
Confidence 99999887 89999999999 99999999999887643
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=1.4e-20 Score=136.08 Aligned_cols=106 Identities=28% Similarity=0.352 Sum_probs=95.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...|++++|++|+|||+++++||+.+..|+.++.... .+++|++|||||+|+.+.+.++.+++..++..
T Consensus 60 t~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~ 138 (168)
T cd01866 60 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE 138 (168)
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH
Confidence 7898873 78889999999999999999999999999999998765 36799999999999987677888888889988
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.|+++||+++. ||+++|.++++.+.+
T Consensus 139 ~~~~~~e~Sa~~~~-~i~~~~~~~~~~~~~ 167 (168)
T cd01866 139 HGLIFMETSAKTAS-NVEEAFINTAKEIYE 167 (168)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence 89999999999999 999999999988765
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.85 E-value=1.7e-20 Score=133.93 Aligned_cols=104 Identities=25% Similarity=0.401 Sum_probs=92.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++++|||+++..+|+.+..|+..+.+.....++|++||+||+|+.+ +.+...++..++..
T Consensus 56 t~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~ 134 (162)
T cd04138 56 TAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKS 134 (162)
T ss_pred CCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHH
Confidence 8999883 88999999999999999999999999999999988775446899999999999975 55667778888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||++|. |++++|++|++.+
T Consensus 135 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 161 (162)
T cd04138 135 YGIPYIETSAKTRQ-GVEEAFYTLVREI 161 (162)
T ss_pred hCCeEEEecCCCCC-CHHHHHHHHHHHh
Confidence 88999999999999 9999999998754
No 71
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.85 E-value=1e-20 Score=137.10 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=94.7
Q ss_pred CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|+++. +...|++++|++|+|||++++++|+.+..|+.++.......++|+++|+||+|+...+.+..+++..++.
T Consensus 58 t~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 137 (170)
T cd04115 58 TAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD 137 (170)
T ss_pred CCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH
Confidence 7898863 6788999999999999999999999999999999876544679999999999998888888888999999
Q ss_pred hcCCeEEEEcccC---CcccHHHHHHHHHHHH
Q psy2792 79 KYNCTFHEVSVAD---NSPAIYQAFDHLLTES 107 (173)
Q Consensus 79 ~~~~~~~e~Sak~---g~~~v~~lf~~l~~~i 107 (173)
..++.|+++||++ +. +|+++|..++..+
T Consensus 138 ~~~~~~~e~Sa~~~~~~~-~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFETSAKDPSEND-HVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEEEeccCCcCCC-CHHHHHHHHHHHh
Confidence 8889999999999 88 9999999998765
No 72
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.85 E-value=1.7e-20 Score=135.04 Aligned_cols=106 Identities=37% Similarity=0.591 Sum_probs=93.3
Q ss_pred CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|+++ .....+++++|++|+|||+++++||+.+..|+..+..... ..++|+++||||+|+...+.++.+++..++
T Consensus 54 ~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 133 (165)
T cd04146 54 TAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA 133 (165)
T ss_pred CCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH
Confidence 789884 3677899999999999999999999999999988887642 357999999999999777788888888999
Q ss_pred hhcCCeEEEEcccCC-cccHHHHHHHHHHHHh
Q psy2792 78 VKYNCTFHEVSVADN-SPAIYQAFDHLLTESR 108 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g-~~~v~~lf~~l~~~i~ 108 (173)
...++.|+++||++| . ||+++|+.|++.+.
T Consensus 134 ~~~~~~~~e~Sa~~~~~-~v~~~f~~l~~~~~ 164 (165)
T cd04146 134 SELGCLFFEVSAAEDYD-GVHSVFHELCREVR 164 (165)
T ss_pred HHcCCEEEEeCCCCCch-hHHHHHHHHHHHHh
Confidence 988999999999999 6 89999999998764
No 73
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.85 E-value=1.3e-20 Score=142.50 Aligned_cols=107 Identities=27% Similarity=0.419 Sum_probs=95.3
Q ss_pred CCCCCCccHhhhcc-cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792 2 TIGLTEGTLTAMIC-WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80 (173)
Q Consensus 2 TaG~e~~~~~~y~~-~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~ 80 (173)
|+|++..+...++. ++|++|+|||++++.||+.+..|+..+.......++|+|+|+||+|+...+.++.+++..++...
T Consensus 57 t~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~ 136 (221)
T cd04148 57 HWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF 136 (221)
T ss_pred CCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc
Confidence 78888556677788 99999999999999999999999999887653467999999999999877888888888888888
Q ss_pred CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 81 NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 81 ~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++.|+++||+++. ||+++|++|+..+..
T Consensus 137 ~~~~~e~SA~~~~-gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFIETSAGLQH-NVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEEEecCCCCC-CHHHHHHHHHHHHHh
Confidence 8999999999999 999999999998875
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.85 E-value=3.9e-20 Score=141.94 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=91.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--------CCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR--------AVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|+|++++ ++..|+.++|++|+|||+++++||+.+..|+.++.+.. ...++|+||||||+|+...+++..+
T Consensus 55 t~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ 134 (247)
T cd04143 55 TSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRD 134 (247)
T ss_pred CCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHH
Confidence 7898874 78889999999999999999999999999999987642 1257999999999999876778888
Q ss_pred HHHHHhhh-cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 72 LGRSTAVK-YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 72 ~~~~~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++..++.. .++.|+++||++|. ||+++|++|+..+.
T Consensus 135 ei~~~~~~~~~~~~~evSAktg~-gI~elf~~L~~~~~ 171 (247)
T cd04143 135 EVEQLVGGDENCAYFEVSAKKNS-NLDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHhcCCCEEEEEeCCCCC-CHHHHHHHHHHHhc
Confidence 88777653 46789999999999 99999999998664
No 75
>KOG0393|consensus
Probab=99.84 E-value=9.5e-21 Score=138.73 Aligned_cols=108 Identities=21% Similarity=0.312 Sum_probs=97.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|||||++ +++..|.++|+||+||++.+++||+++. .|+.++..++ +++|+||||+|.||.+. .
T Consensus 60 TAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~ 137 (198)
T KOG0393|consen 60 TAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLE 137 (198)
T ss_pred cCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCC
Confidence 9999995 8888999999999999999999999985 5999999998 89999999999999732 3
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
.|+.+++..++++.| ..|+||||++.. |+.++|+..+...+..+.
T Consensus 138 ~Vt~~~g~~lA~~iga~~y~EcSa~tq~-~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 138 PVTYEQGLELAKEIGAVKYLECSALTQK-GVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred cccHHHHHHHHHHhCcceeeeehhhhhC-CcHHHHHHHHHHHhcccc
Confidence 678899999999999 669999999999 999999999998887543
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.84 E-value=2.9e-20 Score=133.51 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=91.7
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++. .+...+++++|++|+|||++++++|+.+..|+..+.... .++|+++|+||+|+.+..++...++..++..
T Consensus 59 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 136 (164)
T cd04101 59 SAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQA 136 (164)
T ss_pred CCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence 788876 378899999999999999999999999999999988765 5799999999999987777777777778877
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||+++. ||+++|+.|++.+
T Consensus 137 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 163 (164)
T cd04101 137 NQLKFFKTSALRGV-GYEEPFESLARAF 163 (164)
T ss_pred cCCeEEEEeCCCCC-ChHHHHHHHHHHh
Confidence 88899999999999 9999999998764
No 77
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=2.8e-20 Score=133.94 Aligned_cols=103 Identities=26% Similarity=0.312 Sum_probs=91.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..+++++|++++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..+++.
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (165)
T cd01864 59 TAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK 137 (165)
T ss_pred CCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 7898774 78899999999999999999999999999999998754 36799999999999987777888888888888
Q ss_pred cCC-eEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNC-TFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~-~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.+. .++++||++|. |++++|+++++.
T Consensus 138 ~~~~~~~e~Sa~~~~-~v~~~~~~l~~~ 164 (165)
T cd01864 138 NGMLAVLETSAKESQ-NVEEAFLLMATE 164 (165)
T ss_pred cCCcEEEEEECCCCC-CHHHHHHHHHHh
Confidence 875 68999999999 999999999864
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.84 E-value=3.8e-20 Score=132.57 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=93.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..+++++|++|+|||++++++|+.+..|+..+.... .+++|++||+||+|+...+.+..+++..++..
T Consensus 56 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 134 (161)
T cd04113 56 TAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQE 134 (161)
T ss_pred CcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHHH
Confidence 7888773 78899999999999999999999999999999887665 46899999999999987777888889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++.++++||+++. |++++|+++++.
T Consensus 135 ~~~~~~~~Sa~~~~-~i~~~~~~~~~~ 160 (161)
T cd04113 135 NGLLFLETSALTGE-NVEEAFLKCARS 160 (161)
T ss_pred cCCEEEEEECCCCC-CHHHHHHHHHHh
Confidence 99999999999999 999999999875
No 79
>PLN03118 Rab family protein; Provisional
Probab=99.84 E-value=1.4e-19 Score=135.76 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=95.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+.. |...+.......++|++|||||+|+...+.+..+++..++.
T Consensus 69 t~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~ 148 (211)
T PLN03118 69 TAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK 148 (211)
T ss_pred CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH
Confidence 8999884 88999999999999999999999999975 77666654433568999999999998777788888888888
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
..++.|+++||+++. ||+++|.+|+..+.+.+.
T Consensus 149 ~~~~~~~e~SAk~~~-~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 149 EHGCLFLECSAKTRE-NVEQCFEELALKIMEVPS 181 (211)
T ss_pred HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHhhhh
Confidence 889999999999999 999999999999987543
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.84 E-value=4.5e-20 Score=134.06 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=88.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH------------LR 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~ 66 (173)
|+|+++. ++..|++++|++|+|||+++++||+.+. .|+..+.... +++|+++||||+|+.. .+
T Consensus 55 t~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 132 (173)
T cd04130 55 TAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEK 132 (173)
T ss_pred CCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCC
Confidence 7899874 7888999999999999999999999985 6998887643 5799999999999863 45
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHH
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
.+..+++..++...+. .|++|||++|. ||+++|+.++-
T Consensus 133 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~-~v~~lf~~~~~ 171 (173)
T cd04130 133 PVSQSRAKALAEKIGACEYIECSALTQK-NLKEVFDTAIL 171 (173)
T ss_pred CcCHHHHHHHHHHhCCCeEEEEeCCCCC-CHHHHHHHHHh
Confidence 7788889999998887 89999999999 99999998763
No 81
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.84 E-value=5.1e-20 Score=133.11 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=90.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|+|+++. ++..|++++|++|+|||+++++||+.+..|+.++..... ..++|++|||||+|+. .+.+..+++..+
T Consensus 61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~ 139 (170)
T cd04116 61 TAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAW 139 (170)
T ss_pred CCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHH
Confidence 7898873 888999999999999999999999999999998876542 2568999999999986 467778889999
Q ss_pred hhhcC-CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 77 ~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+..++ +.++++||++|. ||.++|.++++.
T Consensus 140 ~~~~~~~~~~e~Sa~~~~-~v~~~~~~~~~~ 169 (170)
T cd04116 140 CRENGDYPYFETSAKDAT-NVAAAFEEAVRR 169 (170)
T ss_pred HHHCCCCeEEEEECCCCC-CHHHHHHHHHhh
Confidence 98887 479999999999 999999999864
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.83 E-value=1.2e-19 Score=131.21 Aligned_cols=106 Identities=26% Similarity=0.346 Sum_probs=94.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ +++.|++++|++|+|||++++++|+.+..|...+.+.....++|+++|+||+|+...+.+..+++..+++.
T Consensus 56 t~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~ 135 (168)
T cd04177 56 TAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ 135 (168)
T ss_pred CCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH
Confidence 8999884 89999999999999999999999999999999988755446899999999999987777777888888888
Q ss_pred cC-CeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 80 YN-CTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 80 ~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++ +.++++||++|. ||+++|.+++..++
T Consensus 136 ~~~~~~~~~SA~~~~-~i~~~f~~i~~~~~ 164 (168)
T cd04177 136 WGNVPFYETSARKRT-NVDEVFIDLVRQII 164 (168)
T ss_pred cCCceEEEeeCCCCC-CHHHHHHHHHHHHh
Confidence 87 789999999999 99999999998664
No 83
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.83 E-value=9.6e-20 Score=130.95 Aligned_cols=102 Identities=24% Similarity=0.315 Sum_probs=88.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+++..|+..+.+.. +++|+++|+||+|+... + .++...++..
T Consensus 56 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~ 130 (161)
T cd04124 56 TAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPS--V-TQKKFNFAEK 130 (161)
T ss_pred CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchh--H-HHHHHHHHHH
Confidence 7899883 88999999999999999999999999999999998764 57999999999998532 1 3445566777
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++++++||++|. |++++|+.+++.+.+
T Consensus 131 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~ 159 (161)
T cd04124 131 HNLPLYYVSAADGT-NVVKLFQDAIKLAVS 159 (161)
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence 78899999999999 999999999988876
No 84
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.83 E-value=9.9e-20 Score=135.44 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=85.3
Q ss_pred HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-hcCCeEEE
Q psy2792 10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTAV-KYNCTFHE 86 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e 86 (173)
...+++++|++|+|||+++++||+.+..|+..+.+... ..++|++|||||+|+...+.+..+++..++. .+++.|++
T Consensus 74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 153 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE 153 (198)
T ss_pred HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence 34568999999999999999999999999998887641 3679999999999997767777777777654 56789999
Q ss_pred EcccCCcccHHHHHHHHHHHHhc
Q psy2792 87 VSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
|||++|. ||+++|+.++..+..
T Consensus 154 ~Sak~g~-~v~~lf~~i~~~~~~ 175 (198)
T cd04142 154 CSAKYNW-HILLLFKELLISATT 175 (198)
T ss_pred ecCCCCC-CHHHHHHHHHHHhhc
Confidence 9999999 999999999988876
No 85
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.83 E-value=1.5e-19 Score=133.39 Aligned_cols=106 Identities=23% Similarity=0.204 Sum_probs=92.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC----ccCCHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL----RQVDESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~----~~v~~~~~~~ 75 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.... .++|+++|+||+|+... +.+..+++..
T Consensus 57 ~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (193)
T cd04118 57 TAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD 134 (193)
T ss_pred CCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHH
Confidence 7999873 78889999999999999999999999999999988754 57999999999998532 4556677788
Q ss_pred HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
++...++.++++||++|. ||+++|++|++.+.+.
T Consensus 135 ~~~~~~~~~~~~Sa~~~~-gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 135 FADEIKAQHFETSSKTGQ-NVDELFQKVAEDFVSR 168 (193)
T ss_pred HHHHcCCeEEEEeCCCCC-CHHHHHHHHHHHHHHh
Confidence 888888999999999999 9999999999988763
No 86
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.82 E-value=1.4e-19 Score=131.07 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=88.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+++..|+..+.......++|++||+||+|+.. .++.+++..++..
T Consensus 50 t~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~ 127 (169)
T cd04158 50 VGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSL 127 (169)
T ss_pred CCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCC
Confidence 7898874 78899999999999999999999999999998887654335689999999999963 3566767666543
Q ss_pred cC------CeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YN------CTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~------~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
.+ +.+++|||++|. ||+++|++|++.+.+..+
T Consensus 128 ~~~~~~~~~~~~~~Sa~~g~-gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 128 HKLCCGRSWYIQGCDARSGM-GLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred ccccCCCcEEEEeCcCCCCC-CHHHHHHHHHHHHhhccc
Confidence 22 368899999999 999999999998887554
No 87
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.82 E-value=2e-19 Score=132.45 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=91.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC----------CccC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH----------LRQV 68 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~----------~~~v 68 (173)
|+|+++. +.+.++.++|++|+|||+++.++|+.+. .|+..+.... +++|++|||||+|+.+ .+.+
T Consensus 56 t~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 133 (187)
T cd04129 56 TAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFV 133 (187)
T ss_pred CCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcC
Confidence 7888774 5667889999999999999999999996 5999998765 5799999999999853 3456
Q ss_pred CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
..+++..+++..+. .||+|||++|. ||+++|+++++.+....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 134 PIQQGKRVAKEIGAKKYMECSALTGE-GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHhCCcEEEEccCCCCC-CHHHHHHHHHHHHhcccC
Confidence 66788888988884 79999999999 999999999988876433
No 88
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=1.9e-19 Score=128.87 Aligned_cols=106 Identities=30% Similarity=0.367 Sum_probs=94.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...+++++|++|+|||++++.+|+.+..|+..+..+. .+++|+++|+||+|+...+++..+.+..++..
T Consensus 56 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~ 134 (164)
T smart00175 56 TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEE 134 (164)
T ss_pred CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHH
Confidence 6787763 78889999999999999999999999999999988775 36899999999999987677788888889988
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. |++++|++|++.+.+
T Consensus 135 ~~~~~~e~Sa~~~~-~i~~l~~~i~~~~~~ 163 (164)
T smart00175 135 HGLPFFETSAKTNT-NVEEAFEELAREILK 163 (164)
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence 89999999999999 999999999998765
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=3e-19 Score=129.43 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=89.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|++++ ++..++.++|++|+|||++++++|+.+. .|+..+.... +++|+++||||+|+.+. +
T Consensus 55 t~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 132 (174)
T cd04135 55 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPYLLVGTQIDLRDDPKTLARLNDMKEK 132 (174)
T ss_pred CCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeEchhhhcChhhHHHHhhccCC
Confidence 7899873 8888999999999999999999999995 6888887653 78999999999998543 3
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.+++..+++..++ .|++|||++|. ||+++|+.++..+
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-gi~~~f~~~~~~~ 173 (174)
T cd04135 133 PVTVEQGQKLAKEIGAHCYVECSALTQK-GLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCcCC-CHHHHHHHHHHHh
Confidence 6778888999988885 69999999999 9999999998765
No 90
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.81 E-value=1.8e-19 Score=130.62 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=81.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +++.||++||++|+|||++++.+|+++..|+.++.......++|++||+||+|+.+ .+..+++..++..
T Consensus 60 t~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~ 137 (168)
T cd04149 60 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGL 137 (168)
T ss_pred CCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCC
Confidence 7999874 78899999999999999999999999988887776543235789999999999864 3456666665421
Q ss_pred -----cCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 80 -----YNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 80 -----~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
..+.++++||++|. ||+++|++|++
T Consensus 138 ~~~~~~~~~~~~~SAk~g~-gv~~~~~~l~~ 167 (168)
T cd04149 138 TRIRDRNWYVQPSCATSGD-GLYEGLTWLSS 167 (168)
T ss_pred CccCCCcEEEEEeeCCCCC-ChHHHHHHHhc
Confidence 23568999999999 99999999974
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=5.4e-19 Score=126.08 Aligned_cols=104 Identities=28% Similarity=0.370 Sum_probs=92.5
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .+++.++.++|++++|||+++.++|+.+..|+.++..... .++|+++|+||+|+...+.+..++...++..
T Consensus 56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~ 134 (162)
T cd04123 56 TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS 134 (162)
T ss_pred CCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence 678776 3788899999999999999999999999999999987762 4799999999999987777778888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||+++. |++++|+++++.+
T Consensus 135 ~~~~~~~~s~~~~~-gi~~~~~~l~~~~ 161 (162)
T cd04123 135 VGAKHFETSAKTGK-GIEELFLSLAKRM 161 (162)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHh
Confidence 89999999999999 9999999998765
No 92
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.81 E-value=6.5e-19 Score=126.22 Aligned_cols=104 Identities=28% Similarity=0.333 Sum_probs=93.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+....|+..+.... ...+|+++|+||+|+...+.+..++...++..
T Consensus 57 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 135 (163)
T cd01860 57 TAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADE 135 (163)
T ss_pred CCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHH
Confidence 7888763 77889999999999999999999999999999988765 36799999999999986677778888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||++|. |++++|++|++.+
T Consensus 136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~l 162 (163)
T cd01860 136 NGLLFFETSAKTGE-NVNELFTEIAKKL 162 (163)
T ss_pred cCCEEEEEECCCCC-CHHHHHHHHHHHh
Confidence 88999999999999 9999999999875
No 93
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.81 E-value=1.2e-19 Score=132.39 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 77 (173)
|+|+++. ++..||++||++|+|||++++++|+.+..|+..+.......++|++|||||+|+.+.. ..++.....
T Consensus 64 ~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~ 141 (175)
T smart00177 64 VGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGL 141 (175)
T ss_pred CCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCc
Confidence 7899874 8899999999999999999999999999888887654323579999999999996432 233332221
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
....+.++++||++|. ||+++|++|.+.+
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~-gv~e~~~~l~~~~ 173 (175)
T smart00177 142 HSIRDRNWYIQPTCATSGD-GLYEGLTWLSNNL 173 (175)
T ss_pred cccCCCcEEEEEeeCCCCC-CHHHHHHHHHHHh
Confidence 1223457799999999 9999999998764
No 94
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.81 E-value=5.5e-19 Score=126.34 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=91.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...+++++|++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..
T Consensus 56 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~ 134 (161)
T cd01861 56 TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE 134 (161)
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHH
Confidence 7888774 78889999999999999999999999999999987654 24799999999999976677778888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++.++++||+++. |++++|.+|++.
T Consensus 135 ~~~~~~~~Sa~~~~-~v~~l~~~i~~~ 160 (161)
T cd01861 135 LNAMFIETSAKAGH-NVKELFRKIASA 160 (161)
T ss_pred hCCEEEEEeCCCCC-CHHHHHHHHHHh
Confidence 88999999999999 999999999874
No 95
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=1.4e-19 Score=130.59 Aligned_cols=101 Identities=25% Similarity=0.282 Sum_probs=84.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH----HHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE----SLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~----~~~~~ 75 (173)
|+|+++. ++..||++||++|+|||.+++.+|..+..|+.++.... +++|+++|+||+|+...+.+.. ..+..
T Consensus 51 t~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~ 128 (164)
T cd04162 51 IGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEP 128 (164)
T ss_pred CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChh
Confidence 7899874 88999999999999999999999999999998887544 6799999999999976554432 22455
Q ss_pred HhhhcCCeEEEEcccC------CcccHHHHHHHHHH
Q psy2792 76 TAVKYNCTFHEVSVAD------NSPAIYQAFDHLLT 105 (173)
Q Consensus 76 ~~~~~~~~~~e~Sak~------g~~~v~~lf~~l~~ 105 (173)
++.+.++.++++||++ ++ ||+++|+.++.
T Consensus 129 ~~~~~~~~~~~~Sa~~~~s~~~~~-~v~~~~~~~~~ 163 (164)
T cd04162 129 IARGRRWILQGTSLDDDGSPSRME-AVKDLLSQLIN 163 (164)
T ss_pred hcCCCceEEEEeeecCCCChhHHH-HHHHHHHHHhc
Confidence 6677788899999998 99 99999998864
No 96
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=1.1e-19 Score=130.61 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=78.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH-HHHHh-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL-GRSTA- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~-~~~~~- 77 (173)
|+|+++. ++..||++||++|||||++++.+|+.+..|+..+.......++|++||+||+|+.+. +..++ ...+.
T Consensus 51 ~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~ 128 (159)
T cd04150 51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGL 128 (159)
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence 7899874 789999999999999999999999999888877764332356899999999999642 22323 22222
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
...++.++++||++|. ||+++|++|++
T Consensus 129 ~~~~~~~~~~~~~Sak~g~-gv~~~~~~l~~ 158 (159)
T cd04150 129 HSLRNRNWYIQATCATSGD-GLYEGLDWLSN 158 (159)
T ss_pred cccCCCCEEEEEeeCCCCC-CHHHHHHHHhc
Confidence 1223457899999999 99999999874
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.80 E-value=9.5e-19 Score=125.20 Aligned_cols=103 Identities=29% Similarity=0.389 Sum_probs=91.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...+++++|++|+|||++++.+|+.+..|+..+..+....++|+++||||+|+.. ..+..++...++..
T Consensus 56 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~ 134 (161)
T cd01863 56 TAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARK 134 (161)
T ss_pred CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHH
Confidence 7888774 77889999999999999999999999999999998876557899999999999973 45667788888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++.++++||++|. |++++|+.+.+.
T Consensus 135 ~~~~~~~~Sa~~~~-gi~~~~~~~~~~ 160 (161)
T cd01863 135 HNMLFIETSAKTRD-GVQQAFEELVEK 160 (161)
T ss_pred cCCEEEEEecCCCC-CHHHHHHHHHHh
Confidence 89999999999999 999999998864
No 98
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=4e-19 Score=128.88 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=86.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..||+++|++|+|||++++++|+.+..|+..+.. ..++|+++|+||+|+.+.+.+...+...+++.
T Consensus 61 ~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 137 (169)
T cd01892 61 VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK 137 (169)
T ss_pred cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHH
Confidence 6788774 788899999999999999999999999999887643 24699999999999976555544556677777
Q ss_pred cCCe-EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCT-FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++. ++++||++|. |++++|..|++.+..
T Consensus 138 ~~~~~~~~~Sa~~~~-~v~~lf~~l~~~~~~ 167 (169)
T cd01892 138 LGLPPPLHFSSKLGD-SSNELFTKLATAAQY 167 (169)
T ss_pred cCCCCCEEEEeccCc-cHHHHHHHHHHHhhC
Confidence 7764 7999999999 999999999988764
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=5.9e-19 Score=129.47 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=81.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..||+++|++|+|||++++++|+.+..|+..+.......++|++|||||+|+.+. +..++......-
T Consensus 68 ~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l 145 (181)
T PLN00223 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGL 145 (181)
T ss_pred CCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence 7899873 889999999999999999999999998888877754322357999999999999753 333333332221
Q ss_pred c-----CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 Y-----NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~-----~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
. .+.+++|||++|+ ||+++|++|++.+..
T Consensus 146 ~~~~~~~~~~~~~Sa~~g~-gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 146 HSLRQRHWYIQSTCATSGE-GLYEGLDWLSNNIAN 179 (181)
T ss_pred cccCCCceEEEeccCCCCC-CHHHHHHHHHHHHhh
Confidence 1 1246689999999 999999999988754
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=1.6e-18 Score=128.71 Aligned_cols=113 Identities=27% Similarity=0.289 Sum_probs=92.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-CccCCHHHHHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-LRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~ 78 (173)
|+|+++. ++..|+.++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.. .+.+..++......
T Consensus 54 ~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~ 133 (198)
T cd04147 54 TSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE 133 (198)
T ss_pred CCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH
Confidence 7888773 77889999999999999999999999999999988876446799999999999965 35555555544443
Q ss_pred -hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCc
Q psy2792 79 -KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGI 115 (173)
Q Consensus 79 -~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~ 115 (173)
..+..|+++||++|. ||+++|++|++.+.......+
T Consensus 134 ~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 134 LDWNCGFVETSAKDNE-NVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred hhcCCcEEEecCCCCC-CHHHHHHHHHHHhhcccccch
Confidence 445789999999999 999999999998876555443
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=1.9e-18 Score=123.61 Aligned_cols=107 Identities=28% Similarity=0.393 Sum_probs=93.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..+++++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.....+...+...++..
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~ 134 (164)
T cd04139 55 TAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ 134 (164)
T ss_pred CCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH
Confidence 7888773 88899999999999999999999999999999888865446799999999999976555667777788888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++++++++||++|. |++++|+++++.+.+
T Consensus 135 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 163 (164)
T cd04139 135 WGVPYVETSAKTRQ-NVEKAFYDLVREIRQ 163 (164)
T ss_pred hCCeEEEeeCCCCC-CHHHHHHHHHHHHHh
Confidence 88999999999999 999999999987753
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.79 E-value=2.4e-18 Score=124.15 Aligned_cols=108 Identities=25% Similarity=0.325 Sum_probs=92.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|+|++.. ++..|++++|++|+|||++++++|+.+..|...+..... ..++|+++|+||+|+.....+..++...+
T Consensus 56 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 135 (172)
T cd01862 56 TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQW 135 (172)
T ss_pred CCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHH
Confidence 6788763 788999999999999999999999999999988766542 23799999999999976566677778888
Q ss_pred hhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 77 ~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
++..+ ..++++||++|. |++++|+++++.+.+.
T Consensus 136 ~~~~~~~~~~~~Sa~~~~-gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 136 CQSNGNIPYFETSAKEAI-NVEQAFETIARKALEQ 169 (172)
T ss_pred HHHcCCceEEEEECCCCC-CHHHHHHHHHHHHHhc
Confidence 88877 789999999999 9999999999988774
No 103
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.79 E-value=2.2e-18 Score=125.01 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=86.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..++.++|++++|||++++++|+.+. .|+..+.... .++|+++|+||+|+... .
T Consensus 56 t~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~ 133 (175)
T cd01870 56 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQE 133 (175)
T ss_pred CCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCC
Confidence 7899873 6678899999999999999999999985 5988887754 57999999999998532 3
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.+...++..++...+ ..+++|||++|. ||+++|.+|++.+
T Consensus 134 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~lf~~l~~~~ 174 (175)
T cd01870 134 PVKPEEGRDMANKIGAFGYMECSAKTKE-GVREVFEMATRAA 174 (175)
T ss_pred CccHHHHHHHHHHcCCcEEEEeccccCc-CHHHHHHHHHHHh
Confidence 355677788888777 479999999999 9999999998654
No 104
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.8e-18 Score=123.66 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=90.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. .+..|+..+|++|+|||+++..+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+....+...
T Consensus 63 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~ 141 (169)
T cd04114 63 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSDA 141 (169)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 6787663 66889999999999999999999999999999887765 35799999999999987777777777777777
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
....++++||++|. |++++|++|++.+
T Consensus 142 ~~~~~~~~Sa~~~~-gv~~l~~~i~~~~ 168 (169)
T cd04114 142 QDMYYLETSAKESD-NVEKLFLDLACRL 168 (169)
T ss_pred cCCeEEEeeCCCCC-CHHHHHHHHHHHh
Confidence 77889999999999 9999999999765
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=5.6e-19 Score=129.67 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=80.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 77 (173)
|+|+++. ++..||+++|++|+|||++++++|+++..|+..+.......++|++||+||+|+.+. +..++.....
T Consensus 68 ~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~ 145 (182)
T PTZ00133 68 VGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGL 145 (182)
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCC
Confidence 7899874 889999999999999999999999999888777654322356899999999998642 2333322211
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
....+.++++||++|. ||+++|++|++.+.+
T Consensus 146 ~~~~~~~~~~~~~Sa~tg~-gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 146 HSVRQRNWYIQGCCATTAQ-GLYEGLDWLSANIKK 179 (182)
T ss_pred CcccCCcEEEEeeeCCCCC-CHHHHHHHHHHHHHH
Confidence 1122356799999999 999999999987765
No 106
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.77 E-value=7.1e-18 Score=123.02 Aligned_cols=108 Identities=28% Similarity=0.383 Sum_probs=94.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..++.++|++|+|||+++..+|+.+..|+..+.+.....+.|+|+|+||+|+...+.+..++...++..
T Consensus 56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 135 (180)
T cd04137 56 TAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES 135 (180)
T ss_pred CCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH
Confidence 7888774 77889999999999999999999999999988887765346789999999999977677777777788888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+++.++++||+++. |+.++|.++++.+...
T Consensus 136 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 136 WGAAFLESSARENE-NVEEAFELLIEEIEKV 165 (180)
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHh
Confidence 88899999999999 9999999999988753
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.77 E-value=3e-18 Score=124.43 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=81.9
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV- 78 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~- 78 (173)
|||++. .++..|++++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+.. ..++...+..
T Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~ 142 (173)
T cd04154 65 VGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALEL 142 (173)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCc
Confidence 789986 37889999999999999999999999998898887654323679999999999996532 3445554442
Q ss_pred ----hcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 79 ----KYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 79 ----~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
..++.++++||++|. |++++|++++.
T Consensus 143 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~ 172 (173)
T cd04154 143 DKISSHHWRIQPCSAVTGE-GLLQGIDWLVD 172 (173)
T ss_pred cccCCCceEEEeccCCCCc-CHHHHHHHHhc
Confidence 345789999999999 99999999864
No 108
>KOG3883|consensus
Probab=99.77 E-value=8.5e-18 Score=117.21 Aligned_cols=107 Identities=29% Similarity=0.454 Sum_probs=98.4
Q ss_pred CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|||...+ +.++|+.-+|++++|||..|++||+.++....+|....+...+||+++|||+|+.+.+++..+.+..||+
T Consensus 67 TaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~ 146 (198)
T KOG3883|consen 67 TAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK 146 (198)
T ss_pred cccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh
Confidence 8898875 9999999999999999999999999887777777777767889999999999999889999999999999
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...+..++++|++.. .+-+.|..++..+..
T Consensus 147 rEkvkl~eVta~dR~-sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 147 REKVKLWEVTAMDRP-SLYEPFTYLASRLHQ 176 (198)
T ss_pred hhheeEEEEEeccch-hhhhHHHHHHHhccC
Confidence 999999999999999 999999999988765
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.77 E-value=5.1e-18 Score=124.59 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=85.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+++.+..|+.++.......++|++||+||+|+.. .+..++...+...
T Consensus 59 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~ 136 (183)
T cd04152 59 VGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLAL 136 (183)
T ss_pred CCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCc
Confidence 7899873 88999999999999999999999999999998887755345799999999999863 2334444443321
Q ss_pred ------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 ------YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|++.+.+
T Consensus 137 ~~~~~~~~~~~~~~SA~~~~-gi~~l~~~l~~~l~~ 171 (183)
T cd04152 137 HELSASTPWHVQPACAIIGE-GLQEGLEKLYEMILK 171 (183)
T ss_pred cccCCCCceEEEEeecccCC-CHHHHHHHHHHHHHH
Confidence 12468899999999 999999999998875
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=1.3e-17 Score=120.26 Aligned_cols=105 Identities=21% Similarity=0.147 Sum_probs=82.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~ 76 (173)
|+|+++. .+..++.++|++++|||++++++|+.+. .|+..+.... .++|+++|+||+|+.+..... .++...+
T Consensus 54 t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 131 (166)
T cd01893 54 TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPI 131 (166)
T ss_pred CCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHH
Confidence 7888763 5677789999999999999999999985 6888887765 579999999999997654421 2333334
Q ss_pred hhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 AVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 ~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+..+. ..+++|||++|. |++++|+.+...+..
T Consensus 132 ~~~~~~~~~~~e~Sa~~~~-~v~~lf~~~~~~~~~ 165 (166)
T cd01893 132 MNEFREIETCVECSAKTLI-NVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHhcccEEEEecccccc-CHHHHHHHHHHHhcC
Confidence 44332 379999999999 999999999987754
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.75 E-value=1.8e-17 Score=117.89 Aligned_cols=104 Identities=36% Similarity=0.550 Sum_probs=91.7
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .+...++.++|++++|||++++++++++..|...+........+|+++|+||+|+...+.+..+++..++..
T Consensus 54 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 133 (160)
T cd00876 54 TAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE 133 (160)
T ss_pred CCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH
Confidence 678776 377889999999999999999999999999998888765335799999999999987677788888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+++.++++||+++. |++++|++|+..
T Consensus 134 ~~~~~~~~S~~~~~-~i~~l~~~l~~~ 159 (160)
T cd00876 134 WGCPFIETSAKDNI-NIDEVFKLLVRE 159 (160)
T ss_pred cCCcEEEeccCCCC-CHHHHHHHHHhh
Confidence 88899999999999 999999999875
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=3.9e-18 Score=123.42 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=80.1
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH-H---HHHH
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE-S---LGRS 75 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~-~---~~~~ 75 (173)
|+|+++ .++..||+++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+.+.... . ....
T Consensus 50 ~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~ 129 (167)
T cd04161 50 LGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEK 129 (167)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccc
Confidence 688876 388999999999999999999999999999999887654335799999999999976442111 1 1123
Q ss_pred HhhhcC--CeEEEEcccCC------cccHHHHHHHHHH
Q psy2792 76 TAVKYN--CTFHEVSVADN------SPAIYQAFDHLLT 105 (173)
Q Consensus 76 ~~~~~~--~~~~e~Sak~g------~~~v~~lf~~l~~ 105 (173)
++++.+ +.+++|||++| . |+++.|+||+.
T Consensus 130 ~~~~~~~~~~~~~~Sa~~g~~~~~~~-g~~~~~~wl~~ 166 (167)
T cd04161 130 LVNENKSLCHIEPCSAIEGLGKKIDP-SIVEGLRWLLA 166 (167)
T ss_pred ccCCCCceEEEEEeEceeCCCCcccc-CHHHHHHHHhc
Confidence 343333 55788999998 7 99999999974
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.74 E-value=3.7e-17 Score=117.85 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=85.9
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc-----------c
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR-----------Q 67 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-----------~ 67 (173)
|+|+++ .+...+++.+|++++|||++++++|.... .|+..+.... .++|+++||||+|+.... .
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 132 (171)
T cd00157 55 TAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEP 132 (171)
T ss_pred CCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCc
Confidence 789987 37778899999999999999999998875 4888887765 589999999999986544 3
Q ss_pred CCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHH
Q psy2792 68 VDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 68 v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
+..+++..++..+++ .|+++||++|. |++++|++|++
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~i~~ 170 (171)
T cd00157 133 ITPEEGEKLAKEIGAIGYMECSALTQE-GVKEVFEEAIR 170 (171)
T ss_pred cCHHHHHHHHHHhCCeEEEEeecCCCC-CHHHHHHHHhh
Confidence 456777888888887 89999999999 99999999875
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=3.8e-17 Score=118.90 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH-HHHh-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG-RSTA- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-~~~~- 77 (173)
|+|+++. .+..|++++|++|+|||++++++|.....|+..+.......++|+++|+||+|+... +..++. ..+.
T Consensus 66 ~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~ 143 (174)
T cd04153 66 IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGL 143 (174)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence 7898773 788899999999999999999999988888877765443357999999999998642 233332 2222
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
...++.+++|||++|. ||+++|++|++
T Consensus 144 ~~~~~~~~~~~~~SA~~g~-gi~e~~~~l~~ 173 (174)
T cd04153 144 TSIRDHTWHIQGCCALTGE-GLPEGLDWIAS 173 (174)
T ss_pred ccccCCceEEEecccCCCC-CHHHHHHHHhc
Confidence 2345678999999999 99999999974
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=3.3e-17 Score=120.57 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=83.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||+++.++|+....|+..+.+.....+.|+++|+||+|+.. .+..++...+...
T Consensus 70 ~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~ 147 (190)
T cd00879 70 LGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGL 147 (190)
T ss_pred CCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCc
Confidence 6888763 67889999999999999999999998888888887654346799999999999863 4566666665542
Q ss_pred ----------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 ----------------YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ----------------~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
..+.+++|||++|. ||+++|.+|++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~e~~~~l~~~ 189 (190)
T cd00879 148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQ-GYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccccccCceeEEEEEeEecCCC-ChHHHHHHHHhh
Confidence 22468999999999 999999999865
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=4.7e-17 Score=116.33 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=78.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.+... ..++|+++|+||+|+.+.. ..++.....
T Consensus 52 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l 129 (162)
T cd04157 52 MSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLL 129 (162)
T ss_pred CCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHh
Confidence 7899874 889999999999999999999999998889888765421 2579999999999986432 222222211
Q ss_pred h-----hcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 78 V-----KYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 78 ~-----~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
. ...+.++++||++|. |++++|++|.+
T Consensus 130 ~~~~~~~~~~~~~~~Sa~~g~-gv~~~~~~l~~ 161 (162)
T cd04157 130 GLENIKDKPWHIFASNALTGE-GLDEGVQWLQA 161 (162)
T ss_pred CCccccCceEEEEEeeCCCCC-chHHHHHHHhc
Confidence 1 123458999999999 99999999864
No 117
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.72 E-value=6.7e-17 Score=120.51 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=83.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh------------------CCCCCcEEEEEeCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR------------------AVNNVPVMLLANKLD 61 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~piilv~NK~D 61 (173)
|+|+++. ++..||+++|++|+|||+++++||+++..|+.++.... ...++|+||||||+|
T Consensus 61 taG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~D 140 (202)
T cd04102 61 VGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLD 140 (202)
T ss_pred cCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECcc
Confidence 7999884 88999999999999999999999999999999997642 124799999999999
Q ss_pred CCCCccCCHHH----HHHHhhhcCCeEEEEcccCCc---------ccHHHHHHHHHH
Q psy2792 62 LEHLRQVDESL----GRSTAVKYNCTFHEVSVADNS---------PAIYQAFDHLLT 105 (173)
Q Consensus 62 l~~~~~v~~~~----~~~~~~~~~~~~~e~Sak~g~---------~~v~~lf~~l~~ 105 (173)
+.+.+.++.+. ...++.+.+++.++.+++++. ..+...|+.+++
T Consensus 141 l~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 141 QIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred chhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 98767666553 345788899999999888543 134556666654
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.72 E-value=8e-17 Score=113.87 Aligned_cols=101 Identities=29% Similarity=0.406 Sum_probs=89.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...+++++|++|+|||++++++++.+..|+..+.... ...+|+++|+||+|+.....+..++...++..
T Consensus 56 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 134 (159)
T cd00154 56 TAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE 134 (159)
T ss_pred cCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH
Confidence 6777663 77889999999999999999999999999999988865 35799999999999975566778888888888
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLL 104 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~ 104 (173)
.++.++++||+++. |++++|.+|+
T Consensus 135 ~~~~~~~~sa~~~~-~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFFETSAKTGE-NVEELFQSLA 158 (159)
T ss_pred cCCeEEEEecCCCC-CHHHHHHHHh
Confidence 88999999999999 9999999886
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.72 E-value=3.3e-17 Score=117.04 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=78.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS---- 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~---- 75 (173)
|+|+++. ++..|+.++|++|+|||++++.+|..+..|+.++.......++|+++|+||+|+... ...++...
T Consensus 51 ~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~ 128 (160)
T cd04156 51 VGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKL 128 (160)
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCC
Confidence 7888763 778899999999999999999999999988888765432357999999999998632 22233222
Q ss_pred --HhhhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 76 --TAVKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 76 --~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
++...++.+++|||++|. ||+++|++|++
T Consensus 129 ~~~~~~~~~~~~~~Sa~~~~-gv~~~~~~i~~ 159 (160)
T cd04156 129 KKYCSDRDWYVQPCSAVTGE-GLAEAFRKLAS 159 (160)
T ss_pred cccCCCCcEEEEecccccCC-ChHHHHHHHhc
Confidence 222234578999999999 99999999864
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=2.4e-17 Score=117.87 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-HHh-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-STA- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~- 77 (173)
|+|+++. ++..|+.++|++|+|||++++.++.....|+..+.+.....++|+++|+||+|+.+.. ...+.. .+.
T Consensus 50 t~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~ 127 (158)
T cd04151 50 LGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGL 127 (158)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCc
Confidence 7898773 7889999999999999999998888777766555432223579999999999986432 222222 221
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
...++.+++|||++|. ||+++|++|++
T Consensus 128 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~ 157 (158)
T cd04151 128 SELKDRTWSIFKTSAIKGE-GLDEGMDWLVN 157 (158)
T ss_pred cccCCCcEEEEEeeccCCC-CHHHHHHHHhc
Confidence 1223569999999999 99999999975
No 121
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.72 E-value=1.9e-16 Score=118.97 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=90.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|+.++|++|+|||+++..+|..+..|+..+.... .++|+++||||+|+.+ +.+..+. ..++..
