Query psy2792
Match_columns 173
No_of_seqs 297 out of 1385
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 17:03:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.3E-28 1.8E-32 181.1 13.1 107 2-110 69-177 (216)
2 3cbq_A GTP-binding protein REM 99.9 2.9E-22 9.9E-27 147.1 14.4 107 2-109 79-188 (195)
3 3t5g_A GTP-binding protein RHE 99.9 2.5E-22 8.6E-27 144.8 13.8 109 2-111 61-171 (181)
4 2g3y_A GTP-binding protein GEM 99.9 1.4E-22 4.9E-27 151.0 11.6 107 2-109 94-203 (211)
5 3q72_A GTP-binding protein RAD 99.9 4E-22 1.4E-26 141.6 13.0 107 2-109 56-164 (166)
6 3q85_A GTP-binding protein REM 99.9 3.8E-22 1.3E-26 142.1 12.8 107 2-109 58-167 (169)
7 3kkq_A RAS-related protein M-R 99.9 5.7E-22 1.9E-26 143.1 13.4 107 2-109 73-182 (183)
8 3oes_A GTPase rhebl1; small GT 99.9 4.1E-22 1.4E-26 146.5 11.7 111 2-113 79-191 (201)
9 2fu5_C RAS-related protein RAB 99.9 6.1E-22 2.1E-26 143.0 12.0 106 2-109 64-171 (183)
10 3q3j_B RHO-related GTP-binding 99.9 4.8E-22 1.6E-26 147.9 11.5 107 2-111 82-205 (214)
11 2hup_A RAS-related protein RAB 99.9 8.3E-22 2.8E-26 145.1 12.6 106 2-109 85-193 (201)
12 2nzj_A GTP-binding protein REM 99.9 1.6E-21 5.4E-26 139.5 13.0 107 2-109 59-169 (175)
13 3ihw_A Centg3; RAS, centaurin, 99.9 1.1E-21 3.6E-26 142.8 12.3 104 2-109 74-180 (184)
14 2cjw_A GTP-binding protein GEM 99.9 2.1E-21 7.2E-26 142.2 13.7 107 2-109 63-172 (192)
15 1u8z_A RAS-related protein RAL 99.9 2E-21 7E-26 137.6 12.7 107 2-109 59-167 (168)
16 2hxs_A RAB-26, RAS-related pro 99.9 2.1E-21 7.1E-26 139.3 12.9 109 2-111 63-175 (178)
17 1c1y_A RAS-related protein RAP 99.9 2.5E-21 8.7E-26 137.2 13.1 106 2-108 58-166 (167)
18 2fn4_A P23, RAS-related protei 99.9 2.6E-21 9E-26 138.8 12.9 107 2-109 64-172 (181)
19 3c5c_A RAS-like protein 12; GD 99.9 1.3E-21 4.5E-26 142.5 11.4 107 2-109 76-186 (187)
20 2iwr_A Centaurin gamma 1; ANK 99.9 3.9E-21 1.3E-25 138.1 13.6 104 2-109 61-169 (178)
21 2a5j_A RAS-related protein RAB 99.9 2.3E-21 7.9E-26 141.3 12.5 106 2-109 77-184 (191)
22 1z08_A RAS-related protein RAB 99.9 1.9E-21 6.7E-26 138.4 11.8 106 2-109 62-169 (170)
23 3reg_A RHO-like small GTPase; 99.9 2.2E-21 7.7E-26 141.6 12.3 107 2-111 78-190 (194)
24 2ew1_A RAS-related protein RAB 99.9 1.4E-21 4.7E-26 144.3 11.3 106 2-109 82-189 (201)
25 1z0f_A RAB14, member RAS oncog 99.9 2.8E-21 9.7E-26 138.5 12.5 106 2-109 71-178 (179)
26 1r2q_A RAS-related protein RAB 99.9 2.2E-21 7.5E-26 137.8 11.5 106 2-109 62-169 (170)
27 2g6b_A RAS-related protein RAB 99.9 3.9E-21 1.3E-25 138.1 12.9 106 2-109 67-174 (180)
28 3tkl_A RAS-related protein RAB 99.9 3.9E-21 1.3E-25 140.0 13.0 106 2-109 72-179 (196)
29 2atx_A Small GTP binding prote 99.9 6.2E-21 2.1E-25 139.1 13.9 105 2-109 73-193 (194)
30 2efe_B Small GTP-binding prote 99.9 3.8E-21 1.3E-25 138.3 12.6 106 2-109 68-175 (181)
31 2gf9_A RAS-related protein RAB 99.9 5.2E-21 1.8E-25 139.1 13.4 106 2-109 78-185 (189)
32 2bov_A RAla, RAS-related prote 99.9 5.8E-21 2E-25 140.1 13.8 107 2-109 69-177 (206)
33 3tw8_B RAS-related protein RAB 99.9 4E-21 1.4E-25 137.9 12.2 105 2-109 65-171 (181)
34 2a9k_A RAS-related protein RAL 99.9 5.1E-21 1.8E-25 138.0 12.9 107 2-109 73-181 (187)
35 3dz8_A RAS-related protein RAB 99.9 1.2E-21 4.1E-26 142.8 9.6 106 2-109 79-186 (191)
36 2bcg_Y Protein YP2, GTP-bindin 99.9 7.2E-21 2.5E-25 140.1 13.9 107 2-110 64-172 (206)
37 1kao_A RAP2A; GTP-binding prot 99.9 4.3E-21 1.5E-25 135.7 11.8 107 2-109 58-166 (167)
38 3cpj_B GTP-binding protein YPT 99.9 4.4E-21 1.5E-25 143.3 12.4 109 2-112 69-179 (223)
39 1z0j_A RAB-22, RAS-related pro 99.9 6.2E-21 2.1E-25 135.6 12.5 106 2-109 62-169 (170)
40 2fg5_A RAB-22B, RAS-related pr 99.9 3E-21 1E-25 140.9 10.9 106 2-109 79-186 (192)
41 2bme_A RAB4A, RAS-related prot 99.9 4.9E-21 1.7E-25 138.4 11.6 106 2-109 66-173 (186)
42 1zbd_A Rabphilin-3A; G protein 99.9 7.2E-21 2.5E-25 139.7 12.6 106 2-109 64-171 (203)
43 1x3s_A RAS-related protein RAB 99.9 7.3E-21 2.5E-25 138.3 12.6 109 2-112 71-181 (195)
44 2il1_A RAB12; G-protein, GDP, 99.9 5.4E-21 1.9E-25 139.6 11.5 106 2-109 82-190 (192)
45 3bc1_A RAS-related protein RAB 99.8 9.1E-21 3.1E-25 137.4 12.2 107 2-109 77-185 (195)
46 3t1o_A Gliding protein MGLA; G 99.8 6.9E-21 2.4E-25 138.5 11.5 103 2-109 81-192 (198)
47 1ek0_A Protein (GTP-binding pr 99.8 6.1E-21 2.1E-25 135.5 10.9 105 2-108 59-168 (170)
48 1z2a_A RAS-related protein RAB 99.8 7.1E-21 2.4E-25 135.0 11.2 105 2-109 61-167 (168)
49 1m7b_A RND3/RHOE small GTP-bin 99.8 6.6E-21 2.3E-25 138.1 11.1 105 2-109 62-183 (184)
50 2o52_A RAS-related protein RAB 99.8 5.4E-21 1.8E-25 140.6 10.6 106 2-109 81-188 (200)
51 2p5s_A RAS and EF-hand domain 99.8 8.3E-21 2.8E-25 139.3 11.6 106 2-109 84-197 (199)
52 4djt_A GTP-binding nuclear pro 99.8 1.9E-20 6.6E-25 138.9 13.5 110 2-113 68-179 (218)
53 2q3h_A RAS homolog gene family 99.8 1.4E-20 4.7E-25 138.0 12.5 105 2-109 75-195 (201)
54 2oil_A CATX-8, RAS-related pro 99.8 1.4E-20 4.7E-25 137.2 12.3 106 2-109 81-188 (193)
55 1z06_A RAS-related protein RAB 99.8 7.2E-21 2.5E-25 138.4 10.7 107 2-109 76-188 (189)
56 2j0v_A RAC-like GTP-binding pr 99.8 4.8E-21 1.6E-25 141.7 9.9 107 2-111 64-182 (212)
57 1g16_A RAS-related protein SEC 99.8 1.4E-20 4.7E-25 133.8 11.9 105 2-109 59-165 (170)
58 3bwd_D RAC-like GTP-binding pr 99.8 5.5E-21 1.9E-25 137.6 9.9 105 2-109 63-181 (182)
59 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.1E-20 3.9E-25 136.2 11.4 107 2-111 60-182 (186)
60 2atv_A RERG, RAS-like estrogen 99.8 1.6E-20 5.4E-25 137.4 12.1 108 2-109 83-191 (196)
61 4dsu_A GTPase KRAS, isoform 2B 99.8 3.2E-20 1.1E-24 134.2 13.4 106 2-109 59-166 (189)
62 2yc2_C IFT27, small RAB-relate 99.8 8.2E-21 2.8E-25 139.4 10.2 107 2-109 80-192 (208)
63 2y8e_A RAB-protein 6, GH09086P 99.8 1.1E-20 3.6E-25 135.5 10.3 106 2-109 70-177 (179)
64 1gwn_A RHO-related GTP-binding 99.8 1.4E-20 4.7E-25 139.3 10.8 105 2-109 83-204 (205)
65 2gco_A H9, RHO-related GTP-bin 99.8 3.9E-20 1.3E-24 136.0 13.0 105 2-109 80-200 (201)
66 2j1l_A RHO-related GTP-binding 99.8 1.5E-20 5.1E-25 139.7 10.9 106 2-110 89-210 (214)
67 2ce2_X GTPase HRAS; signaling 99.8 9.1E-20 3.1E-24 128.6 14.4 106 2-109 58-165 (166)
68 2f7s_A C25KG, RAS-related prot 99.8 7.6E-21 2.6E-25 141.1 9.0 107 2-109 91-199 (217)
69 2fv8_A H6, RHO-related GTP-bin 99.8 6.4E-20 2.2E-24 135.4 13.9 106 2-110 80-201 (207)
70 1wms_A RAB-9, RAB9, RAS-relate 99.8 8.2E-20 2.8E-24 130.8 13.9 107 2-110 63-175 (177)
71 1f6b_A SAR1; gtpases, N-termin 99.8 2.4E-20 8.3E-25 137.0 11.2 102 2-106 76-196 (198)
72 1ky3_A GTP-binding protein YPT 99.8 7.7E-20 2.6E-24 131.2 12.5 107 2-109 65-178 (182)
73 1r8s_A ADP-ribosylation factor 99.8 1E-20 3.5E-25 134.0 7.8 105 2-109 51-162 (164)
74 3con_A GTPase NRAS; structural 99.8 8.4E-20 2.9E-24 132.6 12.7 106 2-109 76-183 (190)
75 2erx_A GTP-binding protein DI- 99.8 4.2E-20 1.4E-24 131.3 10.7 106 2-108 58-166 (172)
76 1m2o_B GTP-binding protein SAR 99.8 5.2E-20 1.8E-24 134.4 11.2 102 2-106 74-189 (190)
77 3clv_A RAB5 protein, putative; 99.8 1.6E-19 5.4E-24 131.6 13.6 103 2-109 100-204 (208)
78 3cph_A RAS-related protein SEC 99.8 7.1E-20 2.4E-24 135.1 11.6 105 2-109 76-182 (213)
79 3l0i_B RAS-related protein RAB 99.8 2.2E-21 7.6E-26 142.4 2.7 106 2-109 89-196 (199)
80 1upt_A ARL1, ADP-ribosylation 99.8 3.5E-20 1.2E-24 131.9 8.7 105 2-109 58-169 (171)
81 4bas_A ADP-ribosylation factor 99.8 2.6E-20 8.9E-25 135.9 8.1 107 2-109 70-189 (199)
82 2gf0_A GTP-binding protein DI- 99.8 9.4E-20 3.2E-24 133.0 11.0 106 2-109 63-171 (199)
83 4gzl_A RAS-related C3 botulinu 99.8 3.3E-20 1.1E-24 136.8 8.5 103 2-107 85-203 (204)
84 2b6h_A ADP-ribosylation factor 99.8 2.9E-20 1E-24 135.9 8.0 105 2-109 80-191 (192)
85 3gj0_A GTP-binding nuclear pro 99.8 5.8E-20 2E-24 136.8 9.5 107 2-113 71-179 (221)
86 3llu_A RAS-related GTP-binding 99.8 6.8E-20 2.3E-24 134.2 9.5 102 2-107 76-195 (196)
87 1zj6_A ADP-ribosylation factor 99.8 1.8E-19 6.2E-24 130.7 11.6 108 2-112 67-181 (187)
88 1vg8_A RAS-related protein RAB 99.8 2.2E-19 7.7E-24 131.8 11.9 106 2-109 64-175 (207)
89 1fzq_A ADP-ribosylation factor 99.8 5.8E-20 2E-24 133.0 7.6 105 2-109 67-178 (181)
90 2x77_A ADP-ribosylation factor 99.8 5.8E-20 2E-24 133.4 7.3 105 2-109 73-184 (189)
91 3r7w_B Gtpase2, GTP-binding pr 99.8 3.5E-20 1.2E-24 145.8 6.3 105 2-110 53-175 (331)
92 2h57_A ADP-ribosylation factor 99.8 1.1E-18 3.6E-23 126.9 13.4 105 2-109 74-187 (190)
93 3c5h_A Glucocorticoid receptor 99.8 6.8E-20 2.3E-24 140.0 7.1 104 2-108 125-254 (255)
94 2wkq_A NPH1-1, RAS-related C3 99.8 6E-19 2.1E-23 138.3 10.8 105 2-109 210-330 (332)
95 2h17_A ADP-ribosylation factor 99.8 8E-19 2.7E-23 126.7 10.4 102 2-106 72-180 (181)
96 1ksh_A ARF-like protein 2; sma 99.8 1.4E-18 4.8E-23 125.6 11.7 106 2-110 69-181 (186)
97 1zd9_A ADP-ribosylation factor 99.8 1.4E-19 4.7E-24 131.6 5.7 105 2-109 74-185 (188)
98 1moz_A ARL1, ADP-ribosylation 99.8 3.9E-19 1.3E-23 128.0 6.6 105 2-109 69-180 (183)
99 2zej_A Dardarin, leucine-rich 99.8 2E-19 7E-24 130.4 4.9 105 2-109 63-178 (184)
100 3th5_A RAS-related C3 botulinu 99.6 2.8E-20 9.5E-25 136.9 0.0 103 2-107 85-203 (204)
101 1cip_A Protein (guanine nucleo 99.8 3.8E-19 1.3E-23 141.8 6.1 107 2-109 200-344 (353)
102 3o47_A ADP-ribosylation factor 99.7 1.5E-18 5E-23 137.2 7.0 105 2-109 216-327 (329)
103 2xtz_A Guanine nucleotide-bind 99.7 1.3E-18 4.6E-23 138.6 6.2 107 2-109 190-345 (354)
104 3lvq_E ARF-GAP with SH3 domain 99.7 2.7E-18 9.3E-23 142.3 7.0 105 2-109 373-484 (497)
105 1azs_C GS-alpha; complex (lyas 99.7 4.3E-18 1.5E-22 137.4 7.2 107 2-109 224-385 (402)
106 1zcb_A G alpha I/13; GTP-bindi 99.7 4.4E-18 1.5E-22 136.0 6.1 107 2-109 208-353 (362)
107 2f9l_A RAB11B, member RAS onco 99.7 9.8E-17 3.4E-21 117.5 12.5 106 2-109 61-168 (199)
108 3ohm_A Guanine nucleotide-bind 99.7 6.9E-18 2.3E-22 133.0 5.8 109 2-111 174-320 (327)
109 1u0l_A Probable GTPase ENGC; p 99.7 2E-17 6.7E-22 129.3 7.9 91 8-105 76-169 (301)
110 2wji_A Ferrous iron transport 99.7 2.6E-17 8.8E-22 117.3 7.4 97 2-107 57-163 (165)
111 2qu8_A Putative nucleolar GTP- 99.7 9.4E-17 3.2E-21 120.1 10.2 96 11-109 103-205 (228)
112 1oix_A RAS-related protein RAB 99.7 2.9E-16 9.8E-21 114.6 11.7 104 2-107 85-190 (191)
113 2fh5_B SR-beta, signal recogni 99.7 2.6E-17 9.1E-22 121.6 6.0 104 2-106 61-213 (214)
114 3r7w_A Gtpase1, GTP-binding pr 99.7 6.3E-17 2.2E-21 126.7 8.3 106 2-109 59-181 (307)
115 4fid_A G protein alpha subunit 99.6 6.6E-17 2.3E-21 127.9 4.7 107 2-109 168-328 (340)
116 3iev_A GTP-binding protein ERA 99.6 1.1E-15 3.8E-20 119.7 10.8 111 2-117 66-190 (308)
117 2gj8_A MNME, tRNA modification 99.6 1.3E-16 4.4E-21 114.6 3.9 98 2-109 59-166 (172)
118 3dpu_A RAB family protein; roc 99.6 6.6E-16 2.3E-20 129.2 8.6 105 2-112 105-211 (535)
119 2cxx_A Probable GTP-binding pr 99.6 1.8E-16 6.2E-21 114.5 4.5 97 9-109 71-184 (190)
120 2lkc_A Translation initiation 99.6 8.7E-15 3E-19 104.5 12.5 96 2-109 62-171 (178)
121 2wjg_A FEOB, ferrous iron tran 99.6 8.4E-16 2.9E-20 111.0 6.8 101 2-111 61-171 (188)
122 2yv5_A YJEQ protein; hydrolase 99.6 6.4E-16 2.2E-20 120.8 6.5 96 4-104 65-164 (302)
123 2dyk_A GTP-binding protein; GT 99.6 1.8E-15 6.1E-20 106.3 6.0 95 2-107 56-160 (161)
124 1svi_A GTP-binding protein YSX 99.6 4E-15 1.4E-19 108.0 7.4 94 9-108 95-194 (195)
125 3pqc_A Probable GTP-binding pr 99.5 1.7E-14 5.7E-19 104.4 6.6 93 9-109 94-194 (195)
126 3b1v_A Ferrous iron uptake tra 99.5 2.5E-14 8.4E-19 110.2 6.8 98 2-108 56-163 (272)
127 1lnz_A SPO0B-associated GTP-bi 99.5 1.6E-14 5.6E-19 114.6 5.8 99 9-112 226-333 (342)
128 3a1s_A Iron(II) transport prot 99.5 3.1E-14 1.1E-18 108.8 7.0 99 2-109 59-167 (258)
129 2e87_A Hypothetical protein PH 99.5 1.3E-13 4.6E-18 109.8 10.5 93 12-109 242-336 (357)
130 1nrj_B SR-beta, signal recogni 99.5 9.5E-15 3.3E-19 108.1 3.5 92 2-93 62-169 (218)
131 1wf3_A GTP-binding protein; GT 99.5 9.2E-14 3.1E-18 108.5 7.8 107 2-116 62-180 (301)
132 4dcu_A GTP-binding protein ENG 99.5 1E-13 3.5E-18 113.8 7.7 92 12-109 273-369 (456)
133 3qq5_A Small GTP-binding prote 99.5 4.5E-14 1.6E-18 114.9 5.2 99 2-110 90-197 (423)
134 3iby_A Ferrous iron transport 99.4 3.8E-14 1.3E-18 108.3 3.8 96 2-106 55-164 (256)
135 3gee_A MNME, tRNA modification 99.4 1.7E-13 5.9E-18 113.1 7.3 100 2-108 288-397 (476)
136 3i8s_A Ferrous iron transport 99.4 7E-14 2.4E-18 107.7 4.0 100 2-110 57-170 (274)
137 2hjg_A GTP-binding protein ENG 99.4 1.5E-13 5.1E-18 112.3 6.0 92 12-109 253-349 (436)
138 4dhe_A Probable GTP-binding pr 99.4 5.1E-13 1.8E-17 98.9 8.4 96 9-110 105-212 (223)
139 1xzp_A Probable tRNA modificat 99.4 1.2E-12 4E-17 108.2 11.3 96 2-108 298-404 (482)
140 3l82_B F-box only protein 4; T 99.4 4.3E-13 1.5E-17 98.9 7.6 102 4-109 111-223 (227)
141 3sjy_A Translation initiation 99.4 1.8E-12 6.2E-17 104.9 9.2 104 2-109 82-192 (403)
142 3k53_A Ferrous iron transport 99.4 1.1E-12 3.9E-17 100.6 7.4 101 2-110 57-167 (271)
143 1mky_A Probable GTP-binding pr 99.4 2.1E-12 7.2E-17 105.5 8.8 99 2-110 56-167 (439)
144 3cb4_D GTP-binding protein LEP 99.3 3.1E-12 1.1E-16 108.1 9.8 101 2-110 78-183 (599)
145 2ywe_A GTP-binding protein LEP 99.3 4.7E-12 1.6E-16 107.0 10.3 101 2-110 80-185 (600)
146 1ega_A Protein (GTP-binding pr 99.3 6.5E-12 2.2E-16 98.0 8.3 108 2-116 63-182 (301)
147 3l2o_B F-box only protein 4; s 99.3 1E-11 3.5E-16 95.7 9.1 103 3-109 195-308 (312)
148 3geh_A MNME, tRNA modification 99.3 4.9E-12 1.7E-16 104.0 7.7 97 2-110 279-385 (462)
149 1s0u_A EIF-2-gamma, translatio 99.3 2.3E-11 7.8E-16 98.5 10.0 100 2-109 88-198 (408)
150 3h2y_A GTPase family protein; 99.2 2.1E-11 7.3E-16 97.6 8.9 90 9-107 62-158 (368)
151 2hjg_A GTP-binding protein ENG 99.2 4.8E-12 1.6E-16 103.4 5.2 98 2-110 58-166 (436)
152 1wb1_A Translation elongation 99.2 1.8E-11 6.3E-16 101.2 7.6 98 2-108 80-188 (482)
153 1g7s_A Translation initiation 99.2 9.9E-11 3.4E-15 98.9 12.2 98 2-108 77-217 (594)
154 3tr5_A RF-3, peptide chain rel 99.2 1.2E-10 4E-15 97.3 12.1 58 2-64 89-148 (528)
155 2elf_A Protein translation elo 99.2 2.9E-11 1E-15 96.8 8.0 100 2-109 67-180 (370)
156 1mky_A Probable GTP-binding pr 99.2 8.3E-11 2.8E-15 96.1 10.1 93 11-109 258-355 (439)
157 1jny_A EF-1-alpha, elongation 99.2 8.4E-12 2.9E-16 101.9 3.8 98 2-101 91-205 (435)