T Consensus 65 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~ 140 (215)
T PTZ00132 65 TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKD-RQVKARQ-ITFHRK 140 (215)
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCcc-ccCCHHH-HHHHHH
Confidence 7888773 78889999999999999999999999999999998765 6799999999999864 3344333 356677
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.++.|+++||++|. |++++|.+|++.+...+..
T Consensus 141 ~~~~~~e~Sa~~~~-~v~~~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 141 KNLQYYDISAKSNY-NFEKPFLWLARRLTNDPNL 173 (215)
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHhhcccc
Confidence 78899999999999 9999999999998875543
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=1.1e-16 Score=115.21 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=81.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..++.++|++|+|||.++++++.....|+..+.+.....++|+++|+||+|+... +..++...+...
T Consensus 57 t~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~ 134 (167)
T cd04160 57 LGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQD 134 (167)
T ss_pred CCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhcc
Confidence 7899874 778899999999999999999999999889888776543467999999999998643 334444444332
Q ss_pred -------cCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 80 -------YNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 80 -------~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
.++.++++||++|. |++++|++|++
T Consensus 135 ~~~~~~~~~~~~~~~Sa~~g~-gv~e~~~~l~~ 166 (167)
T cd04160 135 KAEEIGRRDCLVLPVSALEGT-GVREGIEWLVE 166 (167)
T ss_pred ccccccCCceEEEEeeCCCCc-CHHHHHHHHhc
Confidence 24579999999999 99999999975
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=9.7e-17 Score=114.50 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-- 77 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 77 (173)
|+|+++ .++..++.++|++++|||++++++|.....|+..+.......+.|+++|+||+|+.... ..++.....
T Consensus 50 ~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~ 127 (158)
T cd00878 50 VGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGL 127 (158)
T ss_pred CCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhCh
Confidence 788877 38888999999999999999999999999888887765434679999999999987533 223333322
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
....++++++||++|. |++++|++|..
T Consensus 128 ~~~~~~~~~~~~~Sa~~~~-gv~~~~~~l~~ 157 (158)
T cd00878 128 EKILGRRWHIQPCSAVTGD-GLDEGLDWLLQ 157 (158)
T ss_pred hhccCCcEEEEEeeCCCCC-CHHHHHHHHhh
Confidence 2234679999999999 99999999875
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=4.5e-16 Score=114.34 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=81.1
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .++..|+.++|++|+|+|++++++|.....|+.++.+.....++|+++|+||+|+.. .++.++......-
T Consensus 68 ~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l 145 (184)
T smart00178 68 LGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGL 145 (184)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCC
Confidence 788876 378899999999999999999999999988888776543235789999999999863 4555555443211
Q ss_pred ------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 ------------YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ------------~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
..+.+++|||++|. |++++++||...
T Consensus 146 ~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~~~~wl~~~ 183 (184)
T smart00178 146 TNTTGSKGKVGVRPLEVFMCSVVRRM-GYGEGFKWLSQY 183 (184)
T ss_pred CcccccccccCCceeEEEEeecccCC-ChHHHHHHHHhh
Confidence 13458999999999 999999999864
No 125
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.66 E-value=1.1e-15 Score=111.09 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=75.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||+++. ++..|++++|++|+|||+++..++.....|.... . .++|+++|+||+|+.+.. ..+....+++.
T Consensus 74 t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~ 146 (179)
T cd01890 74 TPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--PERVKQQIEDV 146 (179)
T ss_pred CCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--HHHHHHHHHHH
Confidence 8999884 7788999999999999999977777666665332 2 468999999999986422 12233455555
Q ss_pred cCC---eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNC---TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
+++ .++++||++|. ||+++|++|+..+
T Consensus 147 ~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~ 176 (179)
T cd01890 147 LGLDPSEAILVSAKTGL-GVEDLLEAIVERI 176 (179)
T ss_pred hCCCcccEEEeeccCCC-CHHHHHHHHHhhC
Confidence 555 48999999999 9999999998765
No 126
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.65 E-value=7.8e-16 Score=118.00 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=76.3
Q ss_pred cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 87 (173)
+.+.|++++|++++|||++++. ||+.+..|+..+.. .++|++||+||+||.+.+.+..+....+. ..++.++++
T Consensus 29 L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v~~~ 103 (245)
T TIGR00157 29 LTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQVLMT 103 (245)
T ss_pred EECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeEEEE
Confidence 7888999999999999999988 89999999987654 56999999999999765554444455444 478899999
Q ss_pred cccCCcccHHHHHHHHHH
Q psy2792 88 SVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~ 105 (173)
||++|. ||+++|+.+..
T Consensus 104 SAktg~-gi~eLf~~l~~ 120 (245)
T TIGR00157 104 SSKNQD-GLKELIEALQN 120 (245)
T ss_pred ecCCch-hHHHHHhhhcC
Confidence 999999 99999988764
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.65 E-value=1.6e-15 Score=109.25 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=79.1
Q ss_pred CCCCCC------ccHhhhcc---cCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLTE------GTLTAMIC---WADGCIIVYSLIDK-ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e~------~~~~~y~~---~ad~iilv~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|||+.+ .+...|++ .+|++|+|||++++ ++++.+..|++++..... ..++|+++|+||+|+.+...+ .
T Consensus 55 tpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~ 133 (170)
T cd01898 55 IPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-F 133 (170)
T ss_pred cCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-H
Confidence 788743 24555554 59999999999999 799999999998877642 146899999999999654443 3
Q ss_pred HHHHHHhhh-cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 71 SLGRSTAVK-YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 71 ~~~~~~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+....+... .+..++++||+++. |++++|++|++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~i~~~ 169 (170)
T cd01898 134 ELLKELLKELWGKPVFPISALTGE-GLDELLRKLAEL 169 (170)
T ss_pred HHHHHHHhhCCCCCEEEEecCCCC-CHHHHHHHHHhh
Confidence 334444444 36789999999999 999999999864
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=3.4e-15 Score=119.10 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCCCCC------ccHhhh---cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTE------GTLTAM---ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~------~~~~~y---~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|+|+-+ ++...| +..+|++|+|||+++.++++++..|..++..+... .+.|++||+||+|+.+...+..+
T Consensus 213 ~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~ 292 (335)
T PRK12299 213 IPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREK 292 (335)
T ss_pred CCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHH
Confidence 677644 344444 55799999999999988899999999999887521 46899999999999765544444
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
....++...++.++++||+++. ||+++|++|.+.+.+
T Consensus 293 ~~~~~~~~~~~~i~~iSAktg~-GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 293 RAALELAALGGPVFLISAVTGE-GLDELLRALWELLEE 329 (335)
T ss_pred HHHHHHHhcCCCEEEEEcCCCC-CHHHHHHHHHHHHHh
Confidence 4555555666889999999999 999999999988765
No 129
>PLN00023 GTP-binding protein; Provisional
Probab=99.61 E-value=3.6e-15 Score=117.42 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=69.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----------CCCCcEEEEEeCCCCCCCc--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-----------VNNVPVMLLANKLDLEHLR-- 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~NK~Dl~~~~-- 66 (173)
|||++++ ++..||+++|++|+|||+++++||+++..|+.++..... ..++|+||||||+||...+
T Consensus 90 TAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~ 169 (334)
T PLN00023 90 VSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT 169 (334)
T ss_pred CCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc
Confidence 7999884 899999999999999999999999999999999987631 1358999999999996542
Q ss_pred -c---CCHHHHHHHhhhcCC
Q psy2792 67 -Q---VDESLGRSTAVKYNC 82 (173)
Q Consensus 67 -~---v~~~~~~~~~~~~~~ 82 (173)
. +..+++..||+++++
T Consensus 170 r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 170 RGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccHHHHHHHHHHcCC
Confidence 2 357889999998874
No 130
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=1.2e-14 Score=106.01 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=82.2
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh--
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV-- 78 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-- 78 (173)
+|++. .+++.||.++|++|||+|.+|++.+.+....+..+.......++|++|++||+|+.+ .++.++......
T Consensus 66 gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~ 143 (175)
T PF00025_consen 66 GGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLE 143 (175)
T ss_dssp SSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGG
T ss_pred cccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhh
Confidence 46655 489999999999999999999999999888888877754446899999999999864 344555544332
Q ss_pred ----hcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 79 ----KYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 79 ----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
...+.++.|||++|+ |+.+.|+||.+.+
T Consensus 144 ~l~~~~~~~v~~~sa~~g~-Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 144 KLKNKRPWSVFSCSAKTGE-GVDEGLEWLIEQI 175 (175)
T ss_dssp GTTSSSCEEEEEEBTTTTB-THHHHHHHHHHHH
T ss_pred hcccCCceEEEeeeccCCc-CHHHHHHHHHhcC
Confidence 234668999999999 9999999999865
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.60 E-value=7.8e-15 Score=105.53 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=68.4
Q ss_pred cCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792 16 WADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNS 93 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~ 93 (173)
.+|++|+|||+++..++ +....|+..+.... .++|+++|+||+|+.....+.. ...+....++.+++|||++|.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence 36899999999987654 66667888887643 4799999999999975444332 444555556789999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy2792 94 PAIYQAFDHLLTES 107 (173)
Q Consensus 94 ~~v~~lf~~l~~~i 107 (173)
|++++|+++.+.+
T Consensus 155 -gi~~l~~~l~~~~ 167 (168)
T cd01897 155 -GVDEVKNKACELL 167 (168)
T ss_pred -CHHHHHHHHHHHh
Confidence 9999999999876
No 132
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.59 E-value=6.8e-15 Score=104.04 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST--- 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~--- 76 (173)
|+|+++. ++..|+.++|++++|||+++..+|.....|+..+.......++|+++|+||+|+.+... ..+....
T Consensus 51 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~ 128 (159)
T cd04159 51 LGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNL 128 (159)
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCc
Confidence 6788764 77889999999999999999999998888887776543235789999999999865432 2222111
Q ss_pred --hhhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
.....+.++++||++|. |++++|++|.+
T Consensus 129 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~ 158 (159)
T cd04159 129 KSITDREVSCYSISCKEKT-NIDIVLDWLIK 158 (159)
T ss_pred ccccCCceEEEEEEeccCC-ChHHHHHHHhh
Confidence 11234678999999999 99999999875
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.58 E-value=3.7e-15 Score=104.62 Aligned_cols=82 Identities=24% Similarity=0.158 Sum_probs=65.3
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEEcccC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEVSVAD 91 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~ 91 (173)
+++++|++|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ +.+..+++..+++..+. .++++||++
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 5789999999999999998865 3454321 249999999999864 34456667777777775 799999999
Q ss_pred CcccHHHHHHHHH
Q psy2792 92 NSPAIYQAFDHLL 104 (173)
Q Consensus 92 g~~~v~~lf~~l~ 104 (173)
|. |++++|.+|+
T Consensus 130 ~~-gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQ-GLEALVDYLN 141 (142)
T ss_pred CC-CHHHHHHHHh
Confidence 99 9999999875
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.58 E-value=1.2e-14 Score=105.15 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=74.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. .+..+++++|++++|||+++..+|.....|+..+.......++|+++|+||+|+..... .++.......
T Consensus 65 ~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~ 142 (173)
T cd04155 65 IGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNL 142 (173)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCC
Confidence 6777653 67788999999999999999999998888877766543235799999999999864321 2222221111
Q ss_pred c-----CCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 80 Y-----NCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 80 ~-----~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
. .+.++++||++|. |++++|+||++
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l~~ 172 (173)
T cd04155 143 HDLRDRTWHIQACSAKTGE-GLQEGMNWVCK 172 (173)
T ss_pred cccCCCeEEEEEeECCCCC-CHHHHHHHHhc
Confidence 1 1247899999999 99999999975
No 135
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.52 E-value=1.1e-13 Score=110.23 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=80.6
Q ss_pred CCCCCC------ccHhhhcc---cCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccC
Q psy2792 2 TIGLTE------GTLTAMIC---WADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQV 68 (173)
Q Consensus 2 TaG~e~------~~~~~y~~---~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v 68 (173)
|||+.+ ++...|++ .+|++|+|+|+++. ++++.+..|..++..+.. ..+.|++||+||+|+.....
T Consensus 212 ~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~- 290 (329)
T TIGR02729 212 IPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE- 290 (329)
T ss_pred CCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-
Confidence 678754 35555655 69999999999987 688888889888877642 14689999999999975432
Q ss_pred CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 69 DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 69 ~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
..+....+++..+..++++||+++. ||+++|.+|.+.+
T Consensus 291 ~~~~~~~l~~~~~~~vi~iSAktg~-GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 LAELLKELKKALGKPVFPISALTGE-GLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHcCCcEEEEEccCCc-CHHHHHHHHHHHh
Confidence 2334455666667889999999999 9999999998754
No 136
>KOG0096|consensus
Probab=99.51 E-value=1.2e-14 Score=104.71 Aligned_cols=107 Identities=24% Similarity=0.347 Sum_probs=91.0
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||||. ++..-||-++.++|++||++..-++.++..|...+.+.+ .++||+++|||.|... +.+ ......+-..
T Consensus 66 tagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rk 141 (216)
T KOG0096|consen 66 TAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKA-RKV-KAKPVSFHRK 141 (216)
T ss_pred cccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccc-ccc-ccccceeeec
Confidence 899998 489999999999999999999999999999999999988 6799999999999864 332 1223334556
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.++.||++||+.+. |.+..|.|+++.+.-.+..
T Consensus 142 knl~y~~iSaksn~-NfekPFl~LarKl~G~p~L 174 (216)
T KOG0096|consen 142 KNLQYYEISAKSNY-NFERPFLWLARKLTGDPSL 174 (216)
T ss_pred ccceeEEeeccccc-ccccchHHHhhhhcCCCCe
Confidence 67899999999999 9999999999998876554
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.50 E-value=1.4e-13 Score=102.36 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=69.3
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNS 93 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~ 93 (173)
+.++|++++|+|++++.++.....|...+.... ..++|+++|+||+|+.....+ ..++...+..++++||+++.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELG-AEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 678999999999999988888877877776544 356899999999998653321 13344456789999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy2792 94 PAIYQAFDHLLTES 107 (173)
Q Consensus 94 ~~v~~lf~~l~~~i 107 (173)
|++++|++|...+
T Consensus 192 -gi~~l~~~L~~~~ 204 (204)
T cd01878 192 -GLDELLEAIEELL 204 (204)
T ss_pred -CHHHHHHHHHhhC
Confidence 9999999998653
No 138
>KOG0073|consensus
Probab=99.49 E-value=5.6e-13 Score=94.11 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=82.7
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH------HH
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL------GR 74 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~------~~ 74 (173)
.||-. ..|++||..+|++|+|||.+|+..|++....+..+.....-...|++|++||.|+.. .++.++ ..
T Consensus 68 GGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~ 145 (185)
T KOG0073|consen 68 GGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLE 145 (185)
T ss_pred CCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHH
Confidence 35554 489999999999999999999999998877776665533335689999999999973 233332 23
Q ss_pred HHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 75 ~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++...+..+-|||.+|+ ++.+.|.||+..+.+
T Consensus 146 ~l~ks~~~~l~~cs~~tge-~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 146 ELAKSHHWRLVKCSAVTGE-DLLEGIDWLCDDLMS 179 (185)
T ss_pred HhccccCceEEEEeccccc-cHHHHHHHHHHHHHH
Confidence 4556677899999999999 999999999998876
No 139
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=1.7e-13 Score=98.93 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=71.9
Q ss_pred hhcccCcEEEEEEeCCCh------hhHHHHHHHHHHHHhhhCC------CCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 12 AMICWADGCIIVYSLIDK------ESFDYAVSTLQNLQRHRAV------NNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
.+++++|++++|+|.++. .+++....|..++...... .+.|+++|+||+|+.....+...........
T Consensus 70 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 149 (176)
T cd01881 70 AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE 149 (176)
T ss_pred HHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC
Confidence 457889999999999998 5788888888887754311 3689999999999975444333222334444
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.+..++++||+++. |++++++++...
T Consensus 150 ~~~~~~~~Sa~~~~-gl~~l~~~l~~~ 175 (176)
T cd01881 150 EGAEVVPISAKTEE-GLDELIRAIYEL 175 (176)
T ss_pred CCCCEEEEehhhhc-CHHHHHHHHHhh
Confidence 56779999999999 999999998764
No 140
>KOG4423|consensus
Probab=99.47 E-value=7.1e-14 Score=100.63 Aligned_cols=109 Identities=21% Similarity=0.176 Sum_probs=90.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---CCCCCcEEEEEeCCCCCCCccCC-HHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR---AVNNVPVMLLANKLDLEHLRQVD-ESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~-~~~~~~ 75 (173)
-|||+++ ++..||+.+++..+|||++...+|+....|..++..-. ....+|+|+.+||||........ ......
T Consensus 82 IagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~ 161 (229)
T KOG4423|consen 82 IAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDN 161 (229)
T ss_pred chhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHH
Confidence 3799984 99999999999999999999999999999998876432 23568899999999986433222 355677
Q ss_pred HhhhcCCe-EEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 76 TAVKYNCT-FHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 76 ~~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+++++|+. ++|+|+|.+. |+.|+-..|++.+.-+.
T Consensus 162 f~kengf~gwtets~Kenk-ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 162 FKKENGFEGWTETSAKENK-NIPEAQRELVEKILVND 197 (229)
T ss_pred HHhccCccceeeecccccc-ChhHHHHHHHHHHHhhc
Confidence 88888866 8999999999 99999999999887643
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.47 E-value=3.2e-13 Score=96.41 Aligned_cols=96 Identities=15% Similarity=-0.003 Sum_probs=65.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGR 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~ 74 (173)
|||+++. ....++.++|++|+|||+++ +++++.+. .+... ...|+++|+||+|+.+... ...++..
T Consensus 58 tpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~ 130 (164)
T cd04171 58 VPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL---GIKRGLVVLTKADLVDEDWLELVEEEIR 130 (164)
T ss_pred CCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh---CCCcEEEEEECccccCHHHHHHHHHHHH
Confidence 8999874 45567889999999999987 44444332 22221 2248999999999964321 1122333
Q ss_pred HHhhh---cCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 75 STAVK---YNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 75 ~~~~~---~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
..... .+..++++||+++. |++++|+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~ 163 (164)
T cd04171 131 ELLAGTFLADAPIFPVSAVTGE-GIEELKEYLDE 163 (164)
T ss_pred HHHHhcCcCCCcEEEEeCCCCc-CHHHHHHHHhh
Confidence 33333 35789999999999 99999998764
No 142
>KOG0070|consensus
Probab=99.47 E-value=5.9e-13 Score=95.81 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=83.7
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-----
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----- 75 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----- 75 (173)
.||+. .++++||.+++++|||+|.+|++.+.+....+..+....+..++|+++.+||.|++..- +..+...
T Consensus 69 GGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~ 146 (181)
T KOG0070|consen 69 GGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLH 146 (181)
T ss_pred CCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhh
Confidence 57876 49999999999999999999999999998888888777645689999999999997533 3333322
Q ss_pred HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
-.....+.+..|+|.+|+ |+.+.++||...+..
T Consensus 147 ~l~~~~w~iq~~~a~~G~-GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 147 SLRSRNWHIQSTCAISGE-GLYEGLDWLSNNLKK 179 (181)
T ss_pred ccCCCCcEEeeccccccc-cHHHHHHHHHHHHhc
Confidence 222344667899999999 999999999988754
No 143
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.46 E-value=3.9e-13 Score=104.50 Aligned_cols=112 Identities=19% Similarity=0.061 Sum_probs=81.1
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+.+. ....++.++|++++|+|+++..+++ ..++..+.. .+.|+++|+||+|+.+...+ ..
T Consensus 55 TPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~ 127 (270)
T TIGR00436 55 TPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LP 127 (270)
T ss_pred CcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HH
Confidence 8888652 1345789999999999999876664 334444443 35899999999998642221 22
Q ss_pred HHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCCCCCccccccc
Q psy2792 72 LGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKF 121 (173)
Q Consensus 72 ~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~ 121 (173)
....++...+. .++++||++|. |++++++.|.+.+.+.+..+++.....
T Consensus 128 ~~~~~~~~~~~~~v~~iSA~~g~-gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 128 LIDKYAILEDFKDIVPISALTGD-NTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHHhhcCCCceEEEecCCCC-CHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 33344444444 68999999999 999999999999999888777665443
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.46 E-value=7.6e-13 Score=93.95 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=73.2
Q ss_pred CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. +...|+. ++|++|+|+|.+++++. ..|...+.. .++|+++|+||+|+.+...+..+
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~ 122 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKID 122 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhh
Confidence 8898762 4567775 99999999999886543 344444443 35899999999999765444333
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
...++..+++.++++||+++. |+.++|++|...
T Consensus 123 -~~~~~~~~~~~~~~iSa~~~~-~~~~l~~~l~~~ 155 (158)
T cd01879 123 -LDKLSELLGVPVVPTSARKGE-GIDELKDAIAEL 155 (158)
T ss_pred -HHHHHHhhCCCeEEEEccCCC-CHHHHHHHHHHH
Confidence 456667778899999999999 999999999875
No 145
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.46 E-value=5.4e-13 Score=95.82 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=72.8
Q ss_pred CCCCCCc------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH
Q psy2792 2 TIGLTEG------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75 (173)
Q Consensus 2 TaG~e~~------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 75 (173)
|||+... -...++.++|++|+|||+++.+++. ..|+..+ . .+.|+++|+||+|+.+ ...+....
T Consensus 44 tpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~--~~~~ii~v~nK~Dl~~---~~~~~~~~ 113 (158)
T PRK15467 44 TPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRL--PAGLLDI---G--VSKRQIAVISKTDMPD---ADVAATRK 113 (158)
T ss_pred CCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccccc--CHHHHhc---c--CCCCeEEEEEccccCc---ccHHHHHH
Confidence 7887431 1123478999999999999887763 3455443 1 3578999999999854 23556667
Q ss_pred HhhhcCC--eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 TAVKYNC--TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~~~~~--~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++.+.++ +++++||++|. ||+++|..+.+.+.+
T Consensus 114 ~~~~~~~~~p~~~~Sa~~g~-gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 114 LLLETGFEEPIFELNSHDPQ-SVQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHcCCCCCEEEEECCCcc-CHHHHHHHHHHhchh
Confidence 7777774 79999999999 999999999887654
No 146
>PRK15494 era GTPase Era; Provisional
Probab=99.46 E-value=4.4e-13 Score=107.37 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCCCCCc---cHh-------hhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLTEG---TLT-------AMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e~~---~~~-------~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|||+.+. +.. .++.+||++|+|+|.++ +|..... |+..+... +.|.++|+||+|+.+. ..
T Consensus 107 TpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~---~~ 177 (339)
T PRK15494 107 TPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIESK---YL 177 (339)
T ss_pred CCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc---cH
Confidence 8998541 221 34789999999999765 4655544 55555442 4677899999998642 23
Q ss_pred HHHHHHhhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcccccccchhc
Q psy2792 71 SLGRSTAVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTK 125 (173)
Q Consensus 71 ~~~~~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~ 125 (173)
.+...++...+ ..+|++||++|. |++++|++|+..+.++++.+++...+..+.+
T Consensus 178 ~~~~~~l~~~~~~~~i~~iSAktg~-gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~ 233 (339)
T PRK15494 178 NDIKAFLTENHPDSLLFPISALSGK-NIDGLLEYITSKAKISPWLYAEDDITDLPMR 233 (339)
T ss_pred HHHHHHHHhcCCCcEEEEEeccCcc-CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 44555554443 579999999999 9999999999999999999987765554443
No 147
>KOG0075|consensus
Probab=99.45 E-value=1.8e-13 Score=95.10 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH----
Q psy2792 3 IGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST---- 76 (173)
Q Consensus 3 aG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~---- 76 (173)
+||.++ +++.|+++++++++|+|.+|++.++.....+..+.....-..+|++++|||.|++. ..+......-
T Consensus 73 gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~ 150 (186)
T KOG0075|consen 73 GGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLS 150 (186)
T ss_pred CCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCcc
Confidence 688875 99999999999999999999988887777776666554347899999999999874 2333222211
Q ss_pred -hhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 77 -AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 77 -~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.....+.+|.+|+++.. |++.+.+||++...
T Consensus 151 sitdREvcC~siScke~~-Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 151 SITDREVCCFSISCKEKV-NIDITLDWLIEHSK 182 (186)
T ss_pred ccccceEEEEEEEEcCCc-cHHHHHHHHHHHhh
Confidence 12223568999999999 99999999997643
No 148
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.45 E-value=8.2e-13 Score=99.10 Aligned_cols=108 Identities=25% Similarity=0.244 Sum_probs=83.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID-KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR------------ 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------ 66 (173)
||||++. +++.|+.+++++++|||.++ ..+++....|+..+.... ....|+++|+||+|+....
T Consensus 61 t~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (219)
T COG1100 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNR 139 (219)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhc
Confidence 8999984 99999999999999999999 445666678999988876 2469999999999997653
Q ss_pred cCCHHHHHHHhhh---cCCeEEEEccc--CCcccHHHHHHHHHHHHhcCC
Q psy2792 67 QVDESLGRSTAVK---YNCTFHEVSVA--DNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 67 ~v~~~~~~~~~~~---~~~~~~e~Sak--~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.+........+.. ....++++|++ ++. +|.++|..+...+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 140 EVVLLVLAPKAVLPEVANPALLETSAKSLTGP-NVNELFKELLRKLLEEI 188 (219)
T ss_pred CcchhhhHhHHhhhhhcccceeEeecccCCCc-CHHHHHHHHHHHHHHhh
Confidence 2222222222222 23348999999 999 99999999999887543
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.45 E-value=1.4e-12 Score=90.51 Aligned_cols=102 Identities=27% Similarity=0.378 Sum_probs=76.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH-HHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL-GRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~-~~~~~~ 78 (173)
|+|++.. ....++..+|++++|||++++.+++....|............+|+++|+||+|+.......... ......
T Consensus 52 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~ 131 (157)
T cd00882 52 TAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK 131 (157)
T ss_pred cCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh
Confidence 5677653 5577899999999999999999999888873333322224689999999999986543332222 334455
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHH
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLL 104 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~ 104 (173)
..+..++++|++.+. |+++++++|.
T Consensus 132 ~~~~~~~~~s~~~~~-~i~~~~~~l~ 156 (157)
T cd00882 132 ELGVPYFETSAKTGE-NVEELFEELA 156 (157)
T ss_pred hcCCcEEEEecCCCC-ChHHHHHHHh
Confidence 556889999999999 9999999886
No 150
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.41 E-value=3.4e-12 Score=104.60 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=81.7
Q ss_pred CCCCCC------ccHhhhcc---cCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccC
Q psy2792 2 TIGLTE------GTLTAMIC---WADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQV 68 (173)
Q Consensus 2 TaG~e~------~~~~~y~~---~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v 68 (173)
|||+.+ ++...|++ .+|++|+|+|+++. ++++++..|..++..+.. ..+.|++||+||+||..
T Consensus 213 ~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~---- 288 (424)
T PRK12297 213 IPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE---- 288 (424)
T ss_pred CCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----
Confidence 677643 35566654 59999999999865 678888889888887642 14689999999999843
Q ss_pred CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 69 DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 69 ~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
..+....+++.++..++++||+++. |+++++++|.+.+.+.+.
T Consensus 289 ~~e~l~~l~~~l~~~i~~iSA~tge-GI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 289 AEENLEEFKEKLGPKVFPISALTGQ-GLDELLYAVAELLEETPE 331 (424)
T ss_pred CHHHHHHHHHHhCCcEEEEeCCCCC-CHHHHHHHHHHHHHhCcc
Confidence 1344555666666789999999999 999999999988876543
No 151
>KOG0076|consensus
Probab=99.40 E-value=5.1e-13 Score=95.17 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=84.2
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---h
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST---A 77 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~---~ 77 (173)
.||+. +++..||..|+++|+++|.+|++.|+.....++.+..+....++|+++.+||.|+.+.-+ ..+.... +
T Consensus 77 gGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~ 154 (197)
T KOG0076|consen 77 GGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLA 154 (197)
T ss_pred CChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhh
Confidence 46665 599999999999999999999999999988887777665557899999999999975433 2232222 2
Q ss_pred hh---cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 78 VK---YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 78 ~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+. ..+.+..|||.+|+ ||++..+|++..+..+
T Consensus 155 e~~~~rd~~~~pvSal~ge-gv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 155 ELIPRRDNPFQPVSALTGE-GVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcCCccCccccchhhhcc-cHHHHHHHHHHHHhhc
Confidence 22 23668999999999 9999999999988775
No 152
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.38 E-value=3.2e-12 Score=102.76 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=65.7
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN 92 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 92 (173)
++.+||++|+|||++++.+++++..|...+.... ..++|+++|+||+|+..... ...+. .....++++||++|
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg 337 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELG-AEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTG 337 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-cCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCC
Confidence 5889999999999999988888877766665543 34789999999999864222 11111 12245899999999
Q ss_pred cccHHHHHHHHHHH
Q psy2792 93 SPAIYQAFDHLLTE 106 (173)
Q Consensus 93 ~~~v~~lf~~l~~~ 106 (173)
. |+++++++|.+.
T Consensus 338 ~-GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 E-GLDLLLEAIAER 350 (351)
T ss_pred C-CHHHHHHHHHhh
Confidence 9 999999998764
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.38 E-value=2.6e-12 Score=106.08 Aligned_cols=94 Identities=21% Similarity=0.130 Sum_probs=73.7
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. ....|++++|++|+|||++++.+++.. |+..+.. .++|+++|+||+|+...
T Consensus 258 TaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~------ 325 (442)
T TIGR00450 258 TAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN------ 325 (442)
T ss_pred CCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc------
Confidence 8999652 235689999999999999998888765 7766643 46899999999998642
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
....++..++..++++||++ . ||+++|+.|.+.+.+
T Consensus 326 ~~~~~~~~~~~~~~~vSak~-~-gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 326 SLEFFVSSKVLNSSNLSAKQ-L-KIKALVDLLTQKINA 361 (442)
T ss_pred chhhhhhhcCCceEEEEEec-C-CHHHHHHHHHHHHHH
Confidence 12344566677899999998 6 899999999987765
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.38 E-value=2.8e-12 Score=94.87 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=62.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHh-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTA- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~- 77 (173)
|||++++ ....|++++|++|+|||+++. .+.....|+..+.. .++|+++|+||+|+...+.. ..++...+.
T Consensus 72 tpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 146 (194)
T cd01891 72 TPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFI 146 (194)
T ss_pred CCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 8999884 778899999999999999873 23333444444433 46899999999999643221 123333333
Q ss_pred ------hhcCCeEEEEcccCCcccHH
Q psy2792 78 ------VKYNCTFHEVSVADNSPAIY 97 (173)
Q Consensus 78 ------~~~~~~~~e~Sak~g~~~v~ 97 (173)
...++.++++||++|. |+.
T Consensus 147 ~~~~~~~~~~~~iv~~Sa~~g~-~~~ 171 (194)
T cd01891 147 ELGATEEQLDFPVLYASAKNGW-ASL 171 (194)
T ss_pred HhCCccccCccCEEEeehhccc-ccc
Confidence 2236789999999997 663
No 155
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.37 E-value=2.9e-12 Score=109.29 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=76.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||++++ ....+++.||++|+|||+++..+++....|...+. .++|+++|+||+|+.+.. ..+...++...
T Consensus 77 TPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~ 149 (595)
T TIGR01393 77 TPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEV 149 (595)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHH
Confidence 8999885 67789999999999999998766666666654332 358999999999986422 12233445555
Q ss_pred cCC---eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNC---TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++ .++++||++|. ||+++|++|++.+..
T Consensus 150 lg~~~~~vi~vSAktG~-GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 150 IGLDASEAILASAKTGI-GIEEILEAIVKRVPP 181 (595)
T ss_pred hCCCcceEEEeeccCCC-CHHHHHHHHHHhCCC
Confidence 554 48999999999 999999999988764
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.35 E-value=6.3e-12 Score=88.93 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=66.0
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|+|.++. ....+++++|++++|+|..+..+.... .+...+.. .+.|+++|+||+|+.+....
T Consensus 52 tpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~--- 123 (157)
T cd01894 52 TGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE--- 123 (157)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH---
Confidence 7888763 123568899999999999876444332 12222222 35899999999998653221
Q ss_pred HHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 72 LGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 72 ~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.......+. .++++||+++. |++++|++|++.+
T Consensus 124 --~~~~~~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~~ 157 (157)
T cd01894 124 --AAEFYSLGFGEPIPISAEHGR-GIGDLLDAILELL 157 (157)
T ss_pred --HHHHHhcCCCCeEEEecccCC-CHHHHHHHHHhhC
Confidence 222334555 68999999999 9999999998753
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.35 E-value=4e-12 Score=105.34 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=71.6
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. ....++.++|++|+|||++++.++++...|.. . .+.|+++|+||+|+.....+.
T Consensus 270 T~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~--~~~piiiV~NK~DL~~~~~~~-- 340 (449)
T PRK05291 270 TAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----L--KDKPVIVVLNKADLTGEIDLE-- 340 (449)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----c--CCCCcEEEEEhhhccccchhh--
Confidence 8998762 13457999999999999999888876655543 2 568999999999996533221
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...+..++++||++|. |+++++++|.+.+..
T Consensus 341 ------~~~~~~~i~iSAktg~-GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 ------EENGKPVIRISAKTGE-GIDELREAIKELAFG 371 (449)
T ss_pred ------hccCCceEEEEeeCCC-CHHHHHHHHHHHHhh
Confidence 2345679999999999 999999999988754
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=3.5e-12 Score=106.34 Aligned_cols=92 Identities=17% Similarity=0.013 Sum_probs=66.3
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHH-HHhhhcCCeEEEEc
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGR-STAVKYNCTFHEVS 88 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~-~~~~~~~~~~~e~S 88 (173)
.++++||++|+|||+++..++.++. |+..+.. .++|+|||+||+|+.+.... ...+.. .+.....++++++|
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 4688999999999999988887764 4444443 46899999999999642110 011111 22222346789999
Q ss_pred ccCCcccHHHHHHHHHHHHhc
Q psy2792 89 VADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i~~ 109 (173)
|++|. ||+++|+.+...+..
T Consensus 364 Ak~g~-gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 364 AKTGR-AVDKLVPALETALES 383 (472)
T ss_pred CCCCC-CHHHHHHHHHHHHHH
Confidence 99999 999999999887654
No 159
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.33 E-value=8.8e-12 Score=89.39 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=66.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~ 75 (173)
|+|++.. ++..++..+|++++|+|+++. ++++.+ ..+.. .++|+++|+||+|+....... ......
T Consensus 57 tpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~----~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 128 (168)
T cd01887 57 TPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAI----KLAKA----ANVPFIVALNKIDKPNANPERVKNELSE 128 (168)
T ss_pred CCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHH----HHHHH----cCCCEEEEEEceecccccHHHHHHHHHH
Confidence 7898763 677889999999999999884 333322 22222 458999999999986422100 011111
Q ss_pred Hhh----h--cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 76 TAV----K--YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 76 ~~~----~--~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+.. . ..+.++++||++|. |++++|++|.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 166 (168)
T cd01887 129 LGLQGEDEWGGDVQIVPTSAKTGE-GIDDLLEAILLLAE 166 (168)
T ss_pred hhccccccccCcCcEEEeecccCC-CHHHHHHHHHHhhh
Confidence 111 1 13579999999999 99999999987543
No 160
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.33 E-value=1.4e-11 Score=86.47 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=77.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDK-ESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|+++. ++..++++++++++++|+... .++.... .|...+..... .+.|+++|+||+|+.... +.......+.
T Consensus 57 ~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~~~~~~~~~~ 134 (161)
T TIGR00231 57 TAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK-LKTHVAFLFA 134 (161)
T ss_pred CCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch-hhHHHHHHHh
Confidence 6787763 778889999999999999887 7777765 68777777652 279999999999996533 3333444444
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHH
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHL 103 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l 103 (173)
......++++||++|. |+.++|++|
T Consensus 135 ~~~~~~~~~~sa~~~~-gv~~~~~~l 159 (161)
T TIGR00231 135 KLNGEPIIPLSAETGK-NIDSAFKIV 159 (161)
T ss_pred hccCCceEEeecCCCC-CHHHHHHHh
Confidence 4445679999999999 999999886
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.33 E-value=4.9e-12 Score=94.38 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~ 73 (173)
|+|+++. -....+.++|++|+|+|++++ ++++.+..| ... ...|++||+||+|+.+.... ..++.
T Consensus 90 tPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (203)
T cd01888 90 CPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM---GLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred CCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc---CCCcEEEEEEchhccCHHHHHHHHHHH
Confidence 7787653 233346678999999999873 334433322 221 22479999999998642211 11223
Q ss_pred HHHhhhc---CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 74 RSTAVKY---NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 74 ~~~~~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++... ++.++++||++|. |++++|++|.+.+.+
T Consensus 163 ~~~~~~~~~~~~~i~~vSA~~g~-gi~~L~~~l~~~l~~ 200 (203)
T cd01888 163 KKFVKGTIAENAPIIPISAQLKY-NIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHhccccCCCcEEEEeCCCCC-CHHHHHHHHHHhCCC
Confidence 3333332 5679999999999 999999999987765
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.33 E-value=1.5e-11 Score=101.12 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCCCCCc----cH------hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----TL------TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----~~------~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+.+. +. ..++++||++|+|+|++++.+++.+..|...+.... ..++|+++|+||+|+..... .
T Consensus 252 TaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-~~~~pvIiV~NKiDL~~~~~---~ 327 (426)
T PRK11058 252 TVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID-AHEIPTLLVMNKIDMLDDFE---P 327 (426)
T ss_pred cCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccCCCchh---H
Confidence 8898441 22 234789999999999999988888766555454433 25789999999999864211 1
Q ss_pred HHHHHhhhcCCe-EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 72 LGRSTAVKYNCT-FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 ~~~~~~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
... ....+.. ++++||++|. |++++|++|...+..
T Consensus 328 ~~~--~~~~~~~~~v~ISAktG~-GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 328 RID--RDEENKPIRVWLSAQTGA-GIPLLFQALTERLSG 363 (426)
T ss_pred HHH--HHhcCCCceEEEeCCCCC-CHHHHHHHHHHHhhh
Confidence 111 1123444 5889999999 999999999998854
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.31 E-value=1.2e-11 Score=103.14 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=69.8
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|+|++.. ....|+++||++|+|||+++..++.. ..|...+.. .++|+++|+||+|+.... .+
T Consensus 93 T~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~---~~ 164 (472)
T PRK03003 93 TGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE---AD 164 (472)
T ss_pred CCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc---hh
Confidence 7898741 34568999999999999998766543 334444443 468999999999985321 22
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
....+....+ .+++|||++|. |++++|++|+..+.+
T Consensus 165 ~~~~~~~g~~-~~~~iSA~~g~-gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 165 AAALWSLGLG-EPHPVSALHGR-GVGDLLDAVLAALPE 200 (472)
T ss_pred hHHHHhcCCC-CeEEEEcCCCC-CcHHHHHHHHhhccc
Confidence 2222222222 35799999999 999999999998865
No 164
>KOG0071|consensus
Probab=99.31 E-value=5.5e-12 Score=87.11 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=84.6
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh--
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV-- 78 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-- 78 (173)
.||++ .++++||.++.++|||.|..+.+..++....+..+.......++|++|.+||.|++... +.+++..+.+
T Consensus 69 GGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe 146 (180)
T KOG0071|consen 69 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELE 146 (180)
T ss_pred cCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccc
Confidence 57766 49999999999999999999998899888888888877766889999999999998543 4556555432
Q ss_pred ---hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 79 ---KYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 79 ---~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
...+.+..+||.+|+ ++.+-|.||...+.
T Consensus 147 ~~r~~~W~vqp~~a~~gd-gL~eglswlsnn~~ 178 (180)
T KOG0071|consen 147 RIRDRNWYVQPSCALSGD-GLKEGLSWLSNNLK 178 (180)
T ss_pred cccCCccEeeccccccch-hHHHHHHHHHhhcc
Confidence 334667899999999 99999999987654
No 165
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.31 E-value=1.5e-11 Score=100.16 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=82.1
Q ss_pred hcccCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeEEE
Q psy2792 13 MICWADGCIIVYSLI---DKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTFHE 86 (173)
Q Consensus 13 y~~~ad~iilv~d~~---~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e 86 (173)
++..+|++++|+|++ +.+.++++..|+.++..+.. ..+.|+|||+||+|+.....+ .+....+.+..+ ..++.
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYL 312 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEE
Confidence 578899999999998 45678888888888877541 136899999999998653332 233344444444 36899
Q ss_pred EcccCCcccHHHHHHHHHHHHhcCCCCCcccccccch
Q psy2792 87 VSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSV 123 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 123 (173)
+||+++. ||++++++|.+.+.+.+..+++...+...
T Consensus 313 ISA~tg~-GIdeLl~~I~~~L~~~~~~~~~~~~td~~ 348 (390)
T PRK12298 313 ISAASGL-GVKELCWDLMTFIEENPREEAEEAEAPEK 348 (390)
T ss_pred EECCCCc-CHHHHHHHHHHHhhhCcccCCcccccCcc
Confidence 9999999 99999999999998888877766544433
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.29 E-value=2.6e-11 Score=88.35 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=71.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~ 77 (173)
|+|+.+. .+..++.++|++++|+|.++..+... ..++..+.. .+.|+++|+||+|+....... .++.....
T Consensus 69 tpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 69 TPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred CCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 7888763 77788999999999999987654432 234443333 468999999999986422211 12233333
Q ss_pred hh--------------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 78 VK--------------YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 78 ~~--------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.. ....++++||++|. |++++|.+|...+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~-gi~~l~~~l~~~l~ 187 (189)
T cd00881 144 GLIGFISTKEEGTRNGLLVPIVPGSALTGI-GVEELLEAIVEHLP 187 (189)
T ss_pred ccccccchhhhhcccCCcceEEEEecccCc-CHHHHHHHHHhhCC
Confidence 22 34678999999999 99999999998763
No 167
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.28 E-value=2.7e-11 Score=85.55 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=68.8
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|+|..+. ....++.++|++++|+|++++.+......|.. ..+.|+++|+||+|+.+....