158 2qtf_A Protein HFLX, GTP-bindi 99.2 7E-11 2.4E-15 94.4 8.9 98 12-111 253-356 (364)
159 2c78_A Elongation factor TU-A; 99.2 2.5E-11 8.6E-16 98.2 6.4 102 2-109 82-212 (405)
160 1kk1_A EIF2gamma; initiation o 99.2 5.5E-11 1.9E-15 96.4 8.3 100 2-109 90-200 (410)
161 3p26_A Elongation factor 1 alp 99.2 7.3E-11 2.5E-15 97.6 8.2 94 2-98 118-227 (483)
162 3izy_P Translation initiation 99.1 2.3E-11 7.9E-16 101.5 4.7 100 2-108 59-167 (537)
163 1d2e_A Elongation factor TU (E 99.1 5.1E-11 1.8E-15 96.2 6.0 102 2-109 73-195 (397)
164 1zun_B Sulfate adenylate trans 99.1 3E-11 1E-15 98.6 4.5 93 2-100 111-215 (434)
165 2ged_A SR-beta, signal recogni 99.1 1.6E-10 5.6E-15 83.4 6.9 66 2-67 98-173 (193)
166 3ec1_A YQEH GTPase; atnos1, at 99.1 2E-10 6.7E-15 92.0 7.7 90 9-107 64-160 (369)
167 1r5b_A Eukaryotic peptide chai 99.1 1.7E-11 5.9E-16 100.9 1.4 97 2-100 128-243 (467)
168 2xtp_A GTPase IMAP family memb 99.1 1.7E-10 5.9E-15 87.6 6.3 95 13-111 102-210 (260)
169 3j2k_7 ERF3, eukaryotic polype 99.1 2.2E-10 7.4E-15 93.7 7.1 95 2-101 102-217 (439)
170 2qag_A Septin-2, protein NEDD5 99.1 1.6E-11 5.5E-16 98.0 0.2 94 12-112 128-236 (361)
171 1zo1_I IF2, translation initia 99.1 4.4E-11 1.5E-15 99.1 2.8 95 2-105 58-163 (501)
172 2aka_B Dynamin-1; fusion prote 99.0 6.8E-11 2.3E-15 91.3 3.0 93 9-106 154-250 (299)
173 3izq_1 HBS1P, elongation facto 99.0 1.1E-10 3.7E-15 99.1 4.2 94 2-99 252-362 (611)
174 3avx_A Elongation factor TS, e 99.0 2.5E-10 8.6E-15 101.9 6.1 101 2-108 366-485 (1289)
175 4dcu_A GTP-binding protein ENG 99.0 2.3E-10 7.9E-15 93.9 4.4 90 9-109 95-185 (456)
176 1f60_A Elongation factor EEF1A 99.0 1.8E-10 6.3E-15 94.6 3.3 93 2-99 92-202 (458)
177 1udx_A The GTP-binding protein 99.0 2.7E-09 9.4E-14 86.6 10.0 95 14-112 233-328 (416)
178 2j69_A Bacterial dynamin-like 99.0 5.2E-10 1.8E-14 96.2 5.6 103 2-109 181-325 (695)
179 2dy1_A Elongation factor G; tr 98.9 2.9E-09 9.9E-14 91.2 9.2 57 2-63 81-139 (665)
180 3t34_A Dynamin-related protein 98.9 8.2E-10 2.8E-14 87.9 3.4 92 9-104 165-256 (360)
181 3lxx_A GTPase IMAP family memb 98.9 9.1E-09 3.1E-13 77.1 8.7 96 11-109 107-214 (239)
182 2wsm_A Hydrogenase expression/ 98.9 3E-09 1E-13 78.5 5.7 85 15-109 128-214 (221)
183 1puj_A YLQF, conserved hypothe 98.9 4.1E-09 1.4E-13 81.4 6.6 94 3-108 7-105 (282)
184 3t5d_A Septin-7; GTP-binding p 98.8 1.3E-09 4.5E-14 83.6 2.3 86 17-108 116-203 (274)
185 1dar_A EF-G, elongation factor 98.8 3.8E-08 1.3E-12 84.6 11.0 58 2-64 84-143 (691)
186 3lxw_A GTPase IMAP family memb 98.8 2.1E-08 7.3E-13 75.8 8.0 94 14-110 103-209 (247)
187 2h5e_A Peptide chain release f 98.8 6.2E-08 2.1E-12 80.9 11.5 58 2-64 89-148 (529)
188 1jwy_B Dynamin A GTPase domain 98.8 1.6E-08 5.6E-13 78.5 7.5 99 9-112 160-265 (315)
189 1pui_A ENGB, probable GTP-bind 98.7 2.6E-08 9E-13 72.6 7.5 87 15-109 107-199 (210)
190 1yrb_A ATP(GTP)binding protein 98.7 8.4E-09 2.9E-13 78.0 4.3 101 2-109 116-257 (262)
191 3mca_A HBS1, elongation factor 98.7 4.3E-09 1.5E-13 89.0 2.2 97 2-107 262-395 (592)
192 3p32_A Probable GTPase RV1496/ 98.7 5.2E-09 1.8E-13 83.2 2.4 96 2-109 179-284 (355)
193 2hf9_A Probable hydrogenase ni 98.7 1.7E-09 6E-14 80.0 -1.1 58 51-109 165-224 (226)
194 2rdo_7 EF-G, elongation factor 98.6 2E-07 6.8E-12 80.3 10.8 58 2-64 89-148 (704)
195 2xex_A Elongation factor G; GT 98.6 2.4E-07 8.2E-12 79.7 11.2 58 2-64 82-141 (693)
196 1wxq_A GTP-binding protein; st 98.6 5.6E-09 1.9E-13 84.3 0.7 56 50-111 214-273 (397)
197 2qnr_A Septin-2, protein NEDD5 98.6 5.7E-09 2E-13 81.2 0.4 61 49-111 154-216 (301)
198 2qag_C Septin-7; cell cycle, c 98.6 6.6E-09 2.3E-13 84.4 0.5 93 10-108 130-226 (418)
199 1t9h_A YLOQ, probable GTPase E 98.5 4.7E-08 1.6E-12 76.3 2.8 87 9-100 79-168 (307)
200 3cnl_A YLQF, putative uncharac 98.5 6.4E-08 2.2E-12 73.9 3.3 82 9-105 14-97 (262)
201 2p67_A LAO/AO transport system 98.4 3.6E-07 1.2E-11 72.2 6.8 96 2-108 156-260 (341)
202 3def_A T7I23.11 protein; chlor 98.4 4.4E-07 1.5E-11 69.0 6.0 68 2-70 91-171 (262)
203 2www_A Methylmalonic aciduria 98.4 1.7E-06 5.7E-11 68.6 9.1 95 2-108 174-278 (349)
204 2x2e_A Dynamin-1; nitration, h 98.3 4.3E-08 1.5E-12 77.8 -0.5 92 9-105 159-254 (353)
205 2rcn_A Probable GTPase ENGC; Y 98.3 2.5E-06 8.6E-11 67.8 7.8 84 14-103 128-213 (358)
206 1h65_A Chloroplast outer envel 98.1 4.4E-06 1.5E-10 63.6 6.2 67 2-70 94-174 (270)
207 2qpt_A EH domain-containing pr 98.1 1.2E-06 4.1E-11 73.4 2.5 53 9-65 181-233 (550)
208 1n0u_A EF-2, elongation factor 98.1 3E-06 1E-10 74.4 4.7 57 2-63 105-163 (842)
209 2qm8_A GTPase/ATPase; G protei 98.0 1.2E-05 3.9E-10 63.5 7.0 96 2-108 155-260 (337)
210 2dby_A GTP-binding protein; GD 98.0 1.5E-05 5.3E-10 63.6 7.7 52 50-102 201-255 (368)
211 1jal_A YCHF protein; nucleotid 98.0 6.3E-05 2.2E-09 59.9 11.0 42 50-91 199-240 (363)
212 3vqt_A RF-3, peptide chain rel 98.0 4.8E-05 1.7E-09 63.7 10.6 57 2-63 107-165 (548)
213 3zvr_A Dynamin-1; hydrolase, D 98.0 2.6E-06 9E-11 73.7 2.5 100 9-113 179-285 (772)
214 3j25_A Tetracycline resistance 97.6 8.8E-05 3E-09 63.2 6.2 57 2-63 74-132 (638)
215 4fn5_A EF-G 1, elongation fact 97.2 0.0027 9.2E-08 54.7 11.0 57 2-63 92-150 (709)
216 4a9a_A Ribosome-interacting GT 95.9 0.044 1.5E-06 43.7 8.8 68 12-81 145-221 (376)
217 2j37_W Signal recognition part 91.3 0.082 2.8E-06 43.8 2.0 78 16-106 213-310 (504)
218 3end_A Light-independent proto 90.5 2.9 9.8E-05 31.6 10.0 67 11-85 174-241 (307)
219 4dzz_A Plasmid partitioning pr 89.9 0.65 2.2E-05 32.7 5.6 72 9-85 90-162 (206)
220 3cwq_A Para family chromosome 89.8 1.9 6.6E-05 30.8 8.1 72 8-85 82-153 (209)
221 2ohf_A Protein OLA1, GTP-bindi 88.5 0.19 6.4E-06 40.3 2.0 31 2-32 93-132 (396)
222 3dm5_A SRP54, signal recogniti 83.1 3.4 0.00012 33.5 6.8 65 14-89 210-274 (443)
223 3ea0_A ATPase, para family; al 82.5 11 0.00038 26.9 10.0 72 9-87 133-204 (245)
224 4a9a_A Ribosome-interacting GT 81.7 4.9 0.00017 31.8 7.2 52 49-108 248-299 (376)
225 1j8m_F SRP54, signal recogniti 81.1 3 0.0001 31.7 5.6 71 14-99 210-281 (297)
226 3k9g_A PF-32 protein; ssgcid, 80.0 4.2 0.00014 29.9 6.0 50 9-61 159-208 (267)
227 2v3c_C SRP54, signal recogniti 79.3 1.6 5.4E-05 35.3 3.6 58 16-85 210-269 (432)
228 1wcv_1 SOJ, segregation protei 79.2 7.2 0.00025 28.5 7.0 54 9-63 126-182 (257)
229 2qag_B Septin-6, protein NEDD5 76.8 1.1 3.8E-05 36.2 2.0 41 49-89 175-217 (427)
230 3kl4_A SRP54, signal recogniti 72.5 4.3 0.00015 32.8 4.4 63 16-89 211-273 (433)
231 1tq4_A IIGP1, interferon-induc 71.2 3.3 0.00011 33.2 3.5 63 50-113 175-257 (413)
232 1hyq_A MIND, cell division inh 68.9 27 0.00094 25.2 8.0 69 9-85 125-193 (263)
233 1g3q_A MIND ATPase, cell divis 67.8 24 0.0008 25.0 7.3 51 9-63 126-176 (237)
234 3pzx_A Formate--tetrahydrofola 67.7 9.7 0.00033 31.5 5.5 70 33-109 361-430 (557)
235 3sop_A Neuronal-specific septi 66.2 11 0.00037 28.2 5.3 45 14-64 109-154 (270)
236 3do6_A Formate--tetrahydrofola 63.9 26 0.00088 28.9 7.2 70 32-108 346-417 (543)
237 3kjh_A CO dehydrogenase/acetyl 63.4 20 0.00068 25.5 6.2 49 9-61 146-194 (254)
238 1ni3_A YCHF GTPase, YCHF GTP-b 63.4 12 0.00041 29.8 5.3 42 50-91 224-269 (392)
239 1cp2_A CP2, nitrogenase iron p 58.4 49 0.0017 23.9 10.2 66 15-85 139-205 (269)
240 3q9l_A Septum site-determining 57.4 16 0.00054 26.4 4.7 53 9-62 128-185 (260)
241 2oze_A ORF delta'; para, walke 55.4 34 0.0012 25.3 6.4 52 10-63 170-225 (298)
242 2afh_E Nitrogenase iron protei 54.7 61 0.0021 23.8 8.5 66 15-85 142-208 (289)
243 2ph1_A Nucleotide-binding prot 53.2 21 0.00073 26.0 4.9 43 15-62 151-194 (262)
244 3uc9_A Increased recombination 52.4 5.5 0.00019 29.4 1.5 66 18-88 104-169 (233)
245 4hs4_A Chromate reductase; tri 51.2 16 0.00056 25.8 3.8 48 12-59 69-118 (199)
246 2m1z_A LMO0427 protein; homolo 50.9 10 0.00035 24.3 2.4 29 4-32 45-75 (106)
247 3szr_A Interferon-induced GTP- 48.7 12 0.00041 31.4 3.2 59 2-64 162-228 (608)
248 2l82_A Designed protein OR32; 48.5 52 0.0018 21.2 5.7 64 14-90 75-138 (162)
249 3bfv_A CAPA1, CAPB2, membrane 46.6 21 0.00073 26.4 4.0 46 13-63 211-257 (271)
250 2fz5_A Flavodoxin; alpha/beta 46.5 17 0.00058 23.3 3.1 68 13-85 43-112 (137)
251 2ale_A SNU13, NHP2/L7AE family 45.6 15 0.00053 24.4 2.7 74 16-107 48-121 (134)
252 3k1y_A Oxidoreductase; structu 45.0 19 0.00064 25.4 3.3 48 11-59 80-127 (191)
253 1rtt_A Conserved hypothetical 42.3 13 0.00046 25.7 2.2 47 13-59 69-117 (193)
254 2vzf_A NADH-dependent FMN redu 42.2 14 0.00047 25.9 2.2 69 13-84 66-135 (197)
255 3fwy_A Light-independent proto 42.0 1.1E+02 0.0038 23.1 9.7 65 13-85 183-248 (314)
256 3svl_A Protein YIEF; E. coli C 41.8 32 0.0011 24.0 4.1 48 11-58 67-116 (193)
257 3u7r_A NADPH-dependent FMN red 41.6 26 0.0009 24.6 3.6 48 11-58 62-112 (190)
258 1rli_A Trp repressor binding p 41.1 25 0.00084 23.9 3.4 47 12-58 67-123 (184)
259 1t0i_A YLR011WP; FMN binding p 41.0 19 0.00064 24.8 2.8 69 12-85 80-148 (191)
260 2ark_A Flavodoxin; FMN, struct 40.7 36 0.0012 23.4 4.2 49 12-60 48-98 (188)
261 2xzm_U Ribosomal protein L7AE 39.8 21 0.00071 23.5 2.7 14 49-62 66-79 (126)
262 3gfs_A FMN-dependent NADPH-azo 39.6 12 0.00041 25.5 1.5 71 13-85 60-130 (174)
263 2a5l_A Trp repressor binding p 39.3 44 0.0015 22.9 4.5 49 12-60 67-118 (200)
264 2zay_A Response regulator rece 39.3 71 0.0024 20.1 8.0 75 16-107 52-126 (147)
265 3fvw_A Putative NAD(P)H-depend 38.8 24 0.00084 24.6 3.1 71 11-83 62-141 (192)
266 3rl5_A Metallophosphoesterase 38.8 11 0.00036 28.9 1.2 46 14-62 77-122 (296)
267 2xj4_A MIPZ; replication, cell 38.5 48 0.0016 24.5 4.9 54 9-63 118-191 (286)
268 1s2d_A Purine trans deoxyribos 37.7 49 0.0017 22.8 4.4 39 13-57 78-116 (167)
269 2pd2_A Hypothetical protein ST 37.5 67 0.0023 19.7 4.8 64 22-88 3-68 (108)
270 1bif_A 6-phosphofructo-2-kinas 37.5 49 0.0017 26.5 5.1 34 11-45 115-148 (469)
271 2zki_A 199AA long hypothetical 36.7 51 0.0017 22.6 4.5 75 11-85 65-142 (199)
272 3lcm_A SMU.1420, putative oxid 36.5 37 0.0013 23.7 3.7 33 12-44 69-101 (196)
273 1ydg_A Trp repressor binding p 36.3 45 0.0015 23.2 4.2 74 12-85 74-150 (211)
274 1d4a_A DT-diaphorase, quinone 35.3 40 0.0014 25.0 4.0 47 13-59 90-148 (273)
275 2yvt_A Hypothetical protein AQ 34.5 50 0.0017 23.5 4.4 17 15-31 31-47 (260)
276 2q62_A ARSH; alpha/beta, flavo 34.2 24 0.00082 26.0 2.5 70 12-83 94-167 (247)
277 1ko7_A HPR kinase/phosphatase; 34.2 32 0.0011 26.5 3.2 51 49-107 79-129 (314)
278 3ha2_A NADPH-quinone reductase 33.5 52 0.0018 22.7 4.1 47 12-58 47-100 (177)
279 3r6w_A FMN-dependent NADH-azor 33.4 36 0.0012 23.9 3.3 31 13-43 84-114 (212)
280 1zpw_X Hypothetical protein TT 33.0 57 0.002 19.9 3.8 13 19-31 5-17 (90)
281 1uf3_A Hypothetical protein TT 32.9 54 0.0018 22.7 4.2 42 16-62 32-75 (228)
282 1t5b_A Acyl carrier protein ph 32.8 31 0.0011 23.7 2.8 73 12-84 82-168 (201)
283 2hpv_A FMN-dependent NADH-azor 32.4 47 0.0016 23.0 3.8 32 13-44 91-122 (208)
284 1sqs_A Conserved hypothetical 32.2 45 0.0015 24.0 3.7 71 13-85 76-149 (242)
285 2amj_A Modulator of drug activ 31.5 78 0.0027 22.2 4.8 33 12-44 66-98 (204)
286 5nul_A Flavodoxin; electron tr 31.0 46 0.0016 21.3 3.3 67 13-84 42-110 (138)
287 2kyr_A Fructose-like phosphotr 30.9 22 0.00075 23.0 1.6 25 4-28 48-72 (111)
288 1ccw_A Protein (glutamate muta 30.7 1.1E+02 0.0038 19.9 9.9 82 15-107 53-134 (137)
289 3ez9_A Para; DNA binding, wing 30.5 1.2E+02 0.0043 23.4 6.3 52 9-61 262-321 (403)
290 1uoz_A Putative cellulase; hyd 30.5 76 0.0026 24.4 4.8 39 17-57 90-138 (315)
291 3f2v_A General stress protein 29.9 47 0.0016 23.3 3.4 33 12-44 54-86 (192)
292 3jyw_G 60S ribosomal protein L 29.9 34 0.0012 22.1 2.4 40 16-62 41-80 (113)
293 3exc_X Uncharacterized protein 29.7 75 0.0026 19.5 3.9 12 19-30 5-16 (91)
294 2aif_A Ribosomal protein L7A; 29.0 62 0.0021 21.4 3.6 48 49-107 83-130 (135)
295 3la6_A Tyrosine-protein kinase 28.4 1.2E+02 0.004 22.6 5.5 48 12-63 220-267 (286)
296 3gt7_A Sensor protein; structu 28.3 1.2E+02 0.004 19.4 8.4 77 16-109 51-127 (154)
297 3cio_A ETK, tyrosine-protein k 28.1 57 0.0019 24.4 3.8 46 13-63 233-279 (299)
298 3j21_Z 50S ribosomal protein L 28.1 1.1E+02 0.0037 18.8 4.8 15 49-63 56-71 (99)
299 3e70_C DPA, signal recognition 28.0 62 0.0021 24.8 4.0 69 16-98 241-309 (328)
300 3ezx_A MMCP 1, monomethylamine 27.9 75 0.0026 22.7 4.2 44 15-58 142-185 (215)
301 3hyn_A Putative signal transdu 27.0 70 0.0024 22.6 3.7 46 10-59 73-118 (189)
302 3b6i_A Flavoprotein WRBA; flav 26.7 38 0.0013 23.2 2.4 49 11-59 63-114 (198)
303 2ec4_A FAS-associated factor 1 26.2 1.6E+02 0.0055 20.2 6.8 47 12-60 85-140 (178)
304 3p7m_A Malate dehydrogenase; p 25.8 61 0.0021 24.8 3.6 49 12-62 69-127 (321)
305 3tem_A Ribosyldihydronicotinam 25.8 70 0.0024 23.0 3.8 48 13-60 89-148 (228)
306 2ivy_A Hypothetical protein SS 25.6 76 0.0026 19.8 3.4 22 84-107 36-57 (101)
307 2jnb_A NHP2-like protein 1; sp 25.1 28 0.00097 23.5 1.4 49 48-107 91-139 (144)
308 3jte_A Response regulator rece 25.0 1.3E+02 0.0044 18.7 8.2 40 16-61 49-88 (143)
309 1eiw_A Hypothetical protein MT 25.0 89 0.0031 19.9 3.7 40 12-56 34-73 (111)
310 3e96_A Dihydrodipicolinate syn 25.0 2.2E+02 0.0077 21.4 6.7 63 15-86 105-167 (316)
311 3kht_A Response regulator; PSI 24.7 1.3E+02 0.0045 18.7 7.5 24 38-61 69-92 (144)
312 1byi_A Dethiobiotin synthase; 24.5 1.7E+02 0.006 20.0 8.7 59 20-85 141-200 (224)
313 1oju_A MDH, malate dehydrogena 24.3 59 0.002 24.5 3.2 50 11-62 64-123 (294)
314 3i42_A Response regulator rece 24.3 1.2E+02 0.0042 18.3 4.4 43 16-62 47-89 (127)
315 2ewd_A Lactate dehydrogenase,; 23.9 82 0.0028 23.7 4.0 47 13-61 69-125 (317)
316 3s2y_A Chromate reductase; ura 29.5 17 0.00057 25.7 0.0 47 12-58 69-117 (199)
317 1f8y_A Nucleoside 2-deoxyribos 23.5 60 0.002 22.1 2.8 41 13-59 75-115 (157)
318 2d4a_B Malate dehydrogenase; a 23.5 88 0.003 23.6 4.1 47 13-61 64-120 (308)
319 2q9u_A A-type flavoprotein; fl 23.2 89 0.003 24.2 4.2 66 13-83 304-371 (414)
320 3nep_X Malate dehydrogenase; h 23.1 69 0.0024 24.4 3.4 49 12-62 65-123 (314)
321 4ici_A Putative flavoprotein; 22.8 1.1E+02 0.0039 20.6 4.2 44 13-60 84-127 (171)
322 3tl2_A Malate dehydrogenase; c 22.8 76 0.0026 24.2 3.6 49 12-62 74-132 (315)
323 3hdg_A Uncharacterized protein 22.7 1.4E+02 0.0048 18.3 5.4 40 16-61 51-90 (137)
324 3snk_A Response regulator CHEY 22.6 1.2E+02 0.0043 18.6 4.2 71 16-105 59-129 (135)
325 3nhm_A Response regulator; pro 22.5 1.1E+02 0.0039 18.6 4.0 76 16-109 47-122 (133)
326 2v6b_A L-LDH, L-lactate dehydr 22.3 73 0.0025 23.9 3.4 48 13-62 64-121 (304)
327 3grc_A Sensor protein, kinase; 22.2 1.1E+02 0.0038 18.9 3.9 78 16-109 50-127 (140)
328 3hhp_A Malate dehydrogenase; M 22.2 82 0.0028 24.0 3.6 49 12-62 65-123 (312)
329 3cf4_G Acetyl-COA decarboxylas 22.1 1E+02 0.0035 20.8 3.9 35 49-87 34-68 (170)
330 3ehd_A Uncharacterized conserv 21.9 1.1E+02 0.0036 21.0 3.8 18 13-30 66-83 (162)
331 3eqz_A Response regulator; str 21.9 1.2E+02 0.0041 18.5 4.0 39 17-61 47-85 (135)
332 2rdm_A Response regulator rece 21.6 1.4E+02 0.0049 18.0 4.5 41 16-62 50-91 (132)
333 3gvi_A Malate dehydrogenase; N 21.4 1E+02 0.0035 23.5 4.1 49 12-62 71-129 (324)
334 2j48_A Two-component sensor ki 21.4 1.3E+02 0.0045 17.5 4.4 41 17-61 46-86 (119)
335 3daq_A DHDPS, dihydrodipicolin 20.8 2.6E+02 0.009 20.7 7.0 62 15-85 96-161 (292)
336 2fzv_A Putative arsenical resi 20.8 48 0.0016 24.9 2.0 70 12-83 119-192 (279)
337 1k68_A Phytochrome response re 20.7 1.5E+02 0.0052 18.0 8.0 42 16-61 55-96 (140)
338 2wkj_A N-acetylneuraminate lya 20.5 2.7E+02 0.0093 20.8 8.1 40 15-56 105-144 (303)
339 1ldn_A L-lactate dehydrogenase 20.2 1.1E+02 0.0037 23.2 3.9 48 12-61 70-127 (316)
340 2r48_A Phosphotransferase syst 20.1 37 0.0013 21.6 1.1 23 5-27 46-68 (106)
341 3d0c_A Dihydrodipicolinate syn 20.0 2.9E+02 0.0098 20.8 7.1 62 15-85 105-166 (314)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=5.3e-28 Score=181.10 Aligned_cols=107 Identities=26% Similarity=0.356 Sum_probs=99.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||+|++ +++.||+++|++|+|||+++++||+.+..|+..+.... .+++|+||||||+||.+.+.|+.+++..++..
T Consensus 69 taGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~ 147 (216)
T 4dkx_A 69 TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 147 (216)
T ss_dssp CSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHH
Confidence 8999985 99999999999999999999999999999999998876 47899999999999998899999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+++.|+||||++|. ||+++|+.|++.+...
T Consensus 148 ~~~~~~e~SAktg~-nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 148 LNVMFIETSAKAGY-NVKQLFRRVAAALPGM 177 (216)
T ss_dssp HTCEEEEEBTTTTB-SHHHHHHHHHHHC---
T ss_pred hCCeeEEEeCCCCc-CHHHHHHHHHHHHHhh
Confidence 99999999999999 9999999999988753
No 2
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=2.9e-22 Score=147.12 Aligned_cols=107 Identities=27% Similarity=0.348 Sum_probs=97.3
Q ss_pred CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+.++.......++|++|||||+|+.+.+.++.+++..++.
T Consensus 79 t~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~ 158 (195)
T 3cbq_A 79 IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG 158 (195)
T ss_dssp CCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred cCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH
Confidence 7899862 7788999999999999999999999999999998876533579999999999998878888999999999
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++.|++|||++|. ||+++|++|++.+.+
T Consensus 159 ~~~~~~~e~Sa~~~~-~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 159 TLSCKHIETSAALHH-NTRELFEGAVRQIRL 188 (195)
T ss_dssp HTTCEEEEEBTTTTB-SHHHHHHHHHHHHHT
T ss_pred HhCCEEEEEcCCCCC-CHHHHHHHHHHHHHH
Confidence 999999999999999 999999999998875
No 3
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=2.5e-22 Score=144.80 Aligned_cols=109 Identities=26% Similarity=0.323 Sum_probs=97.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+..|+.++.......++|++||+||+|+.+.+.+..+++..++..
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (181)
T 3t5g_A 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES 140 (181)
T ss_dssp CCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH
Confidence 7999884 88899999999999999999999999999999998775446899999999999988888999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+++.|+++||++|. ||+++|.+|++.+.+..
T Consensus 141 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 141 WNAAFLESSAKENQ-TAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTCEEEECCTTSHH-HHHHHHHHHHHHHHTC-
T ss_pred hCCcEEEEecCCCC-CHHHHHHHHHHHHHHhc
Confidence 99999999999999 99999999999988743
No 4
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.4e-22 Score=150.99 Aligned_cols=107 Identities=30% Similarity=0.444 Sum_probs=94.8
Q ss_pred CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|++. .+...|++.+|++|+|||+++++||+.+..|+..+.......++|+||||||+||.+.+.+..+++..++.
T Consensus 94 t~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~ 173 (211)
T 2g3y_A 94 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV 173 (211)
T ss_dssp CTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH
Confidence 778775 37788999999999999999999999999999888764323579999999999998778888888888998
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++.|++|||++|. ||+++|++|++.+..
T Consensus 174 ~~~~~~~e~SAk~g~-~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 174 VFDCKFIETSAAVQH-NVKELFEGIVRQVRL 203 (211)
T ss_dssp HHTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 899999999999999 999999999998854
No 5
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=4e-22 Score=141.59 Aligned_cols=107 Identities=32% Similarity=0.474 Sum_probs=85.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus 56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (166)
T 3q72_A 56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV 135 (166)
T ss_dssp CC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH
T ss_pred CCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999988765446899999999999988888999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++|||++|. ||+++|++|++.+.+
T Consensus 136 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 136 FDCKFIETSAALHH-NVQALFEGVVRQIRL 164 (166)
T ss_dssp TTCEEEECBGGGTB-SHHHHHHHHHHHHHH
T ss_pred hCCcEEEeccCCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999988764
No 6
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=3.8e-22 Score=142.09 Aligned_cols=107 Identities=27% Similarity=0.350 Sum_probs=94.7
Q ss_pred CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++.
T Consensus 58 ~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (169)
T 3q85_A 58 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG 137 (169)
T ss_dssp CCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH
Confidence 7899873 7788999999999999999999999999999999887644589999999999998888899999999999
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++.|+++||++|. ||+++|++|++.+..
T Consensus 138 ~~~~~~~~~Sa~~~~-~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 138 TLSCKHIETSAALHH-NTRELFEGAVRQIRL 167 (169)
T ss_dssp HTTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred HcCCcEEEecCccCC-CHHHHHHHHHHHHHh
Confidence 999999999999999 999999999998765
No 7
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.88 E-value=5.7e-22 Score=143.15 Aligned_cols=107 Identities=34% Similarity=0.476 Sum_probs=98.6
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus 73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~ 152 (183)
T 3kkq_A 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK 152 (183)
T ss_dssp CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH
Confidence 789987 388999999999999999999999999999999998765457899999999999988888999999999999
Q ss_pred cCCeEEEEccc-CCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVA-DNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak-~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.|+++||+ +|. ||+++|++|++.+.+
T Consensus 153 ~~~~~~~~Sa~~~~~-~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 153 YNIPYIETSAKDPPL-NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HTCCEEEEBCSSSCB-SHHHHHHHHHHHHHH
T ss_pred hCCeEEEeccCCCCC-CHHHHHHHHHHHHhh
Confidence 99999999999 999 999999999988764
No 8
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=146.49 Aligned_cols=111 Identities=30% Similarity=0.364 Sum_probs=96.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+...+.+..+++..++..
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 158 (201)
T 3oes_A 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158 (201)
T ss_dssp ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH
Confidence 7899874 88999999999999999999999999999999998775446799999999999988888999999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.++.|+++||++|. ||+++|.+|++.+.+....
T Consensus 159 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 159 WGATFMESSARENQ-LTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HTCEEEECCTTCHH-HHHHHHHHHHHHHHHC---
T ss_pred hCCeEEEEeCCCCC-CHHHHHHHHHHHHHhhhhh
Confidence 99999999999999 9999999999999875444
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=6.1e-22 Score=143.00 Aligned_cols=106 Identities=30% Similarity=0.410 Sum_probs=86.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 142 (183)
T 2fu5_C 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALD 142 (183)
T ss_dssp C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH
T ss_pred CCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHH
Confidence 7898874 78899999999999999999999999999999998764 35799999999999988788888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|.+|++.+.+
T Consensus 143 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 143 YGIKFMETSAKANI-NVENAFFTLARDIKA 171 (183)
T ss_dssp HTCEEEECCC---C-CHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 10
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=4.8e-22 Score=147.92 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=96.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDY-AVSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..|++++|++|+|||++++++|+. +..|+..+.... +++|++|||||+|+.+. +
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 159 (214)
T 3q3j_B 82 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQA 159 (214)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred CCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccC
Confidence 7899874 88999999999999999999999999 688999998875 68999999999999753 6
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHhcCC
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESRGGP 111 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~~~~ 111 (173)
.+..+++..++..+++ .|++|||++|. | |+++|++|++.+.+..
T Consensus 160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~-g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 160 PISYEQGCAIAKQLGAEIYLEGSAFTSE-KSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCH-HHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHcCCCEEEEeccCCCc-ccHHHHHHHHHHHHhccC
Confidence 7889999999999998 89999999999 9 9999999999988743
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=145.15 Aligned_cols=106 Identities=26% Similarity=0.309 Sum_probs=97.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 163 (201)
T 2hup_A 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH 163 (201)
T ss_dssp CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 8999884 88899999999999999999999999999999998765 46799999999999987788889999999999
Q ss_pred cCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++ .+++|||++|. ||+++|.+|++.+.+
T Consensus 164 ~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 YDILCAIETSAKDSS-NVEEAFLRVATELIM 193 (201)
T ss_dssp TTCSEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 998 89999999999 999999999998875
No 12
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=139.46 Aligned_cols=107 Identities=28% Similarity=0.448 Sum_probs=90.4
Q ss_pred CCCCCC--c--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTE--G--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~--~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|+++ . +...|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 138 (175)
T 2nzj_A 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA 138 (175)
T ss_dssp CC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred cCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH
Confidence 788876 2 678899999999999999999999999999998887643357999999999999887888888888999
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..+++.+++|||++|. ||+++|++|++.+.+
T Consensus 139 ~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 139 VVFDCKFIETSATLQH-NVAELFEGVVRQLRL 169 (175)
T ss_dssp HHHTSEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence 8899999999999999 999999999998865
No 13
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.87 E-value=1.1e-21 Score=142.79 Aligned_cols=104 Identities=22% Similarity=0.386 Sum_probs=92.9
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC--CCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--HLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~ 79 (173)
|+|+++.. |++++|++|+|||++++.+|+.+..|+..+.......++|++|||||+|+. ..+.++.+++..++..
T Consensus 74 t~G~~~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~ 150 (184)
T 3ihw_A 74 EGGPPELQ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD 150 (184)
T ss_dssp CSSSCCHH---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred CCCChhhh---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH
Confidence 78887644 899999999999999999999999999999886533579999999999993 5678889999999999
Q ss_pred cC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YN-CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++ +.|++|||++|. ||+++|++|++.+.+
T Consensus 151 ~~~~~~~e~Sa~~~~-gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 151 LKRCTYYETCATYGL-NVERVFQDVAQKVVA 180 (184)
T ss_dssp TTTCEEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred cCCCeEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence 87 899999999999 999999999998875
No 14
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=2.1e-21 Score=142.16 Aligned_cols=107 Identities=29% Similarity=0.401 Sum_probs=93.4
Q ss_pred CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|++. .+...|++.+|++|+|||+++++||+.+..|+..+.......++|+++|+||+|+...+.+..+++..++.