T Consensus 56 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~--- 125 (157)
T cd04164 56 TAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL--- 125 (157)
T ss_pred CCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc---
Confidence 6787652 23356789999999999998877766554432 156899999999998653332
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.....+..++++||+++. |+++++.+|...+
T Consensus 126 ----~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~~~ 156 (157)
T cd04164 126 ----LSLLAGKPIIAISAKTGE-GLDELKEALLELA 156 (157)
T ss_pred ----ccccCCCceEEEECCCCC-CHHHHHHHHHHhh
Confidence 233445779999999999 9999999988754
No 168
>PRK00089 era GTPase Era; Reviewed
Probab=99.28 E-value=3.3e-11 Score=94.56 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=72.4
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEcc
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVSV 89 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 89 (173)
..++.++|++++|+|+++. +.....++..... ..+.|+++|+||+|+.............+....+ ..++++||
T Consensus 79 ~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred HHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence 3467899999999999883 2222233322222 1358999999999996332222333444544444 56899999
Q ss_pred cCCcccHHHHHHHHHHHHhcCCCCCcccccc
Q psy2792 90 ADNSPAIYQAFDHLLTESRGGPPSGIHKIRK 120 (173)
Q Consensus 90 k~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~ 120 (173)
+++. |+++++++|.+.+.+.+..+++...+
T Consensus 154 ~~~~-gv~~L~~~L~~~l~~~~~~y~~~~~t 183 (292)
T PRK00089 154 LKGD-NVDELLDVIAKYLPEGPPYYPEDQIT 183 (292)
T ss_pred CCCC-CHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 9999 99999999999999888777665433
No 169
>PRK04213 GTP-binding protein; Provisional
Probab=99.27 E-value=4.6e-12 Score=93.97 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=43.0
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC---------eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC---------TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~---------~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++|+++|+||+|+.+.. .+....++..+++ .++++||++| ||+++|++|++.+.+
T Consensus 129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g--gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG--GIEELKEAIRKRLHE 193 (201)
T ss_pred cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC--CHHHHHHHHHHhhcC
Confidence 469999999999986433 3344555555554 4799999999 899999999987654
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.26 E-value=3.9e-11 Score=98.87 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=64.2
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-HHhhh----cCCeEE
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-STAVK----YNCTFH 85 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~ 85 (173)
..+++.||++|+|+|+++..+..+.. ++..+.. .++|+|+|+||+|+.+... ..++.. .+... .+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceE
Confidence 34789999999999999876665543 3333333 4589999999999962111 111111 11111 246799
Q ss_pred EEcccCCcccHHHHHHHHHHHHhc
Q psy2792 86 EVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++||++|. |++++|+++.+....
T Consensus 323 ~~SA~~g~-~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 323 FISALTGQ-GVDKLLDAIDEVYEN 345 (429)
T ss_pred EEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999 999999999886654
No 171
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.26 E-value=3.1e-11 Score=89.03 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=64.4
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh-----hhcCC-
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-----VKYNC- 82 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~- 82 (173)
+...|++++|++|+|+|++++.. .|...+.... .+.|+++|+||+|+.... ...+....+. ...+.
T Consensus 27 ~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~--~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 27 LLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG--GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc--CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCCC
Confidence 56778999999999999988541 2333332222 468999999999986432 2333333333 22332
Q ss_pred --eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 83 --TFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 83 --~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.++.+||++|. |+++++..|.+.+.
T Consensus 99 ~~~i~~vSA~~~~-gi~eL~~~l~~~l~ 125 (190)
T cd01855 99 PKDVILISAKKGW-GVEELINAIKKLAK 125 (190)
T ss_pred cccEEEEECCCCC-CHHHHHHHHHHHhh
Confidence 58999999999 99999999998774
No 172
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.25 E-value=4.5e-11 Score=102.12 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=74.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||++++ .+..+++.+|++|+|+|+++.........|.... . .++|+++|+||+|+.... ......++...
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~ 153 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD--PERVKQEIEDV 153 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc--HHHHHHHHHHH
Confidence 8999885 6778999999999999999865555555554332 2 468999999999986422 12223344444
Q ss_pred cCC---eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNC---TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++ .++++||++|. ||++++++|+..+..
T Consensus 154 lg~~~~~vi~iSAktG~-GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 154 IGIDASDAVLVSAKTGI-GIEEVLEAIVERIPP 185 (600)
T ss_pred hCCCcceEEEEecCCCC-CHHHHHHHHHHhCcc
Confidence 454 38999999999 999999999988764
No 173
>PRK12289 GTPase RsgA; Reviewed
Probab=99.25 E-value=3.2e-11 Score=96.84 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=69.0
Q ss_pred cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 87 (173)
+.+.++.++|++++|||++++. ++..+..|+..+.. .++|+|||+||+||.+..++ +........+++.++.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 5666799999999999999876 55567788776633 56999999999999632211 11222334678889999
Q ss_pred cccCCcccHHHHHHHHHHH
Q psy2792 88 SVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~~ 106 (173)
||+++. |+++++..|...
T Consensus 156 SA~tg~-GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGI-GLEALLEQLRNK 173 (352)
T ss_pred EcCCCC-CHHHHhhhhccc
Confidence 999999 999999888653
No 174
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.23 E-value=4.8e-11 Score=99.32 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=70.5
Q ss_pred hcccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhC----------CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 13 MICWADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRA----------VNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~----------~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
++..||++|+|+|+++. +.++++..|..++..+.. ..+.|+|||+||+|+.+...+. +.......
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~ 311 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELE 311 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHH
Confidence 46779999999999863 356666677777765541 2468999999999997543321 22222334
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
..++.+|+|||+++. |+++++.+|.+.+...
T Consensus 312 ~~g~~Vf~ISA~tge-GLdEL~~~L~ell~~~ 342 (500)
T PRK12296 312 ARGWPVFEVSAASRE-GLRELSFALAELVEEA 342 (500)
T ss_pred HcCCeEEEEECCCCC-CHHHHHHHHHHHHHhh
Confidence 457889999999999 9999999999887653
No 175
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.22 E-value=4.9e-11 Score=101.82 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=73.2
Q ss_pred CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. +.+.|+. ++|++++|+|.++.+ ....+..++.+ .++|+++|+||+|+.+.+.+. .
T Consensus 48 tPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~-~ 119 (591)
T TIGR00437 48 LPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIR-I 119 (591)
T ss_pred CCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCCh-h
Confidence 7898762 2455654 799999999998743 22333334433 468999999999986555554 3
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
+.+.+++..+++++++||++|. |++++|+++.+..
T Consensus 120 d~~~L~~~lg~pvv~tSA~tg~-Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 120 DEEKLEERLGVPVVPTSATEGR-GIERLKDAIRKAI 154 (591)
T ss_pred hHHHHHHHcCCCEEEEECCCCC-CHHHHHHHHHHHh
Confidence 4677888889999999999999 9999999998754
No 176
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.21 E-value=1.1e-10 Score=81.89 Aligned_cols=99 Identities=20% Similarity=0.150 Sum_probs=70.3
Q ss_pred CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH-
Q psy2792 2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES- 71 (173)
Q Consensus 2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~- 71 (173)
|+|+.+. ....++.++|++++|+|.++..+..... |...... .+.|+++|+||+|+.....+...
T Consensus 52 t~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~ 126 (163)
T cd00880 52 TPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELL 126 (163)
T ss_pred CCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHH
Confidence 6777662 3334789999999999999987665544 4444333 56899999999998654322211
Q ss_pred --HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 72 --LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 72 --~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.........+..++++||+++. |++++++++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~sa~~~~-~v~~l~~~l~~~ 162 (163)
T cd00880 127 ELRLLILLLLLGLPVIAVSALTGE-GIDELREALIEA 162 (163)
T ss_pred HHHHhhcccccCCceEEEeeeccC-CHHHHHHHHHhh
Confidence 1122333345789999999999 999999999864
No 177
>KOG0072|consensus
Probab=99.20 E-value=5.2e-11 Score=82.66 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=71.6
Q ss_pred ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc---CCHHHHHHHhhhcCCeE
Q psy2792 8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ---VDESLGRSTAVKYNCTF 84 (173)
Q Consensus 8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---v~~~~~~~~~~~~~~~~ 84 (173)
..++.||.+.|++|+|+|.+|.+........+..+.+...-.+..++|++||.|....-. +....+....+..-+..
T Consensus 77 PyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~I 156 (182)
T KOG0072|consen 77 PYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQI 156 (182)
T ss_pred HHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEE
Confidence 488999999999999999999876655544443343333245688999999999863211 11111112223334779
Q ss_pred EEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 85 HEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 85 ~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
|++||.+|+ |++++++||.+.+.+
T Consensus 157 v~tSA~kg~-Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 157 VKTSAVKGE-GLDPAMDWLQRPLKS 180 (182)
T ss_pred Eeecccccc-CCcHHHHHHHHHHhc
Confidence 999999999 999999999988765
No 178
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.19 E-value=9.1e-11 Score=92.03 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=68.1
Q ss_pred hcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccC
Q psy2792 13 MICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVAD 91 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 91 (173)
.+.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+||.+... ......+....++.++.+||++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 488999999999999988 88888899887765 4589999999999964311 1122333445688899999999
Q ss_pred CcccHHHHHHHHHH
Q psy2792 92 NSPAIYQAFDHLLT 105 (173)
Q Consensus 92 g~~~v~~lf~~l~~ 105 (173)
+. |+++++..|..
T Consensus 149 g~-gi~~L~~~L~~ 161 (287)
T cd01854 149 GE-GLDELREYLKG 161 (287)
T ss_pred Cc-cHHHHHhhhcc
Confidence 99 99999988764
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.18 E-value=3.4e-10 Score=81.04 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=61.8
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH-HHHHhhhc----CCeEEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL-GRSTAVKY----NCTFHE 86 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~-~~~~~~~~----~~~~~e 86 (173)
.++.++|++|+|+|++++.++... .++..+.. .+.|+++|+||+|+.+......+. ...+.... ...+++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 357899999999999998776543 23333332 358999999999987543222222 12222322 367999
Q ss_pred EcccCCcccHHHHHHHHHHH
Q psy2792 87 VSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~~~ 106 (173)
+||+++. |++++|+.+.+.
T Consensus 155 ~Sa~~~~-~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQ-GVDKLFDAIDEV 173 (174)
T ss_pred EeccCCC-CHHHHHHHHHHh
Confidence 9999999 999999998753
No 180
>KOG1673|consensus
Probab=99.17 E-value=1.3e-10 Score=81.67 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=85.9
Q ss_pred CCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--c---CCHHHHHH
Q psy2792 3 IGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--Q---VDESLGRS 75 (173)
Q Consensus 3 aG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~---v~~~~~~~ 75 (173)
.|++++ +.+....++-+++|+||++.+.+++.+..|+.+.+... ...+| |+||+|.|+--.- + --..++..
T Consensus 77 gG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~ 154 (205)
T KOG1673|consen 77 GGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARK 154 (205)
T ss_pred CCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHH
Confidence 577774 77788899999999999999999999999999988765 24455 5789999963111 0 01234566
Q ss_pred HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG 114 (173)
Q Consensus 76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~ 114 (173)
+|+-.+...|.||+.... ||..+|.-+...+..-+..-
T Consensus 155 YAk~mnAsL~F~Sts~sI-Nv~KIFK~vlAklFnL~~ti 192 (205)
T KOG1673|consen 155 YAKVMNASLFFCSTSHSI-NVQKIFKIVLAKLFNLPWTI 192 (205)
T ss_pred HHHHhCCcEEEeeccccc-cHHHHHHHHHHHHhCCceec
Confidence 788889999999999999 99999999998888755544
No 181
>PRK00098 GTPase RsgA; Reviewed
Probab=99.16 E-value=1.2e-10 Score=91.77 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=65.1
Q ss_pred cccCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDY-AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN 92 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 92 (173)
..++|++++|+|+++++++.. +..|+..+.. .++|+++|+||+||.+... ............++.++++||+++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 589999999999998876544 4678777654 4689999999999953221 112233445567889999999999
Q ss_pred cccHHHHHHHHHH
Q psy2792 93 SPAIYQAFDHLLT 105 (173)
Q Consensus 93 ~~~v~~lf~~l~~ 105 (173)
. |+++++..+..
T Consensus 153 ~-gi~~L~~~l~g 164 (298)
T PRK00098 153 E-GLDELKPLLAG 164 (298)
T ss_pred c-cHHHHHhhccC
Confidence 9 99999987743
No 182
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.15 E-value=1.3e-10 Score=83.09 Aligned_cols=93 Identities=13% Similarity=-0.020 Sum_probs=64.0
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
+.+++++++|++|+|+|++++....+ ..+...+.. .+.|+++|+||+|+.+.... .....+....+..++.+|
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~----~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE----LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh----CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence 56778899999999999987643222 122222221 35899999999998532111 111123334567789999
Q ss_pred ccCCcccHHHHHHHHHHHHhc
Q psy2792 89 VADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i~~ 109 (173)
|+++. |++++++.+.+.+..
T Consensus 78 a~~~~-gi~~L~~~l~~~~~~ 97 (156)
T cd01859 78 AKERL-GTKILRRTIKELAKI 97 (156)
T ss_pred ccccc-cHHHHHHHHHHHHhh
Confidence 99999 999999999887764
No 183
>PRK12288 GTPase RsgA; Reviewed
Probab=99.14 E-value=2.8e-10 Score=91.35 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=67.1
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHhhhcCCeEEEEcccCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTAVKYNCTFHEVSVADN 92 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~~e~Sak~g 92 (173)
..|+|.+++||+++...+|..+..|+..+.. .++|++||+||+||....+. ............++.++++||+++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3569999999999887899999999876543 46899999999999643210 011222334456889999999999
Q ss_pred cccHHHHHHHHHHH
Q psy2792 93 SPAIYQAFDHLLTE 106 (173)
Q Consensus 93 ~~~v~~lf~~l~~~ 106 (173)
. |++++++.|...
T Consensus 194 ~-GideL~~~L~~k 206 (347)
T PRK12288 194 E-GLEELEAALTGR 206 (347)
T ss_pred c-CHHHHHHHHhhC
Confidence 9 999999988653
No 184
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=6.6e-10 Score=80.15 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=76.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+||+++ ++..+.++++++|++.|.+.+..| +....++.+... ..+|++|+.||.||.+.. +.+...++...
T Consensus 75 tPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~ 148 (187)
T COG2229 75 TPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDAL--PPEKIREALKL 148 (187)
T ss_pred CCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCC--CHHHHHHHHHh
Confidence 8999994 999999999999999999999888 444444444432 239999999999997543 45565555444
Q ss_pred c--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 Y--NCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~--~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
. ..+.++++|.+++ ++.+.++.+...
T Consensus 149 ~~~~~~vi~~~a~e~~-~~~~~L~~ll~~ 176 (187)
T COG2229 149 ELLSVPVIEIDATEGE-GARDQLDVLLLK 176 (187)
T ss_pred ccCCCceeeeecccch-hHHHHHHHHHhh
Confidence 3 6889999999999 999888877654
No 185
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.13 E-value=4.1e-10 Score=79.85 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=62.2
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHH-HHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEc
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVS 88 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~S 88 (173)
..++..+|++++|+|++++ +.....| ...+.. .+.|+++|+||+|+........+....+....+ ..++++|
T Consensus 77 ~~~~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s 150 (168)
T cd04163 77 WSALKDVDLVLFVVDASEP--IGEGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS 150 (168)
T ss_pred HHHHHhCCEEEEEEECCCc--cCchHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE
Confidence 4568899999999999987 2222333 333433 258999999999986322222333344444443 6789999
Q ss_pred ccCCcccHHHHHHHHHHH
Q psy2792 89 VADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~ 106 (173)
++++. |++++|+.|.+.
T Consensus 151 ~~~~~-~~~~l~~~l~~~ 167 (168)
T cd04163 151 ALKGE-NVDELLEEIVKY 167 (168)
T ss_pred eccCC-ChHHHHHHHHhh
Confidence 99999 999999999764
No 186
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.12 E-value=2.7e-10 Score=84.11 Aligned_cols=101 Identities=12% Similarity=-0.026 Sum_probs=64.7
Q ss_pred CCCCCCccHhhh---cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHH
Q psy2792 2 TIGLTEGTLTAM---ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRST 76 (173)
Q Consensus 2 TaG~e~~~~~~y---~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~ 76 (173)
|||+.. +...| ...+|++++|+|+++.........|. +... .++|+++|+||+|+...... ..++....
T Consensus 75 tpG~~~-~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 148 (192)
T cd01889 75 CPGHAS-LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKK 148 (192)
T ss_pred CCCcHH-HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHH
Confidence 677743 33334 35679999999998754333333332 1121 24799999999998632211 11222221
Q ss_pred -hh------hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 -AV------KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 -~~------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.. ..+++++++||++|. |++++++.|..++..
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~-gi~~L~~~l~~~~~~ 187 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGG-GEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCC-CHHHHHHHHHhcccc
Confidence 11 235789999999999 999999999988764
No 187
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.12 E-value=6.2e-10 Score=94.88 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=66.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|||++++ ++..++..+|++|+|||+++ +++++.+ ..+. ..++|+++++||+|+.+. ..++....
T Consensus 142 TPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i----~~~~----~~~vPiIVviNKiDl~~~---~~e~v~~~ 210 (587)
T TIGR00487 142 TPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI----SHAK----AANVPIIVAINKIDKPEA---NPDRVKQE 210 (587)
T ss_pred CCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH----HHHH----HcCCCEEEEEECcccccC---CHHHHHHH
Confidence 8999885 77788999999999999987 3444332 1122 246899999999998642 23333333
Q ss_pred hhh-------cC--CeEEEEcccCCcccHHHHHHHHHH
Q psy2792 77 AVK-------YN--CTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 77 ~~~-------~~--~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
+.. ++ ..++++||++|. |++++|++|..
T Consensus 211 L~~~g~~~~~~~~~~~~v~iSAktGe-GI~eLl~~I~~ 247 (587)
T TIGR00487 211 LSEYGLVPEDWGGDTIFVPVSALTGD-GIDELLDMILL 247 (587)
T ss_pred HHHhhhhHHhcCCCceEEEEECCCCC-ChHHHHHhhhh
Confidence 222 22 469999999999 99999999874
No 188
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.11 E-value=1.5e-10 Score=78.66 Aligned_cols=58 Identities=34% Similarity=0.513 Sum_probs=44.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH---HHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS---TLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~---~~~~i~~~~~~~~~piilv~NK~D 61 (173)
++|++.. ....++.++|++|+|||+++++||+.+.. |+..+.... .++|++|||||.|
T Consensus 57 ~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D 119 (119)
T PF08477_consen 57 FGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD 119 (119)
T ss_dssp ESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred cCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence 3556552 34556999999999999999999998744 566665544 5699999999998
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.11 E-value=2.7e-10 Score=97.13 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC--CHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV--DESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v--~~~~~ 73 (173)
|||++++ ....++.++|++|+|+|+++ +++++++. + +.. .++| +++|+||+|+.+...+ ..++.
T Consensus 57 tPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-i---l~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei 128 (581)
T TIGR00475 57 VPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA-V---LDL----LGIPHTIVVITKADRVNEEEIKRTEMFM 128 (581)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH-H---HHH----cCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 6888775 44567889999999999998 55665543 1 222 3477 9999999999753322 12334
Q ss_pred HHHhhhc----CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 74 RSTAVKY----NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 74 ~~~~~~~----~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..+.... +++++++||++|. |+++++..|...+..
T Consensus 129 ~~~l~~~~~~~~~~ii~vSA~tG~-GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 129 KQILNSYIFLKNAKIFKTSAKTGQ-GIGELKKELKNLLES 167 (581)
T ss_pred HHHHHHhCCCCCCcEEEEeCCCCC-CchhHHHHHHHHHHh
Confidence 4444443 4679999999999 999999998876654
No 190
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.10 E-value=6e-10 Score=94.89 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=66.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-------- 68 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-------- 68 (173)
|||++.+ ++..+++.+|++|+|||+++ +++++.+..+ .. .++|+++|+||+|+......
T Consensus 76 TpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 76 TPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM----YKTPFVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred CCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH----cCCCEEEEEECCCccchhhhccCchHHH
Confidence 8999874 78889999999999999997 5666654322 22 36899999999998632100
Q ss_pred ----CHHH------------HHHHhh------------hc--CCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 69 ----DESL------------GRSTAV------------KY--NCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 69 ----~~~~------------~~~~~~------------~~--~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
.... ...+++ .+ .+.++.+||++|+ |+++++.+|..
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe-GideLl~~l~~ 213 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE-GIPELLTMLAG 213 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC-ChhHHHHHHHH
Confidence 0000 001111 11 2578999999999 99999998864
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.09 E-value=5.5e-10 Score=96.91 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=68.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS- 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~- 75 (173)
|||++.+ ++..++..+|++|+|+|+++ +++++.+.. +. ..++|+|||+||+|+.... .+....
T Consensus 302 TPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k----~~~iPiIVViNKiDl~~~~---~e~v~~e 370 (742)
T CHL00189 302 TPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINY----IQ----AANVPIIVAINKIDKANAN---TERIKQQ 370 (742)
T ss_pred CCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH----HH----hcCceEEEEEECCCccccC---HHHHHHH
Confidence 8999874 77789999999999999987 345544322 22 2468999999999986421 222211
Q ss_pred H------hhhcC--CeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 76 T------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 76 ~------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
+ ...++ ++++++||++|. |++++|++|....
T Consensus 371 L~~~~ll~e~~g~~vpvv~VSAktG~-GIdeLle~I~~l~ 409 (742)
T CHL00189 371 LAKYNLIPEKWGGDTPMIPISASQGT-NIDKLLETILLLA 409 (742)
T ss_pred HHHhccchHhhCCCceEEEEECCCCC-CHHHHHHhhhhhh
Confidence 1 22233 679999999999 9999999998653
No 192
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.07 E-value=6.5e-10 Score=89.80 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=67.5
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC--
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC-- 82 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~-- 82 (173)
+...|+..++++++|+|+.|.. ..|..++.+.. .+.|+++|+||+||.. +.+..+.... +++..++
T Consensus 56 ~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~ 127 (360)
T TIGR03597 56 LLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKP 127 (360)
T ss_pred HHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCc
Confidence 6677889999999999997653 34666776664 4679999999999864 3333444433 3556666
Q ss_pred -eEEEEcccCCcccHHHHHHHHHHH
Q psy2792 83 -TFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 83 -~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++++||++|. |++++|..|.+.
T Consensus 128 ~~i~~vSAk~g~-gv~eL~~~l~~~ 151 (360)
T TIGR03597 128 VDIILVSAKKGN-GIDELLDKIKKA 151 (360)
T ss_pred CcEEEecCCCCC-CHHHHHHHHHHH
Confidence 48999999999 999999998754
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.07 E-value=1.1e-09 Score=90.39 Aligned_cols=93 Identities=22% Similarity=0.135 Sum_probs=65.4
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHH--HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFD--YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~ 69 (173)
|+|+++. ....++.++|++|+|+|.++..+.. .+..|+. . .+.|+++|+||+|+.+.
T Consensus 56 T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~---~----~~~piilv~NK~D~~~~---- 124 (435)
T PRK00093 56 TGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR---K----SNKPVILVVNKVDGPDE---- 124 (435)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---H----cCCcEEEEEECccCccc----
Confidence 8898761 2456789999999999998753332 2233433 2 25899999999997531
Q ss_pred HHHHHHHhhhcCCe-EEEEcccCCcccHHHHHHHHHHHH
Q psy2792 70 ESLGRSTAVKYNCT-FHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 70 ~~~~~~~~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.....++ ..+++. ++++||++|. |++++|+.++...
T Consensus 125 ~~~~~~~-~~lg~~~~~~iSa~~g~-gv~~l~~~I~~~~ 161 (435)
T PRK00093 125 EADAYEF-YSLGLGEPYPISAEHGR-GIGDLLDAILEEL 161 (435)
T ss_pred hhhHHHH-HhcCCCCCEEEEeeCCC-CHHHHHHHHHhhC
Confidence 1222222 345654 8999999999 9999999998743
No 194
>KOG1707|consensus
Probab=99.06 E-value=2e-10 Score=95.27 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=77.7
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCCHHH-HHHHhhhcC-Ce-
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVDESL-GRSTAVKYN-CT- 83 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~-~~~~~~~~~-~~- 83 (173)
....-++.||++.+||+++++++++.+. .|+..+++..+. .++||||||||+|+......+.+. ..-+..++. ++
T Consensus 72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEt 151 (625)
T KOG1707|consen 72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIET 151 (625)
T ss_pred HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHH
Confidence 3466789999999999999999999995 599999987643 579999999999987544433333 333333332 33
Q ss_pred EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 84 FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 84 ~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++|||++.. ++.++|....+.++.
T Consensus 152 ciecSA~~~~-n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 152 CIECSALTLA-NVSELFYYAQKAVIH 176 (625)
T ss_pred HHhhhhhhhh-hhHhhhhhhhheeec
Confidence 8999999999 999999988777665
No 195
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.06 E-value=1.1e-09 Score=95.78 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=67.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-- 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-- 74 (173)
|+|++++ ++..++..+|++|||||+++ +++++.+. .+. ..++|+|||+||+|+.+.. .+...
T Consensus 344 TPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~----~~~vPiIVviNKiDl~~a~---~e~V~~e 412 (787)
T PRK05306 344 TPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAK----AAGVPIIVAINKIDKPGAN---PDRVKQE 412 (787)
T ss_pred CCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHH----hcCCcEEEEEECccccccC---HHHHHHH
Confidence 8999885 77778999999999999987 44544321 122 2469999999999996421 11111
Q ss_pred -----HHhhhcC--CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 75 -----STAVKYN--CTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 75 -----~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++..++ +.++++||++|. ||+++|++|...
T Consensus 413 L~~~~~~~e~~g~~vp~vpvSAktG~-GI~eLle~I~~~ 450 (787)
T PRK05306 413 LSEYGLVPEEWGGDTIFVPVSAKTGE-GIDELLEAILLQ 450 (787)
T ss_pred HHHhcccHHHhCCCceEEEEeCCCCC-CchHHHHhhhhh
Confidence 1223333 679999999999 999999998753
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.06 E-value=8.5e-10 Score=96.30 Aligned_cols=90 Identities=10% Similarity=-0.039 Sum_probs=64.1
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-Hhhh----cCCeEEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-TAVK----YNCTFHE 86 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~~~----~~~~~~e 86 (173)
.+++.+|++|+|+|+++..++.++. ++..+.. .++|++||+||+|+.+... .+.... +... ...+.+.
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 4578999999999999987777664 3344433 4589999999999964221 111111 1111 1245689
Q ss_pred EcccCCcccHHHHHHHHHHHHhc
Q psy2792 87 VSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+||++|. ||+++|+.+.+.+..
T Consensus 601 iSAktg~-gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGW-HTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCC-CHHHHHHHHHHHHHH
Confidence 9999999 999999999987765
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.05 E-value=1.3e-09 Score=95.21 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=67.0
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|+|++.. ....++..||++|+|+|.++. +... ..|...+.. .++|+|+|+||+|+.... .
T Consensus 330 T~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~---~ 400 (712)
T PRK09518 330 TGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--LTSTDERIVRMLRR----AGKPVVLAVNKIDDQASE---Y 400 (712)
T ss_pred CCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEECcccccch---h
Confidence 8898741 334578999999999999864 2222 235555543 468999999999985421 1
Q ss_pred HHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 71 ~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.....+....+ ..|++||++|. ||+++|++|+..+..
T Consensus 401 ~~~~~~~lg~~-~~~~iSA~~g~-GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 401 DAAEFWKLGLG-EPYPISAMHGR-GVGDLLDEALDSLKV 437 (712)
T ss_pred hHHHHHHcCCC-CeEEEECCCCC-CchHHHHHHHHhccc
Confidence 11222222222 36799999999 999999999988755
No 198
>COG1159 Era GTPase [General function prediction only]
Probab=99.04 E-value=1e-09 Score=84.86 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=83.5
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHH-HHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTL-QNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|+|.-+. ....-+.++|+++||.|.++. +.....|+ +.+.. .+.|++++.||+|..+....-.
T Consensus 61 TPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~ 134 (298)
T COG1159 61 TPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--WGPGDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLL 134 (298)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--CCccHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHH
Confidence 7777661 233458899999999999874 22234444 33333 3589999999999865443112
Q ss_pred HHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcccccccchhccccc
Q psy2792 71 SLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGT 129 (173)
Q Consensus 71 ~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 129 (173)
.....+..... ...+++||+.|. |++.+.+.+...+.++++.+++..-+..+.+...+
T Consensus 135 ~~~~~~~~~~~f~~ivpiSA~~g~-n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~a 193 (298)
T COG1159 135 KLIAFLKKLLPFKEIVPISALKGD-NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAA 193 (298)
T ss_pred HHHHHHHhhCCcceEEEeeccccC-CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHH
Confidence 22222223222 458999999999 99999999999999999999987766555544433
No 199
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.02 E-value=1.4e-09 Score=80.02 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=65.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~ 77 (173)
|||..++ .....+..+|++|+|+|..+.-... ....+..+.. .++|+|+|.||+|+...+. +..+....+.
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLL 151 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHH
T ss_pred cccccceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhc
Confidence 6788764 3445588999999999998653322 2233333444 4589999999999862111 0011111232
Q ss_pred hhc------CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 78 VKY------NCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 78 ~~~------~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+.. .++++.+||++|. |+++|++.|.+.++
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g~-gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTGD-GIDELLEALVELLP 187 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTTB-THHHHHHHHHHHS-
T ss_pred cccccCccccceEEEEecCCCC-CHHHHHHHHHHhCc
Confidence 222 2569999999999 99999999988764
No 200
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.01 E-value=1.8e-09 Score=89.18 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=62.9
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh----hhcCCeEEEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA----VKYNCTFHEV 87 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~ 87 (173)
.+++.+|++|+|+|+++..+..+.. +...+.+ .+.|+++|+||+|+.+.... .+....+. ....++++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEE
Confidence 4788999999999999876665543 3333333 35899999999998632211 11111111 1224679999
Q ss_pred cccCCcccHHHHHHHHHHHHhc
Q psy2792 88 SVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
||++|. ||+++|+.+......
T Consensus 325 SA~~~~-gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 325 SALTGQ-GVDKLLEAIDEAYEN 345 (435)
T ss_pred eCCCCC-CHHHHHHHHHHHHHH
Confidence 999999 999999998875543
No 201
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.00 E-value=2.8e-09 Score=87.85 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=63.6
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEV 87 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 87 (173)
....+++++|++|+|+|..+..+... ..+...+.+ .+.|+++|+||+|+.+.... ..+ +..+++ .++++
T Consensus 71 ~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~v 140 (429)
T TIGR03594 71 QAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPI 140 (429)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEE
Confidence 45567899999999999987533322 112222333 35899999999998653321 122 234565 69999
Q ss_pred cccCCcccHHHHHHHHHHHHhc
Q psy2792 88 SVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
||++|. |++++++++...+.+
T Consensus 141 Sa~~g~-gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 141 SAEHGR-GIGDLLDAILELLPE 161 (429)
T ss_pred eCCcCC-ChHHHHHHHHHhcCc
Confidence 999999 999999999988755
No 202
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.00 E-value=6.6e-10 Score=91.68 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=61.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----CCHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----VDESLGR 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~ 74 (173)
|||++++ ....++.++|++|+|||+++.+++..... +...+.... ...|+|||+||+|+.+... ...++..
T Consensus 92 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~ 169 (426)
T TIGR00483 92 CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFEAIKKEVS 169 (426)
T ss_pred CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHHHHHHHHH
Confidence 7898775 23345789999999999998754321111 111222222 2357999999999963211 1123445
Q ss_pred HHhhhcC-----CeEEEEcccCCcccHHHHH
Q psy2792 75 STAVKYN-----CTFHEVSVADNSPAIYQAF 100 (173)
Q Consensus 75 ~~~~~~~-----~~~~e~Sak~g~~~v~~lf 100 (173)
.+++..+ +.++++||++|. ||.+++
T Consensus 170 ~~~~~~g~~~~~~~~i~iSA~~g~-ni~~~~ 199 (426)
T TIGR00483 170 NLIKKVGYNPDTVPFIPISAWNGD-NVIKKS 199 (426)
T ss_pred HHHHHcCCCcccceEEEeeccccc-cccccc
Confidence 5665554 569999999999 998744
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.98 E-value=1.5e-09 Score=89.06 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=65.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~ 73 (173)
|+|++++ .....+..+|++|+|+|+++. ++.+.+. .+... ...|+++|+||+|+.+.... ..++.
T Consensus 87 tPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 87 APGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALEII---GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred CCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHHHc---CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 6788764 334446678999999999863 2333332 22221 22468999999998643211 12233
Q ss_pred HHHhhhc---CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 74 RSTAVKY---NCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 74 ~~~~~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
..+.... ++.++++||++|. |+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~-gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNA-NIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCC-ChHHHHHHHHHhCC
Confidence 3333332 5679999999999 99999999998664
No 204
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.97 E-value=7.6e-09 Score=78.86 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=39.9
Q ss_pred CCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.+|+++|+||+|+.. .++...++.. ..++++||++|. |++++|+.+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~-gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGL-NLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCC-CHHHHHHHHHHHh
Confidence 369999999999853 4555555553 358999999999 9999999998755
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.95 E-value=2.7e-09 Score=91.17 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHh-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTA- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~- 77 (173)
|||++++ ....+++.+|++|+|+|.++. .+.....|+..+.. .++|+|+|+||+|+.+.+.. ..++...+.
T Consensus 71 TPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~ 145 (594)
T TIGR01394 71 TPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFA 145 (594)
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 8999885 667899999999999999863 34555667666665 35899999999998643310 012223332
Q ss_pred ------hhcCCeEEEEcccCCc---------ccHHHHHHHHHHHHhcC
Q psy2792 78 ------VKYNCTFHEVSVADNS---------PAIYQAFDHLLTESRGG 110 (173)
Q Consensus 78 ------~~~~~~~~e~Sak~g~---------~~v~~lf~~l~~~i~~~ 110 (173)
....++++.+||++|. .|+..+|+.|++.+...
T Consensus 146 ~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 146 ELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred hhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 2234678999999984 16999999999888653
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.95 E-value=3.6e-09 Score=86.92 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=64.3
Q ss_pred CCCCCCccHhhhccc---CcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHH
Q psy2792 2 TIGLTEGTLTAMICW---ADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESL 72 (173)
Q Consensus 2 TaG~e~~~~~~y~~~---ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~ 72 (173)
|||++++ ...|+.. +|++|+|+|+++. ++++.+.. +... ...|+++|+||+|+.+.... ..++
T Consensus 92 tPG~~~f-~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 92 APGHETL-MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDII---GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred CCCHHHH-HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc---CCCcEEEEEEeeccccchhHHHHHHH
Confidence 6777553 3445554 6999999999953 34443322 2221 22368999999998653221 1223
Q ss_pred HHHHhhhc---CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 73 GRSTAVKY---NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 73 ~~~~~~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...++... +++++++||++|. |++++|+.|...+..
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~-gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKV-NIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCc-CHHHHHHHHHHhCCC
Confidence 33444322 4679999999999 999999999887643
No 207
>KOG0074|consensus
Probab=98.95 E-value=8.6e-10 Score=76.46 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=72.9
Q ss_pred ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH--H--hhhcCCe
Q psy2792 8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS--T--AVKYNCT 83 (173)
Q Consensus 8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--~--~~~~~~~ 83 (173)
+.+..||.+.|++|||.|.+|...|+++...+.++.+......+|+.+.+||.|+...-.+. +.+.. + .....+.
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswh 155 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWH 155 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEE
Confidence 58999999999999999999999999987777666665545789999999999986432221 11111 1 1222356
Q ss_pred EEEEcccCCcccHHHHHHHHHHH
Q psy2792 84 FHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 84 ~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
..+|||.+++ ++.+..+|+...
T Consensus 156 Iq~csals~e-g~~dg~~wv~sn 177 (185)
T KOG0074|consen 156 IQECSALSLE-GSTDGSDWVQSN 177 (185)
T ss_pred eeeCcccccc-CccCcchhhhcC
Confidence 7899999999 999998888753
No 208
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.94 E-value=5.2e-09 Score=77.04 Aligned_cols=95 Identities=8% Similarity=-0.038 Sum_probs=61.9
Q ss_pred cHhhhcccC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhhhcCCe
Q psy2792 9 TLTAMICWA---DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAVKYNCT 83 (173)
Q Consensus 9 ~~~~y~~~a---d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~~~~ 83 (173)
+...|+..+ +++++|+|.+++.+... .++...... .++|+++|+||+|+.+..+.. .+.+..........
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 445666655 67888999887543332 222222221 358999999999986432211 12233333333577
Q ss_pred EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 84 FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 84 ~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++++||+++. |++++|+.|...+.+
T Consensus 171 ~~~~Sa~~~~-gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQ-GIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCC-CHHHHHHHHHHHhcC
Confidence 9999999999 999999999877654
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.91 E-value=6.3e-09 Score=89.30 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=67.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC--HHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD--ESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~--~~~~ 73 (173)
|||++++ .....+.++|++++|+|+++ +++.+.+. .+.. .++| +|||+||+|+.+...+. .++.
T Consensus 58 tPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~----il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei 129 (614)
T PRK10512 58 VPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA----ILQL----TGNPMLTVALTKADRVDEARIAEVRRQV 129 (614)
T ss_pred CCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH----HHHH----cCCCeEEEEEECCccCCHHHHHHHHHHH
Confidence 7888775 33456889999999999987 44554432 2222 2355 57999999986432211 2233
Q ss_pred HHHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 74 RSTAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 74 ~~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..+....+ .+++++||++|. |++++++.|......
T Consensus 130 ~~~l~~~~~~~~~ii~VSA~tG~-gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 130 KAVLREYGFAEAKLFVTAATEGR-GIDALREHLLQLPER 167 (614)
T ss_pred HHHHHhcCCCCCcEEEEeCCCCC-CCHHHHHHHHHhhcc
Confidence 44444443 579999999999 999999999875443
No 210
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.91 E-value=2.6e-09 Score=76.32 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=62.9
Q ss_pred cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792 9 TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE 86 (173)
Q Consensus 9 ~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 86 (173)
+...|+ ...|++|+|.|.++.+ .-.....++.+. ++|+|+|.||+|+...+.+.. ....+.+.+|++++.
T Consensus 69 v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~ 140 (156)
T PF02421_consen 69 VARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIP 140 (156)
T ss_dssp HHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEE
T ss_pred HHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEE
Confidence 556665 5899999999998753 223344455553 599999999999864433322 345667778999999
Q ss_pred EcccCCcccHHHHHHHH
Q psy2792 87 VSVADNSPAIYQAFDHL 103 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l 103 (173)
+||+++. |++++++.|
T Consensus 141 ~sa~~~~-g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGE-GIDELKDAI 156 (156)
T ss_dssp EBTTTTB-THHHHHHHH
T ss_pred EEeCCCc-CHHHHHhhC
Confidence 9999999 999998865
No 211
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.89 E-value=4.6e-09 Score=86.68 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=59.2
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----CCHHHHHH
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----VDESLGRS 75 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~ 75 (173)
|||++++. ....+.++|++|+|+|++++..+.....+...+.... ...|+++|+||+|+.+... ...++...
T Consensus 91 tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~ 168 (425)
T PRK12317 91 CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSK 168 (425)
T ss_pred CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHH
Confidence 89987752 2344679999999999987322211112221222222 2246999999999964211 11234444
Q ss_pred HhhhcC-----CeEEEEcccCCcccHHHHH
Q psy2792 76 TAVKYN-----CTFHEVSVADNSPAIYQAF 100 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g~~~v~~lf 100 (173)
++...+ +.++++||++|. |+++++
T Consensus 169 ~l~~~g~~~~~~~ii~iSA~~g~-gi~~~~ 197 (425)
T PRK12317 169 LLKMVGYKPDDIPFIPVSAFEGD-NVVKKS 197 (425)
T ss_pred HHHhhCCCcCcceEEEeecccCC-Cccccc
Confidence 554444 468999999999 998754
No 212
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=8.5e-09 Score=73.76 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=57.1
Q ss_pred hcccCcEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 13 MICWADGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
-+.+||++++|.|+.++.. ...+..+ +... ..+.|+++|.||+|+.+...+ ......+.+.+....+.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~~--~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHH---HHhc--cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 4789999999999998632 2222222 2222 245899999999999542211 112222333233335789999
Q ss_pred CCcccHHHHHHHHHHHH
Q psy2792 91 DNSPAIYQAFDHLLTES 107 (173)
Q Consensus 91 ~g~~~v~~lf~~l~~~i 107 (173)
.+. |++++.+.+...+
T Consensus 79 ~~~-~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPF-GKGSLIQLLRQFS 94 (157)
T ss_pred ccc-cHHHHHHHHHHHH
Confidence 999 9999999987654
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.87 E-value=1.8e-08 Score=86.13 Aligned_cols=95 Identities=17% Similarity=0.067 Sum_probs=65.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC----C---
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV----D--- 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v----~--- 69 (173)
|||++++ ++..++..+|++|+|||+++ +++++.+..+ .. .++|+++|+||+|+...... .
T Consensus 78 TPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 78 TPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR----RKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred CCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH----cCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 8999885 67778899999999999997 6677655422 22 46899999999998521100 0
Q ss_pred -----HHH-----------HHHHhhhc---------------CCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 70 -----ESL-----------GRSTAVKY---------------NCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 70 -----~~~-----------~~~~~~~~---------------~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
... ........ .+.++++||++|. |+++++..+..
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe-Gi~dLl~~i~~ 215 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE-GIPDLLMVLAG 215 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC-ChHHHHHHHHH
Confidence 000 00011111 2568999999999 99999988764
No 214
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.86 E-value=1.6e-08 Score=75.47 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=49.5
Q ss_pred CCCCCCc--cHhhhcccC-cEEEEEEeCCCh-hhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWA-DGCIIVYSLIDK-ESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~a-d~iilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~ 64 (173)
|+|+++. ....||+++ +++|||+|.++. .++..+..|+..+..... ...+|++||+||+|+..
T Consensus 55 ~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 55 VPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 7888873 667889999 999999999997 678887777666543221 25799999999999853
No 215
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.85 E-value=2.4e-08 Score=87.67 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=68.2
Q ss_pred hhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 11 TAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 11 ~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
..|+ ..+|++|+|+|.++.+. ...|..++.+ .++|+++|+||+|+.+.+.+ ..+.+.+.+.+|++++++|
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiS 149 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLV 149 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEE
Confidence 3454 38999999999988543 2335555554 35899999999998755555 3456777888999999999
Q ss_pred ccCCcccHHHHHHHHHHHH
Q psy2792 89 VADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i 107 (173)
|++|. |++++++.+.+..
T Consensus 150 A~~g~-GIdeL~~~I~~~~ 167 (772)
T PRK09554 150 STRGR-GIEALKLAIDRHQ 167 (772)
T ss_pred eecCC-CHHHHHHHHHHhh
Confidence 99999 9999999888754
No 216
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.84 E-value=2.8e-08 Score=89.07 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=65.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE------ 70 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~------ 70 (173)
|||++.+ ++..++..+|++|+|+|+++ +++++.+. .+.. .++|+++|+||+|+.....+..
T Consensus 533 TPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~ 604 (1049)
T PRK14845 533 TPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLL 604 (1049)
T ss_pred CCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccchhhhh
Confidence 8999874 66677889999999999987 55665543 2222 3589999999999853221100
Q ss_pred ------HH-HHH-----------Hh------------hhc--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 71 ------SL-GRS-----------TA------------VKY--NCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 71 ------~~-~~~-----------~~------------~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+. ..+ ++ +.+ .+.+++|||++|+ |+++|...|...
T Consensus 605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe-GId~Ll~~l~~l 671 (1049)
T PRK14845 605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE-GIPELLMMVAGL 671 (1049)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC-CHHHHHHHHHHh
Confidence 00 000 11 111 2568999999999 999999887643
No 217
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.83 E-value=9.3e-09 Score=76.96 Aligned_cols=93 Identities=18% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC----CHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV----DESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v----~~~~~~~ 75 (173)
|||++++ ....++..+|++|+|+|+++... +........+.. . ...++|+|+||+|+...... ...+...