T Consensus 63 t~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~ 142 (192)
T 2cjw_A 63 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142 (192)
T ss_dssp CCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred eccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH
Confidence 666654 48889999999999999999999999999999888775433579999999999998777888888888888
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++.|++|||++|. ||+++|++|++.+..
T Consensus 143 ~~~~~~~e~SA~~g~-~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 143 VFDXKFIETSAAVQH-NVKELFEGIVRQVRL 172 (192)
T ss_dssp HTTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred HhCCceEEeccccCC-CHHHHHHHHHHHHHh
Confidence 889999999999999 999999999998864
No 15
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=2e-21 Score=137.56 Aligned_cols=107 Identities=27% Similarity=0.388 Sum_probs=95.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+++..+++..++..
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 138 (168)
T 1u8z_A 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ 138 (168)
T ss_dssp CCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999998877445899999999999987778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. ||+++|++|++.+.+
T Consensus 139 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 139 WNVNYVETSAKTRA-NVDKVFFDLMREIRA 167 (168)
T ss_dssp HTCEEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred cCCeEEEeCCCCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999998764
No 16
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.87 E-value=2.1e-21 Score=139.34 Aligned_cols=109 Identities=25% Similarity=0.358 Sum_probs=95.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCc-EEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVP-VMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+..|+..+..... ..+.| ++||+||+|+.+.+.+..+++..++
T Consensus 63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 142 (178)
T 2hxs_A 63 IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 142 (178)
T ss_dssp CTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred CCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence 8999884 889999999999999999999999999999998877531 02455 8999999999877788888999999
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
..+++.++++||++|. ||+++|++|++.+.+..
T Consensus 143 ~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 143 QENGFSSHFVSAKTGD-SVFLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHTCEEEEECTTTCT-THHHHHHHHHHHHTTCC
T ss_pred HHcCCcEEEEeCCCCC-CHHHHHHHHHHHHHhhh
Confidence 9999999999999999 99999999999887643
No 17
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=2.5e-21 Score=137.24 Aligned_cols=106 Identities=25% Similarity=0.411 Sum_probs=96.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus 58 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (167)
T 1c1y_A 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137 (167)
T ss_dssp ECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999988875446899999999999988788888899999988
Q ss_pred c-CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 80 Y-NCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+ ++.++++||++|. |++++|++|++.+.
T Consensus 138 ~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 138 WCNCAFLESSAKSKI-NVNEIFYDLVRQIN 166 (167)
T ss_dssp TTSCEEEECBTTTTB-SHHHHHHHHHHHHT
T ss_pred ccCCcEEEecCCCCC-CHHHHHHHHHHHHh
Confidence 7 7899999999999 99999999998764
No 18
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.87 E-value=2.6e-21 Score=138.85 Aligned_cols=107 Identities=25% Similarity=0.368 Sum_probs=97.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 143 (181)
T 2fn4_A 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS 143 (181)
T ss_dssp CCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 7999874 88999999999999999999999999999999986655456899999999999988788888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|.+.+.+
T Consensus 144 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 144 HHVAYFEASAKLRL-NVDEAFEQLVRAVRK 172 (181)
T ss_dssp TTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred cCCeEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 19
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=142.45 Aligned_cols=107 Identities=33% Similarity=0.539 Sum_probs=92.9
Q ss_pred CCCCCCc-cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG-TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~-~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|++++ ....|++++|++|+|||++++++|+.+..|+..+..... ..++|++|||||+|+.+.+.++.+++..++.
T Consensus 76 t~G~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 155 (187)
T 3c5c_A 76 TADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG 155 (187)
T ss_dssp CCC---CCCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred CCCCCcchhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH
Confidence 7899874 236799999999999999999999999999999887641 2579999999999998878899999999999
Q ss_pred hcCCeEEEEcc-cCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSV-ADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sa-k~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++.|++||| ++|. ||+++|+.|++.+.+
T Consensus 156 ~~~~~~~e~Sa~~~g~-gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 156 RFGCLFFEVSACLDFE-HVQHVFHEAVREARR 186 (187)
T ss_dssp HHTCEEEECCSSSCSH-HHHHHHHHHHHHHHC
T ss_pred HcCCcEEEEeecCccc-cHHHHHHHHHHHHhh
Confidence 99999999999 8999 999999999988764
No 20
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.86 E-value=3.9e-21 Score=138.12 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=90.3
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCC--CCccCCHHHHHHHh
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLE--HLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~ 77 (173)
|+|+++ ..|++++|++|+|||++++++|+.+..|+..+..... ..++|++|||||+|+. ..+.+..+++..++
T Consensus 61 t~G~~~---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~ 137 (178)
T 2iwr_A 61 EAGAPD---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX 137 (178)
T ss_dssp CSSSCC---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH
T ss_pred CCCCch---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH
Confidence 788876 6799999999999999999999999998777665542 2579999999999993 55778889999988
Q ss_pred hhc-CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 VKY-NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ~~~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
... ++.|++|||++|. ||+++|++|++.+.+
T Consensus 138 ~~~~~~~~~~~Sa~~~~-~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 138 ADMKRCSYYETXATYGL-NVDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHSSEEEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred HhhcCCeEEEEeccccC-CHHHHHHHHHHHHHH
Confidence 876 6889999999999 999999999998875
No 21
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=2.3e-21 Score=141.29 Aligned_cols=106 Identities=27% Similarity=0.347 Sum_probs=97.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 77 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 155 (191)
T 2a5j_A 77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFARE 155 (191)
T ss_dssp CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHH
Confidence 7899874 78899999999999999999999999999999998765 36799999999999987778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|++.+.+
T Consensus 156 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 156 HGLIFMETSAKTAC-NVEEAFINTAKEIYR 184 (191)
T ss_dssp HTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.86 E-value=1.9e-21 Score=138.36 Aligned_cols=106 Identities=24% Similarity=0.259 Sum_probs=92.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus 62 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (170)
T 1z08_A 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAES 140 (170)
T ss_dssp CCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 7898873 88889999999999999999999999999999987765 35799999999999988788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|++.+.+
T Consensus 141 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 141 VGAKHYHTSAKQNK-GIEELFLDLCKRMIE 169 (170)
T ss_dssp TTCEEEEEBTTTTB-SHHHHHHHHHHHHHC
T ss_pred cCCeEEEecCCCCC-CHHHHHHHHHHHHhh
Confidence 99999999999999 999999999998865
No 23
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.86 E-value=2.2e-21 Score=141.58 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=96.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~ 76 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+ ..|+..+.... .++|++||+||+|+.+. +.+..+++..+
T Consensus 78 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (194)
T 3reg_A 78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDL 155 (194)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHH
T ss_pred CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHHHHHHH
Confidence 7899874 889999999999999999999999997 67999888765 67999999999999753 67888999999
Q ss_pred hhhcCCe-EEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 77 AVKYNCT-FHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 77 ~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+..+++. |++|||++|. ||+++|++|++.+.+..
T Consensus 156 ~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 156 CQKLGCVAYIEASSVAKI-GLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHTCSCEEECBTTTTB-SHHHHHHHHHHHHHCSC
T ss_pred HHhcCCCEEEEeecCCCC-CHHHHHHHHHHHHHhcC
Confidence 9999988 9999999999 99999999999988744
No 24
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.4e-21 Score=144.32 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 160 (201)
T 2ew1_A 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEA 160 (201)
T ss_dssp ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 7899874 78899999999999999999999999999999998765 36799999999999987788888999999998
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.|++|||++|. ||+++|.+|++.+.+
T Consensus 161 ~~~~~~~~Sa~~g~-gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 161 QDMYYLETSAKESD-NVEKLFLDLACRLIS 189 (201)
T ss_dssp HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 25
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=2.8e-21 Score=138.47 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=96.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus 71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (179)
T 1z0f_A 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 149 (179)
T ss_dssp CTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999988765 36799999999999987788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. ||+++|++|++.+.+
T Consensus 150 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 150 NGLLFLEASAKTGE-NVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHHHHHHC-
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence 99999999999999 999999999988754
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.86 E-value=2.2e-21 Score=137.81 Aligned_cols=106 Identities=26% Similarity=0.279 Sum_probs=95.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..+++..++..
T Consensus 62 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (170)
T 1r2q_A 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADD 140 (170)
T ss_dssp ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHH
Confidence 7898873 88899999999999999999999999999999988765 36899999999999987778888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. |++++|++|++.+.+
T Consensus 141 ~~~~~~~~Sa~~g~-gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 141 NSLLFMETSAKTSM-NVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHHHHTSCC
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence 99999999999999 999999999986643
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.9e-21 Score=138.13 Aligned_cols=106 Identities=27% Similarity=0.338 Sum_probs=92.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 67 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 145 (180)
T 2g6b_A 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKE 145 (180)
T ss_dssp CCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHH
Confidence 7899874 78899999999999999999999999999999998865 36799999999999988788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. ||+++|++|.+.+.+
T Consensus 146 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 146 YGLPFMETSAKTGL-NVDLAFTAIAKELKR 174 (180)
T ss_dssp HTCCEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998876
No 28
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=140.05 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=98.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 72 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (196)
T 3tkl_A 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 150 (196)
T ss_dssp ECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 7898873 88999999999999999999999999999999998876 36799999999999988888888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|++|++.+.+
T Consensus 151 ~~~~~~~~Sa~~g~-gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 151 LGIPFLETSAKNAT-NVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTCCEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998876
No 29
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.2e-21 Score=139.12 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=94.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+. .|+..+.... +++|++||+||+|+.+. +
T Consensus 73 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (194)
T 2atx_A 73 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEK 150 (194)
T ss_dssp CCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred CCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCc
Confidence 8999884 8889999999999999999999999997 7999998875 57999999999999753 4
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+..+++..++..+++ .|++|||++|. ||+++|++|++.++.
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 151 PICVEQGQKLAKEIGACCYVECSALTQK-GLKTVFDEAIIAILT 193 (194)
T ss_dssp CCCHHHHHHHHHHHTCSCEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHcCCcEEEEeeCCCCC-CHHHHHHHHHHHHhc
Confidence 6888899999998887 89999999999 999999999998764
No 30
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=3.8e-21 Score=138.28 Aligned_cols=106 Identities=24% Similarity=0.231 Sum_probs=96.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..+++..++..
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 146 (181)
T 2efe_B 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQE 146 (181)
T ss_dssp CCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHH
Confidence 7898873 88899999999999999999999999999999998875 36899999999999987788888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|++.+.+
T Consensus 147 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 147 NGLFFMETSAKTAT-NVKEIFYEIARRLPR 175 (181)
T ss_dssp TTCEEEECCSSSCT-THHHHHHHHHHTCC-
T ss_pred cCCEEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999987755
No 31
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=5.2e-21 Score=139.11 Aligned_cols=106 Identities=28% Similarity=0.331 Sum_probs=97.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 78 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (189)
T 2gf9_A 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADD 156 (189)
T ss_dssp CCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence 7899873 88999999999999999999999999999999988765 35799999999999987788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. ||+++|++|++.+.+
T Consensus 157 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 157 LGFEFFEASAKENI-NVKQVFERLVDVICE 185 (189)
T ss_dssp HTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998865
No 32
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=140.13 Aligned_cols=107 Identities=27% Similarity=0.391 Sum_probs=98.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..
T Consensus 69 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (206)
T 2bov_A 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148 (206)
T ss_dssp CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH
Confidence 7899884 88899999999999999999999999999999998876445899999999999988778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. ||+++|++|++.+.+
T Consensus 149 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 149 WNVNYVETSAKTRA-NVDKVFFDLMREIRA 177 (206)
T ss_dssp HTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred hCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998876
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=137.93 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=97.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+.+.+..+++..++..
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (181)
T 3tw8_B 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ 142 (181)
T ss_dssp ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH
Confidence 7888773 88899999999999999999999999999999998865 6899999999999988888888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|.+.+.+
T Consensus 143 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 143 MGIQLFETSAKENV-NVEEMFNCITELVLR 171 (181)
T ss_dssp HTCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998876
No 34
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=5.1e-21 Score=138.00 Aligned_cols=107 Identities=27% Similarity=0.391 Sum_probs=98.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..
T Consensus 73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 152 (187)
T 2a9k_A 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152 (187)
T ss_dssp CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH
Confidence 7899874 88899999999999999999999999999999998887445899999999999987778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||+++. ||+++|++|++.+.+
T Consensus 153 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 153 WNVNYVETSAKTRA-NVDKVFFDLMREIRA 181 (187)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998865
No 35
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.2e-21 Score=142.84 Aligned_cols=106 Identities=28% Similarity=0.356 Sum_probs=96.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 157 (191)
T 3dz8_A 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 157 (191)
T ss_dssp HHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 5676653 78899999999999999999999999999999998865 46899999999999988888899999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|++|++.+.+
T Consensus 158 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 LGFDFFEASAKENI-SVRQAFERLVDAICD 186 (191)
T ss_dssp HTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 36
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=7.2e-21 Score=140.10 Aligned_cols=107 Identities=27% Similarity=0.329 Sum_probs=98.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (206)
T 2bcg_Y 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA 142 (206)
T ss_dssp CTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 8999874 88999999999999999999999999999999998765 36799999999999988788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.++.++++||++|. ||+++|.+|.+.+.+.
T Consensus 143 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 143 NKMPFLETSALDST-NVEDAFLTMARQIKES 172 (206)
T ss_dssp TTCCEEECCTTTCT-THHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999998764
No 37
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=4.3e-21 Score=135.74 Aligned_cols=107 Identities=30% Similarity=0.466 Sum_probs=97.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+++..+++..++..
T Consensus 58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (167)
T 1kao_A 58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137 (167)
T ss_dssp CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH
Confidence 7899884 88899999999999999999999999999999988776446899999999999987788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. |++++|++|++.+.+
T Consensus 138 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 138 WGCPFMETSAKSKT-MVDELFAEIVRQMNY 166 (167)
T ss_dssp HTSCEEEECTTCHH-HHHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCCc-CHHHHHHHHHHHHhh
Confidence 99999999999999 999999999987753
No 38
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.4e-21 Score=143.28 Aligned_cols=109 Identities=28% Similarity=0.342 Sum_probs=95.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 69 t~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 147 (223)
T 3cpj_B 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE 147 (223)
T ss_dssp CTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 8999884 88999999999999999999999999999999998765 35799999999999987788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
.++.|+++||++|. ||+++|++|++.+.+...
T Consensus 148 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 148 NQLLFTETSALNSE-NVDKAFEELINTIYQKVS 179 (223)
T ss_dssp TTCEEEECCCC-CC-CHHHHHHHHHHHHTTCC-
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHHHhh
Confidence 99999999999999 999999999999987443
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=6.2e-21 Score=135.60 Aligned_cols=106 Identities=24% Similarity=0.279 Sum_probs=96.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...|++++|++|+|||++++.+|+.+..|+..+.... .+.+|+++|+||+|+.+.+++..+++..++..
T Consensus 62 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~ 140 (170)
T 1z0j_A 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADS 140 (170)
T ss_dssp ECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHHHHHHH
Confidence 7898873 78899999999999999999999999999999998864 46899999999999988788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. |++++|++|.+.+.+
T Consensus 141 ~~~~~~~~Sa~~~~-~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 141 IHAIFVETSAKNAI-NINELFIEISRRIPS 169 (170)
T ss_dssp TTCEEEECBTTTTB-SHHHHHHHHHHHCCC
T ss_pred cCCEEEEEeCCCCc-CHHHHHHHHHHHHhc
Confidence 99999999999999 999999999987643
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3e-21 Score=140.88 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=96.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus 79 t~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~ 157 (192)
T 2fg5_A 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157 (192)
T ss_dssp ECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred CCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 7898873 88899999999999999999999999999999998765 35799999999999987778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++|||++|. ||+++|++|.+.+.+
T Consensus 158 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 158 IGAIVVETSAKNAI-NIEELFQGISRQIPP 186 (192)
T ss_dssp TTCEEEECBTTTTB-SHHHHHHHHHHTCC-
T ss_pred cCCEEEEEeCCCCc-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999987755
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=4.9e-21 Score=138.41 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=96.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+...+.+..+++..++..
T Consensus 66 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 144 (186)
T 2bme_A 66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQE 144 (186)
T ss_dssp ECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 7898874 78899999999999999999999999999999888765 36799999999999987788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++|||++|. ||+++|++|++.+.+
T Consensus 145 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 145 NELMFLETSALTGE-NVEEAFVQCARKILN 173 (186)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCEEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 42
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=7.2e-21 Score=139.69 Aligned_cols=106 Identities=30% Similarity=0.374 Sum_probs=97.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (203)
T 1zbd_A 64 TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH 142 (203)
T ss_dssp ECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH
T ss_pred CCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999988765 45799999999999988788888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|++|++.+.+
T Consensus 143 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 143 LGFEFFEASAKDNI-NVKQTFERLVDVICE 171 (203)
T ss_dssp HTCEEEECBTTTTB-SSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999988865
No 43
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.3e-21 Score=138.34 Aligned_cols=109 Identities=28% Similarity=0.326 Sum_probs=97.3
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .++..|++++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+. .+.+..+++..++..
T Consensus 71 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~ 149 (195)
T 1x3s_A 71 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARK 149 (195)
T ss_dssp ECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHH
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHH
Confidence 789887 38899999999999999999999999999999999876544679999999999995 466778889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
.++.++++||+++. ||+++|++|.+.+.+...