T Consensus 84 TpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 84 TPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred CCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 8998774 34456899999999999987521 111222222222 1 22457889999998642110 0123344
Q ss_pred HhhhcC---CeEEEEcccCCcccHHHH
Q psy2792 76 TAVKYN---CTFHEVSVADNSPAIYQA 99 (173)
Q Consensus 76 ~~~~~~---~~~~e~Sak~g~~~v~~l 99 (173)
+....+ ..++.+||++|. |+.+.
T Consensus 160 ~~~~~~~~~~~ii~iSA~~g~-ni~~~ 185 (208)
T cd04166 160 FAAKLGIEDITFIPISALDGD-NVVSR 185 (208)
T ss_pred HHHHcCCCCceEEEEeCCCCC-CCccC
Confidence 445555 348999999999 98743
No 218
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.77 E-value=3.2e-08 Score=70.67 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=55.4
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHH-HHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccH
Q psy2792 18 DGCIIVYSLIDKESFDYAVSTLQN-LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAI 96 (173)
Q Consensus 18 d~iilv~d~~~~~s~~~~~~~~~~-i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v 96 (173)
|++|+|+|+.++.+.. ..|+.. ... ..+.|+|+|.||+|+.....+ .+....+....+..++.+||+++. |+
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~-gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIK---EKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQ-GI 73 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHh---cCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCc-Ch
Confidence 7899999999876544 234441 221 246899999999998532111 111112323335568999999999 99
Q ss_pred HHHHHHHHHHH
Q psy2792 97 YQAFDHLLTES 107 (173)
Q Consensus 97 ~~lf~~l~~~i 107 (173)
+++++.+....
T Consensus 74 ~~L~~~i~~~~ 84 (155)
T cd01849 74 EKKESAFTKQT 84 (155)
T ss_pred hhHHHHHHHHh
Confidence 99999887654
No 219
>PRK09866 hypothetical protein; Provisional
Probab=98.76 E-value=1.1e-07 Score=81.03 Aligned_cols=100 Identities=20% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCCCCCc-------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH
Q psy2792 2 TIGLTEG-------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74 (173)
Q Consensus 2 TaG~e~~-------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~ 74 (173)
|+|.... .....+.+||+|+||+|.+...+..+ ......+.... ...|+++|.||+|+.+...-..+...
T Consensus 237 TPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~--K~~PVILVVNKIDl~dreeddkE~Ll 313 (741)
T PRK09866 237 TPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG--QSVPLYVLVNKFDQQDRNSDDADQVR 313 (741)
T ss_pred CCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC--CCCCEEEEEEcccCCCcccchHHHHH
Confidence 7888641 23346999999999999987533332 22333444322 23699999999998532221233333
Q ss_pred HHhh----hcC---CeEEEEcccCCcccHHHHHHHHHH
Q psy2792 75 STAV----KYN---CTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 75 ~~~~----~~~---~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
.+.. ..+ ..+|.+||+.|. |++++++.|..
T Consensus 314 e~V~~~L~q~~i~f~eIfPVSAlkG~-nid~LLdeI~~ 350 (741)
T PRK09866 314 ALISGTLMKGCITPQQIFPVSSMWGY-LANRARHELAN 350 (741)
T ss_pred HHHHHHHHhcCCCCceEEEEeCCCCC-CHHHHHHHHHh
Confidence 3322 112 358999999999 99999998876
No 220
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.76 E-value=4.7e-08 Score=79.88 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=68.4
Q ss_pred CCCCCC--------c--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTE--------G--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~--------~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++ | ....-+.+||.+++|+|.+.+.+-.+.. .+. .. ..+.|+++|.||+||........
T Consensus 272 TAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~---~~--~~~~~~i~v~NK~DL~~~~~~~~- 344 (454)
T COG0486 272 TAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE---LL--PKKKPIIVVLNKADLVSKIELES- 344 (454)
T ss_pred cCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH---hc--ccCCCEEEEEechhcccccccch-
Confidence 999987 3 5556799999999999999862222111 111 11 36789999999999975433111
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.....+..++.+||++|. |++.+.+.|...+...
T Consensus 345 ----~~~~~~~~~i~iSa~t~~-Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 345 ----EKLANGDAIISISAKTGE-GLDALREAIKQLFGKG 378 (454)
T ss_pred ----hhccCCCceEEEEecCcc-CHHHHHHHHHHHHhhc
Confidence 111224568999999999 9999999998877664
No 221
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.74 E-value=3.6e-08 Score=69.35 Aligned_cols=76 Identities=14% Similarity=0.006 Sum_probs=52.3
Q ss_pred hhhcccCcEEEEEEeCCChhhHH--HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 11 TAMICWADGCIIVYSLIDKESFD--YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
...+.++|++++|+|+.++.+.. .+..|+... . .+.|+++|+||+|+..... ......+.+..+..++.+|
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~--~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D--PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c--CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 34688999999999999876543 334444332 1 4689999999999854222 1223344555667899999
Q ss_pred ccCCc
Q psy2792 89 VADNS 93 (173)
Q Consensus 89 ak~g~ 93 (173)
|+++.
T Consensus 79 a~~~~ 83 (141)
T cd01857 79 ALKEN 83 (141)
T ss_pred ecCCC
Confidence 99876
No 222
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.74 E-value=1.8e-08 Score=73.48 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=52.9
Q ss_pred Hhhhccc---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhcC--C
Q psy2792 10 LTAMICW---ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRSTAVKYN--C 82 (173)
Q Consensus 10 ~~~y~~~---ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~ 82 (173)
...|++. +|++|+|+|.++.-+..... ++..+.. .++|+++|+||+|+...... ..++....+...+ +
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 3466664 57999999998754444432 2233332 35899999999998643211 1233444444443 4
Q ss_pred eEEEEcccCCcccHH
Q psy2792 83 TFHEVSVADNSPAIY 97 (173)
Q Consensus 83 ~~~e~Sak~g~~~v~ 97 (173)
.+|++||++|+ ||+
T Consensus 166 ~v~~~Sa~~g~-gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKT-GID 179 (179)
T ss_pred ceEEEECCCCC-CCC
Confidence 79999999999 873
No 223
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=5.1e-08 Score=70.77 Aligned_cols=88 Identities=13% Similarity=-0.045 Sum_probs=58.8
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
...+.+||++++|+|+.++..... ..+.. .. .+.|+++|.||+|+.+...+ ....++....+..++.+||+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~-~~i~~----~~--~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~ 84 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRN-PLLEK----IL--GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAK 84 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCC-hhhHh----Hh--cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECC
Confidence 456889999999999987643221 11222 11 34789999999998532111 11112223334568999999
Q ss_pred CCcccHHHHHHHHHHHHh
Q psy2792 91 DNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 91 ~g~~~v~~lf~~l~~~i~ 108 (173)
++. |++++...+...+.
T Consensus 85 ~~~-gi~~L~~~l~~~l~ 101 (171)
T cd01856 85 SGK-GVKKLLKAAKKLLK 101 (171)
T ss_pred Ccc-cHHHHHHHHHHHHH
Confidence 999 99999999988763
No 224
>COG2262 HflX GTPases [General function prediction only]
Probab=98.71 E-value=1.6e-07 Score=75.66 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=64.6
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNS 93 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~ 93 (173)
..+||++++|+|.+++...+.+..-..-+.+.. ..++|+|+|.||+|+..... .........-..+.+||++|.
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~-~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIG-ADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE 342 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC-CCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence 568999999999999976666655444444433 46699999999999754222 111111111158999999999
Q ss_pred ccHHHHHHHHHHHHhcC
Q psy2792 94 PAIYQAFDHLLTESRGG 110 (173)
Q Consensus 94 ~~v~~lf~~l~~~i~~~ 110 (173)
|++.|+..|...+...
T Consensus 343 -gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 343 -GLDLLRERIIELLSGL 358 (411)
T ss_pred -CHHHHHHHHHHHhhhc
Confidence 9999999999888753
No 225
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.71 E-value=1.3e-07 Score=77.07 Aligned_cols=94 Identities=21% Similarity=0.140 Sum_probs=64.8
Q ss_pred CCCCCCc-----------cHhhhcccCcEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC
Q psy2792 2 TIGLTEG-----------TLTAMICWADGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68 (173)
Q Consensus 2 TaG~e~~-----------~~~~y~~~ad~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v 68 (173)
|+|.+.. .+..-+..||++|||+|...--+ -+.+..| ++. .+.|+|||+||+|-..
T Consensus 58 TgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~---Lr~----~~kpviLvvNK~D~~~---- 126 (444)
T COG1160 58 TGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKI---LRR----SKKPVILVVNKIDNLK---- 126 (444)
T ss_pred CCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH---HHh----cCCCEEEEEEcccCch----
Confidence 8888851 34456889999999999876211 1222233 222 4689999999999642
Q ss_pred CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.+....-...+|+ +.+.+||..|. |+.+|.+.++..+.
T Consensus 127 -~e~~~~efyslG~g~~~~ISA~Hg~-Gi~dLld~v~~~l~ 165 (444)
T COG1160 127 -AEELAYEFYSLGFGEPVPISAEHGR-GIGDLLDAVLELLP 165 (444)
T ss_pred -hhhhHHHHHhcCCCCceEeehhhcc-CHHHHHHHHHhhcC
Confidence 2222222234554 48999999999 99999999999874
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.69 E-value=6.9e-08 Score=72.46 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=43.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|||++++ ....++..+|++|+|||+++..++.. ..|+..+.. .++|+++|+||+|+.
T Consensus 78 tpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 78 TPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 8999875 67788999999999999987665543 344444433 348999999999974
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.69 E-value=1.5e-07 Score=71.40 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=60.0
Q ss_pred CCCCCCccHhhh--c--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHH
Q psy2792 2 TIGLTEGTLTAM--I--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRS 75 (173)
Q Consensus 2 TaG~e~~~~~~y--~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~ 75 (173)
|||.+++..... + ..+|++++|+|+..... .....++..+.. .++|+++|.||+|+.+...+. .++...
T Consensus 91 tpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~~~~l~~ 165 (224)
T cd04165 91 LAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANILQETLKDLKR 165 (224)
T ss_pred CCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHHHHHHHHHHHH
Confidence 788877532222 3 26899999999876432 222334444444 358999999999985432211 111122
Q ss_pred Hhhh--------------------------cCCeEEEEcccCCcccHHHHHHHHH
Q psy2792 76 TAVK--------------------------YNCTFHEVSVADNSPAIYQAFDHLL 104 (173)
Q Consensus 76 ~~~~--------------------------~~~~~~e~Sak~g~~~v~~lf~~l~ 104 (173)
+... ...++|.+||.+|. |++++...|.
T Consensus 166 ~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~-Gi~~L~~~L~ 219 (224)
T cd04165 166 ILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE-GLDLLHAFLN 219 (224)
T ss_pred HhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc-CHHHHHHHHH
Confidence 2211 12478999999999 9999987664
No 228
>PRK10218 GTP-binding protein; Provisional
Probab=98.68 E-value=1.5e-07 Score=80.67 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=70.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~ 78 (173)
|+|+.++ .+..+++.+|++|+|+|+++... .....++..+.. .++|+++|.||+|+...+.. ..++...+..
T Consensus 75 TPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~ 149 (607)
T PRK10218 75 TPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFV 149 (607)
T ss_pred CCCcchhHHHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHh
Confidence 8999885 77889999999999999987422 222333344433 35899999999998643211 0122223221
Q ss_pred -------hcCCeEEEEcccCCcc---------cHHHHHHHHHHHHhcC
Q psy2792 79 -------KYNCTFHEVSVADNSP---------AIYQAFDHLLTESRGG 110 (173)
Q Consensus 79 -------~~~~~~~e~Sak~g~~---------~v~~lf~~l~~~i~~~ 110 (173)
...++++.+||++|.. ++..+|+.|+..+...
T Consensus 150 ~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 150 NLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 1346789999999971 3788888888877643
No 229
>PRK13796 GTPase YqeH; Provisional
Probab=98.67 E-value=1.4e-07 Score=76.37 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=60.5
Q ss_pred cccCc-EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC---eEE
Q psy2792 14 ICWAD-GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC---TFH 85 (173)
Q Consensus 14 ~~~ad-~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~---~~~ 85 (173)
+..+| .|++|+|+.|.. ..|...+.+.. .+.|+++|+||+||.. ..+..+.... +++..++ .++
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 45566 899999997743 34666666654 4679999999999964 2333333333 3555565 579
Q ss_pred EEcccCCcccHHHHHHHHHHH
Q psy2792 86 EVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.+||+++. |++++++.|.+.
T Consensus 138 ~vSAk~g~-gI~eL~~~I~~~ 157 (365)
T PRK13796 138 LISAQKGH-GIDELLEAIEKY 157 (365)
T ss_pred EEECCCCC-CHHHHHHHHHHh
Confidence 99999999 999999999765
No 230
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.67 E-value=3.2e-07 Score=70.16 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=43.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|+.++ ....+++.+|++|+|+|.++.... ....|+..+.. .++|+++|+||+|+.
T Consensus 71 TPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 71 TPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred CCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence 8999874 667889999999999999885433 23445555544 358999999999985
No 231
>KOG1489|consensus
Probab=98.67 E-value=1.6e-07 Score=73.49 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=68.2
Q ss_pred ccHhhh---cccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792 8 GTLTAM---ICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80 (173)
Q Consensus 8 ~~~~~y---~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~ 80 (173)
++-..| +..|+.++||+|++.. ..++++.....++..+.. ..+.|.++|+||+|+++.. .....++++.+
T Consensus 263 GlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~l 339 (366)
T KOG1489|consen 263 GLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRL 339 (366)
T ss_pred cccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHc
Confidence 344444 5579999999999998 778887776666665542 2578999999999985211 12235566655
Q ss_pred CC-eEEEEcccCCcccHHHHHHHHHH
Q psy2792 81 NC-TFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 81 ~~-~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
.- .++++||+.++ +++++...|-.
T Consensus 340 q~~~V~pvsA~~~e-gl~~ll~~lr~ 364 (366)
T KOG1489|consen 340 QNPHVVPVSAKSGE-GLEELLNGLRE 364 (366)
T ss_pred CCCcEEEeeecccc-chHHHHHHHhh
Confidence 43 48999999999 99999887654
No 232
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.64 E-value=3.7e-08 Score=74.30 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=53.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhh---H----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCC-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKES---F----DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVD- 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s---~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~- 69 (173)
|+|+.++ ....++..+|++|+|+|+++... | +....|. .... . ...|+|+|+||+|+... ..-.
T Consensus 84 tpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 84 APGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART-L--GVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred CCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH-c--CCCeEEEEEEccccccccccHHHH
Confidence 7887653 23344677999999999998421 1 1112221 1222 1 23689999999998631 0000
Q ss_pred ---HHHHHHHhhhcC-----CeEEEEcccCCcccHH
Q psy2792 70 ---ESLGRSTAVKYN-----CTFHEVSVADNSPAIY 97 (173)
Q Consensus 70 ---~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~ 97 (173)
.++...+....+ +.++.|||++|. |++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~-gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGD-NLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCC-CCC
Confidence 112222233333 569999999999 987
No 233
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.64 E-value=1.3e-08 Score=69.27 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=58.3
Q ss_pred HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792 10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV 89 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 89 (173)
...++++++++++||+.++.++++.+ |...+.... ..++|+++++||.|+.+...+..+++ ..|+++|+
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~ 108 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSA 108 (124)
T ss_pred cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhC
Confidence 46688999999999999999999766 887776654 35789999999999854334443332 34668899
Q ss_pred cCCcccHH
Q psy2792 90 ADNSPAIY 97 (173)
Q Consensus 90 k~g~~~v~ 97 (173)
+++. |+.
T Consensus 109 ~~~~-~~~ 115 (124)
T smart00010 109 KTPE-EGE 115 (124)
T ss_pred CCcc-hhh
Confidence 9999 874
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.60 E-value=1.5e-07 Score=78.13 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=59.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFD-------YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD-- 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~-- 69 (173)
|||++++ ....++..+|++|+|+|+++ ..|+ .....+..+.. .++| +|+|+||+|+.+. ..+
T Consensus 92 tPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~-~~~~~ 165 (447)
T PLN00043 92 APGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTP-KYSKA 165 (447)
T ss_pred CCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCch-hhhHH
Confidence 7898886 45567899999999999986 3343 22222222222 3464 7889999997521 111
Q ss_pred -----HHHHHHHhhhcC-----CeEEEEcccCCcccHHH
Q psy2792 70 -----ESLGRSTAVKYN-----CTFHEVSVADNSPAIYQ 98 (173)
Q Consensus 70 -----~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~ 98 (173)
.++...++...| +.|+++||++|+ |+.+
T Consensus 166 ~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~-ni~~ 203 (447)
T PLN00043 166 RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD-NMIE 203 (447)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeccccc-cccc
Confidence 234555666655 569999999999 9854
No 235
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=6.1e-07 Score=74.40 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=63.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|||.+-+ |+..=..=+|++|||+|++| |++.+.+.. ++ ..++|++++.||+|.++. .+.....-
T Consensus 62 TPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak----~a~vP~iVAiNKiDk~~~---np~~v~~e 130 (509)
T COG0532 62 TPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AK----AAGVPIVVAINKIDKPEA---NPDKVKQE 130 (509)
T ss_pred CCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HH----HCCCCEEEEEecccCCCC---CHHHHHHH
Confidence 7888654 44444566899999999998 455443321 22 257999999999998732 22222221
Q ss_pred -------hhhcC--CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 77 -------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 77 -------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.+.++ ..++.+||++|+ |+.+|+..+.-.
T Consensus 131 l~~~gl~~E~~gg~v~~VpvSA~tg~-Gi~eLL~~ill~ 168 (509)
T COG0532 131 LQEYGLVPEEWGGDVIFVPVSAKTGE-GIDELLELILLL 168 (509)
T ss_pred HHHcCCCHhhcCCceEEEEeeccCCC-CHHHHHHHHHHH
Confidence 22333 558999999999 999999887643
No 236
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.57 E-value=8.3e-07 Score=72.52 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=69.4
Q ss_pred CCCCCCc-------------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC
Q psy2792 2 TIGLTEG-------------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68 (173)
Q Consensus 2 TaG~e~~-------------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v 68 (173)
|||.++. .+..-+..||++++|.|.+.+-+-++ ......+.+ .+.++|+|.||.|+.+....
T Consensus 233 TAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~----~g~~~vIvvNKWDl~~~~~~ 307 (444)
T COG1160 233 TAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEE----AGRGIVIVVNKWDLVEEDEA 307 (444)
T ss_pred CCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH----cCCCeEEEEEccccCCchhh
Confidence 8898871 33445788999999999998754332 233344444 45899999999998765333
Q ss_pred CHHHHHHH----hhhc-CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 69 DESLGRST----AVKY-NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 69 ~~~~~~~~----~~~~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++.... .... ..+.+.+||++|. ++.++|+.+......
T Consensus 308 ~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~-~i~~l~~~i~~~~~~ 352 (444)
T COG1160 308 TMEEFKKKLRRKLPFLDFAPIVFISALTGQ-GLDKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHHHHHhccccCCeEEEEEecCCC-ChHHHHHHHHHHHHH
Confidence 33333222 2222 2568999999999 999999988765443
No 237
>PRK13768 GTPase; Provisional
Probab=98.57 E-value=3.6e-07 Score=70.49 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=57.5
Q ss_pred CcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-------------------
Q psy2792 17 ADGCIIVYSLIDKESFDYA--VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS------------------- 75 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~------------------- 75 (173)
++++++|+|........+. ..|+....... .++|+++|+||+|+.+..+. +....
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~ 204 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQ 204 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchH
Confidence 8999999999654322222 22333333222 46999999999998654321 11111
Q ss_pred ---------HhhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 ---------TAVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ---------~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.....+ ..++++||+++. |++++.++|.+.+..
T Consensus 205 ~~~~~~~~~~i~~~~~~~~vi~iSa~~~~-gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 205 GLLSLELLRALEETGLPVRVIPVSAKTGE-GFDELYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEECCCCc-CHHHHHHHHHHHcCC
Confidence 111223 568999999999 999999999887754
No 238
>KOG0462|consensus
Probab=98.56 E-value=4.3e-07 Score=75.51 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=69.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~ 78 (173)
|+|.-++ =...-+.-||++|+|+|.+.----+.+..++..+. .+..+|.|.||+|++..+.- -..+...+..
T Consensus 132 TPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~ 206 (650)
T KOG0462|consen 132 TPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFD 206 (650)
T ss_pred CCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhc
Confidence 8888884 33445778999999999986322222223222222 45789999999999864320 0112233333
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
....+++.+|||+|. |++++++.|++.+....
T Consensus 207 ~~~~~~i~vSAK~G~-~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 207 IPPAEVIYVSAKTGL-NVEELLEAIIRRVPPPK 238 (650)
T ss_pred CCccceEEEEeccCc-cHHHHHHHHHhhCCCCC
Confidence 334568999999999 99999999999887533
No 239
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.56 E-value=6.7e-07 Score=71.18 Aligned_cols=107 Identities=17% Similarity=0.086 Sum_probs=73.4
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC----
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL---- 65 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---- 65 (173)
++||+. .+|.+||.+++++|||+|+++. ..+.+....++.+.....-.++|++|++||.|+-.+
T Consensus 168 vgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~ 247 (317)
T cd00066 168 VGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKK 247 (317)
T ss_pred CCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcC
Confidence 578765 4899999999999999999974 345555555555555432367999999999996311
Q ss_pred ------------ccCCHHHHHHHhhh----------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 66 ------------RQVDESLGRSTAVK----------YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 66 ------------~~v~~~~~~~~~~~----------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..-+.+.+..+... ..+.+..++|.+-. ++..+|..+.+.|..
T Consensus 248 ~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~-~i~~vf~~v~~~i~~ 312 (317)
T cd00066 248 SPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTE-NIRFVFDAVKDIILQ 312 (317)
T ss_pred CCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchH-HHHHHHHHHHHHHHH
Confidence 01223333333211 12445678888888 999999999888775
No 240
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.55 E-value=4.2e-07 Score=70.98 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=60.4
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
...+..||++|+|+|..++.+.++ .++.++. .+.|+|+|.||+|+.+.... ... ..+....+..++.+||+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~-~~~-~~~~~~~~~~vi~iSa~ 86 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT-KQW-LKYFEEKGIKALAINAK 86 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH-HHH-HHHHHHcCCeEEEEECC
Confidence 456889999999999987654322 2222222 24799999999998532111 111 11223345678999999
Q ss_pred CCcccHHHHHHHHHHHHhc
Q psy2792 91 DNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 91 ~g~~~v~~lf~~l~~~i~~ 109 (173)
++. |++++.+.+.+.+.+
T Consensus 87 ~~~-gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 87 KGK-GVKKIIKAAKKLLKE 104 (276)
T ss_pred Ccc-cHHHHHHHHHHHHHH
Confidence 999 999999988887754
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.53 E-value=4.7e-07 Score=68.55 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC-CCccCCHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE-HLRQVDESL 72 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~ 72 (173)
|||++++ ....+++.+|++|+|||+++..+......| ..+.. .++|+|+|+||+|+. .+..++.++
T Consensus 80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~----~~~p~ilviNKiD~~~~e~~~~~~~ 148 (222)
T cd01885 80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK----ERVKPVLVINKIDRLILELKLSPEE 148 (222)
T ss_pred CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCCcchhhhcCCHHH
Confidence 8999885 677889999999999999986555432222 22222 358999999999975 233344443
No 242
>PRK01889 GTPase RsgA; Reviewed
Probab=98.53 E-value=5.1e-07 Score=72.97 Aligned_cols=83 Identities=17% Similarity=0.033 Sum_probs=59.2
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-hcCCeEEEEcccCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV-KYNCTFHEVSVADN 92 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sak~g 92 (173)
..|+|.+++|+++...-+...++.++..+.. .+++.+||.||+||.+.. .+....+.. ..++.++.+|++++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 6899999999999644344556666665555 457889999999996431 111222222 34678999999999
Q ss_pred cccHHHHHHHHH
Q psy2792 93 SPAIYQAFDHLL 104 (173)
Q Consensus 93 ~~~v~~lf~~l~ 104 (173)
. |+++|..+|.
T Consensus 183 ~-gl~~L~~~L~ 193 (356)
T PRK01889 183 E-GLDVLAAWLS 193 (356)
T ss_pred c-cHHHHHHHhh
Confidence 9 9999888774
No 243
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.53 E-value=4.6e-07 Score=64.23 Aligned_cols=90 Identities=8% Similarity=-0.010 Sum_probs=57.0
Q ss_pred cHhhhcc---cCcEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhh--h
Q psy2792 9 TLTAMIC---WADGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAV--K 79 (173)
Q Consensus 9 ~~~~y~~---~ad~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~--~ 79 (173)
+...|+. +++++++++|.++..+ ...+..|+.. .+.|+++|+||+|+....... ........+ .
T Consensus 71 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~ 143 (170)
T cd01876 71 LIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFE 143 (170)
T ss_pred HHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence 3344554 4578999999986532 2223344432 248999999999985322111 111222222 2
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
....++++||+++. ++.+++++|.+.
T Consensus 144 ~~~~~~~~Sa~~~~-~~~~l~~~l~~~ 169 (170)
T cd01876 144 IDPPIILFSSLKGQ-GIDELRALIEKW 169 (170)
T ss_pred CCCceEEEecCCCC-CHHHHHHHHHHh
Confidence 34678999999999 999999999864
No 244
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.52 E-value=3.9e-07 Score=64.06 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=59.3
Q ss_pred cccCcEEEEEEeCCChhh-HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCe-EEEEcccC
Q psy2792 14 ICWADGCIIVYSLIDKES-FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCT-FHEVSVAD 91 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~ 91 (173)
-.+||+|++|.|.+++.+ |. ..+... -+.|+|=|.||+|+... ....+.+..+.+..|+. .|++|+.+
T Consensus 61 a~dad~V~ll~dat~~~~~~p------P~fa~~---f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFP------PGFASM---FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred HhhCCEEEEEecCCCCCccCC------chhhcc---cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 448999999999998753 21 112221 34799999999999732 22456677777777765 79999999
Q ss_pred CcccHHHHHHHHH
Q psy2792 92 NSPAIYQAFDHLL 104 (173)
Q Consensus 92 g~~~v~~lf~~l~ 104 (173)
|+ ||++|.++|-
T Consensus 131 ~e-Gi~eL~~~L~ 142 (143)
T PF10662_consen 131 GE-GIEELKDYLE 142 (143)
T ss_pred Cc-CHHHHHHHHh
Confidence 99 9999998874
No 245
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.51 E-value=4.6e-07 Score=67.46 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=53.4
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE--EEEEeCCCCCCCccCCHHHHHHHhhh--cCCeEEEEcccCC
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV--MLLANKLDLEHLRQVDESLGRSTAVK--YNCTFHEVSVADN 92 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi--ilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~g 92 (173)
+|.+|.|+|+++.++... .+. ..+.. ++|+||+|+.+......+...+.... .+.+++++||++|
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g 181 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTK 181 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 688999999987554221 111 12334 78999999974212222333333333 3577999999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy2792 93 SPAIYQAFDHLLTESR 108 (173)
Q Consensus 93 ~~~v~~lf~~l~~~i~ 108 (173)
. |++++|++|.+.+.
T Consensus 182 ~-gi~el~~~i~~~~~ 196 (199)
T TIGR00101 182 E-GLDTVIDWIEHYAL 196 (199)
T ss_pred C-CHHHHHHHHHhhcC
Confidence 9 99999999987654
No 246
>PRK12736 elongation factor Tu; Reviewed
Probab=98.50 E-value=5.2e-07 Score=73.87 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=61.3
Q ss_pred CCCCCCccHhh--hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792 2 TIGLTEGTLTA--MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS 75 (173)
Q Consensus 2 TaG~e~~~~~~--y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~ 75 (173)
|||.++++... -+..+|++++|+|.++... .....++..+.. .++| +|+|.||+|+.+..+.. .++...
T Consensus 82 tPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 78887653222 2457899999999986311 111222233333 3477 67899999986432221 123344
Q ss_pred HhhhcC-----CeEEEEcccCCcc-------cHHHHHHHHHHHHh
Q psy2792 76 TAVKYN-----CTFHEVSVADNSP-------AIYQAFDHLLTESR 108 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g~~-------~v~~lf~~l~~~i~ 108 (173)
+....+ ++++.+||++|.. ++..+++.|...+.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 444444 4689999999820 46777777776654
No 247
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=1.4e-06 Score=71.53 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=69.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|.-++ =...-+.-|.++|+|+|.+.--.-+.+.+.+--+. .+..+|-|.||+||+.... +....+...-
T Consensus 83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp--ervk~eIe~~ 155 (603)
T COG0481 83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP--ERVKQEIEDI 155 (603)
T ss_pred CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH--HHHHHHHHHH
Confidence 7888774 22334678999999999987422233333333332 4678999999999985321 2233344444
Q ss_pred cCCe---EEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 80 YNCT---FHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 80 ~~~~---~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.|+. .+.+|||+|. ||+++++.|++.+....
T Consensus 156 iGid~~dav~~SAKtG~-gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 156 IGIDASDAVLVSAKTGI-GIEDVLEAIVEKIPPPK 189 (603)
T ss_pred hCCCcchheeEecccCC-CHHHHHHHHHhhCCCCC
Confidence 5543 7899999999 99999999999887633
No 248
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.46 E-value=8.3e-07 Score=70.13 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=67.7
Q ss_pred cccCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE-Ec
Q psy2792 14 ICWADGCIIVYSLIDKE---SFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE-VS 88 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~---s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e-~S 88 (173)
+..|.++++|+|++..+ ..++......++..+.. -.+.|.+||+||+|+....+-.......+.+..++..+. +|
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence 55789999999998654 36666666677776642 257899999999996543322222333444444544222 99
Q ss_pred ccCCcccHHHHHHHHHHHHhcCC
Q psy2792 89 VADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
|.++. |++++...+.+.+.+..
T Consensus 315 a~t~~-g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTRE-GLDELLRALAELLEETK 336 (369)
T ss_pred hhccc-CHHHHHHHHHHHHHHhh
Confidence 99999 99999999988877654
No 249
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.45 E-value=1.3e-06 Score=64.86 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=54.4
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS 75 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~ 75 (173)
|+|..+++ ...-+..+|++++|+|.+..-. ......+..+.. .++| +|+|.||+|+....+.. .++...
T Consensus 72 tPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~ 146 (195)
T cd01884 72 CPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRE 146 (195)
T ss_pred CcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHH
Confidence 67776642 3344778999999999976321 112223333433 3466 78999999985322211 123334
Q ss_pred HhhhcC-----CeEEEEcccCCcccH
Q psy2792 76 TAVKYN-----CTFHEVSVADNSPAI 96 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g~~~v 96 (173)
+....+ ++++.+||++|. |+
T Consensus 147 ~l~~~g~~~~~v~iipiSa~~g~-n~ 171 (195)
T cd01884 147 LLSKYGFDGDNTPIVRGSALKAL-EG 171 (195)
T ss_pred HHHHhcccccCCeEEEeeCcccc-CC
Confidence 444433 569999999999 75
No 250
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.44 E-value=1.4e-06 Score=72.52 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=62.8
Q ss_pred CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792 2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~ 77 (173)
|+|.++++.. .-+..+|++++|+|.++...-.+....+..+.. . .-.++|+|.||+|+.+...+. .++...+.
T Consensus 124 tPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-l--gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l 200 (460)
T PTZ00327 124 CPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-M--KLKHIIILQNKIDLVKEAQAQDQYEEIRNFV 200 (460)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-c--CCCcEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 5676654332 336689999999999863111111122222222 1 224689999999986422111 12222222
Q ss_pred hh---cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 VK---YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.. .+.+++.+||++|. |++.|++.|.+.+..
T Consensus 201 ~~~~~~~~~iipVSA~~G~-nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 201 KGTIADNAPIIPISAQLKY-NIDVVLEYICTQIPI 234 (460)
T ss_pred HhhccCCCeEEEeeCCCCC-CHHHHHHHHHhhCCC
Confidence 22 35679999999999 999999999875543
No 251
>KOG0077|consensus
Probab=98.44 E-value=4.7e-07 Score=64.55 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=70.1
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH------hhh---
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST------AVK--- 79 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~------~~~--- 79 (173)
.+..||-.+|++++.+|+.|.+.|.+....++.+........+|+++.+||+|.+.. +++++.... +..
T Consensus 80 ~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~ 157 (193)
T KOG0077|consen 80 VWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGK 157 (193)
T ss_pred HHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhccccc
Confidence 678899999999999999999999988887777665544478999999999998743 344443221 111
Q ss_pred -----cC---CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 -----YN---CTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 -----~~---~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.+ +..|.||...+. +.-+.|.|+...
T Consensus 158 v~~~~~~~rp~evfmcsi~~~~-gy~e~fkwl~qy 191 (193)
T KOG0077|consen 158 VNLTDSNVRPLEVFMCSIVRKM-GYGEGFKWLSQY 191 (193)
T ss_pred ccccCCCCCeEEEEEEEEEccC-ccceeeeehhhh
Confidence 01 346888888888 777888877653
No 252
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=1.1e-06 Score=69.04 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=60.5
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
...+..||++|+|+|..++.+.+. .++.++. .+.|+++|.||+|+.+... .+....+....+..++.+||+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~ 89 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAK 89 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence 456889999999999987654322 2232222 2579999999999853211 111122223345678999999
Q ss_pred CCcccHHHHHHHHHHHHhc
Q psy2792 91 DNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 91 ~g~~~v~~lf~~l~~~i~~ 109 (173)
++. |++++...+...+.+
T Consensus 90 ~~~-gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 90 KGQ-GVKKILKAAKKLLKE 107 (287)
T ss_pred Ccc-cHHHHHHHHHHHHHH
Confidence 999 999999988877654
No 253
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.41 E-value=4.5e-06 Score=67.13 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-----
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL----- 65 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~----- 65 (173)
+||.. .+|.+||.+++++|||+|+++. ..+++....++.+.....-.++|++|++||.|+..+
T Consensus 192 gGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~ 271 (342)
T smart00275 192 GGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKV 271 (342)
T ss_pred CCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCC
Confidence 56654 4899999999999999999973 345555555566655433367999999999997321
Q ss_pred ----------ccCCHHHHHHHhh-----h------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 66 ----------RQVDESLGRSTAV-----K------YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 66 ----------~~v~~~~~~~~~~-----~------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...+.+.+..+.. . ..+.++.++|.+-. ++..+|+.+...|..
T Consensus 272 ~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~-~~~~v~~~v~~~I~~ 335 (342)
T smart00275 272 PLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTR-NIRVVFDAVKDIILQ 335 (342)
T ss_pred chhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccH-HHHHHHHHHHHHHHH
Confidence 0012233333221 1 12345678888888 999999998887765
No 254
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.39 E-value=1.8e-06 Score=73.09 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|||++++ ....+++.+|++|+|+|.++.-. .....++..... .++|+++++||+|+.
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL----RDTPIFTFINKLDRD 144 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh----cCCCEEEEEECCccc
Confidence 8999875 45678999999999999987421 122333333322 569999999999974
No 255
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.38 E-value=9.7e-07 Score=72.29 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCCCCCccHhh--hcccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCC---HHH
Q psy2792 2 TIGLTEGTLTA--MICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVD---ESL 72 (173)
Q Consensus 2 TaG~e~~~~~~--y~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~---~~~ 72 (173)
|||+++++... -..++|++++|+|+++. ++++ .+..+.. .++|.+ +|.||+|+.+..+.. .++
T Consensus 82 tpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e----~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~ 153 (394)
T TIGR00485 82 CPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTRE----HILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEME 153 (394)
T ss_pred CCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH----HHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence 88997753222 24467999999999873 3332 2222333 246754 689999986432211 123
Q ss_pred HHHHhhhcC-----CeEEEEcccCCc
Q psy2792 73 GRSTAVKYN-----CTFHEVSVADNS 93 (173)
Q Consensus 73 ~~~~~~~~~-----~~~~e~Sak~g~ 93 (173)
...++...+ ++++.+||++|.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHhcCCCccCccEEECcccccc
Confidence 455555554 679999999874
No 256
>PRK13351 elongation factor G; Reviewed
Probab=98.36 E-value=2.9e-06 Score=74.12 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|+.++ .+..+++.+|++|+|+|.++...+.....|. .+.. .++|+++|+||+|+..
T Consensus 80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCCC
Confidence 8999874 6788999999999999999876666555553 3333 4689999999999853
No 257
>KOG1423|consensus
Probab=98.31 E-value=3.3e-06 Score=65.97 Aligned_cols=102 Identities=17% Similarity=0.123 Sum_probs=68.2
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc-------------cCC---HHHHHH
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR-------------QVD---ESLGRS 75 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-------------~v~---~~~~~~ 75 (173)
..+.+||++++|+|+++....-+ ...+..+..+ .++|-|||.||+|....+ +++ .+....
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 34678999999999997432211 2234445554 469999999999974321 111 111111
Q ss_pred Hhh---------hcCC----eEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcccc
Q psy2792 76 TAV---------KYNC----TFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKI 118 (173)
Q Consensus 76 ~~~---------~~~~----~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~ 118 (173)
+.. ..|+ .+|.+||++|. ||+++-++|..++..+++.++...
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~-GikdlkqyLmsqa~~gpW~y~a~i 281 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGE-GIKDLKQYLMSQAPPGPWKYPADI 281 (379)
T ss_pred hccCCcccccccccCcccceeEEEEeccccc-CHHHHHHHHHhcCCCCCCCCCccc
Confidence 211 1122 38999999999 999999999999999998886543
No 258
>PRK12735 elongation factor Tu; Reviewed
Probab=98.31 E-value=2.7e-06 Score=69.78 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=61.3
Q ss_pred CCCCCCccH--hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCC---HHHHHH
Q psy2792 2 TIGLTEGTL--TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVD---ESLGRS 75 (173)
Q Consensus 2 TaG~e~~~~--~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~---~~~~~~ 75 (173)
|||.++++. ..-+.++|++++|+|+.+... .....++..+.. .++|.+ +|.||+|+.+..+.. ..+...
T Consensus 82 tPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~ 156 (396)
T PRK12735 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (396)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 788866422 233667899999999987321 222233333333 347855 579999986422111 123444
Q ss_pred HhhhcC-----CeEEEEcccCCc---------ccHHHHHHHHHHHHh
Q psy2792 76 TAVKYN-----CTFHEVSVADNS---------PAIYQAFDHLLTESR 108 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g~---------~~v~~lf~~l~~~i~ 108 (173)
+...++ ++++.+||++|. .++..|++.|...+.
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 454443 568999999984 156777777766543
No 259
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=6.1e-06 Score=64.61 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=68.5
Q ss_pred cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 87 (173)
+.+--+.+.|-+|+|+++.+|+ +...+..++-.+.. .++..|||.||+||.+......++........|+..+.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 4444556788899999999986 56666666554443 568888899999997644332234555667789999999
Q ss_pred cccCCcccHHHHHHHHHHH
Q psy2792 88 SVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~~ 106 (173)
|++++. +++++...+...
T Consensus 148 s~~~~~-~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGD-GLEELAELLAGK 165 (301)
T ss_pred cCcCcc-cHHHHHHHhcCC
Confidence 999999 999998877654
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.28 E-value=5.7e-06 Score=65.89 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCCCCCCccCCHHHHHHHhhhc-CCeEEEEcccCCcccHHHHHH-HHHHHHhcCCCCC
Q psy2792 50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKY-NCTFHEVSVADNSPAIYQAFD-HLLTESRGGPPSG 114 (173)
Q Consensus 50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sak~g~~~v~~lf~-~l~~~i~~~~~~~ 114 (173)
..|+|+|+||+|+..... ....+.... ...++.+||+.+. +++++.+ .+.+.+.+.+...
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~-~L~~L~~~~i~~~lPe~~~f~ 275 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAEL-ALRRAAKQGLIKYDPGDSDFE 275 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccc-cHHHHHHhhHHHhCCCCCCce
Confidence 469999999999753221 111222222 4568999999999 9999998 6999888766543
No 261
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.28 E-value=4.4e-06 Score=62.49 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=40.0
Q ss_pred CcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 51 VPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.|.++|+||+|+.+.......+........ ..+++++||++|. |++++|+++.+.
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~-gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGE-GLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCC-CHHHHHHHHHHh
Confidence 577999999999653222233333333333 3779999999999 999999999864
No 262
>KOG1145|consensus
Probab=98.16 E-value=2.8e-05 Score=65.10 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=63.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS- 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~- 75 (173)
|+|..-+ |+..=..-+|++++|+..+| +++.+.+. ... ..++|+|+..||||.++ .+.+....
T Consensus 208 TPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk-------hAk-~A~VpiVvAinKiDkp~---a~pekv~~e 276 (683)
T KOG1145|consen 208 TPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK-------HAK-SANVPIVVAINKIDKPG---ANPEKVKRE 276 (683)
T ss_pred CCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH-------HHH-hcCCCEEEEEeccCCCC---CCHHHHHHH
Confidence 5666543 55555667899999999988 45554332 222 36799999999999763 22333322
Q ss_pred H------hhhcC--CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 76 T------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 76 ~------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+ .+.+| ..++++||++|. |++.|-+.+.-.
T Consensus 277 L~~~gi~~E~~GGdVQvipiSAl~g~-nl~~L~eaill~ 314 (683)
T KOG1145|consen 277 LLSQGIVVEDLGGDVQVIPISALTGE-NLDLLEEAILLL 314 (683)
T ss_pred HHHcCccHHHcCCceeEEEeecccCC-ChHHHHHHHHHH
Confidence 2 23444 568999999999 999998877643
No 263
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.16 E-value=9.2e-06 Score=69.39 Aligned_cols=101 Identities=10% Similarity=0.032 Sum_probs=73.5
Q ss_pred CCCCCCc-cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG-TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~-~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+..+|+ ..+.|+. ..|++|-|.|.++.+. --..--++.+. ++|++++.|++|....+-+. -+...+.+
T Consensus 64 ~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR---nLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~ 135 (653)
T COG0370 64 TAYSEDEKVARDFLLEGKPDLIVNVVDATNLER---NLYLTLQLLEL----GIPMILALNMIDEAKKRGIR-IDIEKLSK 135 (653)
T ss_pred CCCCchHHHHHHHHhcCCCCEEEEEcccchHHH---HHHHHHHHHHc----CCCeEEEeccHhhHHhcCCc-ccHHHHHH
Confidence 5555554 7777765 4699999999998642 12222334443 58999999999986554442 34466778
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.+|++++++||++|. |++++...+.+....+.
T Consensus 136 ~LGvPVv~tvA~~g~-G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 136 LLGVPVVPTVAKRGE-GLEELKRAIIELAESKT 167 (653)
T ss_pred HhCCCEEEEEeecCC-CHHHHHHHHHHhccccc
Confidence 899999999999999 99999999887555433
No 264
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.16 E-value=4.9e-06 Score=68.44 Aligned_cols=92 Identities=15% Similarity=0.033 Sum_probs=54.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC----HHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD----ESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~----~~~~~~ 75 (173)
|||.+++ -...-+..+|++|+|+|......-...+.|. .+... ...++|+|.||+|+.+...-. .++...
T Consensus 87 tPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~---~~~~iivviNK~D~~~~~~~~~~~i~~~~~~ 162 (406)
T TIGR02034 87 TPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL---GIRHVVLAVNKMDLVDYDEEVFENIKKDYLA 162 (406)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc---CCCcEEEEEEecccccchHHHHHHHHHHHHH
Confidence 7888774 2233578999999999987542111111121 12221 223588999999986422110 112222
Q ss_pred HhhhcC---CeEEEEcccCCcccHHH
Q psy2792 76 TAVKYN---CTFHEVSVADNSPAIYQ 98 (173)
Q Consensus 76 ~~~~~~---~~~~e~Sak~g~~~v~~ 98 (173)
+....+ +.++.+||++|. |+++
T Consensus 163 ~~~~~~~~~~~iipiSA~~g~-ni~~ 187 (406)
T TIGR02034 163 FAEQLGFRDVTFIPLSALKGD-NVVS 187 (406)
T ss_pred HHHHcCCCCccEEEeecccCC-CCcc
Confidence 333333 469999999999 9885
No 265
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.15 E-value=1.1e-05 Score=62.77 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=41.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|||++++ ....+++.+|++|+|+|.++... .....|+..... .++|+++++||+|+..
T Consensus 78 TPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~----~~~P~iivvNK~D~~~ 137 (267)
T cd04169 78 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL----RGIPIITFINKLDREG 137 (267)
T ss_pred CCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh----cCCCEEEEEECCccCC
Confidence 8999874 46678899999999999987432 122333333322 4689999999999854
No 266
>PRK12740 elongation factor G; Reviewed
Probab=98.15 E-value=1.7e-05 Score=69.16 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|||..+. .+..++..+|++|+|+|.++.........|. .+.. .++|+++|+||+|+.
T Consensus 67 tPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 67 TPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred CCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence 7888773 5677899999999999998866555444343 3333 458999999999985
No 267
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.13 E-value=4.8e-06 Score=69.76 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=53.8
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH----HHHH
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES----LGRS 75 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~~~ 75 (173)
|||.+++. ...-+..+|++|+|+|.+..-.-.....|. +.... ...++|||.||+|+.+...-..+ +...
T Consensus 114 TPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~ 189 (474)
T PRK05124 114 TPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLT 189 (474)
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHH
Confidence 78987642 222368999999999987632110111111 12111 12478999999998632211111 1222
Q ss_pred Hhhhc----CCeEEEEcccCCcccHHHH
Q psy2792 76 TAVKY----NCTFHEVSVADNSPAIYQA 99 (173)
Q Consensus 76 ~~~~~----~~~~~e~Sak~g~~~v~~l 99 (173)
+.... ...++.+||++|. |+.++
T Consensus 190 ~~~~~~~~~~~~iipvSA~~g~-ni~~~ 216 (474)
T PRK05124 190 FAEQLPGNLDIRFVPLSALEGD-NVVSQ 216 (474)
T ss_pred HHHhcCCCCCceEEEEEeecCC-Ccccc
Confidence 22332 3679999999999 99764
No 268
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.99 E-value=1.9e-05 Score=68.53 Aligned_cols=92 Identities=21% Similarity=0.062 Sum_probs=54.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH----HHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE----SLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~----~~~~~ 75 (173)
|||.+++ ....-+..+|++|+|+|.++... .........+... ...++|||.||+|+.+...-.. .+...
T Consensus 111 tPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~ 186 (632)
T PRK05506 111 TPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFDEIVADYRA 186 (632)
T ss_pred CCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHHHHHHHHHHH
Confidence 7888764 22234789999999999975321 1111111122222 2257889999999863111001 12222
Q ss_pred HhhhcC---CeEEEEcccCCcccHHH
Q psy2792 76 TAVKYN---CTFHEVSVADNSPAIYQ 98 (173)
Q Consensus 76 ~~~~~~---~~~~e~Sak~g~~~v~~ 98 (173)
+....+ ..++.+||++|. |+.+
T Consensus 187 ~~~~~~~~~~~iipiSA~~g~-ni~~ 211 (632)
T PRK05506 187 FAAKLGLHDVTFIPISALKGD-NVVT 211 (632)
T ss_pred HHHHcCCCCccEEEEecccCC-Cccc
Confidence 334444 358999999999 9874
No 269
>CHL00071 tufA elongation factor Tu
Probab=97.98 E-value=3e-05 Score=63.88 Aligned_cols=87 Identities=20% Similarity=0.144 Sum_probs=53.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~ 75 (173)
|||..++ -...-+..+|++++|+|....- .......+..+.. .++| +|+|.||+|+.+..+.. .++...
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~ 156 (409)
T CHL00071 82 CPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRE 156 (409)
T ss_pred CCChHHHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 7887654 2233467899999999997632 1222233333333 3478 77899999986432211 123334
Q ss_pred HhhhcC-----CeEEEEcccCCc
Q psy2792 76 TAVKYN-----CTFHEVSVADNS 93 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g~ 93 (173)
+....+ ++++.+||.+|.
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcc
Confidence 444433 578999999886
No 270
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.97 E-value=9.7e-06 Score=63.16 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=40.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|..++ -...+++.+|++|+|+|..+...-. ....+..+.. .++|+++|.||+|+.+
T Consensus 71 TPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 71 TPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 7888764 5567899999999999997742211 1223333333 4589999999999864
No 271
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.97 E-value=3.7e-05 Score=45.30 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=29.3
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 17 ADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 17 ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
.++|+|++|++..- |.++-...+++++..- .+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 57899999998753 5666666778888765 6899999999998
No 272
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.92 E-value=9.4e-05 Score=54.83 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=60.9
Q ss_pred CCCCCCc--cHhhh-----cccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----C-
Q psy2792 2 TIGLTEG--TLTAM-----ICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----V- 68 (173)
Q Consensus 2 TaG~e~~--~~~~y-----~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v- 68 (173)
|+|..+. ....| +.++|++|+|.|- +|...+ .|+..+... +.|+++|+||+|+..... .
T Consensus 59 tpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~ 130 (197)
T cd04104 59 LPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPR 130 (197)
T ss_pred CCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccc
Confidence 6777641 22333 6789999998542 344443 466666553 479999999999842111 0
Q ss_pred --CHHH----HHHH----hhhcC---CeEEEEccc--CCcccHHHHHHHHHHHHhc
Q psy2792 69 --DESL----GRST----AVKYN---CTFHEVSVA--DNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 69 --~~~~----~~~~----~~~~~---~~~~e~Sak--~g~~~v~~lf~~l~~~i~~ 109 (173)
..++ .... ....+ -.+|-+|+. .+. ++..+.+.+...+.+
T Consensus 131 ~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~-~~~~l~~~~~~~l~~ 185 (197)
T cd04104 131 SFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDY-DFPKLRETLLKDLPA 185 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhc-ChHHHHHHHHHHhhH
Confidence 0111 1111 11212 358999998 578 899999999888876
No 273
>KOG0705|consensus
Probab=97.91 E-value=2.5e-05 Score=65.31 Aligned_cols=101 Identities=15% Similarity=0.352 Sum_probs=80.1
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC--CCccCCHHHHHHHhhhc-CCeEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--HLRQVDESLGRSTAVKY-NCTFH 85 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~ 85 (173)
....|..++|++||||.+.|..+|+.+..+...+..+.....+|+++|+.+.-+. ..+.+.+.++..++.++ .+.||
T Consensus 88 ~~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~ 167 (749)
T KOG0705|consen 88 PDAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYY 167 (749)
T ss_pred chhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCcccee
Confidence 4567888999999999999999999998887777766555789999999985543 23455566666655554 48899
Q ss_pred EEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 86 EVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+++|.+|. +++..|+.++..+...
T Consensus 168 et~atyGl-nv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 168 ETCATYGL-NVERVFQEVAQKIVQL 191 (749)
T ss_pred ecchhhhh-hHHHHHHHHHHHHHHH
Confidence 99999999 9999999998777643
No 274
>PLN03127 Elongation factor Tu; Provisional
Probab=97.91 E-value=7.2e-05 Score=62.28 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=58.0
Q ss_pred CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCH---HHHHH
Q psy2792 2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDE---SLGRS 75 (173)
Q Consensus 2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~ 75 (173)
|||.++++.. .-+..+|++++|+|.++... .+....+..+.. .++| +|+|.||+|+.+..+... .+...
T Consensus 131 tPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~ 205 (447)
T PLN03127 131 CPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRE 205 (447)
T ss_pred CCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHH
Confidence 7898775222 23457999999999876321 122222333333 3578 578899999864222111 12222
Q ss_pred Hhhhc-----CCeEEEEccc---CCccc-------HHHHHHHHHHHHh
Q psy2792 76 TAVKY-----NCTFHEVSVA---DNSPA-------IYQAFDHLLTESR 108 (173)
Q Consensus 76 ~~~~~-----~~~~~e~Sak---~g~~~-------v~~lf~~l~~~i~ 108 (173)
+.... .++++.+||. +|. | +..|++.|...+.
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~-n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGT-NDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCC-CcccccchHHHHHHHHHHhCC
Confidence 33222 2567888775 454 4 6777777776654
No 275
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.91 E-value=0.00014 Score=55.38 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=68.1
Q ss_pred CCCCCc-------cHhhhcccCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCC-
Q psy2792 3 IGLTEG-------TLTAMICWADGCIIVYSLIDKE---SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVD- 69 (173)
Q Consensus 3 aG~e~~-------~~~~y~~~ad~iilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~- 69 (173)
+||... .....+++++++|||||+.+.+ .+..+...+..+.++. +++.+.+...|.|+..+. ...
T Consensus 56 pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~ 133 (232)
T PF04670_consen 56 PGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSEDEREEIF 133 (232)
T ss_dssp -SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HHHHHHHH
T ss_pred CCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHHHHHHHH
Confidence 577652 3466799999999999998433 3444455556666665 889999999999985321 111
Q ss_pred ---HHHHHHHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 70 ---ESLGRSTAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 70 ---~~~~~~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.+.....+...+ +.|+.+|.-+ . .+.++|..++..+..+.
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~-Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 134 RDIQQRIRDELEDLGIEDITFFLTSIWD-E-SLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-TTS-T-HHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHHHhhhccccceEEEeccCcC-c-HHHHHHHHHHHHHcccH
Confidence 112233344445 7799999888 4 69999999999887543
No 276
>PRK00049 elongation factor Tu; Reviewed
Probab=97.89 E-value=5.3e-05 Score=62.19 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCC---HHHHHH
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVD---ESLGRS 75 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~---~~~~~~ 75 (173)
|||..+++ ...-+..+|++++|+|..+... .....++..+.. .++|.+ ++.||+|+.+..+.. ..+...
T Consensus 82 tPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~ 156 (396)
T PRK00049 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (396)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHH
Confidence 78886642 2234678999999999976421 222333344443 347875 589999986422111 112333
Q ss_pred Hhhhc-----CCeEEEEcccCCcc---------cHHHHHHHHHHHH
Q psy2792 76 TAVKY-----NCTFHEVSVADNSP---------AIYQAFDHLLTES 107 (173)
Q Consensus 76 ~~~~~-----~~~~~e~Sak~g~~---------~v~~lf~~l~~~i 107 (173)
+.... .++++.+||+++.. ++..+++.|...+
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 33332 35689999998741 2456666665543
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.88 E-value=2.3e-05 Score=57.43 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCCCCC---ccHhh--hcccCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTE---GTLTA--MICWADGCIIVYSLID-KESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~---~~~~~--y~~~ad~iilv~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~ 64 (173)
++|.++ .+... |..++.+||||.|.+. ...+.++..++..+..... ...+|++|++||.|+..
T Consensus 56 ~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 56 IPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp ETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 467766 24444 7889999999999974 4566777666655554332 36799999999999864
No 278
>KOG1707|consensus
Probab=97.87 E-value=4.6e-05 Score=64.04 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=66.3
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCe-EEEEcccCCc
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCT-FHEVSVADNS 93 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~ 93 (173)
..||++.++||.+++.||+.+...+..... ...+|+++|+.|+|+.+..+...-.-.+++.+++++ .+.+|.++..
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence 679999999999999999987664443322 257999999999999754322222227788888876 5677777543
Q ss_pred ccHHHHHHHHHHHHhc
Q psy2792 94 PAIYQAFDHLLTESRG 109 (173)
Q Consensus 94 ~~v~~lf~~l~~~i~~ 109 (173)
. .++|..|+....-
T Consensus 571 -s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 571 -S-NELFIKLATMAQY 584 (625)
T ss_pred -C-chHHHHHHHhhhC
Confidence 4 7999999987654
No 279
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.87 E-value=6.9e-05 Score=65.64 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=43.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|+.++ ....+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCCEEEEEECCCCCC
Confidence 8999874 567789999999999999875444433333 33333 3589999999999874
No 280
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.81 E-value=0.00023 Score=58.39 Aligned_cols=63 Identities=19% Similarity=0.097 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHH-HHHHHHHHHhcCCCCCccc
Q psy2792 50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQ-AFDHLLTESRGGPPSGIHK 117 (173)
Q Consensus 50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~-lf~~l~~~i~~~~~~~~~~ 117 (173)
..|+|+|+||+|+.... +....+....+..++.+||+.+. ++.+ +.+.+++.+.+.++.++..
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~-~l~~~l~~~i~~~lp~~p~~~~~d 280 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAEL-ALRRAAKAGLIDYIPGDSDFEILG 280 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhh-hHHHHHHHhHHhhCCCCCccCccc
Confidence 47999999999975311 11222222234568999999999 9999 8899999999888877664
No 281
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.80 E-value=7e-05 Score=59.20 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=52.0
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH------HHHHhh---hcCCe
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL------GRSTAV---KYNCT 83 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~------~~~~~~---~~~~~ 83 (173)
.+..+|.++++-+. ++-+++......+ .++|.++|.||+|+.......... ...+.. .+...
T Consensus 144 i~~~aD~i~vv~~~---~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 214 (300)
T TIGR00750 144 IANMADTFVVVTIP---GTGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPP 214 (300)
T ss_pred HHHhhceEEEEecC---CccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCC
Confidence 45667888887443 2334443333333 246779999999986432110000 011111 12235
Q ss_pred EEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 84 FHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 84 ~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++.+||+++. |+++++.+|.+.+.
T Consensus 215 v~~iSA~~g~-Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 215 VLTTSAVEGR-GIDELWDAIEEHKT 238 (300)
T ss_pred EEEEEccCCC-CHHHHHHHHHHHHH
Confidence 8999999999 99999999987643
No 282
>KOG3905|consensus
Probab=97.80 E-value=0.00033 Score=55.50 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=48.2
Q ss_pred CCcEEEEEeCCCCC----CCccCC-------HHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 50 NVPVMLLANKLDLE----HLRQVD-------ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 50 ~~piilv~NK~Dl~----~~~~v~-------~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.+|++||.+|||.. .+.+.. ......||-.+|...|.+|+|+.. |++-++..|+..++-.+
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~K-NidllyKYivhr~yG~~ 293 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETK-NIDLLYKYIVHRSYGFP 293 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccccc-chHHHHHHHHHHhcCcc
Confidence 46999999999972 222221 234567899999999999999999 99999999999887654
No 283
>PLN03126 Elongation factor Tu; Provisional
Probab=97.79 E-value=5.5e-05 Score=63.46 Aligned_cols=87 Identities=18% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792 2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS 75 (173)
Q Consensus 2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~ 75 (173)
|||.++++.. .-+..+|++|+|+|.++... .....++..+.. .++| +|+|.||+|+.+..+.. .++...
T Consensus 151 tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 151 CPGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 6788765333 23567899999999886422 222333344443 3477 78899999986422211 113333
Q ss_pred Hhhhc-----CCeEEEEcccCCc
Q psy2792 76 TAVKY-----NCTFHEVSVADNS 93 (173)
Q Consensus 76 ~~~~~-----~~~~~e~Sak~g~ 93 (173)
+.... .++++.+||.+|.
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccc
Confidence 44433 4668999999885
No 284
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.79 E-value=0.0002 Score=57.30 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=57.1
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhh-
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAV- 78 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~- 78 (173)
|+|....-.. ....||.+++|.+....+....+. ..+.+ +.-++|.||+|+....... ..+......
T Consensus 156 T~Gv~qs~~~-i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l 225 (332)
T PRK09435 156 TVGVGQSETA-VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAAAEYRSALRL 225 (332)
T ss_pred CCCCccchhH-HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHHHHHHHHHhc
Confidence 6666543111 466799999997644433333222 22333 2237999999986432110 111111111
Q ss_pred ------hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 79 ------KYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 79 ------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.+..+++.+||+++. ||+++++.|.+.+.
T Consensus 226 ~~~~~~~w~~pVi~vSA~~g~-GIdeL~~~I~~~~~ 260 (332)
T PRK09435 226 LRPKDPGWQPPVLTCSALEGE-GIDEIWQAIEDHRA 260 (332)
T ss_pred ccccccCCCCCEEEEECCCCC-CHHHHHHHHHHHHH
Confidence 122468999999999 99999999998765
No 285
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.74 E-value=8.3e-05 Score=61.95 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=53.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCC--CccCC-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SF---DYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEH--LRQVD- 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~--~~~v~- 69 (173)
|+|.+++ -...-+..+|++|+|+|.+... .| ......+..+.. -++| +|++.||.|... ..+-.
T Consensus 92 tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~~~~~~~~ 167 (446)
T PTZ00141 92 APGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTVNYSQERY 167 (446)
T ss_pred CCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccchhhHHHH
Confidence 7888775 2233477999999999987631 01 112221222322 3466 678999999531 11000
Q ss_pred ---HHHHHHHhhhcC-----CeEEEEcccCCcccHHH
Q psy2792 70 ---ESLGRSTAVKYN-----CTFHEVSVADNSPAIYQ 98 (173)
Q Consensus 70 ---~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~ 98 (173)
.++...+....+ ++++.+||.+|. |+.+
T Consensus 168 ~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~-ni~~ 203 (446)
T PTZ00141 168 DEIKKEVSAYLKKVGYNPEKVPFIPISGWQGD-NMIE 203 (446)
T ss_pred HHHHHHHHHHHHhcCCCcccceEEEeecccCC-Cccc
Confidence 122333333333 568999999999 9864
No 286
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.73 E-value=0.00012 Score=56.76 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|..++ ....+++.+|++|+|+|.++.........|. .+.. .++|+++|+||+|+.... ..+....+...
T Consensus 71 tPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~----~~~p~iivvNK~D~~~~~--~~~~~~~l~~~ 143 (268)
T cd04170 71 TPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE----AGIPRIIFINKMDRERAD--FDKTLAALQEA 143 (268)
T ss_pred CcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCccCCCC--HHHHHHHHHHH
Confidence 6777663 5677899999999999998865443333342 2332 458999999999986431 12223334344
Q ss_pred cCCe--EEEEcccCCcccHHHHHH
Q psy2792 80 YNCT--FHEVSVADNSPAIYQAFD 101 (173)
Q Consensus 80 ~~~~--~~e~Sak~g~~~v~~lf~ 101 (173)
++.. .+.+...++. ++..+.+
T Consensus 144 ~~~~~~~~~ip~~~~~-~~~~~vd 166 (268)
T cd04170 144 FGRPVVPLQLPIGEGD-DFKGVVD 166 (268)
T ss_pred hCCCeEEEEecccCCC-ceeEEEE
Confidence 4443 3445556655 5444433
No 287
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.72 E-value=0.00019 Score=56.68 Aligned_cols=87 Identities=10% Similarity=0.197 Sum_probs=60.2
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEcccCCc
Q psy2792 17 ADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVSVADNS 93 (173)
Q Consensus 17 ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~ 93 (173)
+++|+|+||.+..- +.+.-...++++.... +.|+++|.||+|+.+...+. ++.......+ .....+++..+.
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~ 322 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATKGC 322 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeeehh
Confidence 67899999998753 5666667778888765 38999999999987544332 2222233333 446788888888
Q ss_pred ccHHHHHHHHHHHHhc
Q psy2792 94 PAIYQAFDHLLTESRG 109 (173)
Q Consensus 94 ~~v~~lf~~l~~~i~~ 109 (173)
+++.+-..+.....+
T Consensus 323 -~~d~~~~~v~~~a~~ 337 (346)
T COG1084 323 -GLDKLREEVRKTALE 337 (346)
T ss_pred -hHHHHHHHHHHHhhc
Confidence 888777777666444
No 288
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.72 E-value=7.8e-05 Score=63.30 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=40.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|+.++ ....+++.+|++|+|+|.++.- ......++..... .++|+++|+||+|+..
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh----cCCCEEEEEECccccC
Confidence 8999774 4566789999999999998731 1122333333322 4689999999999853
No 289
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00023 Score=48.76 Aligned_cols=81 Identities=23% Similarity=0.125 Sum_probs=57.3
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEEcccCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEVSVADN 92 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g 92 (173)
..++|++++|-.+++++|.- -..+.. .-..|+|-|.+|+||.+... .+....|..+-|. ++|++|+.++
T Consensus 62 ~~dadvi~~v~~and~~s~f-----~p~f~~---~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 62 LQDADVIIYVHAANDPESRF-----PPGFLD---IGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred hhccceeeeeecccCccccC-----Cccccc---ccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCc
Confidence 45789999999998876420 011111 12356999999999975333 3445666666674 4899999999
Q ss_pred cccHHHHHHHHHH
Q psy2792 93 SPAIYQAFDHLLT 105 (173)
Q Consensus 93 ~~~v~~lf~~l~~ 105 (173)
. ||++++..|..
T Consensus 132 ~-gv~~l~~~L~~ 143 (148)
T COG4917 132 Q-GVEELVDYLAS 143 (148)
T ss_pred c-cHHHHHHHHHh
Confidence 9 99999998875
No 290
>KOG1191|consensus
Probab=97.66 E-value=8.6e-05 Score=61.40 Aligned_cols=106 Identities=22% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCCCCC---------c--cHhhhcccCcEEEEEEeC--CChhhHHHHHHHHHHHHhhhC-----CCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTE---------G--TLTAMICWADGCIIVYSL--IDKESFDYAVSTLQNLQRHRA-----VNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~---------~--~~~~y~~~ad~iilv~d~--~~~~s~~~~~~~~~~i~~~~~-----~~~~piilv~NK~Dl~ 63 (173)
|||.++ + ....-+..||++++|+|. ++.++-..+...++....-.. ...-++++|.||+|+.
T Consensus 323 TAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 323 TAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred ccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 899887 2 334558899999999999 443333333333333322110 1336899999999986
Q ss_pred CC-ccCCHHHHHHHhhhcC---C-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 64 HL-RQVDESLGRSTAVKYN---C-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 64 ~~-~~v~~~~~~~~~~~~~---~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.. .+....- ..+....+ . ...++|+++++ ++++|...+.+.+..
T Consensus 403 s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~~tke-g~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 403 SKIPEMTKIP-VVYPSAEGRSVFPIVVEVSCTTKE-GCERLSTALLNIVER 451 (531)
T ss_pred CccccccCCc-eeccccccCcccceEEEeeechhh-hHHHHHHHHHHHHHH
Confidence 43 1211100 11111111 2 25679999999 999999999887654
No 291
>KOG0090|consensus
Probab=97.64 E-value=0.00027 Score=52.67 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=61.7
Q ss_pred CCCCC--ccHhhhcc---cCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhh--CCCCCcEEEEEeCCCCCCCc--------
Q psy2792 3 IGLTE--GTLTAMIC---WADGCIIVYSLID-KESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLR-------- 66 (173)
Q Consensus 3 aG~e~--~~~~~y~~---~ad~iilv~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piilv~NK~Dl~~~~-------- 66 (173)
+|.++ .....|+. .+-++|||+|..- .....++..++-.+.-.. ....+|++++.||.|+...+
T Consensus 90 PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~ 169 (238)
T KOG0090|consen 90 PGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQ 169 (238)
T ss_pred CCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHH
Confidence 45555 23344555 7999999999754 334555555555544333 13678999999999983211
Q ss_pred ------------c----CCHHH----------HHH--H--hhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 67 ------------Q----VDESL----------GRS--T--AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 67 ------------~----v~~~~----------~~~--~--~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
. +..+. +.. | +....+.|.++|++++ +++++-+||.+.
T Consensus 170 LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~--~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 170 LEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG--EIDQWESWIREA 237 (238)
T ss_pred HHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC--ChHHHHHHHHHh
Confidence 0 11100 111 1 1223456889999987 489999998764
No 292
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.60 E-value=0.00069 Score=53.63 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=40.1
Q ss_pred CcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 51 VPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+|.++|.||+|+.. .++...+.+.. .++.+||+.+. |+++|.+.|.+.+--
T Consensus 240 ~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~-nld~L~e~i~~~L~l 290 (365)
T COG1163 240 KPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGI-NLDELKERIWDVLGL 290 (365)
T ss_pred eeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCC-CHHHHHHHHHHhhCe
Confidence 59999999999864 34455555443 68999999999 999999999887643
No 293
>PRK12739 elongation factor G; Reviewed
Probab=97.59 E-value=0.00046 Score=60.57 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|..++ -....++.+|++|+|+|.++.-.-... ..+..+.. .++|+|++.||+|+.
T Consensus 80 TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 80 TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRI 138 (691)
T ss_pred CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCC
Confidence 7787663 455678999999999999875322222 22223333 458999999999986
No 294
>KOG1490|consensus
Probab=97.55 E-value=0.00049 Score=57.30 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=66.4
Q ss_pred cEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH---HHHHhhhcCCeEEEEcccCC
Q psy2792 18 DGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL---GRSTAVKYNCTFHEVSVADN 92 (173)
Q Consensus 18 d~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~Sak~g 92 (173)
.+|+|+.|++..- |.+.--..+..|.... .+.|+|+|.||+|+-....++++. ...+...-++.++++|+.+.
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 3688899998742 5555556677777665 688999999999987666665543 23334444588999999999
Q ss_pred cccHHHHHHHHHHHHhcC
Q psy2792 93 SPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 93 ~~~v~~lf~~l~~~i~~~ 110 (173)
+ ||-++-...++.++..
T Consensus 327 e-gVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 327 E-GVMDVRTTACEALLAA 343 (620)
T ss_pred h-ceeeHHHHHHHHHHHH
Confidence 9 9998888888777653
No 295
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00034 Score=55.97 Aligned_cols=89 Identities=17% Similarity=0.065 Sum_probs=55.6
Q ss_pred CCCCCCccHhhh--cccCcEEEEEEeCCChhhHHHHHH--HHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH----HH
Q psy2792 2 TIGLTEGTLTAM--ICWADGCIIVYSLIDKESFDYAVS--TLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES----LG 73 (173)
Q Consensus 2 TaG~e~~~~~~y--~~~ad~iilv~d~~~~~s~~~~~~--~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~ 73 (173)
|+|.+.+.+... ...||++|+++|.-. .-+++... ++..+... ..++|..||+||.+-.+-..+ +-
T Consensus 93 TPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvdy~e~~F~~I~~dy 166 (431)
T COG2895 93 TPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLGI-----RHVVVAVNKMDLVDYSEEVFEAIVADY 166 (431)
T ss_pred CCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhCC-----cEEEEEEeeecccccCHHHHHHHHHHH
Confidence 778766533332 456999999999842 22332221 33333322 358889999999764332222 23
Q ss_pred HHHhhhcCC---eEEEEcccCCcccHH
Q psy2792 74 RSTAVKYNC---TFHEVSVADNSPAIY 97 (173)
Q Consensus 74 ~~~~~~~~~---~~~e~Sak~g~~~v~ 97 (173)
..|+.++++ .|+.+||..|+ ||-
T Consensus 167 ~~fa~~L~~~~~~~IPiSAl~GD-NV~ 192 (431)
T COG2895 167 LAFAAQLGLKDVRFIPISALLGD-NVV 192 (431)
T ss_pred HHHHHHcCCCcceEEechhccCC-ccc
Confidence 457777774 48999999999 874
No 296
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.46 E-value=0.00056 Score=56.00 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-----C
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKE----------SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-----L 65 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-----~ 65 (173)
+||.. ..|.+|+.++++||||+++++.+ .+.+....++.+....--.++|+||+.||.|+-. .
T Consensus 244 GGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~ 323 (389)
T PF00503_consen 244 GGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKG 323 (389)
T ss_dssp TSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTS
T ss_pred CCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCC
Confidence 57754 38999999999999999987532 1333344445555433235799999999999721 0
Q ss_pred -----------cc--CCHHHHHHHhhh------------cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 66 -----------RQ--VDESLGRSTAVK------------YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 66 -----------~~--v~~~~~~~~~~~------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.. -+.+.+..+... ..+.+..++|.+.. ++..+|..+.+.|
T Consensus 324 ~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~-~~~~v~~~v~~~i 389 (389)
T PF00503_consen 324 PKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTE-NIRKVFNAVKDII 389 (389)
T ss_dssp SCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHH-HHHHHHHHHHHHH
T ss_pred CchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccH-HHHHHHHHhcCcC
Confidence 01 123344333211 12345688888888 9999998887653
No 297
>KOG0082|consensus
Probab=97.44 E-value=0.0015 Score=52.46 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=68.4
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChhh----------HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-----
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKES----------FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL----- 65 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~----- 65 (173)
.||.- ..|.+++.++++||||.++++.+- +.+....++.|.+..--.+.++||..||.||-.+
T Consensus 203 GGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~ 282 (354)
T KOG0082|consen 203 GGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKV 282 (354)
T ss_pred CCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccC
Confidence 56643 388899999999999999987532 1122334444544433357999999999998321
Q ss_pred ---------cc-CCHHHHHHHhh--------hc--CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 66 ---------RQ-VDESLGRSTAV--------KY--NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 66 ---------~~-v~~~~~~~~~~--------~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.. -..+++..+.. .. .+-+..++|.+-. +|+.+|..+.+.|..
T Consensus 283 ~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~-nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 283 PLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQ-NVQFVFDAVTDTIIQ 345 (354)
T ss_pred chhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHH-HHHHHHHHHHHHHHH
Confidence 11 12333333221 11 2334566787777 999999999988876
No 298
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00044 Score=54.73 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=60.3
Q ss_pred CcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhc---CCeEEEE
Q psy2792 17 ADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRSTAVKY---NCTFHEV 87 (173)
Q Consensus 17 ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~---~~~~~e~ 87 (173)
.|++|+|.+.+.+ ++-+++.. -+|.. -..+|+|-||+||...... .++++.+|.+.. +.+.+.+
T Consensus 110 MDgAlLvIaANEpcPQPQT~EHl~A--leIig-----ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPi 182 (415)
T COG5257 110 MDGALLVIAANEPCPQPQTREHLMA--LEIIG-----IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPI 182 (415)
T ss_pred hcceEEEEecCCCCCCCchHHHHHH--Hhhhc-----cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeee
Confidence 4899999998874 44444422 12222 2458999999999753221 244555555432 4679999
Q ss_pred cccCCcccHHHHHHHHHHHHhcCC
Q psy2792 88 SVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
||..+. |++.+++.|.+.+....
T Consensus 183 SA~~~~-NIDal~e~i~~~IptP~ 205 (415)
T COG5257 183 SAQHKA-NIDALIEAIEKYIPTPE 205 (415)
T ss_pred hhhhcc-CHHHHHHHHHHhCCCCc
Confidence 999999 99999999999887643
No 299
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.39 E-value=0.0018 Score=47.95 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=58.2
Q ss_pred cHhhhccc---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh----hhcC
Q psy2792 9 TLTAMICW---ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA----VKYN 81 (173)
Q Consensus 9 ~~~~y~~~---ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~ 81 (173)
+...|+.+ -.++++++|+-.+..-.+ ...++-+.. .++|++||+||+|-....+.. ......+ ....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~----~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~ 169 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLE----LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence 45567654 567888999876532211 123333333 469999999999976533221 1112222 2222
Q ss_pred Ce--EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 82 CT--FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 82 ~~--~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.. ++..|+..+. |++++...|.+.+.+
T Consensus 170 ~~~~~~~~ss~~k~-Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKK-GIDELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEeccccc-CHHHHHHHHHHHhhc
Confidence 33 7788999999 999999998877654
No 300
>KOG1144|consensus
Probab=97.38 E-value=0.00042 Score=60.10 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=63.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc----------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR---------- 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---------- 66 (173)
|+|.|.+ ++...-.-||.+|+|+|+.. +++.+.+. .++ ..+.|+||..||+|.....
T Consensus 547 tpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~ 618 (1064)
T KOG1144|consen 547 TPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVE 618 (1064)
T ss_pred CCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHH----hcCCCeEEeehhhhhhcccccCCCchHHH
Confidence 8888775 77777888999999999865 44444332 222 2579999999999963110
Q ss_pred -------cCCH-------HHHHHHhhh------------cC--CeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 67 -------QVDE-------SLGRSTAVK------------YN--CTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 67 -------~v~~-------~~~~~~~~~------------~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.+.. ....+|++. .+ +..+.+||.+|+ ||-+|+.+|++...
T Consensus 619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe-GipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE-GIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC-CcHHHHHHHHHHHH
Confidence 0000 001112211 01 345789999999 99999998887554
No 301
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.28 E-value=0.00048 Score=50.74 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=41.4
Q ss_pred EEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 54 MLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 54 ilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
++|.||.||...-..+.+....-+++. +.+++++|+++|. |+++++.++....
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~-G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGE-GLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCc-CHHHHHHHHHhhc
Confidence 789999999765555556655555554 3789999999999 9999999987643
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.26 E-value=0.00058 Score=52.28 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCCCCCc-cHh-------hhc--ccCcEEEEEEeCCC---hhhHHHHHHHHHHHH-hhhCCCCCcEEEEEeCCCCCCCc-
Q psy2792 2 TIGLTEG-TLT-------AMI--CWADGCIIVYSLID---KESFDYAVSTLQNLQ-RHRAVNNVPVMLLANKLDLEHLR- 66 (173)
Q Consensus 2 TaG~e~~-~~~-------~y~--~~ad~iilv~d~~~---~~s~~~~~~~~~~i~-~~~~~~~~piilv~NK~Dl~~~~- 66 (173)
|+||.+. ... .++ ...-++++++|..- +..|- ..++-.+. ... -+.|.|.|.||+|+.+..
T Consensus 98 tPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~--~~lP~vnvlsK~Dl~~~~~ 173 (238)
T PF03029_consen 98 TPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLR--LELPHVNVLSKIDLLSKYL 173 (238)
T ss_dssp --SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHH--HTSEEEEEE--GGGS-HHH
T ss_pred CCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhh--CCCCEEEeeeccCcccchh
Confidence 8999882 111 122 24557888999753 33342 22222211 111 369999999999997511
Q ss_pred -c----------C-------CH---HHHHHHhhhcC-C-eEEEEcccCCcccHHHHHHHHHHH
Q psy2792 67 -Q----------V-------DE---SLGRSTAVKYN-C-TFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 67 -~----------v-------~~---~~~~~~~~~~~-~-~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
. . .. +....+....+ . .++.+|+++++ ++++++..+-+.
T Consensus 174 ~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~-~~~~L~~~id~a 235 (238)
T PF03029_consen 174 EFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGE-GMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTT-THHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChH-HHHHHHHHHHHH
Confidence 0 0 00 01111122233 3 69999999999 999999877543
No 303
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.23 E-value=0.00066 Score=49.39 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=28.0
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 18 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|++++|.|+.++.+..+ ..+.+.+. .. ..+.|+|+|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~-~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QA-GGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hc-cCCCCEEEEEehhhcCC
Confidence 79999999988643211 12222221 11 13589999999999954
No 304
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.20 E-value=0.0037 Score=52.42 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCCCC----CccC-------CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 51 VPVMLLANKLDLEH----LRQV-------DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 51 ~piilv~NK~Dl~~----~~~v-------~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
+|++||.+|+|... +... -.+..+.+|-.+|...|.||++... |++-|+..|...++..+..
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~-n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEK-NLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccc-cHHHHHHHHHHHhccCCCC
Confidence 79999999999631 1111 1223566788999999999999999 9999999999888775543
No 305
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.17 E-value=0.00073 Score=53.04 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=38.3
Q ss_pred CcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 51 VPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
..-++|.||+||........+......... ...++.+||++|. |++++++||...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGe-Gld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGE-GMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCC-CHHHHHHHHHHh
Confidence 567899999999642211222233333332 4779999999999 999999999764
No 306
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.11 E-value=0.012 Score=43.34 Aligned_cols=93 Identities=8% Similarity=-0.029 Sum_probs=55.8
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCC------HHHHHHHhhhcCCeEEE
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVD------ESLGRSTAVKYNCTFHE 86 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~------~~~~~~~~~~~~~~~~e 86 (173)
..+.|++|+|.|+.+. +-+ ....++.+.+..+. .-.++++|.|+.|......+. ......+.+..+-.|+.
T Consensus 81 ~~g~~~illVi~~~~~-t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-TEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-CHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4678999999998862 211 12233444443211 124788999999864322111 12334444555545544
Q ss_pred Ec-----ccCCcccHHHHHHHHHHHHhc
Q psy2792 87 VS-----VADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 87 ~S-----ak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+ +..+. +|.+|++.|.+.+.+
T Consensus 159 f~~~~~~~~~~~-q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQ-QVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHH-HHHHHHHHHHHHHHh
Confidence 43 45677 999999999998887
No 307
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.09 E-value=0.0048 Score=51.26 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHh-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTA- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~- 77 (173)
|+|..++ =.+..+.-+|++++++|..+- ...+.+.-+..... .+.+-|+|.||+|.+..+.-. -++...+.
T Consensus 75 TPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~ 149 (603)
T COG1217 75 TPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFV 149 (603)
T ss_pred CCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 8888883 556678889999999998762 12222333344444 347778899999987654210 11222222
Q ss_pred ------hhcCCeEEEEcccCCcc---------cHHHHHHHHHHHHhcCC
Q psy2792 78 ------VKYNCTFHEVSVADNSP---------AIYQAFDHLLTESRGGP 111 (173)
Q Consensus 78 ------~~~~~~~~e~Sak~g~~---------~v~~lf~~l~~~i~~~~ 111 (173)
.+++++++..||..|.. ++.-||+.|++.+....
T Consensus 150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 150 ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 24567788899987632 67789999998887644
No 308
>KOG1532|consensus
Probab=97.00 E-value=0.0064 Score=47.39 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=60.0
Q ss_pred CCCCCC-------c--cHhhhcc-cCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC
Q psy2792 2 TIGLTE-------G--TLTAMIC-WADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68 (173)
Q Consensus 2 TaG~e~-------~--~~~~y~~-~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v 68 (173)
|+||-+ | ++..+-. .--++++|+|... +.+|-.-.-+--.|.- ....|+|+|.||+|+.+..-
T Consensus 123 TPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~Dv~d~~f- 198 (366)
T KOG1532|consen 123 TPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTDVSDSEF- 198 (366)
T ss_pred CCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEecccccccHH-
Confidence 788877 2 3333322 2345667777643 4445433333223332 15699999999999865321
Q ss_pred CHHHHHH--------------------------Hhhh-cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 69 DESLGRS--------------------------TAVK-YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 69 ~~~~~~~--------------------------~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++... +-+. .++..+-||+.+|. |.+++|..+-..+-+
T Consensus 199 a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~-G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 199 ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE-GFDDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC-cHHHHHHHHHHHHHH
Confidence 1111100 0011 13567899999999 999999988776654
No 309
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0015 Score=53.15 Aligned_cols=94 Identities=16% Similarity=0.082 Sum_probs=54.3
Q ss_pred CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHH------HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792 2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYA------VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73 (173)
Q Consensus 2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~------~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~ 73 (173)
++|.+++... .-..+||++|||+|..+.+ |+.- ......+.... .--.+|++.||.|+.+-++-..++.
T Consensus 92 aPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wde~rf~ei 168 (428)
T COG5256 92 APGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWDEERFEEI 168 (428)
T ss_pred CCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccCHHHHHHH
Confidence 4666554222 2366899999999998753 2211 11122223322 2235889999999975332222222
Q ss_pred ----HHHhhhcC-----CeEEEEcccCCcccHHHH
Q psy2792 74 ----RSTAVKYN-----CTFHEVSVADNSPAIYQA 99 (173)
Q Consensus 74 ----~~~~~~~~-----~~~~e~Sak~g~~~v~~l 99 (173)
..+.+..| +.|+.|||..|+ |+.+.
T Consensus 169 ~~~v~~l~k~~G~~~~~v~FIPiSg~~G~-Nl~~~ 202 (428)
T COG5256 169 VSEVSKLLKMVGYNPKDVPFIPISGFKGD-NLTKK 202 (428)
T ss_pred HHHHHHHHHHcCCCccCCeEEecccccCC-ccccc
Confidence 22333333 569999999999 88643
No 310
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.96 E-value=0.0015 Score=57.69 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=39.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|||+.++ ....+++.+|++|+|+|..+.-..+....|. .+.. .++|+++|+||+|..
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK----ENVKPVLFINKVDRL 151 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH----cCCCEEEEEEChhcc
Confidence 8999884 6677899999999999997732222222232 2222 457889999999975
No 311
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.96 E-value=0.0015 Score=52.29 Aligned_cols=83 Identities=18% Similarity=0.076 Sum_probs=56.3
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
....++..+|+|+.|.|+-++.+... ..+.+.. .+.|.++|+||+||.... +..+....+....+...+.++
T Consensus 27 ~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v--~~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~~~~~~~v~ 98 (322)
T COG1161 27 QLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV--KEKPKLLVLNKADLAPKE-VTKKWKKYFKKEEGIKPIFVS 98 (322)
T ss_pred HHHHhcccCCEEEEEEeccccccccC-----ccHHHHH--ccCCcEEEEehhhcCCHH-HHHHHHHHHHhcCCCccEEEE
Confidence 44567889999999999999865432 2233333 345569999999997532 344555556666567778888
Q ss_pred ccCCcccHHHHH
Q psy2792 89 VADNSPAIYQAF 100 (173)
Q Consensus 89 ak~g~~~v~~lf 100 (173)
++.+. ++..+.
T Consensus 99 ~~~~~-~~~~i~ 109 (322)
T COG1161 99 AKSRQ-GGKKIR 109 (322)
T ss_pred eeccc-CccchH
Confidence 88777 665555
No 312
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0058 Score=50.24 Aligned_cols=96 Identities=10% Similarity=0.043 Sum_probs=60.2
Q ss_pred CCCCCccHhhh--cccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 3 IGLTEGTLTAM--ICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 3 aG~e~~~~~~y--~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
+|.++.+...- +...|.+++|+|.++ +++-|++. +.... .-...++|.+|+|..+...+ .+...+..
T Consensus 58 pgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdll--gi~~giivltk~D~~d~~r~-e~~i~~Il 129 (447)
T COG3276 58 PGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLL--GIKNGIIVLTKADRVDEARI-EQKIKQIL 129 (447)
T ss_pred CCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhc--CCCceEEEEeccccccHHHH-HHHHHHHH
Confidence 45544444433 347899999999964 44544432 22222 22346899999998753322 11222222
Q ss_pred hhc---CCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 78 VKY---NCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 78 ~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
... ..++|.+|+++|. ||++|.+.|.+..