T Consensus 150 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 150 HSMLFIEASAKTCD-GVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHHHHHHHTSGG
T ss_pred cCCEEEEecCCCCC-CHHHHHHHHHHHHHhhhh
Confidence 99999999999999 999999999999987543
No 44
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=139.64 Aligned_cols=106 Identities=26% Similarity=0.344 Sum_probs=95.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 82 t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 160 (192)
T 2il1_A 82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQ 160 (192)
T ss_dssp ECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 7898874 78899999999999999999999999999999888765 35799999999999988788888888899887
Q ss_pred c-CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 Y-NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
. ++.+++|||++|. ||+++|++|++.+.+
T Consensus 161 ~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 161 ITGMRFCEASAKDNF-NVDEIFLKLVDDILK 190 (192)
T ss_dssp STTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 5 7899999999999 999999999988765
No 45
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=9.1e-21 Score=137.41 Aligned_cols=107 Identities=32% Similarity=0.369 Sum_probs=97.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus 77 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156 (195)
T ss_dssp ECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 7888874 78899999999999999999999999999999998876446899999999999987778888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|.+.+.+
T Consensus 157 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 157 YGIPYFETSAANGT-NISHAIEMLLDLIMK 185 (195)
T ss_dssp HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998865
No 46
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.85 E-value=6.9e-21 Score=138.50 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=91.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLI------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~ 73 (173)
|+|+++. ++..|++++|++|+|||++ +.++|+.+..|+.++... ..++|++||+||+|+.+ .+..+++
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~--~~~~piilv~NK~Dl~~--~~~~~~~ 156 (198)
T 3t1o_A 81 VPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT--LDDVPIVIQVNKRDLPD--ALPVEMV 156 (198)
T ss_dssp CCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC--TTSSCEEEEEECTTSTT--CCCHHHH
T ss_pred CCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc--cCCCCEEEEEEchhccc--ccCHHHH
Confidence 8999884 8899999999999999999 667888888999888543 37899999999999975 3778899
Q ss_pred HHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 74 RSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 74 ~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++...++ .+++|||++|. ||+++|++|++.+.+
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGK-GVFETLKEVSRLVLA 192 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTB-THHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCc-CHHHHHHHHHHHHHH
Confidence 999999998 99999999999 999999999998876
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=6.1e-21 Score=135.48 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=94.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC---ccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL---RQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---~~v~~~~~~~~ 76 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+... +.+..+++..+
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~ 137 (170)
T 1ek0_A 59 TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKL 137 (170)
T ss_dssp ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH
T ss_pred CCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHH
Confidence 7898873 88899999999999999999999999999999988765 367999999999999765 67888889999
Q ss_pred hhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+...++.++++||++|. |++++|++|.+.+.
T Consensus 138 ~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 138 AEEKGLLFFETSAKTGE-NVNDVFLGIGEKIP 168 (170)
T ss_dssp HHHHTCEEEECCTTTCT-THHHHHHHHHTTSC
T ss_pred HHHcCCEEEEEeCCCCC-CHHHHHHHHHHHHh
Confidence 99999999999999999 99999999987654
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=7.1e-21 Score=135.05 Aligned_cols=105 Identities=24% Similarity=0.332 Sum_probs=96.5
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .++..|++++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+.+.+..+++..++..
T Consensus 61 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 138 (168)
T 1z2a_A 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR 138 (168)
T ss_dssp CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence 789887 388899999999999999999999999999999998876 6799999999999987778888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|.+.+.+
T Consensus 139 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 139 LKLRFYRTSVKEDL-NVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HTCEEEECBTTTTB-SSHHHHHHHHHHHHC
T ss_pred cCCeEEEEecCCCC-CHHHHHHHHHHHHhh
Confidence 99999999999999 999999999988765
No 49
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=6.6e-21 Score=138.09 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=93.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+ ..|+..+.... +++|++|||||+|+.+. +
T Consensus 62 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (184)
T 1m7b_A 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139 (184)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred CCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence 7899874 888999999999999999999999999 68999988765 67999999999999742 5
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEccc-CCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVA-DNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak-~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++..++..++ +.|++|||+ ++. ||+++|+.|++.++.
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 140 PVSYDQGANMAKQIGAATYIECSALQSEN-SVRDIFHVATLACVN 183 (184)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECBTTTBHH-HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCcEEEEeeecCCCc-CHHHHHHHHHHHHhc
Confidence 688889999998887 789999999 688 999999999988764
No 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=140.59 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=96.5
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+...+.+..+++..++..
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 159 (200)
T 2o52_A 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE 159 (200)
T ss_dssp CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHH
Confidence 788876 378899999999999999999999999999999988765 36799999999999987788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++|||++|. ||+++|.+|++.+.+
T Consensus 160 ~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 160 NELMFLETSALTGE-NVEEAFLKCARTILN 188 (200)
T ss_dssp TTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=139.28 Aligned_cols=106 Identities=27% Similarity=0.370 Sum_probs=93.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC------CCccCCHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE------HLRQVDESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~------~~~~v~~~~~ 73 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+. ..+.+..+++
T Consensus 84 t~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~ 162 (199)
T 2p5s_A 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162 (199)
T ss_dssp CTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred CCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHH
Confidence 7899884 88899999999999999999999999999999888764 3579999999999996 3567888889
Q ss_pred HHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 74 ~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++...++.|++|||++|. ||+++|.+|++.+.+
T Consensus 163 ~~~~~~~~~~~~~~SA~~g~-gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 163 EKLAMTYGALFCETSAKDGS-NIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHTCEEEECCTTTCT-THHHHHHHHHHHHTC
T ss_pred HHHHHHcCCeEEEeeCCCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999999999 999999999998764
No 52
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.85 E-value=1.9e-20 Score=138.94 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=96.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|+.++|++|+|||+++..+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (218)
T 4djt_A 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKG 146 (218)
T ss_dssp ECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTT
T ss_pred cCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999998876 35699999999999988778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.++.+++|||++|. ||+++|++|++.+.+....
T Consensus 147 ~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 147 KNYEYFEISAKTAH-NFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp CCCEEEEEBTTTTB-TTTHHHHHHHHHHHCCTTC
T ss_pred cCCcEEEEecCCCC-CHHHHHHHHHHHHhccccc
Confidence 99999999999999 9999999999999875443
No 53
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=137.98 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=94.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH------------LR 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~ 66 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+. .|+..+.... .++|++||+||+|+.. .+
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 152 (201)
T 2q3h_A 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEK 152 (201)
T ss_dssp CCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccc
Confidence 8999884 8889999999999999999999999997 7999998875 5899999999999975 35
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+..+++..++..+++ .|++|||++|. ||+++|++|++.+.+
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 153 PVPEEAAKLLAEEIKAASYIECSALTQK-NLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCcEEEEEecCCCC-CHHHHHHHHHHHHhc
Confidence 6788889999998887 89999999999 999999999998875
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=137.18 Aligned_cols=106 Identities=28% Similarity=0.346 Sum_probs=96.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+...+.+..+++..++..
T Consensus 81 t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 159 (193)
T 2oil_A 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAEN 159 (193)
T ss_dssp ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHH
Confidence 7899874 88999999999999999999999999999999988764 36799999999999987778888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++|||++|. ||+++|.+|++.+.+
T Consensus 160 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 160 NGLLFLETSALDST-NVELAFETVLKEIFA 188 (193)
T ss_dssp TTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998865
No 55
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=7.2e-21 Score=138.35 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=93.3
Q ss_pred CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|+++ .++..|++++|++|+|||++++.+|+.+..|+.++.......++|++||+||+|+.+.+++..+++..++.
T Consensus 76 t~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 155 (189)
T 1z06_A 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 155 (189)
T ss_dssp CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH
Confidence 788876 37889999999999999999999999999999999887544689999999999998778888899999999
Q ss_pred hcCCeEEEEcccCC---cccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSVADN---SPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sak~g---~~~v~~lf~~l~~~i~~ 109 (173)
..++.++++||+++ . ||+++|.+|++.+.+
T Consensus 156 ~~~~~~~~~Sa~~~~~~~-~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 156 THSMPLFETSAKNPNDND-HVEAIFMTLAHKLKS 188 (189)
T ss_dssp HTTCCEEECCSSSGGGGS-CHHHHHHHHC-----
T ss_pred HcCCEEEEEeCCcCCccc-CHHHHHHHHHHHHhh
Confidence 99999999999999 8 999999999887653
No 56
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.85 E-value=4.8e-21 Score=141.67 Aligned_cols=107 Identities=23% Similarity=0.344 Sum_probs=92.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--------CCH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--------VDE 70 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--------v~~ 70 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+. .|+..+.... +++|++||+||+|+.+.+. +..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~ 141 (212)
T 2j0v_A 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITS 141 (212)
T ss_dssp CCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCH
T ss_pred CCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCH
Confidence 8999884 8889999999999999999999999997 7999998875 5799999999999976543 478
Q ss_pred HHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 71 SLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 71 ~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+++..++..+++ .|++|||++|. ||+++|++|++.+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 142 TQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHHHHHHTCSEEEECCTTTCT-THHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCceEEEccCCCCC-CHHHHHHHHHHHHhhhh
Confidence 888899998885 89999999999 99999999999998743
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=1.4e-20 Score=133.79 Aligned_cols=105 Identities=24% Similarity=0.312 Sum_probs=94.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+ ..+.+..+++..++..
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~ 136 (170)
T 1g16_A 59 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKE 136 (170)
T ss_dssp CTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHH
T ss_pred CCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHH
Confidence 7898873 88899999999999999999999999999999988865 357999999999999 4466788888999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|.+|.+.+.+
T Consensus 137 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFIESSAKNDD-NVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998876
No 58
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.84 E-value=5.5e-21 Score=137.57 Aligned_cols=105 Identities=23% Similarity=0.288 Sum_probs=92.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----------C
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----------V 68 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v 68 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.+. +
T Consensus 63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v 140 (182)
T 3bwd_D 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPI 140 (182)
T ss_dssp CCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCC
T ss_pred CCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCC
Confidence 8999884 8889999999999999999999999997 6999988875 5799999999999965543 4
Q ss_pred CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..+++..++..+++ .|++|||++|. ||+++|++|++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 141 TTVQGEELKKLIGAPAYIECSSKSQE-NVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCT-THHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCC-CHHHHHHHHHHHHhc
Confidence 77888899988886 89999999999 999999999988764
No 59
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=1.1e-20 Score=136.19 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=95.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+. +
T Consensus 60 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (186)
T 1mh1_A 60 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 137 (186)
T ss_dssp CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccc
Confidence 8999874 8888999999999999999999999997 6999988765 47999999999998653 5
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.+..+++..++...++ .+++|||++|. ||+++|++|++.+.+.+
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 138 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHSCCC
T ss_pred cCCHHHHHHHHHhcCCcEEEEecCCCcc-CHHHHHHHHHHHHhccc
Confidence 6788888999998886 89999999999 99999999999987644
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.6e-20 Score=137.38 Aligned_cols=108 Identities=30% Similarity=0.485 Sum_probs=97.9
Q ss_pred CCCCCC-ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792 2 TIGLTE-GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80 (173)
Q Consensus 2 TaG~e~-~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~ 80 (173)
|+|+++ .++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..+
T Consensus 83 t~G~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~ 162 (196)
T 2atv_A 83 TAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL 162 (196)
T ss_dssp CCCCCCCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh
Confidence 789887 5888999999999999999999999999999999988764568999999999999887888899999999999
Q ss_pred CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 81 NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 81 ~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++.|++|||++|..||+++|++|++.+.+
T Consensus 163 ~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 163 ACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 99999999999954899999999998865
No 61
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=3.2e-20 Score=134.15 Aligned_cols=106 Identities=26% Similarity=0.403 Sum_probs=95.0
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ +.+..+++..++..
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~ 137 (189)
T 4dsu_A 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARS 137 (189)
T ss_dssp CCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHH
Confidence 799988 389999999999999999999999999999999998876557899999999999974 66778889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. ||+++|++|++.+.+
T Consensus 138 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 138 YGIPFIETSAKTRQ-GVDDAFYTLVREIRK 166 (189)
T ss_dssp HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 62
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.84 E-value=8.2e-21 Score=139.38 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=86.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCC-CccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEH-LRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~-~~~v~~~~~~~~ 76 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.+ .+.++.+++..+
T Consensus 80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~ 159 (208)
T 2yc2_C 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDW 159 (208)
T ss_dssp TTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHH
Confidence 7898773 888999999999999999999999999999999988762 15799999999999987 778888999999
Q ss_pred hhhcCCeEEEEcccC-CcccHHHHHHHHHHHHhc
Q psy2792 77 AVKYNCTFHEVSVAD-NSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 ~~~~~~~~~e~Sak~-g~~~v~~lf~~l~~~i~~ 109 (173)
+..+++.+++|||++ |. ||+++|++|++.+.+
T Consensus 160 ~~~~~~~~~~~Sa~~~~~-gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 160 ATTNTLDFFDVSANPPGK-DADAPFLSIATTFYR 192 (208)
T ss_dssp HHHTTCEEEECCC--------CHHHHHHHHHHHH
T ss_pred HHHcCCEEEEeccCCCCc-CHHHHHHHHHHHHHH
Confidence 999999999999999 99 999999999998875
No 63
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=1.1e-20 Score=135.46 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=95.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|+.++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus 70 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (179)
T 2y8e_A 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE 148 (179)
T ss_dssp ECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHH
Confidence 7898873 78899999999999999999999999999999988765 36799999999999988788888899999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. |++++|++|.+.+.+
T Consensus 149 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 149 LNVMFIETSAKAGY-NVKQLFRRVAAALPG 177 (179)
T ss_dssp HTCEEEEEBTTTTB-SHHHHHHHHHHTCC-
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence 99999999999999 999999999886643
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=1.4e-20 Score=139.28 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=92.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~ 66 (173)
|+|++++ ++..|++++|++|+|||++++++|+.+ ..|+..+.... .++|++|||||+|+.+ .+
T Consensus 83 t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 160 (205)
T 1gwn_A 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQT 160 (205)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred CCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccC
Confidence 7899874 888999999999999999999999999 68999998765 6799999999999974 25
Q ss_pred cCCHHHHHHHhhhcC-CeEEEEccc-CCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYN-CTFHEVSVA-DNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~-~~~~e~Sak-~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++..++..++ +.|++|||+ ++. ||+++|+.|++.++.
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~-gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 161 PVSYDQGANMAKQIGAATYIECSALQSEN-SVRDIFHVATLACVN 204 (205)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCHH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEeeeccCCc-CHHHHHHHHHHHHhh
Confidence 688888999998887 789999999 688 999999999988764
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.84 E-value=3.9e-20 Score=135.98 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=93.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+ ..|+..+.... +++|+++|+||+|+... +
T Consensus 80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (201)
T 2gco_A 80 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQE 157 (201)
T ss_dssp CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCC
T ss_pred CCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccC
Confidence 8999873 888899999999999999999999999 67998888765 57999999999999764 4
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+..+++..++...++ .+++|||++|. ||+++|++|++.+++
T Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 158 PVRSEEGRDMANRISAFGYLECSAKTKE-GVREVFEMATRAGLQ 200 (201)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHhCCCcEEEEeeCCCCC-CHHHHHHHHHHHHhc
Confidence 5788889999998887 89999999999 999999999988764
No 66
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=139.67 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+... +
T Consensus 89 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 166 (214)
T 2j1l_A 89 TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLE 166 (214)
T ss_dssp C---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCC
T ss_pred CCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccC
Confidence 7899874 8889999999999999999999999996 6999988765 67999999999999754 3
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.++.+++..++...++ .|++|||++|. ||+++|++|++.+.+.
T Consensus 167 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 167 PVTYHRGQEMARSVGAVAYLECSARLHD-NVHAVFQEAAEVALSS 210 (214)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECBTTTTB-SHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHhcCCCEEEEecCCCCC-CHHHHHHHHHHHHHHh
Confidence 6788888999999997 89999999999 9999999999988763
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=9.1e-20 Score=128.61 Aligned_cols=106 Identities=25% Similarity=0.381 Sum_probs=95.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|+.++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.. +.+..+++..++..
T Consensus 58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~ 136 (166)
T 2ce2_X 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARS 136 (166)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHH
T ss_pred CCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHH
Confidence 7899873 88889999999999999999999999999999998876445899999999999976 56778888999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.++++||++|. |++++|++|.+.+.+
T Consensus 137 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 137 YGIPYIETSAKTRQ-GVEDAFYTLVREIRQ 165 (166)
T ss_dssp HTCCEEEECTTTCT-THHHHHHHHHHHHHT
T ss_pred cCCeEEEecCCCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999 999999999988764
No 68
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.84 E-value=7.6e-21 Score=141.06 Aligned_cols=107 Identities=28% Similarity=0.337 Sum_probs=95.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..
T Consensus 91 t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170 (217)
T ss_dssp EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 6787763 78899999999999999999999999999998887654336799999999999987778888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|++|++.+.+
T Consensus 171 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 YGIPYFETSAATGQ-NVEKAVETLLDLIMK 199 (217)
T ss_dssp TTCCEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998876
No 69
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=6.4e-20 Score=135.40 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=94.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+ ..|+..+.... +++|+++|+||+|+... +
T Consensus 80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (207)
T 2fv8_A 80 TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQE 157 (207)
T ss_dssp CTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccC
Confidence 8999874 888999999999999999999999999 67998888765 67999999999999754 4
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.+..+++..++...+. .+++|||++|. ||+++|++|++.+.+.
T Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 158 PVRTDDGRAMAVRIQAYDYLECSAKTKE-GVREVFETATRAALQK 201 (207)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeCCCCC-CHHHHHHHHHHHHHHH
Confidence 5778888899988887 89999999999 9999999999998864
No 70
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=8.2e-20 Score=130.83 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=94.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+. .+.+..+++..+
T Consensus 63 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~ 141 (177)
T 1wms_A 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAW 141 (177)
T ss_dssp CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHH
T ss_pred CCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHH
Confidence 7898874 788999999999999999999999999999999887652 1578999999999997 567788888888
Q ss_pred hh-hcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 77 AV-KYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 77 ~~-~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+. ..++.++++||++|. ||+++|++|++.+.+.
T Consensus 142 ~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 142 CRDNGDYPYFETSAKDAT-NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHTTCCCEEECCTTTCT-THHHHHHHHHHHHHTC
T ss_pred HHhcCCceEEEEeCCCCC-CHHHHHHHHHHHHHhh
Confidence 88 567889999999999 9999999999988763
No 71
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.83 E-value=2.4e-20 Score=137.03 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=83.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||+++. ++..|++++|++|+|||++++++|+.+..|+.++.......++|+++|+||+|+.+ .++.+++..++..
T Consensus 76 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 76 LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGL 153 (198)
T ss_dssp ECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTC
T ss_pred CCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCc
Confidence 7999873 88899999999999999999999999999999987653336799999999999974 5667777776542
Q ss_pred -----------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 -----------------YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 -----------------~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++.+++|||++|. ||+++|++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~ 196 (198)
T 1f6b_A 154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQ-GYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCCSSCCCTTTCCSCCEEEEECBTTTTB-SHHHHHHHHHTT
T ss_pred ccccccccccccccccCceEEEEEEECCCCC-CHHHHHHHHHHh
Confidence 34679999999999 999999999864
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=7.7e-20 Score=131.25 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=86.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCC-CCccCCHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLE-HLRQVDESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~-~~~~v~~~~~~~ 75 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+. ..+.+..+++..
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~ 144 (182)
T 1ky3_A 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE 144 (182)
T ss_dssp CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH
T ss_pred CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH
Confidence 7898873 788899999999999999999999999999999887652 2578999999999995 345677888888
Q ss_pred Hhh-hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 TAV-KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~-~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++. ..++.+++|||++|. ||+++|++|++.+.+
T Consensus 145 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 145 LAKSLGDIPLFLTSAKNAI-NVDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHTTSCCEEEEBTTTTB-SHHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence 887 556889999999999 999999999998865
No 73
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=1e-20 Score=133.99 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS---- 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~---- 75 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.. ..++...
T Consensus 51 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~ 128 (164)
T 1r8s_A 51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGL 128 (164)
T ss_dssp CCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTG
T ss_pred cCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCc
Confidence 7999874 7888999999999999999999999999999888764333679999999999996532 2222222
Q ss_pred -HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+...++.+++|||++|. ||+++|++|++.+.+
T Consensus 129 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 129 HSLRHRNWYIQATCATSGD-GLYEGLDWLSNQLRN 162 (164)
T ss_dssp GGCSSCCEEEEECBTTTTB-THHHHHHHHHHHC--
T ss_pred ccccCccEEEEEcccCCCc-CHHHHHHHHHHHHhh
Confidence 122345679999999999 999999999987754
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=8.4e-20 Score=132.56 Aligned_cols=106 Identities=26% Similarity=0.389 Sum_probs=88.6
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .++..|++++|++|+|||+++..+|+.+..|+..+.......++|+++|+||+|+.. +.+..+++..++..
T Consensus 76 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~ 154 (190)
T 3con_A 76 TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKS 154 (190)
T ss_dssp CCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHH
Confidence 789886 388899999999999999999999999999999998876445799999999999976 66778889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. |++++|.+|++.+.+
T Consensus 155 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 155 YGIPFIETSAKTRQ-GVEDAFYTLVREIRQ 183 (190)
T ss_dssp HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998875
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.2e-20 Score=131.35 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=93.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|+++. ++..|+.++|++|+|||++++.+|+.+..|+..+.+... ..++|+++|+||+|+.+.+.+..+++..++.
T Consensus 58 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~ 137 (172)
T 2erx_A 58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR 137 (172)
T ss_dssp CCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH
Confidence 7999874 888999999999999999999999999999888877642 2479999999999998778888888888999
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.+++.++++||++|. ||+++|++|.+.+.
T Consensus 138 ~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 TWKCAFMETSAKLNH-NVKELFQELLNLEK 166 (172)
T ss_dssp HHTCEEEECBTTTTB-SHHHHHHHHHHTCC
T ss_pred HhCCeEEEecCCCCc-CHHHHHHHHHHHHh
Confidence 889999999999999 99999999997654
No 76
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.83 E-value=5.2e-20 Score=134.38 Aligned_cols=102 Identities=24% Similarity=0.238 Sum_probs=86.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+ .++.+++..++..
T Consensus 74 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~ 151 (190)
T 1m2o_B 74 LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGL 151 (190)
T ss_dssp CCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCC
Confidence 8999874 88899999999999999999999999999999887654336799999999999975 5666776665542
Q ss_pred ------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 80 ------------YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 80 ------------~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
.++.|++|||++|. ||+++|++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~ 189 (190)
T 1m2o_B 152 LNTTGSQRIEGQRPVEVFMCSVVMRN-GYLEAFQWLSQY 189 (190)
T ss_dssp SSCCC---CCSSCCEEEEECBTTTTB-SHHHHHHHHHTT
T ss_pred ccccccccccccceEEEEEeECCcCC-CHHHHHHHHHhh
Confidence 35679999999999 999999999753
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=1.6e-19 Score=131.61 Aligned_cols=103 Identities=24% Similarity=0.230 Sum_probs=92.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ++|+++|+||+| ...+.+..+++..++..
T Consensus 100 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~~~~~~~~ 175 (208)
T 3clv_A 100 TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILEVQKYAQD 175 (208)
T ss_dssp CTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHHHHHHHHH
Confidence 7898874 88899999999999999999999999999999998765 399999999999 55577888999999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||++|. ||+++|++|++.+.+
T Consensus 176 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 176 NNLLFIQTSAKTGT-NIKNIFYMLAEEIYK 204 (208)
T ss_dssp TTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999988765
No 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=7.1e-20 Score=135.09 Aligned_cols=105 Identities=24% Similarity=0.308 Sum_probs=94.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+ ..+.+..+++..++..
T Consensus 76 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~ 153 (213)
T 3cph_A 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKE 153 (213)
T ss_dssp CTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHH
Confidence 7898873 78899999999999999999999999999999988765 357999999999999 4567778888889998
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|.+|.+.+.+
T Consensus 154 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 154 LGIPFIESSAKNDD-NVNEIFFTLAKLIQE 182 (213)
T ss_dssp HTCCEEECBTTTTB-SSHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999988865
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.82 E-value=2.2e-21 Score=142.35 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=85.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus 89 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~ 167 (199)
T 3l0i_B 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 167 (199)
T ss_dssp CTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT
T ss_pred CCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHH
Confidence 7899874 78899999999999999999999999999999997765 35799999999999987777777778888999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++.+++|||++|. ||+++|++|++.+.+
T Consensus 168 ~~~~~~~vSA~~g~-gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 168 LGIPFLETSAKNAT-NVEQSFMTMAAEIKK 196 (199)
T ss_dssp TTCCBCCCCC---H-HHHHHHHHHTTTTTT
T ss_pred cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999877654
No 80
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=3.5e-20 Score=131.93 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=85.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-----
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR----- 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~----- 74 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+... .++..
T Consensus 58 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~ 135 (171)
T 1upt_A 58 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGL 135 (171)
T ss_dssp ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTG
T ss_pred CCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCc
Confidence 7899873 88899999999999999999999999999998887653236799999999999975432 22221
Q ss_pred HHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 75 ~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++...++.+++|||++|. ||+++|++|++.+.+
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 136 PALKDRKWQIFKTSATKGT-GLDEAMEWLVETLKS 169 (171)
T ss_dssp GGCTTSCEEEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred hhccCCceEEEECcCCCCc-CHHHHHHHHHHHHhh
Confidence 2233456789999999999 999999999998875
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.82 E-value=2.6e-20 Score=135.94 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=85.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-------CCCcEEEEEeCCCCCCCcc---CC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-------NNVPVMLLANKLDLEHLRQ---VD 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~piilv~NK~Dl~~~~~---v~ 69 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+...... .++|+|||+||+|+..... +.
T Consensus 70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 149 (199)
T 4bas_A 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV 149 (199)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHH
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHH
Confidence 7899874 8889999999999999999999999999999888765211 2799999999999976432 11
Q ss_pred HHHHHH-HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 70 ESLGRS-TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 70 ~~~~~~-~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...... ++...++.|++|||++|. ||+++|++|++.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 150 EILDLTTLMGDHPFVIFASNGLKGT-GVHEGFSWLQETASR 189 (199)
T ss_dssp HHHTHHHHHTTSCEEEEECBTTTTB-THHHHHHHHHHHHHH
T ss_pred HHhcchhhccCCeeEEEEeeCCCcc-CHHHHHHHHHHHHHH
Confidence 111111 125567889999999999 999999999998876
No 82
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=9.4e-20 Score=132.97 Aligned_cols=106 Identities=26% Similarity=0.378 Sum_probs=93.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
|+|+++. ++..|+.++|++|+|||++++.+|+.+..|+..+...... .++|++||+||+|+.. +.+..+++..++.
T Consensus 63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~ 141 (199)
T 2gf0_A 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQ 141 (199)
T ss_dssp CCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHH
T ss_pred CCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHH
Confidence 7899874 8889999999999999999999999999888877765421 4689999999999975 6677888888999
Q ss_pred hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++.++++||++|. ||+++|++|++.+.+
T Consensus 142 ~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 142 EWKCAFMETSAKMNY-NVKELFQELLTLETR 171 (199)
T ss_dssp HHTCEEEECBTTTTB-SHHHHHHHHHHHCSS
T ss_pred HhCCeEEEEecCCCC-CHHHHHHHHHHHHhh
Confidence 999999999999999 999999999987765
No 83
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.82 E-value=3.3e-20 Score=136.83 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=90.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR------------ 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------ 66 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+.+..
T Consensus 85 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 4gzl_A 85 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred CCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccc
Confidence 7899874 8888999999999999999999999997 7999988875 679999999999996543
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.+..+++..++...++ .+++|||++|. ||+++|++|++.+
T Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 163 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAV 203 (204)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHTT
T ss_pred cccHHHHHHHHHhcCCcEEEEeeCCCCC-CHHHHHHHHHHHh
Confidence 3778888899998885 59999999999 9999999998754
No 84
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.81 E-value=2.9e-20 Score=135.91 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=80.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS---- 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~---- 75 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+.. ..++...
T Consensus 80 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~ 157 (192)
T 2b6h_A 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGL 157 (192)
T ss_dssp CC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTG
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCc
Confidence 8999873 8889999999999999999999999999999888765434679999999999996532 2222222
Q ss_pred -HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++...++.+++|||++|. ||+++|++|++.+.+
T Consensus 158 ~~~~~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 158 QHLRSRTWYVQATCATQGT-GLYDGLDWLSHELSK 191 (192)
T ss_dssp GGCSSCCEEEEECBTTTTB-THHHHHHHHHHHTTT
T ss_pred ccccCCceEEEECcCCCcC-CHHHHHHHHHHHHhc
Confidence 222345679999999999 999999999987754
No 85
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=5.8e-20 Score=136.81 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=93.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+... . .+...++..
T Consensus 71 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~ 146 (221)
T 3gj0_A 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRK 146 (221)
T ss_dssp ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSS-C-GGGCCHHHH
T ss_pred CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccc-c-HHHHHHHHH
Confidence 7898873 88999999999999999999999999999999999876 6899999999999975433 2 255667788
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~ 113 (173)
.++.|++|||++|. ||+++|.+|++.+...+..
T Consensus 147 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 147 KNLQYYDISAKSNY-NFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp HTCEEEECBGGGTB-TTTHHHHHHHHHHHTCTTC
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHHHhCccc
Confidence 89999999999999 9999999999999875443
No 86
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.81 E-value=6.8e-20 Score=134.19 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=85.8
Q ss_pred CCCCCCc--cH---hhhcccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-------Ccc
Q psy2792 2 TIGLTEG--TL---TAMICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-------LRQ 67 (173)
Q Consensus 2 TaG~e~~--~~---~~y~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-------~~~ 67 (173)
|+|++++ +. ..||+++|++|+|||+++. ++++.+..|+.++.... .++|++|||||+|+.+ .+.
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~ 153 (196)
T 3llu_A 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHKIETQRD 153 (196)
T ss_dssp CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHHHHHHHH
T ss_pred CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhhhHHHhH
Confidence 7999883 44 7999999999999999997 77888888888876544 6899999999999754 345
Q ss_pred CCHHHHHHHhh----hcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 68 VDESLGRSTAV----KYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 68 v~~~~~~~~~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
+..+++..++. ..++.|++|||++ . ||+++|..|++.+
T Consensus 154 v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~-~v~~~f~~l~~~l 195 (196)
T 3llu_A 154 IHQRANDDLADAGLEKLHLSFYLTSIYD-H-SIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHTTCTTSCEEEEEECTTS-T-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhcCCcceEEEEech-h-hHHHHHHHHHHHh
Confidence 66666777887 6788999999999 9 9999999999865
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=130.69 Aligned_cols=108 Identities=11% Similarity=0.124 Sum_probs=84.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 77 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+ ....++.....
T Consensus 67 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~ 144 (187)
T 1zj6_A 67 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKL 144 (187)
T ss_dssp CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTG
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhCh
Confidence 8999874 88899999999999999999999999999999988753236799999999999974 23344444332
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
...++.+++|||++|. ||+++|++|++.+.....
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 145 TSIKDHQWHIQACCALTGE-GLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp GGCCSSCEEEEECBTTTTB-THHHHHHHHHHHHCC---
T ss_pred hhhcCCCcEEEEccCCCCc-CHHHHHHHHHHHHHHHhh
Confidence 2346789999999999 999999999998876443
No 88
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=2.2e-19 Score=131.82 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=92.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV---NNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+..|+..+...... .++|++||+||+|+. .+.+..+++..+
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~ 142 (207)
T 1vg8_A 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAW 142 (207)
T ss_dssp ECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHH
T ss_pred CCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHH
Confidence 7898873 7889999999999999999999999999999988776521 468999999999997 466777888888
Q ss_pred hh-hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 AV-KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 ~~-~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+. ..++.++++||++|. ||+++|++|++.+.+
T Consensus 143 ~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 143 CYSKNNIPYFETSAKEAI-NVEQAFQTIARNALK 175 (207)
T ss_dssp HHHTTSCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred HHhcCCceEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 87 667889999999999 999999999998876
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=5.8e-20 Score=133.03 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=83.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST--- 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~--- 76 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+... .++....
T Consensus 67 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~ 144 (181)
T 1fzq_A 67 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNL 144 (181)
T ss_dssp CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCc
Confidence 8999874 77899999999999999999999999999998876643236799999999999975432 2333222
Q ss_pred --hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+...++.+++|||++|. ||+++|++|++.+.+
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGE-GVQDGMNWVCKNVNA 178 (181)
T ss_dssp GGCCSSCEEEEECCTTTCT-THHHHHHHHHHTC--
T ss_pred hhccCCceEEEEccCCCCC-CHHHHHHHHHHHHHh
Confidence 12345679999999999 999999999987654
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=5.8e-20 Score=133.41 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=85.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS---- 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~---- 75 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+... .++...
T Consensus 73 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~ 150 (189)
T 2x77_A 73 LGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGV 150 (189)
T ss_dssp ECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTG
T ss_pred CCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhCh
Confidence 7999874 88889999999999999999999999999998887654346799999999999975422 222222
Q ss_pred -HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+...++.+++|||++|. ||+++|++|.+.+.+
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 151 SSIMNRTWTIVKSSSKTGD-GLVEGMDWLVERLRE 184 (189)
T ss_dssp GGCCSSCEEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred hhccCCceEEEEccCCCcc-CHHHHHHHHHHHHHh
Confidence 223345689999999999 999999999998865
No 91
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.80 E-value=3.5e-20 Score=145.81 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=84.9
Q ss_pred CCCCCCc-----cHhhhcccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-------cc
Q psy2792 2 TIGLTEG-----TLTAMICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL-------RQ 67 (173)
Q Consensus 2 TaG~e~~-----~~~~y~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-------~~ 67 (173)
|||||++ +++.||++|+++|+|||+++. ++++.+..|+.++.... +++|++|||||+||.+. ++
T Consensus 53 TAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~--~~ipillvgNK~DL~~~~~R~~~~R~ 130 (331)
T 3r7w_B 53 LPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN--PSINIEVLIHKVDGLSEDFKVDAQRD 130 (331)
T ss_dssp CCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCSSCSHHHHHHHHH
T ss_pred CCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC--CCCcEEEEEECcccCchhhhhhHHHH
Confidence 8999986 368999999999999999998 33344444455555543 68999999999999753 46
Q ss_pred CCHHHHHHHhhh----cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 68 VDESLGRSTAVK----YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 68 v~~~~~~~~~~~----~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
|..+++.++++. +++.||||||++ . ||.++|..|+..++.+
T Consensus 131 V~~~~~~~la~~~~~~~~i~f~eTSAkd-~-nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 131 IMQRTGEELLELGLDGVQVSFYLTSIFD-H-SIYEAFSRIVQKLIPE 175 (331)
T ss_dssp HHHHHHHTTSSSSCSCCCEEEECCCSSS-S-HHHHHHHHHHTTSSTT
T ss_pred hhHHHHHHHHhhcccccCceEEEeccCC-C-cHHHHHHHHHHHHHhh
Confidence 777888888886 678999999997 6 8999999999887753
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=126.93 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV--NNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+...... .++|++||+||+|+.+ .+..++...++
T Consensus 74 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~ 151 (190)
T 2h57_A 74 MSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLL 151 (190)
T ss_dssp ECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHh
Confidence 7899874 8889999999999999999999999999999988876432 5799999999999964 34455555554
Q ss_pred h-----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 V-----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ~-----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
. ..++.+++|||++|. ||+++|++|.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 152 CLENIKDKPWHICASDAIKGE-GLQEGVDWLQDQIQT 187 (190)
T ss_dssp TGGGCCSSCEEEEECBTTTTB-THHHHHHHHHHHC--
T ss_pred ChhhccCCceEEEEccCCCCc-CHHHHHHHHHHHHHH
Confidence 2 236789999999999 999999999987643
No 93
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=139.99 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=84.2
Q ss_pred CCCCCCc--cHhhhcc---------------------cCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEE
Q psy2792 2 TIGLTEG--TLTAMIC---------------------WADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLL 56 (173)
Q Consensus 2 TaG~e~~--~~~~y~~---------------------~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv 56 (173)
|||+++. ++..||+ +||++|+|||++++ .||+.+..|+.++.......++|++||
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 5677663 6667776 89999999999998 999999999999887622357999999
Q ss_pred EeCCCCCCCccCCHHHHHHHhhh-cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 57 ANKLDLEHLRQVDESLGRSTAVK-YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 57 ~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+||+|+.+.+.+ +++..++.. .++.|++|||++|. ||+++|++|++.+.
T Consensus 205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~-gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNV-NVDLAFSTLVQLID 254 (255)
T ss_dssp EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTB-SHHHHHHHHHHHHH
T ss_pred EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCC-CHHHHHHHHHHHhc
Confidence 999999765554 466777766 47899999999999 99999999998764
No 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=6e-19 Score=138.32 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=94.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~ 66 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+. +
T Consensus 210 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 287 (332)
T 2wkq_A 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 287 (332)
T ss_dssp ECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred CCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccc
Confidence 7899874 8889999999999999999999999997 6998888765 48999999999998643 5
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+..+++..++...++ .|++|||++|. ||+++|+.|++.++.
T Consensus 288 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 288 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAVLC 330 (332)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHcCCcEEEEecCCCCc-CHHHHHHHHHHHHhc
Confidence 6888899999999997 89999999999 999999999998875
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=8e-19 Score=126.73 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=82.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 77 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+. ...++.....
T Consensus 72 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~ 149 (181)
T 2h17_A 72 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKL 149 (181)
T ss_dssp ESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTG
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCc
Confidence 7899873 888999999999999999999999999999988876532367999999999999652 3344444332
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
...++.+++|||++|. ||+++|++|++.
T Consensus 150 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~ 180 (181)
T 2h17_A 150 TSIKDHQWHIQACCALTGE-GLCQGLEWMMSR 180 (181)
T ss_dssp GGCCSSCEEEEECBTTTTB-THHHHHHHHHTC
T ss_pred ccccCCceEEEEccCCCCc-CHHHHHHHHHhh
Confidence 2345689999999999 999999999753
No 96
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=1.4e-18 Score=125.64 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=86.5
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-- 77 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 77 (173)
|+|+++ .++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.. ..++.....
T Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~ 146 (186)
T 1ksh_A 69 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALEL 146 (186)
T ss_dssp ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTG
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhCh
Confidence 789877 48889999999999999999999999999999888765333679999999999997543 233333322
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
...++.+++|||++|. ||+++|++|.+.+.+.
T Consensus 147 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 147 DSIRSHHWRIQGCSAVTGE-DLLPGIDWLLDDISSR 181 (186)
T ss_dssp GGCCSSCEEEEECCTTTCT-THHHHHHHHHHHHHTC
T ss_pred hhccCCceEEEEeeCCCCC-CHHHHHHHHHHHHHhc
Confidence 2346789999999999 9999999999988764
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.78 E-value=1.4e-19 Score=131.65 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=83.0
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST--- 76 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~--- 76 (173)
|+|+++ .++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+... ...++....