T Consensus 130 ~~l~l~~~~i~~~s~~~g~-GI~~Lk~~l~~L~ 161 (447)
T COG3276 130 ADLSLANAKIFKTSAKTGR-GIEELKNELIDLL 161 (447)
T ss_pred hhcccccccccccccccCC-CHHHHHHHHHHhh
Confidence 222 3557999999999 9999999999877
No 313
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.84 E-value=0.024 Score=46.84 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=58.7
Q ss_pred Hhhhcc-cCcEEEEEE-eCC--C--hhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC
Q psy2792 10 LTAMIC-WADGCIIVY-SLI--D--KESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC 82 (173)
Q Consensus 10 ~~~y~~-~ad~iilv~-d~~--~--~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 82 (173)
++..+. .+|+.|+|. |.+ + ++.+... ..|+.++++ .++|+++|.||+|-.... +.+....+..+++.
T Consensus 137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~v 210 (492)
T TIGR02836 137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDV 210 (492)
T ss_pred HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCC
Confidence 555666 899999998 764 1 1223333 568888887 459999999999932111 33444566677788
Q ss_pred eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 83 TFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 83 ~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+++.+|+..-. -+++..-+.+.+++-+
T Consensus 211 pvl~v~c~~l~--~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 211 PVLAMDVESMR--ESDILSVLEEVLYEFP 237 (492)
T ss_pred ceEEEEHHHcC--HHHHHHHHHHHHhcCC
Confidence 88888776432 2344443444455543
No 314
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.78 E-value=0.0013 Score=51.53 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=44.3
Q ss_pred hhccc--CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHhhhcCCeEEEE
Q psy2792 12 AMICW--ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 12 ~y~~~--ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~~~~~~~~~e~ 87 (173)
.++.+ +|+++++++.+.. .+.... ++.+.... ..+|+|+|+||+|+....+ .......+.+..+++.+|..
T Consensus 108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D--~~~lk~l~--~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~ 182 (276)
T cd01850 108 PRIPDTRVHACLYFIEPTGH-GLKPLD--IEFMKRLS--KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKF 182 (276)
T ss_pred ccCCCCceEEEEEEEeCCCC-CCCHHH--HHHHHHHh--ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECC
Confidence 34444 6677777776542 121111 22223222 3589999999999854222 22344566777888998877
Q ss_pred cccCC
Q psy2792 88 SVADN 92 (173)
Q Consensus 88 Sak~g 92 (173)
.....
T Consensus 183 ~~~~~ 187 (276)
T cd01850 183 PEDEE 187 (276)
T ss_pred CCCcc
Confidence 65443
No 315
>PRK00007 elongation factor G; Reviewed
Probab=96.73 E-value=0.0067 Score=53.40 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=39.0
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|..++. ...-++.+|++|+|+|....-.-.....| ..+.. .++|+|++.||+|+..
T Consensus 82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCCCC
Confidence 78877642 33457899999999998764333322223 23333 3589999999999874
No 316
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.55 E-value=0.013 Score=39.30 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=27.7
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
.+..+|++++|+|.+++.. +.....+..+. .+.|+++|.||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence 3578999999999877422 22223333342 45899999998
No 317
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.42 E-value=0.036 Score=40.07 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=48.7
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.....+..+|.+|++...+. .+...+..+++.+.+. ++|+.+|.||+|.... ...+..++++..+++++
T Consensus 107 ~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~~---~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 107 PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF----GIPVGVVINKYDLNDE---IAEEIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCcc---hHHHHHHHHHHcCCCeE
Confidence 34456789999999998873 4666777777666553 4678999999996431 24456677777787655
No 318
>KOG2423|consensus
Probab=96.39 E-value=0.015 Score=47.47 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCCCCccHhhh---cccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 3 IGLTEGTLTAM---ICWADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 3 aG~e~~~~~~y---~~~ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
+||..-+|... +..+|++|-|.|.-||- .-..++.+ +... .+...+|+|.|||||.. .-++..+...+.
T Consensus 197 kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~y---lkke--~phKHli~vLNKvDLVP-twvt~~Wv~~lS 270 (572)
T KOG2423|consen 197 KGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIYVLNKVDLVP-TWVTAKWVRHLS 270 (572)
T ss_pred ccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHH---Hhhc--CCcceeEEEeecccccc-HHHHHHHHHHHh
Confidence 46665555443 66899999999999974 22333333 2333 26778999999999964 223344445555
Q ss_pred hhcCCeEEEEcccCCcccHHHHH
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAF 100 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf 100 (173)
+++-.--|..|..+.. |-..++
T Consensus 271 keyPTiAfHAsi~nsf-GKgalI 292 (572)
T KOG2423|consen 271 KEYPTIAFHASINNSF-GKGALI 292 (572)
T ss_pred hhCcceeeehhhcCcc-chhHHH
Confidence 5555445666665555 433333
No 319
>KOG1424|consensus
Probab=96.37 E-value=0.0093 Score=49.98 Aligned_cols=71 Identities=15% Similarity=0.023 Sum_probs=47.5
Q ss_pred cccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccC
Q psy2792 14 ICWADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVAD 91 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 91 (173)
+..+|+||.++|+-+|--| .+++.++.++. +....+|+.||+||....++ .. ...+....++.++..||..
T Consensus 172 lErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~qr-~a-Wa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQR-VA-WAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHHH-HH-HHHHHHhcCceEEEEeccc
Confidence 6789999999999998644 34445544443 34567899999999643221 11 1223445678888889886
No 320
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.35 E-value=0.017 Score=43.75 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=42.9
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCCCCCcc-CC--HHHHHH-Hhhh--cCCeEE
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQ-VD--ESLGRS-TAVK--YNCTFH 85 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~-v~--~~~~~~-~~~~--~~~~~~ 85 (173)
..+.+|++++|+|.+....... ..++..+.. .+.|. ++|.||.|+.+... .. ...... +..+ .+.+++
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~ 174 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF 174 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 4678999999999876432221 223333333 34674 55999999853221 10 111111 2211 235799
Q ss_pred EEcccCCc
Q psy2792 86 EVSVADNS 93 (173)
Q Consensus 86 e~Sak~g~ 93 (173)
.+||++..
T Consensus 175 ~iSa~~~~ 182 (225)
T cd01882 175 YLSGIVHG 182 (225)
T ss_pred EEeeccCC
Confidence 99999873
No 321
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.25 E-value=0.0059 Score=43.52 Aligned_cols=48 Identities=17% Similarity=0.012 Sum_probs=34.2
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL 60 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 60 (173)
++..|+..+|++|+|.+.+...+-.....|....... ...+++|.||+
T Consensus 121 ~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 121 ITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD----KSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT----CSSEEEEEE-G
T ss_pred HHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC----CCeEEEEEcCC
Confidence 7888999999999999999865544444555444433 34489999985
No 322
>KOG4273|consensus
Probab=96.13 E-value=0.016 Score=44.60 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=60.4
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC---------------------------cc--
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL---------------------------RQ-- 67 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---------------------------~~-- 67 (173)
..++++|||++....+..+..|+.-..-.. -+ .++.+|||.|.... ..
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htdins--fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgis 155 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTDINS--FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGIS 155 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhcccccccc--ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccc
Confidence 357899999999989999999975322111 11 34567999995210 00
Q ss_pred ---------------CCHHHHHHHhhhcCCeEEEEcccC------------CcccHHHHHHHHHHHHhcC
Q psy2792 68 ---------------VDESLGRSTAVKYNCTFHEVSVAD------------NSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 68 ---------------v~~~~~~~~~~~~~~~~~e~Sak~------------g~~~v~~lf~~l~~~i~~~ 110 (173)
.....+.+|+.++|+.|++.+|.+ .. ||+.+|..|-..+..+
T Consensus 156 etegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsq-gverifgal~ahmwpg 224 (418)
T KOG4273|consen 156 ETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQ-GVERIFGALNAHMWPG 224 (418)
T ss_pred ccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchh-hHHHHHHHhhhccCcc
Confidence 011234678999999999999953 24 8899998887655443
No 323
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.88 E-value=0.014 Score=51.64 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=38.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|..++ -....++.+|++|+|+|....-.-.....|. .+.. .++|.|++.||+|+.
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH----cCCCeEEEEECchhh
Confidence 7888874 5556789999999999987642222222333 2222 246789999999975
No 324
>PTZ00416 elongation factor 2; Provisional
Probab=95.84 E-value=0.013 Score=52.76 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|..++ -...-++.+|++|+|+|..+.-.-.....| ..+.. .++|+|+|.||+|+.
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence 7787774 334557899999999998874222222223 33333 358999999999985
No 325
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=95.80 E-value=0.014 Score=52.53 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|..++. ...-++.+|++|+|+|....-.......|. .+.. .++|+|++.||+|..
T Consensus 105 tPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 105 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH----CCCCEEEEEECCccc
Confidence 78887753 334478999999999988643222222333 2333 468999999999975
No 326
>KOG0458|consensus
Probab=95.79 E-value=0.021 Score=48.57 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=54.1
Q ss_pred CCCCCCccHhh--hcccCcEEEEEEeCCChhhHHHH------HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792 2 TIGLTEGTLTA--MICWADGCIIVYSLIDKESFDYA------VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73 (173)
Q Consensus 2 TaG~e~~~~~~--y~~~ad~iilv~d~~~~~s~~~~------~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~ 73 (173)
++|..++.... -...||++|+|+|.+. ..|+.- ...+..+.+.. .---+||+.||.|+.+=.+-..+++
T Consensus 262 aPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~Wsq~RF~eI 338 (603)
T KOG0458|consen 262 APGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSWSQDRFEEI 338 (603)
T ss_pred CCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCccHHHHHHH
Confidence 45655543332 2457999999999875 234321 11223333433 2346899999999864222112222
Q ss_pred ----HHHh-hhcC-----CeEEEEcccCCcccHHHH
Q psy2792 74 ----RSTA-VKYN-----CTFHEVSVADNSPAIYQA 99 (173)
Q Consensus 74 ----~~~~-~~~~-----~~~~e~Sak~g~~~v~~l 99 (173)
..|. +..| +.|+.||+..|+ |+...
T Consensus 339 k~~l~~fL~~~~gf~es~v~FIPiSGl~Ge-NL~k~ 373 (603)
T KOG0458|consen 339 KNKLSSFLKESCGFKESSVKFIPISGLSGE-NLIKI 373 (603)
T ss_pred HHHHHHHHHHhcCcccCCcceEecccccCC-ccccc
Confidence 2233 3333 569999999999 87644
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.70 E-value=0.059 Score=42.51 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=48.6
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHh----hh--cCCeEE
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTA----VK--YNCTFH 85 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~----~~--~~~~~~ 85 (173)
..-||.+++|.-..--+..+-++ .-+.+ +-=|+|.||.|......... ..+..+. .. |.-+.+
T Consensus 162 ~~~aDt~~~v~~pg~GD~~Q~iK---~GimE------iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~ 232 (323)
T COG1703 162 ANMADTFLVVMIPGAGDDLQGIK---AGIME------IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVV 232 (323)
T ss_pred hhhcceEEEEecCCCCcHHHHHH---hhhhh------hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCcee
Confidence 34578877776543333343333 23333 22368899999643211000 0111111 11 224589
Q ss_pred EEcccCCcccHHHHHHHHHHHHh
Q psy2792 86 EVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.+||..|. |+++|++.+.+...
T Consensus 233 ~t~A~~g~-Gi~~L~~ai~~h~~ 254 (323)
T COG1703 233 TTSALEGE-GIDELWDAIEDHRK 254 (323)
T ss_pred EeeeccCC-CHHHHHHHHHHHHH
Confidence 99999999 99999999987654
No 328
>KOG0410|consensus
Probab=95.70 E-value=0.011 Score=47.18 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=55.9
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc----EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP----VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
.+..+|.+|.|.|++.|.--++...-+.-+.+.. .+..| +|=|-||+|..... +. .+.++ .+.+|
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig-v~~~pkl~~mieVdnkiD~e~~~-~e-------~E~n~--~v~is 322 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG-VPSEPKLQNMIEVDNKIDYEEDE-VE-------EEKNL--DVGIS 322 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC-CCcHHHHhHHHhhcccccccccc-Cc-------cccCC--ccccc
Confidence 4678999999999999875555444444444433 23333 45567788864321 11 12222 57899
Q ss_pred ccCCcccHHHHHHHHHHHHhc
Q psy2792 89 VADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i~~ 109 (173)
|++|+ |.+++...+-..+..
T Consensus 323 altgd-gl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 323 ALTGD-GLEELLKAEETKVAS 342 (410)
T ss_pred cccCc-cHHHHHHHHHHHhhh
Confidence 99999 999999888776654
No 329
>KOG3886|consensus
Probab=95.68 E-value=0.064 Score=40.92 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=56.9
Q ss_pred hhhcccCcEEEEEEeCCChhh---HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCCHHH----HHHHhhhcC
Q psy2792 11 TAMICWADGCIIVYSLIDKES---FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVDESL----GRSTAVKYN 81 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~----~~~~~~~~~ 81 (173)
..-+++.+++|+|||+...+- |+.....++.+.++. ++..+.+...|.||.... ++..++ ...+....+
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~ 153 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLE 153 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhccccc
Confidence 355889999999999987653 333344555666654 778899999999996422 211111 112222334
Q ss_pred CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 82 CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 82 ~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+.+|.+|.-+. .+......++..+..
T Consensus 154 ~~~f~TsiwDe--tl~KAWS~iv~~lip 179 (295)
T KOG3886|consen 154 CKCFPTSIWDE--TLYKAWSSIVYNLIP 179 (295)
T ss_pred ccccccchhhH--HHHHHHHHHHHhhCC
Confidence 56777776543 345555555544443
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.67 E-value=0.008 Score=46.39 Aligned_cols=84 Identities=10% Similarity=0.036 Sum_probs=46.8
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhh----hcCCeEEEE
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAV----KYNCTFHEV 87 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~----~~~~~~~e~ 87 (173)
..-||.+++|.-..--+..+.++.= +.+ +.=|+|.||+|.......-. .....+.. .+..+++.|
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaG---imE------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~t 210 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAG---IME------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKT 210 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TT---HHH------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEE
T ss_pred HHhcCeEEEEecCCCccHHHHHhhh---hhh------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence 4468899988876554444333322 222 23378899999643211101 11112222 123468999
Q ss_pred cccCCcccHHHHHHHHHHHH
Q psy2792 88 SVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~~i 107 (173)
||.++. ||+++++.|.+..
T Consensus 211 sA~~~~-Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 211 SALEGE-GIDELWEAIDEHR 229 (266)
T ss_dssp BTTTTB-SHHHHHHHHHHHH
T ss_pred EeCCCC-CHHHHHHHHHHHH
Confidence 999999 9999999988643
No 331
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.65 E-value=0.19 Score=36.50 Aligned_cols=90 Identities=19% Similarity=0.117 Sum_probs=64.2
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
..|.|+|++|.+..-|+..++.-+..+.... ---.+.++++-+...+.-.+...+..+++..+.++++.+--.+.. +
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f--flGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~-~ 140 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF--FLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEE-G 140 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhh--hccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccch-H
Confidence 4799999999999989887766444443221 112355566666655556788899999999999998888777666 7
Q ss_pred HHHHHHHHHHHHh
Q psy2792 96 IYQAFDHLLTESR 108 (173)
Q Consensus 96 v~~lf~~l~~~i~ 108 (173)
...+-+.|++.+.
T Consensus 141 ~~~lAqRLL~~lq 153 (176)
T PF11111_consen 141 RTSLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666543
No 332
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.52 E-value=0.047 Score=41.89 Aligned_cols=52 Identities=13% Similarity=0.024 Sum_probs=32.7
Q ss_pred cHhhhccc-CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 9 TLTAMICW-ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 9 ~~~~y~~~-ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
+...|+++ .+++++|.|.+.--.-.........+. ....++++|.||+|..+
T Consensus 154 lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 154 MIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEECCCCCC
Confidence 67789995 458999998754211111112222232 24689999999999864
No 333
>KOG2484|consensus
Probab=95.35 E-value=0.03 Score=45.63 Aligned_cols=71 Identities=18% Similarity=0.069 Sum_probs=42.9
Q ss_pred cccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 14 ICWADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
+..+|+||.|.|.-||.+- .+++.|+- +. ..+...|+|.||+||.. +++-.++...+..+...-.|.+|..
T Consensus 144 ve~sDVVleVlDARDPlgtR~~~vE~~V~---~~--~gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 144 VEASDVVLEVLDARDPLGTRCPEVEEAVL---QA--HGNKKLILVLNKIDLVP-REVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HhhhheEEEeeeccCCCCCCChhHHHHHH---hc--cCCceEEEEeehhccCC-HHHHHHHHHHHHhhCCcceeecccc
Confidence 5569999999999998753 33444432 21 14578999999999964 3333344444444333323444433
No 334
>KOG0461|consensus
Probab=95.17 E-value=0.1 Score=42.13 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=52.6
Q ss_pred cHhhhcccC---cEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCCHH-HHHHHhhh
Q psy2792 9 TLTAMICWA---DGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVDES-LGRSTAVK 79 (173)
Q Consensus 9 ~~~~y~~~a---d~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~-~~~~~~~~ 79 (173)
+.+..+.+| |..++|+|+..- ++-+.+ .+.++.. ...|+|.||+|+..+ |.-..+ ......+.
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 445555554 678999998753 222211 2222222 347788899887532 221111 12222221
Q ss_pred c-------CCeEEEEcccCC----cccHHHHHHHHHHHHhc
Q psy2792 80 Y-------NCTFHEVSVADN----SPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~-------~~~~~e~Sak~g----~~~v~~lf~~l~~~i~~ 109 (173)
+ +.+.+++||+.| + ++.++.+.|...+.+
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~-~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEE-MIQELKEALESRIFE 194 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchh-HHHHHHHHHHHhhcC
Confidence 1 266899999999 6 777777777777665
No 335
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.084 Score=41.73 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=51.0
Q ss_pred cCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHHHhhhcCC-----e
Q psy2792 16 WADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRSTAVKYNC-----T 83 (173)
Q Consensus 16 ~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~~-----~ 83 (173)
+.|+.|+|++.+| |++-+++. ..++ -.+| ++++.||+|+.+..+.- +.+..++...+++ +
T Consensus 98 qmDgAILVVsA~dGpmPqTrEHiL----larq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~P 169 (394)
T COG0050 98 QMDGAILVVAATDGPMPQTREHIL----LARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTP 169 (394)
T ss_pred hcCccEEEEEcCCCCCCcchhhhh----hhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 5799999999998 44554431 1222 2365 67789999998644322 2345566666664 3
Q ss_pred EEEEcccCCc-------ccHHHHHHHHHHHHhc
Q psy2792 84 FHEVSVADNS-------PAIYQAFDHLLTESRG 109 (173)
Q Consensus 84 ~~e~Sak~g~-------~~v~~lf~~l~~~i~~ 109 (173)
++.-||.... ..|.+|++.+-+.+..
T Consensus 170 ii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 170 IIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred eeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 5666665322 1356666666555543
No 336
>KOG0447|consensus
Probab=95.15 E-value=0.094 Score=44.78 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=52.8
Q ss_pred CCCCCCC-------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792 1 MTIGLTE-------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73 (173)
Q Consensus 1 ~TaG~e~-------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~ 73 (173)
||+|... .+..+|+.+-++||+|+-=. |.+.-...+..+....++.+.-.|+|.+|.||.+....++..+
T Consensus 426 vT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI 502 (980)
T KOG0447|consen 426 VTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRI 502 (980)
T ss_pred hcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHH
Confidence 6888776 28899999999999998532 2222233344455555556778999999999987666677777
Q ss_pred HHHhh
Q psy2792 74 RSTAV 78 (173)
Q Consensus 74 ~~~~~ 78 (173)
....+
T Consensus 503 ~kIle 507 (980)
T KOG0447|consen 503 QQIIE 507 (980)
T ss_pred HHHHh
Confidence 66554
No 337
>KOG0468|consensus
Probab=94.65 E-value=0.054 Score=47.08 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=38.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
|+|.-++ =.-.-++-+|++++|+|+.+--.++.- ..+.... ..+.|+++|.||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH----hccCcEEEEEehhHH
Confidence 6777664 334468899999999999876555432 2222222 356999999999995
No 338
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=94.51 E-value=0.24 Score=38.61 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=47.5
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
+-+.+||.+|+|-..| +..+.+++..++.+... ++|..+|.||.++-. . +.++++.+.+++++
T Consensus 181 ~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f----~ip~~iViNr~~~g~-----s-~ie~~~~e~gi~il 243 (284)
T COG1149 181 ASLKGADLAILVTEPT-PFGLHDLKRALELVEHF----GIPTGIVINRYNLGD-----S-EIEEYCEEEGIPIL 243 (284)
T ss_pred HhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh----CCceEEEEecCCCCc-----h-HHHHHHHHcCCCee
Confidence 4578999999998776 44677777776666654 599999999997532 2 67888888887754
No 339
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.46 E-value=0.16 Score=42.20 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=38.8
Q ss_pred CCCCCCccHhhh--cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEGTLTAM--ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~~~~~y--~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|.+++--..| +--+|.+|.|.|...- .+.-. ..+-+.+...++||+-..||.|...
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT---~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQT---LKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccC--ccHHH---HHHHHHHhhcCCceEEEeecccccc
Confidence 899988644444 6679999999998763 11101 1122333346899999999999653
No 340
>COG3596 Predicted GTPase [General function prediction only]
Probab=94.41 E-value=0.22 Score=38.96 Aligned_cols=103 Identities=14% Similarity=-0.002 Sum_probs=66.1
Q ss_pred CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-------
Q psy2792 2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL------- 65 (173)
Q Consensus 2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------- 65 (173)
|+|.+++ +...|+...|.++++.+..|+.=--+ ..++..+.... -+.++++|.|.+|....
T Consensus 94 tPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~ 170 (296)
T COG3596 94 TPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSA 170 (296)
T ss_pred CCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccc
Confidence 7888873 45567888999999999998742111 33344444433 34899999999997422
Q ss_pred -ccCCH-------HHH---HHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 66 -RQVDE-------SLG---RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 66 -~~v~~-------~~~---~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...+. +.+ .+++.. -.+++.++...+. |++.+...++..+..
T Consensus 171 ~~~p~~a~~qfi~~k~~~~~~~~q~-V~pV~~~~~r~~w-gl~~l~~ali~~lp~ 223 (296)
T COG3596 171 GHQPSPAIKQFIEEKAEALGRLFQE-VKPVVAVSGRLPW-GLKELVRALITALPV 223 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhh-cCCeEEeccccCc-cHHHHHHHHHHhCcc
Confidence 11111 111 112221 1346778889999 999999999988764
No 341
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.05 E-value=0.43 Score=36.52 Aligned_cols=71 Identities=21% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN 81 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 81 (173)
-||.| -+.+-..+++|.+|.|.|.+. +|+...+...+...+ . .=.++.+|.||.|-. .......+...+
T Consensus 142 EAGiE-HfgRg~~~~vD~vivVvDpS~-~sl~taeri~~L~~e-l--g~k~i~~V~NKv~e~------e~~~~~~~~~~~ 210 (255)
T COG3640 142 EAGIE-HFGRGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEE-L--GIKRIFVVLNKVDEE------EELLRELAEELG 210 (255)
T ss_pred ccchh-hhccccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHH-h--CCceEEEEEeeccch------hHHHHhhhhccC
Confidence 35553 234445789999999999864 455544443332222 2 126899999999942 233444455555
Q ss_pred Ce
Q psy2792 82 CT 83 (173)
Q Consensus 82 ~~ 83 (173)
.+
T Consensus 211 ~~ 212 (255)
T COG3640 211 LE 212 (255)
T ss_pred Ce
Confidence 43
No 342
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.96 E-value=0.17 Score=39.34 Aligned_cols=48 Identities=27% Similarity=0.292 Sum_probs=31.1
Q ss_pred cCcEEEEEEeCCCh-----h--hHHHH----HHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 16 WADGCIIVYSLIDK-----E--SFDYA----VSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 16 ~ad~iilv~d~~~~-----~--s~~~~----~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
-.++||+++|+.+- + .+... ..-+.++.+.. .-.+||.||.+|+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~l-g~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTL-GVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHh-CCCCCeEeeeECCCccc
Confidence 46999999998652 1 12221 22334444433 36899999999999864
No 343
>KOG3887|consensus
Probab=93.71 E-value=0.57 Score=36.19 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCCCCc-----cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHh-hhCCCCCcEEEEEeCCCCCCC-ccCCH-----
Q psy2792 3 IGLTEG-----TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQR-HRAVNNVPVMLLANKLDLEHL-RQVDE----- 70 (173)
Q Consensus 3 aG~e~~-----~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~NK~Dl~~~-~~v~~----- 70 (173)
+||-+. -....++++-+.|+|.|.-+. -.+.+......+.+ +.-.+++.+=+...|.|-..+ -.+..
T Consensus 83 PGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~ 161 (347)
T KOG3887|consen 83 PGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIH 161 (347)
T ss_pred CCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHH
Confidence 577663 344568999999999998653 12222222222221 222378888899999995422 11211
Q ss_pred -HHHHHHhh----hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 71 -SLGRSTAV----KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 71 -~~~~~~~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
.....++. ...+.|+.+|..+ . .|-|.|..+++.+..+-+
T Consensus 162 qr~~d~l~d~gle~v~vsf~LTSIyD-H-SIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 162 QRTNDELADAGLEKVQVSFYLTSIYD-H-SIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred HHhhHHHHhhhhccceEEEEEeeecc-h-HHHHHHHHHHHHHhhhch
Confidence 11122222 2224577777665 4 699999999988876443
No 344
>KOG0099|consensus
Probab=93.66 E-value=0.31 Score=38.01 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCCCCc--cHhhhcccCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 3 IGLTEG--TLTAMICWADGCIIVYSLIDKE----------SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 3 aG~e~~--~~~~y~~~ad~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.||++. .|-..+.+..+||||...+... .+.+....+..+.+..=...+-+||..||.||
T Consensus 210 GGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 210 GGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred CCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 577764 8889999999999999876521 12222222222222211134779999999998
No 345
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=92.97 E-value=0.85 Score=39.06 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE--cccCCcccHHHHHHHHHHHHhc
Q psy2792 32 FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV--SVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 32 ~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~--Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
|.++..-++.++.+ ++|++|+.||.|...+.+ .+..+++|.+.|+.+..+ =++-|. |-.++-..+++.+.+
T Consensus 358 l~NL~RHIenvr~F----GvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~-Gai~LA~aVveA~~~ 430 (557)
T PRK13505 358 FANLERHIENIRKF----GVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGE-GGVELAEKVVELIEE 430 (557)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCc-chHHHHHHHHHHHhc
Confidence 45555555555554 599999999999854322 456788999999886633 344566 777777777776654
No 346
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.20 E-value=2.6 Score=30.54 Aligned_cols=86 Identities=7% Similarity=0.016 Sum_probs=61.0
Q ss_pred cccCcEEEEEEeCCCh-------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792 14 ICWADGCIIVYSLIDK-------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE 86 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 86 (173)
++...+=.+++|.+|- +-.+++..|++++++.. ..--++||-|-+-..+ .....++..+.+.++++++.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~ 111 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF--GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLR 111 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC--CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEE
Confidence 6677777788898773 12356788999998765 2225889999764322 33467888899999999988
Q ss_pred EcccCCcccHHHHHHHHH
Q psy2792 87 VSVADNSPAIYQAFDHLL 104 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~ 104 (173)
-+++... +..++...+.
T Consensus 112 h~~kKP~-~~~~i~~~~~ 128 (168)
T PF09419_consen 112 HRAKKPG-CFREILKYFK 128 (168)
T ss_pred eCCCCCc-cHHHHHHHHh
Confidence 8887776 7777666553
No 347
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=92.17 E-value=1.1 Score=36.89 Aligned_cols=101 Identities=14% Similarity=0.042 Sum_probs=52.4
Q ss_pred CCCCCCc----cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHH-
Q psy2792 2 TIGLTEG----TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGR- 74 (173)
Q Consensus 2 TaG~e~~----~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~- 74 (173)
|.|.|.. ++-..-...|-.++|+..+|--+-- .++-+--.. .-+.|+|+|.+|+|+..+..+. .+++.
T Consensus 208 tvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~----a~~lPviVvvTK~D~~~ddr~~~v~~ei~~ 282 (527)
T COG5258 208 TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIAL----AMELPVIVVVTKIDMVPDDRFQGVVEEISA 282 (527)
T ss_pred cCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhh----hhcCCEEEEEEecccCcHHHHHHHHHHHHH
Confidence 4455542 3333445567777777766632210 011111111 1468999999999996431110 01110
Q ss_pred ---------------------HHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 75 ---------------------STAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 75 ---------------------~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..+-+.+ .++|.+|+.+|. |++-| ..+...+..
T Consensus 283 ~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~-GldlL-~e~f~~Lp~ 339 (527)
T COG5258 283 LLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE-GLDLL-DEFFLLLPK 339 (527)
T ss_pred HHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc-cHHHH-HHHHHhCCc
Confidence 1112222 568999999999 97644 444444443
No 348
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=92.15 E-value=0.26 Score=43.50 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
|+|.-++ =...-++-+|++|+|+|...--......-|... .+ .++|.|++.||.|.
T Consensus 83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~----~~vp~i~fiNKmDR 140 (697)
T COG0480 83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DK----YGVPRILFVNKMDR 140 (697)
T ss_pred CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hh----cCCCeEEEEECccc
Confidence 7888875 334568899999999999764222222334332 22 46999999999996
No 349
>KOG0466|consensus
Probab=91.68 E-value=0.25 Score=39.33 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=57.4
Q ss_pred cEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhhh---cCCeEEEEc
Q psy2792 18 DGCIIVYSLID----KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAVK---YNCTFHEVS 88 (173)
Q Consensus 18 d~iilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~---~~~~~~e~S 88 (173)
|+++++...+. |++-+++.. -++.+. ..++++-||+||..+.+.. .+.++.|... .+.+.+.+|
T Consensus 150 DaalLlIA~NEsCPQPQTsEHLaa--veiM~L-----khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPis 222 (466)
T KOG0466|consen 150 DAALLLIAGNESCPQPQTSEHLAA--VEIMKL-----KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPIS 222 (466)
T ss_pred hhhhhhhhcCCCCCCCchhhHHHH--HHHhhh-----ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeeh
Confidence 66777766554 344454432 223332 3588999999997543321 2334455443 256799999
Q ss_pred ccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 89 VADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
|.-+. ||+.+.+.|+..+.....
T Consensus 223 AQlky-NId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 223 AQLKY-NIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhhcc-ChHHHHHHHHhcCCCCcc
Confidence 99999 999999999999876443
No 350
>KOG1954|consensus
Probab=91.12 E-value=0.27 Score=40.14 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=34.1
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
..+=|...+|.||++||....+--++....+..++. .+-.+-||.||+|..+
T Consensus 174 v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 174 VLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQVD 225 (532)
T ss_pred HHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccccC
Confidence 445567889999999997654433333444444444 3346778899999753
No 351
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=90.04 E-value=1.4 Score=30.47 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=35.7
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.....+..+|.+++|.+.+ ..++......++.+.+.. ...++.+|.|+++-
T Consensus 59 ~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 59 NVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 4456789999999999885 445665555555554433 34578899999974
No 352
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=88.33 E-value=2.4 Score=33.87 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=29.9
Q ss_pred cCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCC
Q psy2792 16 WADGCIIVYSLIDKESFDYA-VSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVD 69 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~ 69 (173)
+.|++|||..++... +... ...++.+....+ .--.++|||.+++|.......+
T Consensus 118 g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 118 TIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred CCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 689999997655321 2222 234444444331 1224689999999975333333
No 353
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=87.92 E-value=3.1 Score=27.37 Aligned_cols=50 Identities=20% Similarity=0.056 Sum_probs=34.5
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
.....+..+|.+|++.+.+ ..++..+..+++.+.+........+.+|+|+
T Consensus 57 ~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 57 VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4456788999999999764 4577777777777766542113467778775
No 354
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=86.57 E-value=3.3 Score=33.28 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=37.0
Q ss_pred cCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeEEEEccc
Q psy2792 16 WADGCIIVYSLIDKESFDY-AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTFHEVSVA 90 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sak 90 (173)
.-|++|-|+|...-..... +.....+-... -=+||.||+|+.+... .+.......+.+ ..++.++..
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 3578999999866432111 22222222222 2267899999976443 233344444443 667887773
No 355
>KOG0460|consensus
Probab=85.49 E-value=4 Score=33.23 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=39.8
Q ss_pred cCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC---CHHHHHHHhhhcC-----CeE
Q psy2792 16 WADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV---DESLGRSTAVKYN-----CTF 84 (173)
Q Consensus 16 ~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v---~~~~~~~~~~~~~-----~~~ 84 (173)
+-|++|+|+..+| |++-+++ -..++.. -..+++..||.|+.++.+. -+-+..++..++| +++
T Consensus 140 qMDGaILVVaatDG~MPQTrEHl----LLArQVG---V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv 212 (449)
T KOG0460|consen 140 QMDGAILVVAATDGPMPQTREHL----LLARQVG---VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV 212 (449)
T ss_pred ccCceEEEEEcCCCCCcchHHHH----HHHHHcC---CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe
Confidence 4699999999998 3444433 2223322 1247788999999743321 1223455666665 446
Q ss_pred EEEccc
Q psy2792 85 HEVSVA 90 (173)
Q Consensus 85 ~e~Sak 90 (173)
+.=||.
T Consensus 213 I~GSAL 218 (449)
T KOG0460|consen 213 IRGSAL 218 (449)
T ss_pred eecchh
Confidence 655554
No 356
>KOG2485|consensus
Probab=85.45 E-value=2.4 Score=33.80 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=47.6
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
+.-+...|+||=|-|+--|-|-.+. . +.... +..|-|||.||+||.+..+ ....++.++.+....++..++.
T Consensus 41 ~~~l~~~D~iiEvrDaRiPLssrn~--~---~~~~~--~~k~riiVlNK~DLad~~~-~k~~iq~~~~~~~~~~~~~~c~ 112 (335)
T KOG2485|consen 41 QNRLPLVDCIIEVRDARIPLSSRNE--L---FQDFL--PPKPRIIVLNKMDLADPKE-QKKIIQYLEWQNLESYIKLDCN 112 (335)
T ss_pred HhhcccccEEEEeeccccCCccccH--H---HHHhc--CCCceEEEEecccccCchh-hhHHHHHHHhhcccchhhhhhh
Confidence 4457789999999998766443221 1 22222 4678999999999976332 2334455555544334433333
Q ss_pred --CCcccHHHHHHHH
Q psy2792 91 --DNSPAIYQAFDHL 103 (173)
Q Consensus 91 --~g~~~v~~lf~~l 103 (173)
... ++..++..+
T Consensus 113 ~~~~~-~v~~l~~il 126 (335)
T KOG2485|consen 113 KDCNK-QVSPLLKIL 126 (335)
T ss_pred hhhhh-ccccHHHHH
Confidence 332 355554433
No 357
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=85.07 E-value=5.7 Score=32.42 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=44.7
Q ss_pred ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
..+..++.++|.|++|.+.+ -.++...++.++++.+.. ....+..+|.||.+-.
T Consensus 231 ~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 231 DWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLR-PNDPKPILVLNRVGVP 284 (366)
T ss_pred hHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCC
Confidence 36788999999999999975 347788888888888877 4677888999999964
No 358
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=84.11 E-value=1.4 Score=41.53 Aligned_cols=48 Identities=27% Similarity=0.247 Sum_probs=34.5
Q ss_pred ccCcEEEEEEeCCChh-----hH----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 15 CWADGCIIVYSLIDKE-----SF----DYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~-----s~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
+-.|+||+++|+.+-- .. ..+...+.++.+.. .-.+||.||.+|+|+.
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhh
Confidence 3589999999987632 11 23445566666655 3689999999999985
No 359
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=83.95 E-value=11 Score=26.60 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=42.7
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.....+..+|.+|++.+.+. .++..+..+++.+... ....+.+|.|++|-... ...+....+.+.++..++
T Consensus 77 ~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~--~~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 77 GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV--EGGDMVEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc--chhhHHHHHHHHhCCCEE
Confidence 34456789999999998754 4566666666666542 22356789999985321 122223344455565543
No 360
>KOG1486|consensus
Probab=81.85 E-value=6.6 Score=30.70 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=40.5
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.-++.+.|-||+|. ++.++...+|..-+. +-+|+.-.- |++.+.+.+-+.+.-
T Consensus 237 ~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~l-nld~lle~iWe~l~L 289 (364)
T KOG1486|consen 237 VYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKL-NLDRLLERIWEELNL 289 (364)
T ss_pred eEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEecccc-CHHHHHHHHHHHhce
Confidence 34789999999994 568888888887664 455666667 888888888776654
No 361
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=81.79 E-value=6.6 Score=29.24 Aligned_cols=95 Identities=11% Similarity=0.009 Sum_probs=53.7
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCC-------HHHHHHHhhhcCCeEE
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVD-------ESLGRSTAVKYNCTFH 85 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~-------~~~~~~~~~~~~~~~~ 85 (173)
..+.|++|||+.++.. +-++ ...++.+....+. ----+|||.+..|......+. ......+.+..+-.|.
T Consensus 81 ~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 4578999999998832 2111 2223333333311 112477788887754433211 1123445566666677
Q ss_pred EEccc------CCcccHHHHHHHHHHHHhcCC
Q psy2792 86 EVSVA------DNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 86 e~Sak------~g~~~v~~lf~~l~~~i~~~~ 111 (173)
....+ ... .+.+|+..+-..+.++.
T Consensus 159 ~f~n~~~~~~~~~~-qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDES-QVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHH-HHHHHHHHHHHHHHHcC
Confidence 66665 334 78899998888877754
No 362
>PHA02518 ParA-like protein; Provisional
Probab=81.00 E-value=15 Score=26.70 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=34.7
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCC
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDL 62 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl 62 (173)
|+|....+....+..||.+|++...+.. .....+..++..+.... ...+ +.+|.|+.+-
T Consensus 84 ~p~~~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 84 GAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIK 145 (211)
T ss_pred CCCCccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCC
Confidence 4554444677788899999999987642 12333344444433322 3344 4567787653
No 363
>PRK13695 putative NTPase; Provisional
Probab=80.72 E-value=18 Score=25.80 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=46.3
Q ss_pred HhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 10 LTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
....+.++|+ +++|=-.+ ++.. ..+.+.+.... ..+.|+|+|.||... ......+....+...+++
T Consensus 90 ~~~~l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~- 156 (174)
T PRK13695 90 LERALEEADV--IIIDEIGK--MELKSPKFVKAVEEVL-DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL- 156 (174)
T ss_pred HHhccCCCCE--EEEECCCc--chhhhHHHHHHHHHHH-hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE-
Confidence 3345567777 46672111 1111 22333343333 256899999998643 223344444455667776
Q ss_pred ccCCcccHHHHHHHHHHHH
Q psy2792 89 VADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i 107 (173)
+.+ |-+++.+.+.+.+
T Consensus 157 --~~~-~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 --TPE-NRDSLPFEILNRL 172 (174)
T ss_pred --cch-hhhhHHHHHHHHH
Confidence 455 7788988888765
No 364
>PTZ00258 GTP-binding protein; Provisional
Probab=80.62 E-value=2.5 Score=34.87 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=28.5
Q ss_pred CCcEEEEEeCC--CCCCCccCCHHHHHHHhhhc-CCeEEEEcccCCc
Q psy2792 50 NVPVMLLANKL--DLEHLRQVDESLGRSTAVKY-NCTFHEVSVADNS 93 (173)
Q Consensus 50 ~~piilv~NK~--Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sak~g~ 93 (173)
..|+++|+|+. |+.....-..+....++... +..++.+||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 46999999999 76211111234455566666 4789999987654
No 365
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=80.34 E-value=5.2 Score=32.69 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=30.8
Q ss_pred CCCcEEEEEeCCCCCCCccCC--HHHHHHHhhhcCCeEEEEcccCCc
Q psy2792 49 NNVPVMLLANKLDLEHLRQVD--ESLGRSTAVKYNCTFHEVSVADNS 93 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~~e~Sak~g~ 93 (173)
...|+++|+||.|...... . .....+++...+..++.+||+-..
T Consensus 205 t~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~E~ 250 (372)
T COG0012 205 TAKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAIEL 250 (372)
T ss_pred hcCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHHHH
Confidence 3579999999999754222 1 344566677777889999997443
No 366
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=79.30 E-value=5.5 Score=28.00 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
|||...... .++..||-+|+|...+--+.+.-++. .... .-=++|.||+|
T Consensus 99 taG~~~~~~-~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 99 TVGVGQSEV-DIASMADTTVVVMAPGAGDDIQAIKA---GIME------IADIVVVNKAD 148 (148)
T ss_pred CCccChhhh-hHHHhCCEEEEEECCCchhHHHHhhh---hHhh------hcCEEEEeCCC
Confidence 577654443 48889999999887663333322211 1111 22367889998
No 367
>KOG0448|consensus
Probab=78.81 E-value=17 Score=32.31 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=33.3
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
....+..+||++|||....+..+..+ ..++....+ .+.-|+++-||.|...
T Consensus 225 wid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 225 WIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----EKPNIFILNNKWDASA 275 (749)
T ss_pred HHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----cCCcEEEEechhhhhc
Confidence 55678889999999998766543332 234443333 2345777888889753
No 368
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=78.81 E-value=3.6 Score=29.18 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=23.9
Q ss_pred cccCcEEEEEEeCCChhhH-HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESF-DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-..|.++++.|....... .....+..++.. .- +||.||+|+
T Consensus 116 ~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad-~ivlnk~dl 158 (158)
T cd03112 116 RYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------AD-RILLNKTDL 158 (158)
T ss_pred ceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CC-EEEEecccC
Confidence 3458899999997653221 111223333333 12 468899996
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=78.59 E-value=9.4 Score=29.81 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=42.1
Q ss_pred CcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 17 ADGCIIVYSLIDK-ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 17 ad~iilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
.|.+++|.|.+.. +.+.. ...+.+.. -+.-+|.||.|... ..-.+..++...+.++..++ +|+ +
T Consensus 191 ~~~~~LVl~a~~~~~~~~~----~~~f~~~~----~~~g~IlTKlDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq-~ 255 (272)
T TIGR00064 191 PDEVLLVLDATTGQNALEQ----AKVFNEAV----GLTGIILTKLDGTA----KGGIILSIAYELKLPIKFIG--VGE-K 255 (272)
T ss_pred CceEEEEEECCCCHHHHHH----HHHHHhhC----CCCEEEEEccCCCC----CccHHHHHHHHHCcCEEEEe--CCC-C
Confidence 8899999999753 23332 23333222 14567899999642 23344455556677777766 777 7
Q ss_pred HHHHH
Q psy2792 96 IYQAF 100 (173)
Q Consensus 96 v~~lf 100 (173)
++++-
T Consensus 256 ~~dl~ 260 (272)
T TIGR00064 256 IDDLA 260 (272)
T ss_pred hHhCc
Confidence 77663
No 370
>KOG3929|consensus
Probab=76.97 E-value=4.6 Score=31.64 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.1
Q ss_pred CCCCcEEEEEeCCCCC
Q psy2792 48 VNNVPVMLLANKLDLE 63 (173)
Q Consensus 48 ~~~~piilv~NK~Dl~ 63 (173)
+-.+|++|||.|.|.-
T Consensus 188 P~P~PV~IVgsKYDvF 203 (363)
T KOG3929|consen 188 PFPVPVVIVGSKYDVF 203 (363)
T ss_pred CCCCceEEeccchhhh
Confidence 3458999999999964
No 371
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=76.34 E-value=6.2 Score=28.40 Aligned_cols=31 Identities=13% Similarity=-0.039 Sum_probs=20.4
Q ss_pred HHHHhhhcCCeEEEEcccCCcccHHHHHHHHH
Q psy2792 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104 (173)
Q Consensus 73 ~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~ 104 (173)
........|+.++.+|++++. +++++...+.