T Consensus 74 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~ 151 (188)
T 1zd9_A 74 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNL 151 (188)
T ss_dssp ECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTG
T ss_pred CCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhCh
Confidence 788877 3888999999999999999999999999999988876532367999999999999753 223332221
Q ss_pred --hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+...++.+++|||++|. ||+++|++|++.+.+
T Consensus 152 ~~~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 152 SAIQDREICCYSISCKEKD-NIDITLQWLIQHSKS 185 (188)
T ss_dssp GGCCSSCEEEEECCTTTCT-THHHHHHHHHHTCC-
T ss_pred hhhccCCeeEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence 12345679999999999 999999999986644
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=3.9e-19 Score=128.02 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=82.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV- 78 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~- 78 (173)
|+|+++. ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+. ...++......
T Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~ 146 (183)
T 1moz_A 69 LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNL 146 (183)
T ss_dssp EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTT
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence 7898873 888999999999999999999999999999988877543467999999999999653 33444443332
Q ss_pred ----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 ----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++.+++|||++|. ||+++|++|.+.+.+
T Consensus 147 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 147 VELKDRSWSIVASSAIKGE-GITEGLDWLIDVIKE 180 (183)
T ss_dssp TTCCSSCEEEEEEBGGGTB-THHHHHHHHHHHHHH
T ss_pred ccccCCceEEEEccCCCCc-CHHHHHHHHHHHHHh
Confidence 234579999999999 999999999988764
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=2e-19 Score=130.38 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=87.7
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC---HHHHHH
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDK-ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD---ESLGRS 75 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~---~~~~~~ 75 (173)
|||+++ .+++.|++++|++++|||++++ .+|+.+..|+.++.... +++|++|||||+|+.+.+.+. .+.+..
T Consensus 63 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 140 (184)
T 2zej_A 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKE 140 (184)
T ss_dssp ECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHH
Confidence 788877 3788999999999999999997 58999999999987764 579999999999997654432 234566
Q ss_pred HhhhcCCe----EEEEcccCC-cccHHHHHHHHHHHHhc
Q psy2792 76 TAVKYNCT----FHEVSVADN-SPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~~~~~~----~~e~Sak~g-~~~v~~lf~~l~~~i~~ 109 (173)
++..+++. |+++||+++ . +++++|..|.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~Sa~~~~~-~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 141 LLNKRGFPAIRDYHFVNATEESD-ALAKLRKTIINESLN 178 (184)
T ss_dssp TTTCTTSCEEEEEEECCTTSCCH-HHHHHHHHHHHHHHC
T ss_pred HHHhcCCcchhheEEEecccCch-hHHHHHHHHHHHHhc
Confidence 77777776 999999999 6 899999999988876
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.63 E-value=2.8e-20 Score=136.86 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=89.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR------------ 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------ 66 (173)
|+|+++. ++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+..
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 3th5_A 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
Confidence 7899874 8888999999999999999999999987 7988887765 479999999999997543
Q ss_pred cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.+..+++..++...++ .+++|||++|. ||+++|++|++.+
T Consensus 163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~-gi~~l~~~l~~~i 203 (204)
T 3th5_A 163 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAV 203 (204)
Confidence 5566777888888887 89999999999 9999999998765
No 101
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.76 E-value=3.8e-19 Score=141.76 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=90.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--- 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--- 66 (173)
||||++. ++.+||++++++|||||+++ ..+|++...|+..+.......++|+||||||+||...+
T Consensus 200 t~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~ 279 (353)
T 1cip_A 200 VGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 279 (353)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTT
T ss_pred CCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccc
Confidence 7999874 99999999999999999999 46799999999988875433679999999999985332
Q ss_pred ------------cCCHHHHHHHhh-----------hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 ------------QVDESLGRSTAV-----------KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 ------------~v~~~~~~~~~~-----------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++..++. ..++.+++|||+++. ||.++|.++++.+..
T Consensus 280 ~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~-nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 280 SPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-NVQFVFDAVTDVIIK 344 (353)
T ss_dssp SCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred cchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch-hHHHHHHHHHHHHHH
Confidence 367788888776 356789999999999 999999999998875
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=137.25 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=80.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-H--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-T-- 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~-- 76 (173)
|+|++++ ++..|++++|++|+|||++++.+|+.+..|+..+.......++|+|||+||+|+.+... .++... +
T Consensus 216 t~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~ 293 (329)
T 3o47_A 216 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGL 293 (329)
T ss_dssp CC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTC
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhch
Confidence 8999884 89999999999999999999999999998887776654346899999999999975432 222222 2
Q ss_pred --hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+...++.|++|||++|. ||+++|++|++.+.+
T Consensus 294 ~~~~~~~~~~~~vSAk~g~-gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 294 HSLRHRNWYIQATCATSGD-GLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTCCSSCEEEEECBTTTTB-THHHHHHHHHHHHTC
T ss_pred hhhhcCCCEEEEEECCCCc-CHHHHHHHHHHHHHh
Confidence 22335679999999999 999999999998865
No 103
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.74 E-value=1.3e-18 Score=138.61 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=86.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLI----------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ-- 67 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~-- 67 (173)
||||+++ ++.+||++++++|+|||++ +..+|+++..|+..+.......++|+||||||+||.+++.
T Consensus 190 taGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~ 269 (354)
T 2xtz_A 190 VGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLD 269 (354)
T ss_dssp ECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTT
T ss_pred CCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccc
Confidence 7999984 9999999999999999998 7889999999999888754336799999999999854322
Q ss_pred C-------------------CHHHHHHHhhh----------------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 68 V-------------------DESLGRSTAVK----------------YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 68 v-------------------~~~~~~~~~~~----------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+ +.+++..++.. ..+.+++|||+++. ||+++|.++++.+.+
T Consensus 270 v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~-nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 270 VPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK-LVKKTFKLVDETLRR 345 (354)
T ss_dssp SCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch-hHHHHHHHHHHHHHH
Confidence 1 14566666432 12446899999999 999999999988865
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=2.7e-18 Score=142.28 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=84.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-- 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 77 (173)
|||+++. ++..||+++|++|+|||++++++|+.+..|+.++.......++|+|||+||+|+.+.. ..++.....
T Consensus 373 t~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~ 450 (497)
T 3lvq_E 373 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGL 450 (497)
T ss_dssp ECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhch
Confidence 8999884 8899999999999999999999999999999888765434689999999999997532 233332221
Q ss_pred ---hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
...++.+++|||++|. ||+++|++|++.+.+
T Consensus 451 ~~~~~~~~~~~~~SA~~g~-gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 451 TRIRDRNWYVQPSCATSGD-GLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTCCSSCEEEEECBTTTTB-THHHHHHHHHHHCC-
T ss_pred hhhhcCCeEEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence 2234569999999999 999999999987755
No 105
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.73 E-value=4.3e-18 Score=137.44 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=87.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ-- 67 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~-- 67 (173)
||||+++ ++.+||++++++|||||+++ ..+|+++..|+..+.......++|+||||||+||...+.
T Consensus 224 taGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~ 303 (402)
T 1azs_C 224 VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLA 303 (402)
T ss_dssp ECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHH
T ss_pred cchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcc
Confidence 7999884 99999999999999999999 889999999999988764346899999999999854332
Q ss_pred -C---------------------------CHHHHHHHh-----hh--------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 68 -V---------------------------DESLGRSTA-----VK--------YNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 68 -v---------------------------~~~~~~~~~-----~~--------~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+ +.+++..++ .. .++.+++|||+++. ||+++|..+.+.
T Consensus 304 ~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~-nV~~vF~~v~~~ 382 (402)
T 1azs_C 304 GKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE-NIRRVFNDCRDI 382 (402)
T ss_dssp CSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHH-HHHHHHHHHHHH
T ss_pred cccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCc-CHHHHHHHHHHH
Confidence 2 134555553 21 24667899999999 999999999988
Q ss_pred Hhc
Q psy2792 107 SRG 109 (173)
Q Consensus 107 i~~ 109 (173)
+..
T Consensus 383 I~~ 385 (402)
T 1azs_C 383 IQR 385 (402)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 106
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.72 E-value=4.4e-18 Score=136.03 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--- 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--- 66 (173)
||||+.+ ++.+||++++++|||||+++ ..+|++...|+..+.......++|+|||+||+||..++
T Consensus 208 t~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~ 287 (362)
T 1zcb_A 208 VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV 287 (362)
T ss_dssp ECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTT
T ss_pred ccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccc
Confidence 7999874 99999999999999999999 67999999999988875333679999999999986322
Q ss_pred -------------cCCHHHHHHHh--------h---hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 67 -------------QVDESLGRSTA--------V---KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 67 -------------~v~~~~~~~~~--------~---~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++..++ . ..++.+++|||+++. ||+++|.++.+.+.+
T Consensus 288 ~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~-nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 288 VSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE-NIRLVFRDVKDTILH 353 (362)
T ss_dssp CCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred cchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch-hHHHHHHHHHHHHHH
Confidence 26677777765 1 345778999999999 999999999998865
No 107
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.72 E-value=9.8e-17 Score=117.53 Aligned_cols=106 Identities=32% Similarity=0.426 Sum_probs=94.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++. +...|+.++|++|+|||+++..+|+++..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..
T Consensus 61 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~ 139 (199)
T 2f9l_A 61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 139 (199)
T ss_dssp CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHHHHHHH
Confidence 7888763 77889999999999999999999999989998877653 35789999999999987777888889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.++++||+++. |++++|++|.+.+.+
T Consensus 140 ~~~~~~d~Sal~~~-~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 140 NNLSFIETSALDST-NVEEAFKNILTEIYR 168 (199)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 999999999988865
No 108
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.71 E-value=6.9e-18 Score=133.02 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=90.3
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLI----------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--- 66 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--- 66 (173)
||||++ .++.+||++++++|+|||++ +..+|++...|+..+.......++|++|||||+||..++
T Consensus 174 tgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~ 253 (327)
T 3ohm_A 174 VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMY 253 (327)
T ss_dssp ECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTT
T ss_pred cCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhcc
Confidence 799987 49999999999999999665 667888888888888765434679999999999986543
Q ss_pred -------------cCCHHHHHHH----------hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 67 -------------QVDESLGRST----------AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 67 -------------~v~~~~~~~~----------~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.++.+++..+ +...++.+++|||+++. ||+.+|..+.+.+++..
T Consensus 254 ~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~-nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 254 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE-NIRFVFAAVKDTILQLN 320 (327)
T ss_dssp SCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHH-HHHHHHHHHHHHHHHTT
T ss_pred chHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCH-HHHHHHHHHHHHHHHHh
Confidence 4677888877 34456778999999999 99999999999998743
No 109
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=2e-17 Score=129.30 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=77.0
Q ss_pred ccHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeE
Q psy2792 8 GTLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTF 84 (173)
Q Consensus 8 ~~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~ 84 (173)
.+++.||+++|++|+|||+++++ +|+.+..|+..+.. .++|++||+||+||.+.+.+ +++..++..++ +.|
T Consensus 76 ~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~ 149 (301)
T 1u0l_A 76 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPI 149 (301)
T ss_dssp EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCE
T ss_pred eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcE
Confidence 38899999999999999999998 79999999988765 46999999999999754433 34566676666 889
Q ss_pred EEEcccCCcccHHHHHHHHHH
Q psy2792 85 HEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 85 ~e~Sak~g~~~v~~lf~~l~~ 105 (173)
++|||++|. ||+++|..+..
T Consensus 150 ~~~SAktg~-gv~~lf~~l~g 169 (301)
T 1u0l_A 150 VKTSAKTGM-GIEELKEYLKG 169 (301)
T ss_dssp EECCTTTCT-THHHHHHHHSS
T ss_pred EEEECCCCc-CHHHHHHHhcC
Confidence 999999999 99999987754
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.70 E-value=2.6e-17 Score=117.26 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=78.1
Q ss_pred CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. +...|++ ++|++++|||+++.++ ...|+.++.+ .++|+++|+||+|+...+.+..
T Consensus 57 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~- 128 (165)
T 2wji_A 57 LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEI- 128 (165)
T ss_dssp CCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC-
T ss_pred CCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhh-
Confidence 8998863 4467776 8999999999998543 4558777765 3589999999999875555543
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
++..++..+++.++++||++|. ||+++|++|++.+
T Consensus 129 ~~~~~~~~~~~~~~~~SA~~~~-~v~~l~~~l~~~~ 163 (165)
T 2wji_A 129 DVDKLEKILGVKVVPLSAAKKM-GIEELKKAISIAV 163 (165)
T ss_dssp CHHHHHHHHTSCEEECBGGGTB-SHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCEEEEEcCCCC-CHHHHHHHHHHHh
Confidence 4667788888999999999999 9999999998865
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.70 E-value=9.4e-17 Score=120.15 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=75.5
Q ss_pred hhhcccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH---HHHHHhhhcC--Ce
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES---LGRSTAVKYN--CT 83 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~---~~~~~~~~~~--~~ 83 (173)
..++..+|++|+|||++++.+|+. ...|+..+.... .++|+++|+||+|+.+.+.+..+ ....++...+ +.
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 356889999999999999888752 245666665542 47999999999999877777654 4556677776 88
Q ss_pred EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 84 FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 84 ~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+++|||++|. ||+++|++|++.+.+
T Consensus 181 ~~~~SA~~g~-gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 181 FSSFSTLTGV-GVEQAKITACELLKN 205 (228)
T ss_dssp EEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred EEEEecccCC-CHHHHHHHHHHHHHH
Confidence 9999999999 999999999998875
No 112
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.69 E-value=2.9e-16 Score=114.55 Aligned_cols=104 Identities=33% Similarity=0.455 Sum_probs=92.1
Q ss_pred CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|+++ .+...|+++++++++|||+++..+|+++..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..
T Consensus 85 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~ 163 (191)
T 1oix_A 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 163 (191)
T ss_dssp ECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 678877 478889999999999999999999999989998876653 35789999999999987777888889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.++++||+++. |++++|+.|.+.+
T Consensus 164 ~~~~~ld~Sald~~-~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 NGLSFIETSALDST-NVEAAFQTILTEI 190 (191)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC-CHHHHHHHHHHHh
Confidence 99999999999999 9999999998765
No 113
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.69 E-value=2.6e-17 Score=121.59 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=71.5
Q ss_pred CCCCCCc---cHhhhcccCcEEEEEEeCCChh-hHHHHHH-HHHHHHhhh-CCCCCcEEEEEeCCCCCCCccCC------
Q psy2792 2 TIGLTEG---TLTAMICWADGCIIVYSLIDKE-SFDYAVS-TLQNLQRHR-AVNNVPVMLLANKLDLEHLRQVD------ 69 (173)
Q Consensus 2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~-s~~~~~~-~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~v~------ 69 (173)
|||+++. ++..|++++|++|+|||+++.. ++..+.. |...+.... ...++|++||+||+|+.......
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l 140 (214)
T 2fh5_B 61 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 140 (214)
T ss_dssp CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence 7899873 6788999999999999999964 5666655 444443321 13579999999999997543211
Q ss_pred ----------------------------HHHHHHHhh-hc--CCeEEEEcccCC------cccHHHHHHHHHHH
Q psy2792 70 ----------------------------ESLGRSTAV-KY--NCTFHEVSVADN------SPAIYQAFDHLLTE 106 (173)
Q Consensus 70 ----------------------------~~~~~~~~~-~~--~~~~~e~Sak~g------~~~v~~lf~~l~~~ 106 (173)
.+++..++. .+ ++.|++|||++| . ||+++|++|++.
T Consensus 141 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~-gv~~lf~~l~~~ 213 (214)
T 2fh5_B 141 EKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSA-DIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CC-BCHHHHHHHHHH
T ss_pred HHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccccc-ChHHHHHHHHHh
Confidence 001111111 11 567999999999 9 999999999875
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.68 E-value=6.3e-17 Score=126.70 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=86.3
Q ss_pred CCCCCC-------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCC--Ccc----
Q psy2792 2 TIGLTE-------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEH--LRQ---- 67 (173)
Q Consensus 2 TaG~e~-------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~--~~~---- 67 (173)
|||+++ .++..|++++|++|+|||++++++|+++..|...+..... .+++|++|||||+|+.+ .+.
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~ 138 (307)
T 3r7w_A 59 CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQ 138 (307)
T ss_dssp ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHH
T ss_pred CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHH
Confidence 788875 3778899999999999999999999999777554443210 26799999999999976 444
Q ss_pred CCHHHHHHHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 68 VDESLGRSTAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 68 v~~~~~~~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+..+++..++..+| +.|++|||++ . ++.++|..++..+..
T Consensus 139 v~~~~~~~~~~~~g~~~~~~~~tSa~~-~-~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 139 IMMKNLSETSSEFGFPNLIGFPTSIWD-E-SLYKAWSQIVCSLIP 181 (307)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEECCTTS-S-HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCCCeEEEEeeecC-C-hHHHHHHHHHHHHcC
Confidence 55677888999887 7899999999 7 899999999887654
No 115
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.65 E-value=6.6e-17 Score=127.92 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=85.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLI----------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--- 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--- 66 (173)
||||+++ ++.+||++++++|||||++ +..+|++...|+..+.......++|+||||||+||..++
T Consensus 168 taGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~ 247 (340)
T 4fid_A 168 VGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTK 247 (340)
T ss_dssp CCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHH
T ss_pred CCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCc
Confidence 8999874 9999999999999999999 678899999999888876534689999999999985321
Q ss_pred ------------cCCHHHHHHHhhh---------------------------cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 67 ------------QVDESLGRSTAVK---------------------------YNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 67 ------------~v~~~~~~~~~~~---------------------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
....+++..++.. ..+.+++|||++.. ||+.+|..+.+.|
T Consensus 248 ~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~-nv~~vF~~v~~~I 326 (340)
T 4fid_A 248 VPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS-NIKRVFMLAVDVI 326 (340)
T ss_dssp SCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH-HHHHHHHHHHHHH
T ss_pred chHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH-HHHHHHHHHHHHH
Confidence 1235555444322 13668899999999 9999999999988
Q ss_pred hc
Q psy2792 108 RG 109 (173)
Q Consensus 108 ~~ 109 (173)
++
T Consensus 327 l~ 328 (340)
T 4fid_A 327 MK 328 (340)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.64 E-value=1.1e-15 Score=119.66 Aligned_cols=111 Identities=15% Similarity=0.043 Sum_probs=91.6
Q ss_pred CCCCCC------------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC
Q psy2792 2 TIGLTE------------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69 (173)
Q Consensus 2 TaG~e~------------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~ 69 (173)
|+|+.+ .....++.++|++|+|||+++..++++...|+..+.. .++|+++|+||+|+.......
T Consensus 66 TPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~ 141 (308)
T 3iev_A 66 TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNV 141 (308)
T ss_dssp CCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGG
T ss_pred CcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHH
Confidence 788854 1456789999999999999998888888888887776 358999999999997445555
Q ss_pred HHHHHHHhhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCccc
Q psy2792 70 ESLGRSTAVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHK 117 (173)
Q Consensus 70 ~~~~~~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~ 117 (173)
.+....+...++ ..++++||++|. ||+++|++|.+.+.+.+..+++.