T Consensus 4 ~~~~y~~~gy~v~~~S~~~~~-g~~~l~~~l~ 34 (161)
T PF03193_consen 4 LLEQYEKLGYPVFFISAKTGE-GIEELKELLK 34 (161)
T ss_dssp HHHHHHHTTSEEEE-BTTTTT-THHHHHHHHT
T ss_pred HHHHHHHcCCcEEEEeCCCCc-CHHHHHHHhc
Confidence 344556677777888888777 7777766554
No 372
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.00 E-value=16 Score=23.54 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=8.6
Q ss_pred HHHHHHhhhcCCeEEEE
Q psy2792 71 SLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 71 ~~~~~~~~~~~~~~~e~ 87 (173)
..+...|++.+.+++.+
T Consensus 65 ~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 34455555555555444
No 373
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=75.92 E-value=9.3 Score=29.43 Aligned_cols=11 Identities=0% Similarity=0.051 Sum_probs=6.2
Q ss_pred cEEEEEeCCCC
Q psy2792 52 PVMLLANKLDL 62 (173)
Q Consensus 52 piilv~NK~Dl 62 (173)
++++|.||+|.
T Consensus 151 ~~ivV~T~~d~ 161 (249)
T cd01853 151 NAIVVLTHAAS 161 (249)
T ss_pred CEEEEEeCCcc
Confidence 45555566554
No 374
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.10 E-value=28 Score=26.12 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=33.6
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
+....+..||.+|++...+ ..++..+...+.++.+.. ....++-+|.|+.|..
T Consensus 129 ~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 129 ITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcc
Confidence 5667788999999999874 445555553232333211 1345677899999853
No 375
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=74.69 E-value=32 Score=25.42 Aligned_cols=66 Identities=17% Similarity=0.028 Sum_probs=38.9
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
+-||.+|++.+.+ ..++..+...++.+.+.....+.+ ..+|.|+.+.. ...+...++.+..+..++
T Consensus 140 ~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~~~~~~~~~~vl 206 (212)
T cd02117 140 GKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETELIDAFAERLGTQVI 206 (212)
T ss_pred ccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHHHHHHHHHHcCCCEE
Confidence 3799999999874 445545544444444433222444 45899999953 223445666666665544
No 376
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=73.19 E-value=14 Score=24.78 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=28.6
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL 60 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 60 (173)
++|+..+|+|.. .+..+.....+..+.... .++|+++++++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCC
Confidence 456655555554 455555567788888776 789999999865
No 377
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=71.32 E-value=26 Score=30.04 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE--cccCCcccHHHHHHHHHHHHh
Q psy2792 32 FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV--SVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 32 ~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~--Sak~g~~~v~~lf~~l~~~i~ 108 (173)
|.++..-++.++.+ ++|+||..|+..-..+.+ .+...++|.+.|+.+..+ =++-|. |-.+|-+.+++.+-
T Consensus 342 ~~NL~~Hi~n~~~f----g~p~VVaiN~F~~Dt~~E--i~~v~~~~~~~g~~~~~~~~~~~GG~-Ga~eLA~~Vi~a~e 413 (524)
T cd00477 342 FANLRKHIENIKKF----GVPVVVAINKFSTDTDAE--LALVRKLAEEAGAFVAVSEHWAEGGK-GAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCEEEehhhhhhhh-hHHHHHHHHHHHhc
Confidence 34555555555553 599999999987432222 345677888888775544 345666 88888888887665
No 378
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=70.23 E-value=34 Score=25.77 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=34.8
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.....+..+|.+|+|...+ ..++..+...++.+.... ..++.+|.|+++-
T Consensus 126 ~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~ 175 (261)
T TIGR01968 126 GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP 175 (261)
T ss_pred HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence 3445677899999998874 456777766666665533 2367788899884
No 379
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=69.67 E-value=5.7 Score=26.65 Aligned_cols=31 Identities=29% Similarity=0.173 Sum_probs=18.0
Q ss_pred EEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEccc
Q psy2792 56 LANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVSVA 90 (173)
Q Consensus 56 v~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak 90 (173)
++||+|+.. ..+....+.+++. ..++.|||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 689999743 3455556665554 678999986
No 380
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=69.48 E-value=20 Score=26.02 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 30 ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 30 ~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
+--+++..|+.++... .+.++||-|.. +..+..++..+++.|+.--.|
T Consensus 46 ~~tpe~~~W~~e~k~~----gi~v~vvSNn~---------e~RV~~~~~~l~v~fi~~A~K 93 (175)
T COG2179 46 DATPELRAWLAELKEA----GIKVVVVSNNK---------ESRVARAAEKLGVPFIYRAKK 93 (175)
T ss_pred CCCHHHHHHHHHHHhc----CCEEEEEeCCC---------HHHHHhhhhhcCCceeecccC
Confidence 4456788999999874 47888888843 355677888889988764333
No 381
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=68.74 E-value=30 Score=29.38 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE--EEcccCCcccHHHHHHHHHHHHhc
Q psy2792 32 FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH--EVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 32 ~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~--e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
|.++...++.++.+ ++|+||..||.--..+. ..+...+++.+.++++. ++=|+-|. |-.+|-+.++..+-+
T Consensus 355 ~aNL~~Hi~Nikkf----gvp~VVAIN~F~tDt~~--Ei~~i~~~~~~~gv~~~ls~vwakGg~-Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 355 FANLLKHIENIKKF----GVPVVVAINKFPTDTEA--EIAAIEKLCEEHGVEVALSEVWAKGGE-GGIELAKKVVEAIEQ 427 (554)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEeccCCCCCHH--HHHHHHHHHHHcCCceeehhhhhccCc-cHHHHHHHHHHHHhC
Confidence 33444445555543 59999999997532211 23445678888886643 45577788 888898888888776
Q ss_pred C
Q psy2792 110 G 110 (173)
Q Consensus 110 ~ 110 (173)
.
T Consensus 428 ~ 428 (554)
T COG2759 428 N 428 (554)
T ss_pred C
Confidence 3
No 382
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=68.17 E-value=38 Score=29.43 Aligned_cols=69 Identities=6% Similarity=0.062 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE--cccCCcccHHHHHHHHHHHHh
Q psy2792 33 DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV--SVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 33 ~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~--Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.++..-++.++. -++|+||..|+..-..+.+ .+...+++.+.|+.+..+ =++-|. |-.+|-+.+++.+-
T Consensus 388 ~NL~~Hi~n~~~----fg~pvVVaiN~F~~Dt~~E--i~~l~~~~~~~g~~~~v~~~wa~GGe-Ga~eLA~~Vv~a~e 458 (587)
T PRK13507 388 ANLLHHIGTVKK----SGINPVVCINAFYTDTHAE--IAIVRRLAEQAGARVAVSRHWEKGGE-GALELADAVIDACN 458 (587)
T ss_pred HHHHHHHHHHHH----cCCCeEEEeCCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccch-hHHHHHHHHHHHhh
Confidence 344444555554 3599999999986432222 345667888888765433 344566 88888888886655
No 383
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=66.14 E-value=82 Score=26.73 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=47.5
Q ss_pred hhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 29 KESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 29 ~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
+++|...+ .-+.++++. +.|+|++.|=.+=.. .-+.+.+.++.++++.+++.+++..-. -+++..-|.+.|
T Consensus 162 Re~Y~eAEervI~ELk~i----gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~--~~DI~~Il~~vL 233 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEI----GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLR--EEDITRILEEVL 233 (492)
T ss_pred hHHHHHHHHHHHHHHHHh----CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcC--HHHHHHHHHHHH
Confidence 34565553 466777764 489999999887322 223455677788899998888776432 345555455555
Q ss_pred hcCC
Q psy2792 108 RGGP 111 (173)
Q Consensus 108 ~~~~ 111 (173)
++-+
T Consensus 234 yEFP 237 (492)
T PF09547_consen 234 YEFP 237 (492)
T ss_pred hcCC
Confidence 6644
No 384
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=66.02 E-value=16 Score=31.55 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc--ccCCcccHHHHHHHHHHHH
Q psy2792 32 FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS--VADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 32 ~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S--ak~g~~~v~~lf~~l~~~i 107 (173)
|.++..-++.++. -++|+||..|+.--..+.+ .+...++|.+.|+.+..+. ++-|. |-.+|-+.+++.+
T Consensus 357 ~~NL~rHIeNik~----fGvpvVVAIN~F~tDT~aE--i~~I~~~~~~~Gv~~avs~~wa~GGe-Ga~eLA~~Vv~a~ 427 (557)
T PF01268_consen 357 FANLERHIENIKK----FGVPVVVAINRFPTDTDAE--IELIRELCEELGVRAAVSEHWAKGGE-GAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHHHHC----TT--EEEEEE--TTS-HHH--HHHHHHHCCCCCEEEEEC-HHHHGGG-GCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHh----cCCCeEEEecCCCCCCHHH--HHHHHHHHHhCCCCEEEechhhcccc-cHHHHHHHHHHHh
Confidence 4455555555555 4599999999976432222 3456678888888744333 44566 8888888888887
No 385
>KOG0467|consensus
Probab=65.60 E-value=13 Score=33.44 Aligned_cols=51 Identities=14% Similarity=0.352 Sum_probs=33.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~D 61 (173)
++|.-++ ...+..+=+|++++.+|+.. .++..-+.. |. .+...+||.||+|
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~---------~~~~~~lvinkid 135 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI---------EGLKPILVINKID 135 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH---------ccCceEEEEehhh
Confidence 4666663 44555667899999999865 233333322 32 3466789999999
No 386
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=65.21 E-value=34 Score=27.38 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=41.8
Q ss_pred cCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcc
Q psy2792 16 WADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSP 94 (173)
Q Consensus 16 ~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~ 94 (173)
..+.+++|.|.+... .+..+ ..+.+.. -+.-+|.||.|.... .-.+...+...++++..++ +|+
T Consensus 232 ~p~~~~LVl~a~~g~~~~~~a----~~f~~~~----~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq- 296 (318)
T PRK10416 232 APHEVLLVLDATTGQNALSQA----KAFHEAV----GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGE- 296 (318)
T ss_pred CCceEEEEEECCCChHHHHHH----HHHHhhC----CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCC-
Confidence 467788999987532 23222 2222211 244688999995321 2344555666788877777 787
Q ss_pred cHHHHH
Q psy2792 95 AIYQAF 100 (173)
Q Consensus 95 ~v~~lf 100 (173)
+++++-
T Consensus 297 ~~~Dl~ 302 (318)
T PRK10416 297 GIDDLQ 302 (318)
T ss_pred ChhhCc
Confidence 887663
No 387
>PRK14974 cell division protein FtsY; Provisional
Probab=64.84 E-value=28 Score=28.19 Aligned_cols=70 Identities=11% Similarity=0.011 Sum_probs=40.6
Q ss_pred cCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcc
Q psy2792 16 WADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSP 94 (173)
Q Consensus 16 ~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~ 94 (173)
+.|.+++|.|.+... ..+.+ ..+.... + .--+|.||.|.... .-.+...+...+.++..++ +|+
T Consensus 252 ~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~-~~giIlTKlD~~~~----~G~~ls~~~~~~~Pi~~i~--~Gq- 316 (336)
T PRK14974 252 KPDLVIFVGDALAGNDAVEQA----REFNEAV---G-IDGVILTKVDADAK----GGAALSIAYVIGKPILFLG--VGQ- 316 (336)
T ss_pred CCceEEEeeccccchhHHHHH----HHHHhcC---C-CCEEEEeeecCCCC----ccHHHHHHHHHCcCEEEEe--CCC-
Confidence 578888999886532 22222 2222211 1 24577899996431 2234444555677777666 788
Q ss_pred cHHHHH
Q psy2792 95 AIYQAF 100 (173)
Q Consensus 95 ~v~~lf 100 (173)
+|+++.
T Consensus 317 ~v~Dl~ 322 (336)
T PRK14974 317 GYDDLI 322 (336)
T ss_pred Chhhcc
Confidence 887764
No 388
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=63.09 E-value=66 Score=24.60 Aligned_cols=62 Identities=19% Similarity=0.082 Sum_probs=35.7
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCCCCCccCCHHHHHHHhhhcCCe
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQVDESLGRSTAVKYNCT 83 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 83 (173)
+.-||.+|++... +..++..+...+..+.......++++ .+|.|+.+. .....++.+.++..
T Consensus 138 l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~~~~~~~~g~~ 200 (270)
T PRK13185 138 LQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLIDKFNEAVGLK 200 (270)
T ss_pred hhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHHHHHHHHcCCC
Confidence 5579999998865 44556655555444443221245664 478899773 23334455555544
No 389
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=62.98 E-value=26 Score=26.91 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=37.3
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCC
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL 60 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 60 (173)
-.....+|.+|..|..-+...-+++..-++-+.++. .++.|+.+|-|--
T Consensus 149 l~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r-~~~tpVgivrnag 197 (249)
T COG1010 149 LRAAAEADFVIALYNPISKRRPEQLGRAFEILREHR-SPDTPVGIVRNAG 197 (249)
T ss_pred HHHHhhCCEEEEEECCccccchHHHHHHHHHHHHhc-CCCCcEEEEecCC
Confidence 345668999999998877665566677777777777 4689999987754
No 390
>KOG2486|consensus
Probab=62.95 E-value=1.9 Score=33.94 Aligned_cols=89 Identities=11% Similarity=0.020 Sum_probs=48.3
Q ss_pred cHhhhcccCcE---EEEEEeCCCh-hhH-HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----CCHHHHHH----
Q psy2792 9 TLTAMICWADG---CIIVYSLIDK-ESF-DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----VDESLGRS---- 75 (173)
Q Consensus 9 ~~~~y~~~ad~---iilv~d~~~~-~s~-~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~---- 75 (173)
++..|+-+-+- +++..|++-+ ..- .....|+.+ .++|+.+|.||||...... -....+..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~ 281 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQG 281 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeehhhhhhhccccccCccccceeehhh
Confidence 77777765443 4444455432 111 112334332 5799999999999642110 00011111
Q ss_pred Hh---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792 76 TA---VKYNCTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 76 ~~---~~~~~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
+. .....+++.+|+.++. |+++|.-.+..
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~-Grd~Ll~~i~q 313 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSL-GRDLLLLHIAQ 313 (320)
T ss_pred ccccceeccCCceeeeccccc-Cceeeeeehhh
Confidence 11 1122456789999999 99988766653
No 391
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=61.59 E-value=9.9 Score=27.40 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=24.2
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
..+.+|.|+|..+-.........+.....+. =++|.||+|+.+
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~ 155 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVS 155 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHH
T ss_pred cccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCC
Confidence 4678999999976433333333222222222 267889999864
No 392
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=61.58 E-value=23 Score=25.29 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=38.1
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
.....+..+|.+|++.+.+. .+...+..+++.+..... .-..+.+|.|+++..
T Consensus 109 ~~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 109 PVRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPG 161 (195)
T ss_dssp HHHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSC
T ss_pred HHHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCC
Confidence 34567789999999999864 557777777777776541 112567899999865
No 393
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=61.20 E-value=67 Score=24.00 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=30.5
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDL 62 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl 62 (173)
.....+..||.+|+|.+.+- .++.......+.+.. .+.+ +.+|.|+.+-
T Consensus 123 ~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~----~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 123 DAVTALAAADELLLVVNPEI-SSITDALKTKIVAEK----LGTAILGVVLNRVTR 172 (251)
T ss_pred HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHh----cCCceEEEEEECCCc
Confidence 44455778999999998753 455544333333322 2344 5689999985
No 394
>KOG1249|consensus
Probab=60.95 E-value=4 Score=34.89 Aligned_cols=83 Identities=14% Similarity=-0.015 Sum_probs=45.2
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHh---------hhcC-----
Q psy2792 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTA---------VKYN----- 81 (173)
Q Consensus 18 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~---------~~~~----- 81 (173)
-.++.|.|.+|..- .....+....+ ..-.++++||+|+.....-.. ....... -++.
T Consensus 112 ~~~~~vvd~~d~p~-----~i~p~~~~~v~--~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~ 184 (572)
T KOG1249|consen 112 ALARKVVDLSDEPC-----SIDPLLTNDVG--SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFD 184 (572)
T ss_pred cceEEeeecccCcc-----ccccchhhccc--CCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccc
Confidence 45666777776432 12233333332 222799999999864332111 1111100 0000
Q ss_pred C-eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 82 C-TFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 82 ~-~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+ ....+++++|. |++++...|+...-
T Consensus 185 f~~~~~~r~ktgy-g~eeLI~~lvd~~d 211 (572)
T KOG1249|consen 185 FDHVDLIRAKTGY-GIEELIVMLVDIVD 211 (572)
T ss_pred hhhhhhhhhhhcc-cHHHHHHHhhheee
Confidence 1 13578999999 99999988876553
No 395
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=60.24 E-value=75 Score=24.28 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=28.7
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDL 62 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 62 (173)
+..||.+|++...+ ..++..+...++.+.......++++ .+|.|++|.
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 67899999988764 3445554444443333221245554 478899984
No 396
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=60.18 E-value=28 Score=28.54 Aligned_cols=43 Identities=16% Similarity=0.027 Sum_probs=27.9
Q ss_pred CcEEEEEeCCCCCC-CccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792 51 VPVMLLANKLDLEH-LRQVDESLGRSTAVKYNCTFHEVSVADNS 93 (173)
Q Consensus 51 ~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~ 93 (173)
.|+++|+|+.|..- ...-..+....++...+..++.+||+-..
T Consensus 200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E~ 243 (364)
T PRK09601 200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIEA 243 (364)
T ss_pred CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 69999999998521 11111334555666678889999986433
No 397
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=60.06 E-value=53 Score=25.14 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=55.4
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|.|..-.+....+..+|.||+=.-.+..+.-+. ...|+.++.+.. ..++|.-|+.+++.-...+. ......++.+
T Consensus 91 leG~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~-~~~ip~~Vl~Tr~~~~~~~~-~~~~~~e~~~- 167 (231)
T PF07015_consen 91 LEGGASELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAE-RRDIPAAVLFTRVPAARLTR-AQRIISEQLE- 167 (231)
T ss_pred CCCCCchhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhh-CCCCCeeEEEecCCcchhhH-HHHHHHHHHh-
Confidence 445544466667889999999877764332222 234665555433 37799999999987321111 1112223333
Q ss_pred cCCeEEEEcccCCcccHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFD 101 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~ 101 (173)
++++|.+.-.+.. -..++|.
T Consensus 168 -~lpvl~t~l~eR~-Af~~m~~ 187 (231)
T PF07015_consen 168 -SLPVLDTELHERD-AFRAMFS 187 (231)
T ss_pred -cCCccccccccHH-HHHHHHH
Confidence 4778887776665 5555554
No 398
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=59.67 E-value=20 Score=23.76 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=35.3
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 18 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 87 (173)
+.-+++++.++...+..+..+++.+++.. ..++++++-|+-.... . +.+...|...+..
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~------~----~~~~~~G~D~~~~ 108 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRD------F----KFLKEIGVDAYFG 108 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcC-CCCCeEEEECCCCChh------H----HHHHHcCCeEEEC
Confidence 33344555566667888899999998864 2267766666543320 1 2455667765543
No 399
>CHL00175 minD septum-site determining protein; Validated
Probab=58.08 E-value=73 Score=24.56 Aligned_cols=49 Identities=20% Similarity=0.106 Sum_probs=32.5
Q ss_pred HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
....+..+|.+|+|.+.+ ..++..+...+..+.+.. ...+.+|.|+++-
T Consensus 142 ~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~---~~~~~lvvN~~~~ 190 (281)
T CHL00175 142 FINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG---IYNVKLLVNRVRP 190 (281)
T ss_pred HHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC---CCceEEEEeccCh
Confidence 344567899999998764 456666666666665532 1245678899874
No 400
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=56.79 E-value=84 Score=27.43 Aligned_cols=68 Identities=6% Similarity=0.022 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh-cCCeEEEE--cccCCcccHHHHHHHHHHHHh
Q psy2792 34 YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK-YNCTFHEV--SVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 34 ~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~--Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++..-++.++. -++|+||..|+..-..+.+ .+...++|.+ .++.+..+ =++-|+ |-.+|-+.+++.+-
T Consensus 381 NL~~Hi~n~~~----fg~pvVVaiN~F~~Dt~~E--i~~~~~~~~~~~~~~~~~~~~wa~GGe-Ga~eLA~~Vv~a~e 451 (578)
T PRK13506 381 NLKWHINNVAQ----YGLPVVVAINRFPTDTDEE--LEWLKEAVLLTGAFGCEISEAFAQGGE-GATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHHHHH----cCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhccch-hHHHHHHHHHHHhh
Confidence 44444555554 4599999999976432222 3445667777 56565443 345667 88888888887665
No 401
>KOG0085|consensus
Probab=55.01 E-value=51 Score=25.60 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=55.0
Q ss_pred cHhhhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792 9 TLTAMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR------------ 66 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------ 66 (173)
.|-+++.+.-.++|+..++.. ...++....+..|..+.=-.+.++|+..||.||.++.
T Consensus 215 KWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe 294 (359)
T KOG0085|consen 215 KWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPE 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcc
Confidence 566666666666665544332 1222223333334333212567899999999985321
Q ss_pred ----cCCHHHHHHHhhh----cC-----Ce-EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 ----QVDESLGRSTAVK----YN-----CT-FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ----~v~~~~~~~~~~~----~~-----~~-~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.-+.+.+.+|.-+ .+ +- --.++|.+-. ||.-+|..+-+.+++
T Consensus 295 ~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~-NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 295 FDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTE-NIRFVFAAVKDTILQ 350 (359)
T ss_pred cCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccch-hHHHHHHHHHHHHHH
Confidence 1112233333221 11 11 2346677777 999999988887765
No 402
>PRK10818 cell division inhibitor MinD; Provisional
Probab=54.40 E-value=82 Score=24.06 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=33.7
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh-----CCCCCcEEEEEeCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR-----AVNNVPVMLLANKLDL 62 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~piilv~NK~Dl 62 (173)
.....+..+|.+|++.+.+ ..++..+..+++.+.... ...++...+|.|..|-
T Consensus 128 ~~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 128 GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred HHHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 3444578899999998876 446666666666654321 0123445788898884
No 403
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.35 E-value=23 Score=33.57 Aligned_cols=49 Identities=27% Similarity=0.242 Sum_probs=32.3
Q ss_pred cccCcEEEEEEeCCChhh----H--HH---HHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 14 ICWADGCIIVYSLIDKES----F--DY---AVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s----~--~~---~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
.+-.|+||+..|+.+--+ . .. +..-+.++.+.- .-..|+.|++||.|+.
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLL 269 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccc
Confidence 456899999999876311 1 11 222344444443 3679999999999985
No 404
>PLN02759 Formate--tetrahydrofolate ligase
Probab=51.58 E-value=77 Score=27.90 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEE--cccCCcccHHHHHHHHHHHHh
Q psy2792 35 AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEV--SVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 35 ~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~--Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+..-++.++. -++|+||..|+..-..+.+ .+...++|.+.|+ .+..+ =++-|. |-.+|-+.+++.+-
T Consensus 439 L~~Hi~n~~~----fg~pvVVaiN~F~~Dt~~E--i~~v~~~~~~~ga~~~~~~~~wa~GGe-Ga~eLA~~Vv~a~e 508 (637)
T PLN02759 439 LARHIENTKS----YGVNVVVAINMFATDTEAE--LEAVRQAALAAGAFDAVLCTHHAHGGK-GAVDLGEAVQKACE 508 (637)
T ss_pred HHHHHHHHHH----cCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhcccH-HHHHHHHHHHHHHh
Confidence 3334444444 4599999999987433222 3456778888884 65443 345666 88889888887665
No 405
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=51.02 E-value=16 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=22.9
Q ss_pred CeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 82 CTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 82 ~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++++..||+++. |++.+++.+...+.
T Consensus 241 ~pv~~gSa~~~~-G~~~ll~~~~~~~p 266 (268)
T cd04170 241 VPVLCGSALTNI-GVRELLDALVHLLP 266 (268)
T ss_pred EEEEEeeCCCCc-CHHHHHHHHHHhCC
Confidence 568999999999 99999999987654
No 406
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=51.00 E-value=38 Score=24.10 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=28.0
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
..++|.+|+-|. .+-+.+..++..+.... +.+.+++|||-|---
T Consensus 67 ~~~~D~vvly~P----KaK~e~~~lL~~l~~~L-~~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 67 DQDFDTVVLYWP----KAKAEAQYLLANLLSHL-PPGTEIFVVGENKGG 110 (155)
T ss_dssp HTT-SEEEEE------SSHHHHHHHHHHHHTTS--TT-EEEEEEEGGGT
T ss_pred ccCCCEEEEEcc----CcHHHHHHHHHHHHHhC-CCCCEEEEEecCccc
Confidence 346899999885 34455666777777665 468899999987654
No 407
>KOG0463|consensus
Probab=50.98 E-value=45 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.189 Sum_probs=15.3
Q ss_pred CCeEEEEcccCCcccHHHHH
Q psy2792 81 NCTFHEVSVADNSPAIYQAF 100 (173)
Q Consensus 81 ~~~~~e~Sak~g~~~v~~lf 100 (173)
-|++|.+|..+|+ |+.-+-
T Consensus 332 ~CPIFQvSNVtG~-NL~LLk 350 (641)
T KOG0463|consen 332 VCPIFQVSNVTGT-NLPLLK 350 (641)
T ss_pred ccceEEeccccCC-ChHHHH
Confidence 3678999999999 987543
No 408
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=50.44 E-value=19 Score=24.37 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=26.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
.+..+|+.=|++-++....+ ..+-+ ..++|++.|++|.+|-
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l----~~lc~---~~~vpyv~V~sk~~LG 83 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHL----PALCE---EKNVPYVYVGSKKELG 83 (116)
T ss_pred CCcEEEEecCCCHHHHHHHH----HHHHH---hcCCCEEEeCCHHHHH
Confidence 47888888887634333332 22222 2579999999998873
No 409
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=50.42 E-value=1e+02 Score=22.76 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=47.1
Q ss_pred ccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 15 CWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 15 ~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
.+||.+-+|.++... ..++.+..++..+.+.+ .++|+.++.....+.. . ....+-..+.+.|..|+.+|
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~--~g~~lkvI~e~~~l~~-~--~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEAC--GGAPLKVILETGLLTD-E--EIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhc--CCCeEEEEEecCCCCH-H--HHHHHHHHHHHhCCCEEEcC
Confidence 379999999987632 23455666777777776 3688877777766631 1 12334556778899999998
No 410
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=50.28 E-value=1.6e+02 Score=25.97 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-hcC-CeEEEE--cccCCcccHHHHHHHHHHHHhc
Q psy2792 34 YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV-KYN-CTFHEV--SVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 34 ~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~-~~~~e~--Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++..-++.++. -++|+||..|+.--..+.+ .+...++|. +.| +.+..+ =++-|. |-.+|-+.+++.+-+
T Consensus 425 NL~~Hien~~~----fgvpvVVAIN~F~tDT~~E--i~~i~~~~~~~~ga~~~~~s~~~a~GG~-Ga~eLA~~Vv~a~~~ 497 (625)
T PTZ00386 425 NLQRHIQNIRK----FGVPVVVALNKFSTDTDAE--LELVKELALQEGGAADVVVTDHWAKGGA-GAVDLAQALIRVTEN 497 (625)
T ss_pred HHHHHHHHHHH----cCCCeEEEecCCCCCCHHH--HHHHHHHHHHhcCCccEEEechhhccch-hHHHHHHHHHHHHhc
Confidence 34444444444 4599999999976432222 345667777 778 454433 345566 888888888876643
No 411
>KOG1487|consensus
Probab=50.24 E-value=21 Score=28.13 Aligned_cols=76 Identities=11% Similarity=0.127 Sum_probs=45.5
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
....+.+=||.|-- .++.-+.... .-+|.+.+.||+|-..-.+.+.. ......+.+||-++- |
T Consensus 206 hsAdi~Lr~DaT~D-------dLIdvVegnr--~yVp~iyvLNkIdsISiEELdii-------~~iphavpISA~~~w-n 268 (358)
T KOG1487|consen 206 HSADIALRFDATAD-------DLIDVVEGNR--IYVPCIYVLNKIDSISIEELDII-------YTIPHAVPISAHTGW-N 268 (358)
T ss_pred cchheeeecCcchh-------hhhhhhccCc--eeeeeeeeecccceeeeecccee-------eeccceeeccccccc-c
Confidence 33445556776642 2222333221 35899999999996432221111 011336899999999 9
Q ss_pred HHHHHHHHHHHHh
Q psy2792 96 IYQAFDHLLTESR 108 (173)
Q Consensus 96 v~~lf~~l~~~i~ 108 (173)
++++++.+-+.+.
T Consensus 269 ~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 269 FDKLLEKMWEYLK 281 (358)
T ss_pred hHHHHHHHhhcch
Confidence 9999888776553
No 412
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=50.09 E-value=88 Score=21.99 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=32.1
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCC
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDL 62 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl 62 (173)
..+|.+|+|...+ +.++..+..+++.+.+.. .+ +-+|.|+.+.
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~----~~~~gvv~N~~~~ 133 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN----IPILGVVENMSYF 133 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC----CCeEEEEEcCCcc
Confidence 5789999998765 457777788888877643 34 4578999885
No 413
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=49.99 E-value=87 Score=22.05 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=21.5
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
..|.+++|+|...... ...+...+.+.. + ..-+|.||.|..
T Consensus 112 ~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~ 152 (173)
T cd03115 112 KPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGD 152 (173)
T ss_pred CCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCC
Confidence 4777888888754321 222333333322 2 245666888854
No 414
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=49.64 E-value=87 Score=23.71 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=36.3
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCcEEEEEeCCC
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLD 61 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~NK~D 61 (173)
|+|.........+..||.+|+.+..+ +.+++....++..+.+.. ...+++..+|.|.++
T Consensus 91 ~pp~~~~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 91 THGGSSELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCccHHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 44444345666788899999888764 344544444443333221 125678889999987
No 415
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=48.54 E-value=35 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=27.7
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCC
Q psy2792 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL 60 (173)
Q Consensus 18 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 60 (173)
++.|..-..+-+.|+++-.+|+.+.--.. +.-.+|++|||-
T Consensus 85 ~vYivtaamdhp~s~~dK~eWl~E~FPFi--~~qn~vfCgnKn 125 (180)
T COG4502 85 NVYIVTAAMDHPKSCEDKGEWLKEKFPFI--SYQNIVFCGNKN 125 (180)
T ss_pred eEEEEEeccCCchhHHHHHHHHHHHCCCC--ChhhEEEecCCC
Confidence 45555545556889998888987765443 334588999983
No 416
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=48.29 E-value=90 Score=25.24 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=23.0
Q ss_pred EEEEeCCCCCCCccCCHHHHHHHhhh-cC--CeEEEEcccCCcccHHHHHH
Q psy2792 54 MLLANKLDLEHLRQVDESLGRSTAVK-YN--CTFHEVSVADNSPAIYQAFD 101 (173)
Q Consensus 54 ilv~NK~Dl~~~~~v~~~~~~~~~~~-~~--~~~~e~Sak~g~~~v~~lf~ 101 (173)
+||.||+|+.+..++ +........ +. ..++++.- ... ....+|.
T Consensus 177 ~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~~-~~v-~~~~ll~ 223 (341)
T TIGR02475 177 LVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEASH-GEV-DARVLLG 223 (341)
T ss_pred EEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEccc-CCC-CHHHHhC
Confidence 678899998754332 223333333 33 34666542 223 5556654
No 417
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=47.92 E-value=1.2e+02 Score=23.06 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=28.6
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDL 62 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 62 (173)
+.-||.+|++... +..++..+...+..+.+.....++++ .+|.|++|-
T Consensus 136 l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 136 LQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred hhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 6679999998755 44455555444444433221245553 578899884
No 418
>KOG1143|consensus
Probab=47.88 E-value=1.3e+02 Score=25.17 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=44.2
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------------------cCCHHH
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR------------------------QVDESL 72 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------------------~v~~~~ 72 (173)
-|.+++|++.+.--... .++.+..+.. -++|++++.+|.||.+.. .-+..+
T Consensus 275 Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~dd 349 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDD 349 (591)
T ss_pred CceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHH
Confidence 46777888765421111 1122233333 359999999999995421 111222
Q ss_pred HHH----HhhhcCCeEEEEcccCCcccHHHHH
Q psy2792 73 GRS----TAVKYNCTFHEVSVADNSPAIYQAF 100 (173)
Q Consensus 73 ~~~----~~~~~~~~~~e~Sak~g~~~v~~lf 100 (173)
+.. .+..+-.++|.+|..+|+ +++-+-
T Consensus 350 Av~Aaq~~~s~nivPif~vSsVsGe-gl~ll~ 380 (591)
T KOG1143|consen 350 AVKAAQELCSGNIVPIFAVSSVSGE-GLRLLR 380 (591)
T ss_pred HHHHHHHhccCCceeEEEEeecCcc-chhHHH
Confidence 222 222233568999999999 876443
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=47.43 E-value=72 Score=20.23 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=21.7
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHH
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQ 40 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~ 40 (173)
.....+..+|.+|++.+.+ ..++..+..+++
T Consensus 54 ~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 54 LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 3446678899999998874 456666666655
No 420
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=46.98 E-value=56 Score=22.41 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=38.4
Q ss_pred cEEEEEeCCCCCCCc---cCC---HHHHHHHhhhcC-----CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 52 PVMLLANKLDLEHLR---QVD---ESLGRSTAVKYN-----CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 52 piilv~NK~Dl~~~~---~v~---~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
-++|+|.|.+--+-. ... -+...++..+.| +.++.+||.+++ .+.+.++..++.+.+
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~e-kf~e~~~efv~~i~~ 123 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGE-KFAETINEFVERIKE 123 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHH-HHHHHHHHHHHHHHH
Confidence 478889988742100 000 122334445555 458999999999 999999999998877
No 421
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=46.73 E-value=98 Score=21.58 Aligned_cols=75 Identities=8% Similarity=0.102 Sum_probs=43.2
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHH--------HHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCe
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQN--------LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCT 83 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~--------i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 83 (173)
.|+. .+.++|.||+++++..+..-.|+.. ..+.......|.+.|..+..-. +
T Consensus 51 ~fl~-~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP~~avI~~~~~~------------------~- 110 (136)
T cd02990 51 QYLS-QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLPAILIIMGKRSS------------------N- 110 (136)
T ss_pred HHHH-cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCCeEEEEEecCCc------------------e-
Confidence 3554 5899999999998655443334322 1111113568988887776520 1
Q ss_pred EEEEcccCCcccHHHHHHHHHHHH
Q psy2792 84 FHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 84 ~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
-.++...|..+++++...|...+
T Consensus 111 -~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 111 -EVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred -EEEEEEECCCCHHHHHHHHHHHH
Confidence 12233344447788877776543
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.70 E-value=99 Score=25.99 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=35.2
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
.-+.|.+++|.|.+.. .+...+...+.... + ..=+|.||.|-.. ..-.+...+...++++..+.
T Consensus 210 ~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~----~~G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 210 ILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA----RGGAALSVRSVTGKPIKFIG 273 (428)
T ss_pred hhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc----cccHHHHHHHHHCcCEEEEe
Confidence 3357889999998753 23333444443322 1 2356789999532 12335555566666644443
No 423
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=46.56 E-value=34 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=26.7
Q ss_pred CcEEEEEeCCC--CCCCccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792 51 VPVMLLANKLD--LEHLRQVDESLGRSTAVKYNCTFHEVSVADNS 93 (173)
Q Consensus 51 ~piilv~NK~D--l~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~ 93 (173)
.|+++|+|+.| +..... .......++...+..++.+||+-..
T Consensus 196 KP~i~v~N~~e~d~~~~~~-~~~~~~~~~~~~~~~~i~~sa~~E~ 239 (274)
T cd01900 196 KPVLYVANVSEDDLANGNN-KVLKVREIAAKEGAEVIPISAKIEA 239 (274)
T ss_pred CCceeecccCHHHhccccH-HHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 59999999998 321111 1223344555667889999997544
No 424
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=46.46 E-value=24 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=22.8
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.+..+|+.=|++..+.-..+.. +-+ ..++|++.+++|.||
T Consensus 42 ka~LVilA~D~s~~~~~~~i~~----lc~---~~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 42 IAKLVVIAEDVEPPEIVAHLPA----LCE---EKGIPYVYVKKKEDL 81 (117)
T ss_pred CccEEEEeCCCCcHHHHHHHHH----HHH---HcCCCEEEeCCHHHH
Confidence 3556666666654322222222 222 257999999988776
No 425
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=45.94 E-value=78 Score=24.19 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=41.7
Q ss_pred hhhcccCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792 11 TAMICWADGCIIVYSLID----KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE 86 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 86 (173)
..+..+.++-++|+-+-. .+...++..+++.+.+......+--|+|+..++ ..+..+++..|+.|+.
T Consensus 139 DiL~~D~~G~~VVIElKR~~a~~~aV~QL~rY~~~l~~~~~~~~VRGilvA~~i~---------~~a~~ll~~~glef~~ 209 (228)
T PF01939_consen 139 DILAKDKDGNLVVIELKRRRADRDAVEQLLRYVELLKRDPGLEPVRGILVAPSIT---------PQARELLEDRGLEFVE 209 (228)
T ss_dssp EEEEE-TTS-EEEEEE-SS-B-HHHHHHHHHHHHHHHHHH--S-EEEEEEES-B----------HHHHHHHHHHT-EEEE
T ss_pred eEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHhhccCCCceeEEEECCCCC---------HHHHHHHHHcCCEEEE
Confidence 345566777777776644 356777777887777655334566788888765 4567788899999998
Q ss_pred Ec
Q psy2792 87 VS 88 (173)
Q Consensus 87 ~S 88 (173)
+.
T Consensus 210 ld 211 (228)
T PF01939_consen 210 LD 211 (228)
T ss_dssp --
T ss_pred ec
Confidence 87
No 426
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=45.55 E-value=1.1e+02 Score=24.49 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred CcEEEEEEeCCChhhHH-HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeEEEEc
Q psy2792 17 ADGCIIVYSLIDKESFD-YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTFHEVS 88 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~S 88 (173)
.+++|.|+|..+-...- .......++.. -=+||.||+|+... .+.........+ ..++++.
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~~~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVAGE----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccCCH----HHHHHHHHHHhCCCCEEEEec
Confidence 47899999986532211 11111122221 12678899998752 133444444433 4555543
No 427
>PRK06242 flavodoxin; Provisional
Probab=45.54 E-value=97 Score=21.19 Aligned_cols=67 Identities=6% Similarity=-0.062 Sum_probs=39.1
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
-+.++|++|+...+-.-.-...+..|++++... .+.+++++++-- ...... .......+...|+.++
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~---~~k~~~~f~t~g-~~~~~~--~~~l~~~l~~~g~~~~ 106 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV---SGKKAFIFSTSG-LPFLKY--HKALKKKLKEKGFEIV 106 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh---cCCeEEEEECCC-CCcchH--HHHHHHHHHHCCCEEE
Confidence 356889999987654333344556666665432 457888888743 222111 3445556666777654
No 428
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=45.49 E-value=72 Score=25.47 Aligned_cols=46 Identities=13% Similarity=-0.006 Sum_probs=33.4
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
.-.++|++|+-|.=+. .+.+.++..+.... +++..|++||.|-|..
T Consensus 34 ~~~~~d~~l~~~pK~~----~e~e~qLa~ll~~~-~~g~~i~v~g~~~~g~ 79 (300)
T COG2813 34 APDDFDAVLLYWPKHK----AEAEFQLAQLLARL-PPGGEIVVVGEKRDGV 79 (300)
T ss_pred ccCCCCEEEEEccCch----HHHHHHHHHHHhhC-CCCCeEEEEecccchH
Confidence 3447999999987554 44455666666655 4788999999999964
No 429
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=45.11 E-value=45 Score=23.00 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=28.4
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVML 55 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piil 55 (173)
..-|+.||..-++...+=+.+..|+..+++.... ..+|+++
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 3457777777777666667778999999885421 4677765
No 430
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=44.99 E-value=33 Score=23.22 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=25.9
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
..++|.+|++=|+.+.........+.+.+.+.. ....+++.|| .|.
T Consensus 17 ~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~GN-HD~ 62 (135)
T cd07379 17 IPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HPHKIVIAGN-HDL 62 (135)
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CCeEEEEECC-CCC
Confidence 357899999999887543333333333333321 1112467788 564
No 431
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.58 E-value=93 Score=21.95 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=26.7
Q ss_pred cCcEEEEEEeCCChh----hHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 16 WADGCIIVYSLIDKE----SFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 16 ~ad~iilv~d~~~~~----s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
..|.|++.+-.+|.. -.+.+...+..+++.. ++.|++++.-.
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~--p~~~iil~~~~ 102 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETH--PDTPILLVSPR 102 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHC--cCCCEEEEecC
Confidence 578888888777642 2344455666666544 56788777654
No 432
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=43.41 E-value=1.6e+02 Score=23.09 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDL 62 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 62 (173)
+..||.+|++.+. ++.++..+...++.+.......++++ -+|.|+.|.
T Consensus 136 l~~AD~viIp~~p-~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 136 LNYADYCIIITDN-GFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred hhcCCEEEEEecC-CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 4569999998876 44566555554444443321234443 488899883
No 433
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=42.61 E-value=80 Score=22.96 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=30.9
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
....+|.+|+|.+... .+...+...++.+.... ...+-+|.||+|..
T Consensus 147 ~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~~---~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAGE-IKKRDVQKAKEQLEQTG---SNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhCC---CCEEEEEEeCcccc
Confidence 4567899999998753 34555655555555432 23466889999964
No 434
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=42.00 E-value=53 Score=25.36 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=42.3
Q ss_pred EeCCChhhHHHHHHHHHH--HHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHH
Q psy2792 24 YSLIDKESFDYAVSTLQN--LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFD 101 (173)
Q Consensus 24 ~d~~~~~s~~~~~~~~~~--i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~ 101 (173)
|++.|...|..+-.|+++ |+.+.....-++- +..+ ..-.+....++...++++ ... .-.++++
T Consensus 17 ~n~~d~~~fr~lVvWLEDqKIR~Y~iedR~~LR------~i~s--~~W~~~~~kYl~dl~cP~------~~~-~~~~~ld 81 (249)
T PF10036_consen 17 FNIDDEEEFRSLVVWLEDQKIRHYKIEDREKLR------NIDS--SDWPKAFEKYLKDLGCPF------SSE-SRQEQLD 81 (249)
T ss_pred CCCCCHHHHHHHHHHHhhhhhccCCHhhHHHHh------cCCc--chHHHHHHHHHHhcCCCC------cch-hHHHHHH
Confidence 567889999999999988 5554311110100 1100 013445667788888887 333 5667788
Q ss_pred HHHHHHhc
Q psy2792 102 HLLTESRG 109 (173)
Q Consensus 102 ~l~~~i~~ 109 (173)
||...+..
T Consensus 82 WLL~~AV~ 89 (249)
T PF10036_consen 82 WLLGLAVR 89 (249)
T ss_pred HHHHHHHH
Confidence 88766654
No 435
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=41.65 E-value=90 Score=20.44 Aligned_cols=45 Identities=18% Similarity=-0.106 Sum_probs=26.2
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
..+++||++|.++|...+++=...+ .-.... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~E----lG~A~a--lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFE----LGYAYA--LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHH----HHHHHH--TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHH----HHHHHH--CCCEEEEEEcCCcc
Confidence 4578899999999984433221111 111111 45899988877653
No 436
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=41.28 E-value=40 Score=24.13 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=25.2
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
.-+..||++|++.-.-+..--..++.|++.+.... -.+.|++++++-
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~-l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNA-LIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhH-hCCCEEEEEEec
Confidence 34677888888766544321223345555442211 245677777663
No 437
>PRK13556 azoreductase; Provisional
Probab=40.79 E-value=53 Score=24.24 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=24.7
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH 45 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~ 45 (173)
..+..||++|+++-+-+-.-=..++.|++.+...
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRA 118 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcC
Confidence 4578999999999876643224457799888764
No 438
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=40.22 E-value=72 Score=28.71 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=30.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCC-CCcEEEEEeCCCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVN-NVPVMLLANKLDLEH 64 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~NK~Dl~~ 64 (173)
..|+||+|..++.......-..++..|....+.. ---+|||.+..|...
T Consensus 201 gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 201 PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 5899999998864333222235666666655321 134788899998753
No 439
>KOG0465|consensus
Probab=40.10 E-value=47 Score=29.30 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
|+|.-++ =...-++--|++|+|+|...----.....|... .+ -++|.|...||.|.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r----y~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR----YNVPRICFINKMDR 168 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh----cCCCeEEEEehhhh
Confidence 7777764 223457778888888886542111222345432 33 35999999999995
No 440
>KOG0459|consensus
Probab=39.72 E-value=23 Score=29.61 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=44.2
Q ss_pred ccCcEEEEEEeCCCh---hhHHHHHH--HHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCCHHH----HHHHhhhcC--
Q psy2792 15 CWADGCIIVYSLIDK---ESFDYAVS--TLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVDESL----GRSTAVKYN-- 81 (173)
Q Consensus 15 ~~ad~iilv~d~~~~---~s~~~~~~--~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~~----~~~~~~~~~-- 81 (173)
.+||..++|.+.-.- .-|+.--. -...+.... .-...|++.||.|-+.- ..-..++ ...+....|
T Consensus 179 sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~--gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n 256 (501)
T KOG0459|consen 179 SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFN 256 (501)
T ss_pred chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh--ccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhccc
Confidence 357888888876321 12332211 112222222 23458889999996421 0001111 222333222
Q ss_pred ----CeEEEEcccCCcccHHHHHH
Q psy2792 82 ----CTFHEVSVADNSPAIYQAFD 101 (173)
Q Consensus 82 ----~~~~e~Sak~g~~~v~~lf~ 101 (173)
..|+.+|..+|. ++.+.-.
T Consensus 257 ~~~d~~f~p~sg~tG~-~~k~~~~ 279 (501)
T KOG0459|consen 257 PKPDKHFVPVSGLTGA-NVKDRTD 279 (501)
T ss_pred CCCCceeeeccccccc-chhhccc
Confidence 458999999999 9887654
No 441
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=39.38 E-value=70 Score=22.53 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=8.5
Q ss_pred cCcEEEEEEeCCCh
Q psy2792 16 WADGCIIVYSLIDK 29 (173)
Q Consensus 16 ~ad~iilv~d~~~~ 29 (173)
+.|+||+.+-.+|.
T Consensus 67 ~~d~vii~~G~ND~ 80 (185)
T cd01832 67 RPDLVTLLAGGNDI 80 (185)
T ss_pred CCCEEEEecccccc
Confidence 56666666655544
No 442
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=38.52 E-value=1.2e+02 Score=25.59 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=31.6
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE 86 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 86 (173)
+..+|.+++|+|.+... +.......+.. .++ .-+|.||.|-.. ..-.+...+...+.++..
T Consensus 203 ~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~a----~~G~~ls~~~~~~~Pi~f 264 (437)
T PRK00771 203 AVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGTA----KGGGALSAVAETGAPIKF 264 (437)
T ss_pred HhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCCC----cccHHHHHHHHHCcCEEE
Confidence 44688999999986642 11122222222 122 356789999532 123334444445554333
No 443
>PRK06756 flavodoxin; Provisional
Probab=38.31 E-value=57 Score=22.49 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=27.1
Q ss_pred hcccCcEEEEEEeCCChhhHH-HHHHHHHHHHhhhCCCCCcEEEEEe
Q psy2792 13 MICWADGCIIVYSLIDKESFD-YAVSTLQNLQRHRAVNNVPVMLLAN 58 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~~piilv~N 58 (173)
.+.++|++|++...-....+. .+..|+..+.... ..+.++.++|+
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~-l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSID-LTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCC-CCCCEEEEEeC
Confidence 456788888887554322222 3556666654332 35678888887
No 444
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=38.26 E-value=55 Score=25.71 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=31.9
Q ss_pred hcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 13 MICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 13 y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
-+.+||.+|+...... ++.+........++.+++ ++.-+|++.|=+|+
T Consensus 63 ~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~--p~~~iIv~sNP~di 120 (300)
T cd01339 63 DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA--PNAIVIVVTNPLDV 120 (300)
T ss_pred HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC--CCeEEEEecCcHHH
Confidence 3789999999875432 223444456667777765 55566788887775
No 445
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.08 E-value=93 Score=20.82 Aligned_cols=42 Identities=7% Similarity=-0.100 Sum_probs=27.5
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL 60 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 60 (173)
++|++.+++ .+....+.+..+++.+++.. ..++++++-|+..
T Consensus 50 ~~d~V~iS~--~~~~~~~~~~~~~~~L~~~~-~~~i~i~~GG~~~ 91 (122)
T cd02071 50 DVDVIGLSS--LSGGHMTLFPEVIELLRELG-AGDILVVGGGIIP 91 (122)
T ss_pred CCCEEEEcc--cchhhHHHHHHHHHHHHhcC-CCCCEEEEECCCC
Confidence 566666655 45566777888888888764 2466666666643
No 446
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=37.91 E-value=67 Score=25.52 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=31.6
Q ss_pred hcccCcEEEEEEeCCCh-----hhH-----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 13 MICWADGCIIVYSLIDK-----ESF-----DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~-----~s~-----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
-+.+||++|++...... ..+ ..+......+.+.. ++..+|++.|=+|.
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~--~~~~viv~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA--PDTKILVVTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCeEEEEeCCchHH
Confidence 48899999999986332 112 22344555556554 56678888888885
No 447
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=36.87 E-value=1.8e+02 Score=21.83 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=47.8
Q ss_pred cccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 14 ICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
=.+||.+-+|+++..- ..++.+...+..+.+.+ .++|+.++.-..-|.++ + ...+-+.+.+.|..|+.+|
T Consensus 81 ~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~--~g~~lKvIlE~~~L~~~-e--i~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 81 KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEAC--AGVLLKVIIETGLLTDE-E--IRKACEICIDAGADFVKTS 152 (211)
T ss_pred HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHc--CCCeEEEEEecCCCCHH-H--HHHHHHHHHHhCCCEEEeC
Confidence 3479999999988642 24566666777777765 36787777776666431 1 2345556778899999998
No 448
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=36.82 E-value=2e+02 Score=22.32 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=52.8
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC----CCc---cCCHHHHHHHhhhcCCeEEEEcc
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE----HLR---QVDESLGRSTAVKYNCTFHEVSV 89 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~----~~~---~v~~~~~~~~~~~~~~~~~e~Sa 89 (173)
...+|++=|..+..+-..+...+..+.. .++++..|+---... ... ....+....+|..-|-.+|..
T Consensus 165 rk~iIllTDG~~~~~~~~~~~~~~~~~~----~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-- 238 (296)
T TIGR03436 165 RKALIVISDGGDNRSRDTLERAIDAAQR----ADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-- 238 (296)
T ss_pred CeEEEEEecCCCcchHHHHHHHHHHHHH----cCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc--
Confidence 3457777777665444444445544443 468888777642211 000 023566788888877766655
Q ss_pred cCCcccHHHHHHHHHHHHhcC
Q psy2792 90 ADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 90 k~g~~~v~~lf~~l~~~i~~~ 110 (173)
+.. ++.+.|..+.+.+...
T Consensus 239 -~~~-~l~~~f~~i~~~~~~~ 257 (296)
T TIGR03436 239 -NSN-DLDGAFAQIAEELRSQ 257 (296)
T ss_pred -cCc-cHHHHHHHHHHHHhhe
Confidence 455 7999999999988664
No 449
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=36.74 E-value=45 Score=20.36 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=13.2
Q ss_pred EEEEEEeCCChhhHHHHHHH
Q psy2792 19 GCIIVYSLIDKESFDYAVST 38 (173)
Q Consensus 19 ~iilv~d~~~~~s~~~~~~~ 38 (173)
.++++||+.+......+...
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~ 22 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKI 22 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHH
T ss_pred EEEEEEECCCcHHHHHHHHH
Confidence 47889999776555444443
No 450
>PRK13660 hypothetical protein; Provisional
Probab=36.67 E-value=77 Score=23.29 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=9.5
Q ss_pred cccCcEEEEEEeCCC
Q psy2792 14 ICWADGCIIVYSLID 28 (173)
Q Consensus 14 ~~~ad~iilv~d~~~ 28 (173)
+.++|++|++||...
T Consensus 127 v~~sd~~i~~YD~e~ 141 (182)
T PRK13660 127 LEHTDGALLVYDEEN 141 (182)
T ss_pred HHccCeEEEEEcCCC
Confidence 456677777776544
No 451
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=36.31 E-value=53 Score=26.36 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHhhhCC-----------CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHH
Q psy2792 29 KESFDYAVSTLQNLQRHRAV-----------NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIY 97 (173)
Q Consensus 29 ~~s~~~~~~~~~~i~~~~~~-----------~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~ 97 (173)
...|+++..|+......... ..+|..+|..-+...+....-......+-+..+..++..++++-. ++.
T Consensus 55 ~~~f~~l~~Fi~~~~~~~~~~~~~~~~~~~~~~IPtA~lltGvN~~dh~~~F~~L~~~L~~~~~~~vv~L~S~dc~-~lk 133 (330)
T PF07034_consen 55 SKLFDDLVDFIRNSHSSDESSARDWASQMNSREIPTALLLTGVNIPDHDLLFEQLSERLQSSVGPYVVRLNSKDCS-NLK 133 (330)
T ss_pred HHHHHHHHHHHHhhcCccccccccccccccccccchHHHHhCCCCccHHHHHHHHHHHHHhCCCcEEEEEecccch-HHH
Confidence 34566666666554432211 357776665555544322211122222323335567788999998 999
Q ss_pred HHHHHHHHHHhcCCCC
Q psy2792 98 QAFDHLLTESRGGPPS 113 (173)
Q Consensus 98 ~lf~~l~~~i~~~~~~ 113 (173)
.++..|+..+......
T Consensus 134 ~~lk~iv~ql~~~~~~ 149 (330)
T PF07034_consen 134 SALKSIVRQLMSDKSD 149 (330)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999865443
No 452
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=35.29 E-value=77 Score=21.47 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=27.6
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
.+.|++++|.-+... -..++..++++..+++++.+-.-
T Consensus 11 A~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 11 AKRPVILAGRGARRS----GAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp -SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEGGG
T ss_pred CCCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecCcc
Confidence 458999999877632 23678899999999998876443
No 453
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.18 E-value=1.5e+02 Score=20.48 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=23.5
Q ss_pred ccCcEEEEEEeCCCh------hh-HHHHHHHHHHHHhhhCCCCCcEEEEE
Q psy2792 15 CWADGCIIVYSLIDK------ES-FDYAVSTLQNLQRHRAVNNVPVMLLA 57 (173)
Q Consensus 15 ~~ad~iilv~d~~~~------~s-~~~~~~~~~~i~~~~~~~~~piilv~ 57 (173)
...|.+++.+-.+|. +. .+.+...+..++... ++++++++.
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~--~~~~vi~~~ 94 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHF--PNIKIVVQS 94 (169)
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCeEEEEe
Confidence 467888888877663 22 233444555555432 556666654
No 454
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=35.13 E-value=34 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=22.8
Q ss_pred CeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 82 CTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 82 ~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+++|..||.++. ||..|++.|+..++
T Consensus 240 ~Pv~~gsa~~~~-Gv~~Lld~i~~~~P 265 (267)
T cd04169 240 TPVFFGSALNNF-GVQELLDALVDLAP 265 (267)
T ss_pred EEEEecccccCc-CHHHHHHHHHHHCC
Confidence 568889999999 99999999988764
No 455
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=34.49 E-value=36 Score=26.48 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=22.7
Q ss_pred CeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 82 CTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 82 ~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+++|..||.++. ||..|++.+...+.
T Consensus 243 ~PV~~gSa~~~~-Gi~~lld~i~~~~p 268 (270)
T cd01886 243 VPVLCGSAFKNK-GVQPLLDAVVDYLP 268 (270)
T ss_pred EEEEeCcCCCCc-CHHHHHHHHHHhcC
Confidence 568889999999 99999999987654
No 456
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=33.94 E-value=49 Score=22.51 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=22.4
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.+-.+|+.=|++..+....+..| -+ ..++|++.+++|.+|
T Consensus 46 kakLVilA~D~s~~~i~~~~~~l----c~---~~~Vp~~~~~tk~eL 85 (122)
T PRK04175 46 IAKLVVIAEDVDPEEIVAHLPLL----CE---EKKIPYVYVPSKKDL 85 (122)
T ss_pred CccEEEEeCCCChHHHHHHHHHH----HH---HcCCCEEEECCHHHH
Confidence 35556666666543222332222 22 257999999988765
No 457
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.79 E-value=87 Score=25.27 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=30.6
Q ss_pred cCcE--EEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEE
Q psy2792 16 WADG--CIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLL 56 (173)
Q Consensus 16 ~ad~--iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv 56 (173)
++|+ +++-||+++++..+..+ .|++++-..+...++|++|=
T Consensus 118 GadavK~Llyy~pD~~~~in~~k~a~vervg~eC~a~dipf~lE 161 (324)
T PRK12399 118 GADAVKFLLYYDVDEPDEINEQKKAYIERIGSECVAEDIPFFLE 161 (324)
T ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 5665 78889999877666654 48888887776678998873
No 458
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=33.70 E-value=2.6e+02 Score=22.62 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=47.1
Q ss_pred CcEEEEEEeCCChhhHH---HHHHHHHHHHhhhCCCCC-cEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE-----
Q psy2792 17 ADGCIIVYSLIDKESFD---YAVSTLQNLQRHRAVNNV-PVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV----- 87 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~---~~~~~~~~i~~~~~~~~~-piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~----- 87 (173)
+|.+|+|- ..+..++. .+..++..+.... .+. .+-+|.||.|... .+..+++..+++++-.
T Consensus 173 ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg--~~~~i~GlViNr~d~~~-------~ie~~ae~lgi~vLg~IP~D~ 242 (329)
T cd02033 173 AQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLG--GNVGVAGMVINKDDGTG-------EAQAFAAHAGIPILAAIPADE 242 (329)
T ss_pred CceEEEeC-CchHHHHHHHHHHHHHHHHHHHhC--CCCCceEEEEeCcCCcc-------hHHHHHHHhCCCEEEECCCCH
Confidence 55555554 33445553 3455556665532 122 3678999999632 2455555555443211
Q ss_pred -----------cccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 88 -----------SVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 88 -----------Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
-...+. .+.+.|..|++.+.+....
T Consensus 243 ~V~~a~~~g~~~~~p~s-~~a~~f~~LA~~I~~~~~~ 278 (329)
T cd02033 243 ELRRKSAAYQIVGRPGT-TWGPLFEQLATNVAEAPPM 278 (329)
T ss_pred HHHHHHHcCCeecCCCC-HHHHHHHHHHHHHHHhcCC
Confidence 011233 5678899999988774443
No 459
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=33.33 E-value=36 Score=21.65 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.3
Q ss_pred CCCCccHhhhcccCcEEEEEEeCC
Q psy2792 4 GLTEGTLTAMICWADGCIIVYSLI 27 (173)
Q Consensus 4 G~e~~~~~~y~~~ad~iilv~d~~ 27 (173)
|.+..++..-+..||+||++-|..
T Consensus 26 g~~~~lt~~~i~~Ad~VIia~d~~ 49 (88)
T PRK10474 26 GLENELTAEDVASADMVILTKDIG 49 (88)
T ss_pred CcCCCCCHHHHHhCCEEEEEecCC
Confidence 344457888899999999999985
No 460
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=32.88 E-value=91 Score=20.46 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=27.3
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
.++......++|+|=.+.-. . ..+++.+....+..++++|++|+-
T Consensus 81 ~~l~~~~~~~lviDe~~~l~-~--~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF-S--DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH-T--HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC-C--HHHHHHHHHHHhCCCCeEEEEECh
Confidence 34555566888888655421 1 334444544443477889999886
No 461
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=32.77 E-value=74 Score=25.74 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=34.8
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~ 80 (173)
.++.+||+|| |+| .|.-..+++..+.++ +..++|+||.-= ++..++..+.+.+
T Consensus 131 ~Ll~eADIVV-----TNP-PFSLFrEyv~~Li~~----~KkFlIIGN~Na------iTYkeiFplik~n 183 (336)
T PF13651_consen 131 ELLKEADIVV-----TNP-PFSLFREYVAQLIEY----DKKFLIIGNINA------ITYKEIFPLIKEN 183 (336)
T ss_pred HHHhcCCEEE-----eCC-CcHHHHHHHHHHHHh----CCCEEEEecccc------ccHHHHHHHHhcC
Confidence 3567899876 565 365566677777765 478999999754 3455555555443
No 462
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.37 E-value=95 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=30.3
Q ss_pred cCcE--EEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEE
Q psy2792 16 WADG--CIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLL 56 (173)
Q Consensus 16 ~ad~--iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv 56 (173)
++|+ +++-||+++.+..+..+ .|++++-..+...++|++|=
T Consensus 120 GadavK~Llyy~pD~~~ein~~k~a~vervg~eC~a~dipf~lE 163 (329)
T PRK04161 120 GADAVKFLLYYDVDGDEEINDQKQAYIERIGSECTAEDIPFFLE 163 (329)
T ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 5665 78889999766665554 48888887776678998873
No 463
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=32.37 E-value=2.3e+02 Score=21.67 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=26.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKL 60 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~ 60 (173)
-||.+|++.+. ++.++..+...++.+.+.....+++++ +|.|+.
T Consensus 143 aad~viIp~~p-~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 143 KAQEVYIVASG-EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred cCceEEEeccc-cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 58888888876 455676666655544332222456554 788875
No 464
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=32.05 E-value=50 Score=25.78 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=44.4
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcc
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSP 94 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~ 94 (173)
..+..||+.-|++. ..+..|+..+-+. .++|++++.+|.+|-. ..-. ....++-+.-...+
T Consensus 147 kKAkLVIIA~DVsP----~t~kk~LP~LC~k---~~VPY~iv~sK~eLG~----------AIGk-ktraVVAItdV~~E- 207 (266)
T PTZ00365 147 KKAKLVVIAHDVDP----IELVCFLPALCRK---KEVPYCIIKGKSRLGK----------LVHQ-KTAAVVAIDNVRKE- 207 (266)
T ss_pred CCccEEEEeCCCCH----HHHHHHHHHHHhc---cCCCEEEECCHHHHHH----------HhCC-CCceEEEecccCHH-
Confidence 35788888888764 2335565444443 4799999999988631 1111 11233433333322
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q psy2792 95 AIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 95 ~v~~lf~~l~~~i~~~~~~ 113 (173)
=..-|..|++.+...-..
T Consensus 208 -Dk~~l~~lv~~~~~~~nd 225 (266)
T PTZ00365 208 -DQAEFDNLCKNFRAMFND 225 (266)
T ss_pred -HHHHHHHHHHHHHHhccc
Confidence 245677777777654433
No 465
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=31.91 E-value=98 Score=25.00 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=30.4
Q ss_pred cCcE--EEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEE
Q psy2792 16 WADG--CIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLL 56 (173)
Q Consensus 16 ~ad~--iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv 56 (173)
++|+ +++-||+++.+..+.. ..|++++-..+...++|++|=
T Consensus 119 GadavK~Llyy~pD~~~ein~~k~a~vervg~ec~a~dipf~lE 162 (325)
T TIGR01232 119 GANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLE 162 (325)
T ss_pred CCCeEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 5665 7888999876655555 458888888876678998874
No 466
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=31.87 E-value=44 Score=19.06 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=12.4
Q ss_pred hcccCcEEEEEEeCCC
Q psy2792 13 MICWADGCIIVYSLID 28 (173)
Q Consensus 13 y~~~ad~iilv~d~~~ 28 (173)
.+-+++++++||+.++
T Consensus 29 ~LC~~~v~~iv~~~~g 44 (51)
T PF00319_consen 29 TLCGVDVALIVFSPDG 44 (51)
T ss_dssp HHHT-EEEEEEEETTS
T ss_pred eecCCeEEEEEECCCC
Confidence 4669999999999765
No 467
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.70 E-value=1.7e+02 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=24.4
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
..|.+++++-.+|....+++...++.+. ++.++++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-----~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-----PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-----CCCEEEEEECC
Confidence 4688888888877655555555444431 34667777765
No 468
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=31.62 E-value=2.1e+02 Score=21.01 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=36.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 18 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
+.=++++++....+...+..+++.+++....+++++++-|.=. +. .+++..|...+-..|.
T Consensus 135 ~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--------~~----~~~~~~gad~~~~da~ 195 (197)
T TIGR02370 135 KPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPV--------TQ----DWADKIGADVYGENAS 195 (197)
T ss_pred CCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhc--------CH----HHHHHhCCcEEeCChh
Confidence 3334455555556677788888888886423456666555433 22 3566677776655443
No 469
>PRK13555 azoreductase; Provisional
Probab=31.04 E-value=99 Score=23.05 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=24.8
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH 45 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~ 45 (173)
.-+..||++|+++-+-+-.-=..++.|++.+...
T Consensus 85 ~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13555 85 NQFLEADKVVFAFPLWNFTVPAPLITYISYLSQA 118 (208)
T ss_pred HHHHHcCEEEEEcCcccccchHHHHHHHHHHhcC
Confidence 4578999999999887643234457798887763
No 470
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=30.98 E-value=62 Score=22.40 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=30.6
Q ss_pred hhcccCcEEEEEEeCCChh--h--------HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDKE--S--------FDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~--s--------~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+++||++|+.-.....+ + ..-+..+...+.++. ++..+++|.|=+|+
T Consensus 65 ~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~--p~~~vivvtNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA--PDAIVIVVTNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS--TTSEEEE-SSSHHH
T ss_pred cccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC--CccEEEEeCCcHHH
Confidence 4578899999887653311 1 122345666677766 66778888887774
No 471
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=30.93 E-value=57 Score=23.28 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=22.1
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
-+..||++|++.-.-+..--..++.|++.+.... ..+.|+.++++-
T Consensus 62 ~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~-l~~K~v~~~~~g 107 (171)
T TIGR03567 62 QVAQADGVVVATPVYKASYSGVLKALLDLLPQRA-LRGKVVLPIATG 107 (171)
T ss_pred HHHHCCEEEEECCcccCCCCHHHHHHHHhCChhh-hCCCEEEEEEcC
Confidence 3567788777765544221122344444432111 234566666554
No 472
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=30.90 E-value=64 Score=26.62 Aligned_cols=90 Identities=21% Similarity=0.148 Sum_probs=44.3
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHH-HHhhhCCCCCcEEEEEeCCCCC-------CCccCCHHH----HHHHhh-
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQN-LQRHRAVNNVPVMLLANKLDLE-------HLRQVDESL----GRSTAV- 78 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~-i~~~~~~~~~piilv~NK~Dl~-------~~~~v~~~~----~~~~~~- 78 (173)
.-+..-|.+|++.+. .|.....|+.. +.+ .+.|+.+|-+|+|.. ..+....++ +++.+.
T Consensus 110 ~~~~~yD~fiii~s~----rf~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 110 VKFYRYDFFIIISSE----RFTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp TTGGG-SEEEEEESS----S--HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred ccccccCEEEEEeCC----CCchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 336678999988763 36555555543 444 358999999999951 112222222 222222
Q ss_pred ---hcCC---eEEEEcccCCcc-cHHHHHHHHHHHHhc
Q psy2792 79 ---KYNC---TFHEVSVADNSP-AIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ---~~~~---~~~e~Sak~g~~-~v~~lf~~l~~~i~~ 109 (173)
+.|+ .+|-+|..+-.. +...|.+.|...+..
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 2342 488899885430 455666666666554
No 473
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=30.88 E-value=1.8e+02 Score=21.63 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=37.3
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCcEEEEEeCCCCCCC-ccCCHHHHHHHhhhc
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA----VNNVPVMLLANKLDLEHL-RQVDESLGRSTAVKY 80 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~~~ 80 (173)
-+.|++|++=|+.|.........|.+.+.+... ..++|++.|.---|+-.. .....+....+.+.+
T Consensus 41 l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 41 VQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred cCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 368999999999997554434445554444321 345676555333566432 233444455555443
No 474
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=30.67 E-value=84 Score=21.03 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=25.4
Q ss_pred hcccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEe
Q psy2792 13 MICWADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLAN 58 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~N 58 (173)
.+.++|.+|++..+...... ..+..|++.+.... ..+.+++++++
T Consensus 42 ~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~-~~gk~~~vfgt 88 (140)
T TIGR01753 42 DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDID-LGGKKVALFGS 88 (140)
T ss_pred HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCC-CCCCEEEEEec
Confidence 45668888888766432212 34455665554432 24566777765
No 475
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=30.31 E-value=55 Score=25.85 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=32.1
Q ss_pred hhcccCcEEEEEEeCCChh---hH-------HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDKE---SF-------DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~---s~-------~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+.+||++|++....... .. .-+......+.+++ ++.-++++.|=+|+
T Consensus 62 ~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~--p~~~viv~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG--PDAIILVVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEccChHHH
Confidence 3578999999998763311 11 12344455566655 67778899998886
No 476
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=30.22 E-value=66 Score=23.63 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=26.9
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
..-+..||++|++.-+-+..--..++.|++.+.... -.+.|++++++-
T Consensus 61 ~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~~~-l~~K~v~iiat~ 108 (191)
T PRK10569 61 TEQLAQADGLIVATPVYKASFSGALKTLLDLLPERA-LEHKVVLPLATG 108 (191)
T ss_pred HHHHHHCCEEEEECCccCCCCCHHHHHHHHhCChhh-hCCCEEEEEEec
Confidence 345788999999876654211112233444332211 245688888885
No 477
>PRK05569 flavodoxin; Provisional
Probab=30.01 E-value=84 Score=21.31 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=37.7
Q ss_pred hcccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 13 MICWADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
-+.++|+++++.-+-....+ ..+..+++.+.... ..+.+++++++= .-.... .......+....|+.++
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~-~~~K~v~~f~t~-g~~~~~--~~~~~~~~l~~~g~~~~ 115 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTP-NENKKCILFGSY-GWDNGE--FMKLWKDRMKDYGFNVI 115 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccC-cCCCEEEEEeCC-CCCCCc--HHHHHHHHHHHCCCeEe
Confidence 46688999998765432211 34556666664332 256788888874 211111 12334455566676543
No 478
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=29.99 E-value=84 Score=17.73 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=24.0
Q ss_pred HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
...+++..++=.-++|+++.+ . ..+++.+..+...+|.|+++++
T Consensus 15 ~~~~L~~~~i~y~~~dv~~~~---~---~~~~l~~~~g~~~~P~v~i~g~ 58 (60)
T PF00462_consen 15 AKEFLDEKGIPYEEVDVDEDE---E---AREELKELSGVRTVPQVFIDGK 58 (60)
T ss_dssp HHHHHHHTTBEEEEEEGGGSH---H---HHHHHHHHHSSSSSSEEEETTE
T ss_pred HHHHHHHcCCeeeEcccccch---h---HHHHHHHHcCCCccCEEEECCE
Confidence 345566666666677776542 1 2222333223467888887653
No 479
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=29.69 E-value=1.6e+02 Score=23.13 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=32.2
Q ss_pred cCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhhhcCCeEEEE
Q psy2792 16 WADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~~e~ 87 (173)
..|++||+.+.+... +..+ -..+..+ . ..+++|-|..|+|.....++. ...+..-...+++.+|..
T Consensus 113 RVH~cLYfI~pt~~~-L~~~Di~~mk~L---s--~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 113 RVHACLYFIPPTGHG-LKPLDIEFMKRL---S--KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp -EEEEEEEE-TTSSS-S-HHHHHHHHHH---T--TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred CcceEEEEEcCCCcc-chHHHHHHHHHh---c--ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 468999999987632 1111 1233333 2 568899999999975322211 112223345567765543
No 480
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=29.60 E-value=58 Score=25.34 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=44.9
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcc
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSP 94 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~ 94 (173)
..+..||+.-|++.. ++..|+..+-+. .++|+++|.+|.+|- ...-.. ...++-+.- .|.
T Consensus 147 kKAkLVIIA~DVsPi----e~vk~LpaLCrk---~~VPY~iVktKaeLG----------~AIGkK-travVAItD-~g~- 206 (263)
T PTZ00222 147 KQARMVVIANNVDPV----ELVLWMPNLCRA---NKIPYAIVKDMARLG----------DAIGRK-TATCVAITD-VNA- 206 (263)
T ss_pred CCceEEEEeCCCCHH----HHHHHHHHHHHh---cCCCEEEECCHHHHH----------HHHCCC-CCeEEEEee-CCc-
Confidence 457778888787543 234455555543 479999999998862 111111 123333322 222
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q psy2792 95 AIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 95 ~v~~lf~~l~~~i~~~~~~ 113 (173)
.-...|..|++.+..+-..
T Consensus 207 ed~~~l~~lv~~~~~~~nd 225 (263)
T PTZ00222 207 EDEAALKNLIRSVNARFLS 225 (263)
T ss_pred ccHHHHHHHHHHHHHhhcc
Confidence 3356778888777664433
No 481
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.50 E-value=98 Score=22.68 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=23.2
Q ss_pred hhcccCcEEEEEEeC--C-ChhhHH-HHHHHHHHHHhhhCCCCCcEEEEE
Q psy2792 12 AMICWADGCIIVYSL--I-DKESFD-YAVSTLQNLQRHRAVNNVPVMLLA 57 (173)
Q Consensus 12 ~y~~~ad~iilv~d~--~-~~~s~~-~~~~~~~~i~~~~~~~~~piilv~ 57 (173)
.++.+.|+-+++.|+ + +++.|. .+..++..++... +++||++|-
T Consensus 53 ~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~ 100 (178)
T PF14606_consen 53 DLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVS 100 (178)
T ss_dssp HHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE
T ss_pred HHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 455555555555554 2 233443 4455777777654 789998875
No 482
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=29.37 E-value=2.8e+02 Score=21.79 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=47.9
Q ss_pred cccCcEEEEEEeCCChhhHH---HHHHHHHHHHhhhCCCCC-cEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE--
Q psy2792 14 ICWADGCIIVYSLIDKESFD---YAVSTLQNLQRHRAVNNV-PVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV-- 87 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~---~~~~~~~~i~~~~~~~~~-piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~-- 87 (173)
..-||.+|++.+.+ ..++. .+..++..+.+.. .++ ++-+|.|+.+.. ...+++++.++++++..
T Consensus 145 ~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~--~~v~i~GVV~N~~~~~-------~~~~~~~~~~~i~vLg~IP 214 (296)
T TIGR02016 145 RSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLG--GRVGLLGLVVNRDDGS-------GEAQAFAREVGIPVLAAIP 214 (296)
T ss_pred hhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcC--CCCcceEEEEeCCCCc-------cHHHHHHHHcCCCeEEECC
Confidence 44688888887653 33443 3444444444421 223 466889999742 13345566555443221
Q ss_pred -----c---------ccCCcccHHHHHHHHHHHHhcCC
Q psy2792 88 -----S---------VADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 88 -----S---------ak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
. .........+.|..|++.+.+..
T Consensus 215 ~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~ 252 (296)
T TIGR02016 215 ADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAP 252 (296)
T ss_pred CCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhc
Confidence 0 01112036788888988887643
No 483
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.25 E-value=1.2e+02 Score=19.84 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=8.4
Q ss_pred HHHHHHhhhCCCCCcEEE
Q psy2792 38 TLQNLQRHRAVNNVPVML 55 (173)
Q Consensus 38 ~~~~i~~~~~~~~~piil 55 (173)
.++++.+.....++|+.+
T Consensus 60 ~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 60 YYDELKKDTDRLGIKLVT 77 (99)
T ss_pred HHHHHHHHhhhcCCCEEE
Confidence 344444444334566654
No 484
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=29.21 E-value=2.7e+02 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=24.1
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
.+.|.++||.|.+-...- ......+.+.. .+--+|.||.|-.
T Consensus 211 ~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~----~~~g~IlTKlD~~ 252 (429)
T TIGR01425 211 IQPDNIIFVMDGSIGQAA---EAQAKAFKDSV----DVGSVIITKLDGH 252 (429)
T ss_pred cCCcEEEEEeccccChhH---HHHHHHHHhcc----CCcEEEEECccCC
Confidence 357889999998643211 11222232211 3566889999964
No 485
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=29.09 E-value=53 Score=25.23 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=31.7
Q ss_pred hhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+.+||.||+....... ....-+......+.+++ ++.-++++.|=+|+
T Consensus 66 ~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~--p~a~~i~~tNP~d~ 124 (263)
T cd00650 66 EAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS--PDAWIIVVSNPVDI 124 (263)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC--CCeEEEEecCcHHH
Confidence 447899999997755321 12223345566666665 66778888888875
No 486
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=28.96 E-value=51 Score=22.56 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=13.4
Q ss_pred CCCccHhhhcccCcEEEEEEeC
Q psy2792 5 LTEGTLTAMICWADGCIIVYSL 26 (173)
Q Consensus 5 ~e~~~~~~y~~~ad~iilv~d~ 26 (173)
.+..++..-+..||+||+.-|.
T Consensus 45 ~eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 45 IENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred ccCcCCHHHHHhCCEEEEEecc
Confidence 3334666666667766666664
No 487
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.70 E-value=1.5e+02 Score=23.37 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=28.5
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 19 GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 19 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
-+++.||++.++-=++-..+++++-..+...++|++|=.--.|
T Consensus 129 K~Lvy~~~D~~e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 129 KFLVYYRSDEDEINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred EEEEEEcCCchHHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 3677889887732223245778888777678899887554444
No 488
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=28.51 E-value=1.6e+02 Score=20.23 Aligned_cols=47 Identities=11% Similarity=-0.045 Sum_probs=29.2
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
-+...|.||+...+-...-...+..|+....... .+.+++++.+-..
T Consensus 40 ~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l--~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYAGRIPGEMREFIKKNKDNL--KNKKVALFSVGGS 86 (143)
T ss_pred ccccCCEEEEEEEEECCcCCHHHHHHHHHHHHHH--cCCcEEEEEEeCC
Confidence 5678899998877755433344566777665443 4566666555433
No 489
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.40 E-value=1.2e+02 Score=25.66 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=30.9
Q ss_pred hhcccCcEEEEEEeCCChh---hHHH-------HHHHHHHHHhhhCCCCCcEEEEE-eCCCC
Q psy2792 12 AMICWADGCIIVYSLIDKE---SFDY-------AVSTLQNLQRHRAVNNVPVMLLA-NKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~---s~~~-------~~~~~~~i~~~~~~~~~piilv~-NK~Dl 62 (173)
.-+.+||++|++-...... ..+. +..+...+.++. .++..++||+ |=+|.
T Consensus 195 ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a-~~~~~VlVv~tNPvD~ 255 (452)
T cd05295 195 VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNA-KEDVKVIVAGRTFLNL 255 (452)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCcHHH
Confidence 4478999999999875421 2221 233444455544 3456788888 88885
No 490
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.00 E-value=2e+02 Score=19.56 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=25.2
Q ss_pred ccCcEEEEEEeCCCh-------hhHHHHHHHHHHHHhhhCCCCCcEEEEE
Q psy2792 15 CWADGCIIVYSLIDK-------ESFDYAVSTLQNLQRHRAVNNVPVMLLA 57 (173)
Q Consensus 15 ~~ad~iilv~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~piilv~ 57 (173)
.+.|.+++.+-.+|. ...+++..+++.++... +++++++++
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~--p~~~ii~~~ 86 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAAN--PDVKIIVAT 86 (157)
T ss_pred CCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhC--CCeEEEEEe
Confidence 467888888876663 22345556666666553 556666553
No 491
>KOG0464|consensus
Probab=27.58 E-value=15 Score=30.91 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=38.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|.-++ -.+.+++--|+++.|||.+---.-+.+..|... +..++|-+...||.|..
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDKL 167 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhhh
Confidence 6777765 345678889999999998753222333456422 23578999999999963
No 492
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=27.50 E-value=1.6e+02 Score=18.24 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=27.9
Q ss_pred EEEEEeCCCCCCCccC---CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 53 VMLLANKLDLEHLRQV---DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 53 iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
-++|+|+.|-+-.-+| +.+.+++ -+++|+.++.++-.+ +.-.+|...-..
T Consensus 22 NvIV~Npt~EpIKidvPv~d~~WIE~-Hr~LGL~vvPv~~~d---dfv~~fk~~~~k 74 (78)
T PF10622_consen 22 NVIVGNPTDEPIKIDVPVYDEEWIEE-HRKLGLIVVPVSEDD---DFVGMFKMVKEK 74 (78)
T ss_pred cEEEeCCCCCCEEeeccccCHHHHHH-HHhCCeEEEeccccc---cHHHHHHHHHHH
Confidence 4789999985422222 2333332 345678777776544 445566555443
No 493
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=27.29 E-value=1.9e+02 Score=19.03 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 36 VSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 36 ~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
..++..+.+.. +.+|++++|.+...
T Consensus 57 ~~~l~~l~~~~--~~~Pvlllg~~~~~ 81 (109)
T PF06490_consen 57 AELLKELLKWA--PHIPVLLLGEHDSP 81 (109)
T ss_pred HHHHHHHHhhC--CCCCEEEECCCCcc
Confidence 44555555544 78999999887664
No 494
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=27.16 E-value=3.1e+02 Score=21.56 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=56.8
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCC--------CCccCCHHHHHHHhhhcCCeEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLE--------HLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~--------~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.+++++|++.+.++.++.+....-+-+-..... ..+-=++||..|.|-. -+..+++.....+..+.=.++|
T Consensus 62 t~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i~P~f 141 (271)
T COG1512 62 TGAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEVGYGLEGVLTDAQAGRIIRETIAPAF 141 (271)
T ss_pred cCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEEecCcccccChHHHHHHHHhhhCccc
Confidence 368899999999997776655332222211211 1344588888999932 1234566666666665445555
Q ss_pred EEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 86 EVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.=-. ... +|...++.|+..+..++..
T Consensus 142 r~gn-y~~-gi~~~id~l~~~l~g~~~~ 167 (271)
T COG1512 142 RDGN-YAG-GLEAGIDRLVALLAGEPLP 167 (271)
T ss_pred ccCc-HHH-HHHHHHHHHHHHHcCCCCC
Confidence 4322 223 6788888887776654443
No 495
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=27.13 E-value=1.8e+02 Score=18.70 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=33.0
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
+...-+++|..+|+-+.....-++.++....+.+.+... ++ .-|+.|...|
T Consensus 28 Ll~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~-~~-a~ii~G~~id 78 (95)
T PF12327_consen 28 LLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKAD-PD-ANIIWGASID 78 (95)
T ss_dssp TSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSS-TT-SEEEEEEEE-
T ss_pred cccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhh-cC-ceEEEEEEEC
Confidence 334568899999998877655688888888888888763 33 3445676666
No 496
>PTZ00258 GTP-binding protein; Provisional
Probab=27.13 E-value=1.2e+02 Score=25.14 Aligned_cols=15 Identities=27% Similarity=0.140 Sum_probs=12.7
Q ss_pred hcccCcEEEEEEeCC
Q psy2792 13 MICWADGCIIVYSLI 27 (173)
Q Consensus 13 y~~~ad~iilv~d~~ 27 (173)
.++++|++++|+|..
T Consensus 112 ~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 112 HIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHCCEEEEEEeCC
Confidence 467899999999973
No 497
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=27.00 E-value=1.2e+02 Score=22.90 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=15.2
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
++++++.+|....-+|+.+...+..+.. .++|+ ++.||
T Consensus 125 ~~~vvv~~~~~~~~~~~~~~~~l~~l~~----~g~~~-i~tN~ 162 (242)
T TIGR01459 125 ASLITIYRSENEKLDLDEFDELFAPIVA----RKIPN-ICANP 162 (242)
T ss_pred CcEEEEcCCCcccCCHHHHHHHHHHHHh----CCCcE-EEECC
Confidence 3444444443222234444433333322 34554 44554
No 498
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=26.57 E-value=68 Score=25.40 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=32.4
Q ss_pred hhcccCcEEEEEEeCCCh---hh-------HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDK---ES-------FDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~---~s-------~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+++||++|+....... +. ..-+..+...+.++. ++..+++|.|=+|.
T Consensus 60 ~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~--p~~~vivvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG--FDGIFLVATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEeCCHHHH
Confidence 358899999998876321 11 122344556666654 67779999998885
No 499
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=26.50 E-value=92 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=32.3
Q ss_pred hcccCcEEEEEEeCCCh------h----hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 13 MICWADGCIIVYSLIDK------E----SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~------~----s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
-+.+||++|+....... + ...-+..+...+.++. ++..+++|.|=+|.
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~--~~~~vivvsNP~d~ 122 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG--FDGIFLVASNPVDV 122 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEecChHHH
Confidence 36899999999887421 1 1122345566666665 57778999998885
No 500
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.48 E-value=2.9e+02 Score=20.88 Aligned_cols=44 Identities=18% Similarity=0.030 Sum_probs=25.3
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKL 60 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~ 60 (173)
-||.+|++...+ +.++..+...+..+.......+.++. +|.|+.
T Consensus 141 aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 141 KAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred cccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 589999988764 44666555555554443322345554 445653
Done!