T Consensus 142 ~~~~~~l~~~~~~~~~i~~vSA~~g~-gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 142 LPLIDEIHKKHPELTEIVPISALKGA-NLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp HHHHHHHHHHCTTCCCEEECBTTTTB-SHHHHHHHHHHHSCBCCCSSCTT
T ss_pred HHHHHHHHHhccCCCeEEEEeCCCCC-CHHHHHHHHHHhCccCCCCCCcc
Confidence 666777777765 779999999999 99999999999998877766543
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.63 E-value=1.3e-16 Score=114.57 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCCCCCc--------c--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------T--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. + ...|++++|++|+|||+++..+|+. ..|+..+.+.. ..++|+++|+||+|+.+..
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~----- 131 (172)
T 2gj8_A 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGET----- 131 (172)
T ss_dssp CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCC-----
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcch-----
Confidence 8898762 1 2247899999999999999888763 56887777654 3579999999999985321
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++...++.+++|||++|. ||+++|++|.+.+..
T Consensus 132 --~~~~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 132 --LGMSEVNGHALIRLSARTGE-GVDVLRNHLKQSMGF 166 (172)
T ss_dssp --CEEEEETTEEEEECCTTTCT-THHHHHHHHHHHC--
T ss_pred --hhhhhccCCceEEEeCCCCC-CHHHHHHHHHHHhhh
Confidence 12233456789999999999 999999999987643
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.63 E-value=6.6e-16 Score=129.17 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=87.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|||+++. +...|++++|++|+|||+++. +.+..|+.++.... .++|+|||+||+|+...+.+..+++..++..
T Consensus 105 t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~ 179 (535)
T 3dpu_A 105 FGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA 179 (535)
T ss_dssp CCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG
T ss_pred CCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh
Confidence 7999874 788899999999999999764 55678999998876 5799999999999988788888889999999
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
.++.+++|||++|. ||+++|..|++.+.+...
T Consensus 180 ~~~~~~~vSA~~g~-gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 180 IENRFHRISCKNGD-GVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp GTTCEEECCC------CTTHHHHHHHHHTCTTS
T ss_pred cCCceEEEecCccc-CHHHHHHHHHHHHhcccc
Confidence 99999999999999 999999999998877543
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=1.8e-16 Score=114.48 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=77.0
Q ss_pred cHhhhccc-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792 9 TLTAMICW-ADGCIIVYSLIDKESFDYA-VSTLQN--------LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78 (173)
Q Consensus 9 ~~~~y~~~-ad~iilv~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 78 (173)
+...|+++ ++++++||++.|..+|+.+ ..|... +.......++|+++|+||+|+...+ .+++..++.
T Consensus 71 ~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~ 147 (190)
T 2cxx_A 71 EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAE 147 (190)
T ss_dssp HHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHH
T ss_pred HHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHH
Confidence 66778888 9999899999998899887 667653 2222212579999999999997544 556777888
Q ss_pred hcCCe-------EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 KYNCT-------FHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 ~~~~~-------~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.+++. +++|||++|. ||+++|++|++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGD-NIERLKNRIFEVIRE 184 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred HhhhhhhccCCcEEEEecCCCC-CHHHHHHHHHHhcch
Confidence 77764 7999999999 999999999998876
No 120
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.61 E-value=8.7e-15 Score=104.52 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=71.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 76 (173)
|+|+++. ++..++.++|++|+|||+++ .++++.+ ..+.. .++|+++|+||+|+.+. ..++....
T Consensus 62 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~~----~~~p~ilv~nK~Dl~~~---~~~~~~~~ 130 (178)
T 2lkc_A 62 TPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAKA----ANVPIIVAINKMDKPEA---NPDRVMQE 130 (178)
T ss_dssp CCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHGG----GSCCEEEEEETTTSSCS---CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHh----CCCCEEEEEECccCCcC---CHHHHHHH
Confidence 8999884 77889999999999999998 4444332 22222 46899999999999653 22333322
Q ss_pred hhh-------cC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 AVK-------YN--CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 ~~~-------~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
... ++ +.+++|||++|. ||+++|++|++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 131 LMEYNLVPEEWGGDTIFCKLSAKTKE-GLDHLLEMILLVSEM 171 (178)
T ss_dssp HTTTTCCBTTTTSSEEEEECCSSSSH-HHHHHHHHHHHHHHH
T ss_pred HHhcCcChhHcCCcccEEEEecCCCC-CHHHHHHHHHHhhhh
Confidence 222 22 579999999999 999999999988765
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.61 E-value=8.4e-16 Score=111.00 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=81.4
Q ss_pred CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. +...|+. ++|++++|+|.++ ++....|+..+.. .++|+++|+||+|+...+.+. .
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~ 132 (188)
T 2wjg_A 61 LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-I 132 (188)
T ss_dssp CCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-C
T ss_pred CCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-H
Confidence 7898863 4667776 4999999999875 5666778887765 468999999999987555554 3
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
++..++..+++.++++||+++. ||+++|++|++.+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 133 DVDKLEKILGVKVVPLSAAKKM-GIEELKKAISIAVKDKK 171 (188)
T ss_dssp CHHHHHHHHTSCEEECBGGGTB-SHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCeEEEEecCCC-CHHHHHHHHHHHHHhcc
Confidence 5677788888999999999999 99999999999887643
No 122
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.61 E-value=6.4e-16 Score=120.79 Aligned_cols=96 Identities=19% Similarity=0.040 Sum_probs=77.9
Q ss_pred CCCC--ccHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHhhh
Q psy2792 4 GLTE--GTLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTAVK 79 (173)
Q Consensus 4 G~e~--~~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~~~ 79 (173)
++++ .+.+.|++++|++|+|||+++++ +++.+..|+..+.. .++|++||+||+||.+..++. .++...++..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~ 140 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD 140 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 3555 37788999999999999999987 89999999987765 469999999999997543222 3445566667
Q ss_pred cCCeEEEEcccCCcccHHHHHHHHH
Q psy2792 80 YNCTFHEVSVADNSPAIYQAFDHLL 104 (173)
Q Consensus 80 ~~~~~~e~Sak~g~~~v~~lf~~l~ 104 (173)
.++.++++||++|. |++++|..+.
T Consensus 141 ~g~~~~~~SA~~g~-gi~~L~~~l~ 164 (302)
T 2yv5_A 141 AGYDVLKVSAKTGE-GIDELVDYLE 164 (302)
T ss_dssp TTCEEEECCTTTCT-THHHHHHHTT
T ss_pred CCCeEEEEECCCCC-CHHHHHhhcc
Confidence 78999999999999 9999997654
No 123
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.58 E-value=1.8e-15 Score=106.32 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=70.1
Q ss_pred CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH
Q psy2792 2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72 (173)
Q Consensus 2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 72 (173)
|+|+++. ....+++++|++|+|||+++..+.. ..|+..+... .++|+++|+||+|+.+.. ++
T Consensus 56 t~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~ 126 (161)
T 2dyk_A 56 TGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE----LY 126 (161)
T ss_dssp CGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG----GG
T ss_pred CCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch----Hh
Confidence 7888761 4567899999999999999864432 2333333332 358999999999997532 33
Q ss_pred HHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 73 GRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 73 ~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
+..++ ..++ .++++||++|. |++++|++|++.+
T Consensus 127 ~~~~~-~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~l 160 (161)
T 2dyk_A 127 LGPLY-GLGFGDPIPTSSEHAR-GLEELLEAIWERL 160 (161)
T ss_dssp CGGGG-GGSSCSCEECBTTTTB-SHHHHHHHHHHHC
T ss_pred HHHHH-hCCCCCeEEEecccCC-ChHHHHHHHHHhC
Confidence 44455 5676 79999999999 9999999998764
No 124
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.57 E-value=4e-15 Score=108.00 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=69.8
Q ss_pred cHhhhcccC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHH-HhhhcCC
Q psy2792 9 TLTAMICWA---DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRS-TAVKYNC 82 (173)
Q Consensus 9 ~~~~y~~~a---d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~-~~~~~~~ 82 (173)
+...|++++ |++|+|||+++..++.... ++..+.. .++|+++|+||+|+.+.+++.. +++.. ++...++
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 577888888 9999999999987776543 2222222 4689999999999976554432 23333 3334568
Q ss_pred eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 83 TFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 83 ~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.++++||++|. ||+++|++|.+.+.
T Consensus 170 ~~~~~Sa~~~~-gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKK-GKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCT-THHHHHHHHHHHHT
T ss_pred ceEEEEccCCC-CHHHHHHHHHHHhc
Confidence 89999999999 99999999998764
No 125
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.52 E-value=1.7e-14 Score=104.36 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=68.4
Q ss_pred cHhhhcccC---cEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCCHHHHHHHhhhcC
Q psy2792 9 TLTAMICWA---DGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVDESLGRSTAVKYN 81 (173)
Q Consensus 9 ~~~~y~~~a---d~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~~~~~~~~~~ 81 (173)
+...|++++ |++++|+|.++..+ +..+..|+.. .++|+++|+||+|+.+.. ....+++..++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 667788877 99999999987533 3333344432 258999999999996432 233345556666544
Q ss_pred -CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 82 -CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 82 -~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+.+++|||++|. ||+++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~-gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGE-GISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCT-THHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCC-CHHHHHHHHHHHhhc
Confidence 789999999999 999999999988754
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.50 E-value=2.5e-14 Score=110.24 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=78.2
Q ss_pred CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||++.. +...|+. ++|++|+|||+++.+++ ..|...+.+ .++|+++|+||+|+...+.+. .
T Consensus 56 tpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~ 127 (272)
T 3b1v_A 56 LPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKK-I 127 (272)
T ss_dssp CCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCC-C
T ss_pred CCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcH-H
Confidence 7898762 5677886 59999999999986544 456666665 368999999999986544444 3
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++..++..+++++++|||++|. ||+++|++|++.+.
T Consensus 128 ~~~~l~~~lg~~vi~~SA~~g~-gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 128 NVDKLSYHLGVPVVATSALKQT-GVDQVVKKAAHTTT 163 (272)
T ss_dssp CHHHHHHHHTSCEEECBTTTTB-SHHHHHHHHHHSCT
T ss_pred HHHHHHHHcCCCEEEEEccCCC-CHHHHHHHHHHHHh
Confidence 4567788889999999999999 99999999988654
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.50 E-value=1.6e-14 Score=114.57 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=80.4
Q ss_pred cHhhhccc---CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC
Q psy2792 9 TLTAMICW---ADGCIIVYSLID---KESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN 81 (173)
Q Consensus 9 ~~~~y~~~---ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 81 (173)
+...|++. +|++|+|||+++ .++++++..|+.++..+.. ..++|++||+||+|+.... +....++..+.
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~ 301 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLT 301 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCC
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhh
Confidence 66677665 999999999998 7889999999999988642 2479999999999986422 34555666665
Q ss_pred --CeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 82 --CTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 82 --~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
+.++++||+++. ||+++|.+|.+.+.+.+.
T Consensus 302 ~~~~v~~iSA~tg~-gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 302 DDYPVFPISAVTRE-GLRELLFEVANQLENTPE 333 (342)
T ss_dssp SCCCBCCCSSCCSS-TTHHHHHHHHHHHTSCCC
T ss_pred cCCCEEEEECCCCc-CHHHHHHHHHHHHhhCcc
Confidence 679999999999 999999999998876443
No 128
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.50 E-value=3.1e-14 Score=108.83 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=78.8
Q ss_pred CCCCCCc--------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||++.. +...|+ .++|++|+|||+++.++. ..|...+.+ .++|+++|+||+|+...+.+..
T Consensus 59 tpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~- 130 (258)
T 3a1s_A 59 LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKI- 130 (258)
T ss_dssp CCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCB-
T ss_pred CCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHH-
Confidence 7898763 346777 589999999999986554 346666655 3599999999999875555542
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+...++..++++++++||++|. ||+++|++|.+.+..
T Consensus 131 ~~~~l~~~lg~~vi~~SA~~g~-gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 131 DRYELQKHLGIPVVFTSSVTGE-GLEELKEKIVEYAQK 167 (258)
T ss_dssp CHHHHHHHHCSCEEECCTTTCT-THHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCEEEEEeeCCc-CHHHHHHHHHHHhhc
Confidence 3677888889999999999999 999999999987753
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.49 E-value=1.3e-13 Score=109.82 Aligned_cols=93 Identities=10% Similarity=0.174 Sum_probs=76.7
Q ss_pred hhcccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792 12 AMICWADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV 89 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 89 (173)
.+...+|++|+|+|+++.. +++....|+..+.... .+.|+++|+||+|+.....+ +++..++...++.+++|||
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence 3556799999999999877 7888888999888765 37999999999999754332 3455666677889999999
Q ss_pred cCCcccHHHHHHHHHHHHhc
Q psy2792 90 ADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 90 k~g~~~v~~lf~~l~~~i~~ 109 (173)
++|. ||+++|++|.+.+..
T Consensus 318 ~~g~-gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGT-GIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTB-THHHHHHHHHHHHHH
T ss_pred CCCc-CHHHHHHHHHHHHHH
Confidence 9999 999999999988754
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=9.5e-15 Score=108.06 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCCCCCc--cHhhhccc----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh---CCCCCcEEEEEeCCCCCCCccCC--
Q psy2792 2 TIGLTEG--TLTAMICW----ADGCIIVYSLI-DKESFDYAVSTLQNLQRHR---AVNNVPVMLLANKLDLEHLRQVD-- 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~----ad~iilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~-- 69 (173)
|+|+++. ++..|+++ +|++|+|||++ ++++|..+..|+.++.... ...++|+++|+||+|+...+.+.
T Consensus 62 t~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 141 (218)
T 1nrj_B 62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKI 141 (218)
T ss_dssp CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHH
Confidence 8999874 77788887 99999999999 8899999999998887653 13679999999999998765543
Q ss_pred ----HHHHHHHhhhcCCeEEEEcccCCc
Q psy2792 70 ----ESLGRSTAVKYNCTFHEVSVADNS 93 (173)
Q Consensus 70 ----~~~~~~~~~~~~~~~~e~Sak~g~ 93 (173)
.+++..++...++.|+++||++|.
T Consensus 142 ~~~l~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 142 KDALESEIQKVIERRKKSLNEVERKINE 169 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHhcccccccccccc
Confidence 445666777777889999999987
No 131
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.47 E-value=9.2e-14 Score=108.49 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=76.6
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHH-HHHHhhhCCCCCcEEEEEeCCCCCCCcc-CC
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTL-QNLQRHRAVNNVPVMLLANKLDLEHLRQ-VD 69 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~piilv~NK~Dl~~~~~-v~ 69 (173)
|||+.+. ....|++++|++|+|||+++..+.. ..|+ ..+.... .++|+++|+||+|+..... +
T Consensus 62 TpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~~- 136 (301)
T 1wf3_A 62 TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPILLVGNKLDAAKYPEEA- 136 (301)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEEEEEECGGGCSSHHHH-
T ss_pred CccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEEEEEECcccCCchHHH-
Confidence 8998761 4567899999999999999864443 4555 4555442 4699999999999865332 1
Q ss_pred HHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcc
Q psy2792 70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH 116 (173)
Q Consensus 70 ~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~ 116 (173)
.+....+ .....++++||++|. |++++|+.|...+.+.+..+++
T Consensus 137 ~~~~~~~--~~~~~~~~iSA~~g~-gv~~l~~~l~~~l~~~~~~y~~ 180 (301)
T 1wf3_A 137 MKAYHEL--LPEAEPRMLSALDER-QVAELKADLLALMPEGPFFYPE 180 (301)
T ss_dssp HHHHHHT--STTSEEEECCTTCHH-HHHHHHHHHHTTCCBCCCSSCT
T ss_pred HHHHHHh--cCcCcEEEEeCCCCC-CHHHHHHHHHHhcccCCCCCCc
Confidence 1222222 112568999999999 9999999999888776655543
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.46 E-value=1e-13 Score=113.85 Aligned_cols=92 Identities=10% Similarity=-0.004 Sum_probs=72.4
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc-----CCeEEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY-----NCTFHE 86 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~e 86 (173)
.|++.||++|+|+|+++..+ +....|...+.. .++|+|||+||+|+.+.+.+..+++.+.+... ++++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 48899999999999987533 233455555554 45899999999999876766666666655543 478999
Q ss_pred EcccCCcccHHHHHHHHHHHHhc
Q psy2792 87 VSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
|||++|. ||+++|+.+.+.+..
T Consensus 348 ~SA~~g~-gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKK-RIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCT-TGGGHHHHHHHHHHH
T ss_pred EcCCCCc-CHHHHHHHHHHHHHH
Confidence 9999999 999999999987765
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.45 E-value=4.5e-14 Score=114.87 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=80.2
Q ss_pred CCCCCCc--c-------HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH
Q psy2792 2 TIGLTEG--T-------LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72 (173)
Q Consensus 2 TaG~e~~--~-------~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 72 (173)
|||++++ + +..++.++|++|+|||++.. +....|+..+.+. ++|+++|+||+|+...+.. +.
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~ 160 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE--EL 160 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT--HH
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH--HH
Confidence 8999873 2 46689999999999999433 3336677777764 5899999999999865544 56
Q ss_pred HHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 73 ~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
...++..+++.++++||++|. |++++|++|.+.+.+.
T Consensus 161 ~~~l~~~~g~~v~~vSAktg~-gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 161 KGLYESRYEAKVLLVSALQKK-GFDDIGKTISEILPGD 197 (423)
T ss_dssp HHHSSCCTTCCCCCCSSCCTT-STTTHHHHHHHHSCCC
T ss_pred HHHHHHHcCCCEEEEECCCCC-CHHHHHHHHHHhhhhh
Confidence 677777888999999999999 9999999999988654
No 134
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.44 E-value=3.8e-14 Score=108.28 Aligned_cols=96 Identities=19% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCCCCCc------------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc
Q psy2792 2 TIGLTEG------------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ 67 (173)
Q Consensus 2 TaG~e~~------------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~ 67 (173)
|||++.. +...|+ .++|++|+|+|+++.+++..+..| +.+ .++|+++|+||+|+...+.
T Consensus 55 tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~ 127 (256)
T 3iby_A 55 LPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRG 127 (256)
T ss_dssp CCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTT
T ss_pred CCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCC
Confidence 7888652 567788 899999999999997666544333 333 3689999999999865443
Q ss_pred CCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792 68 VDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 68 v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+.. ....++..++++++++||++|. |++++|++|.+.
T Consensus 128 ~~~-~~~~l~~~lg~~vi~~SA~~g~-gi~el~~~i~~~ 164 (256)
T 3iby_A 128 ISI-DTEKLESLLGCSVIPIQAHKNI-GIPALQQSLLHC 164 (256)
T ss_dssp CEE-CHHHHHHHHCSCEEECBGGGTB-SHHHHHHHHHTC
T ss_pred cHH-HHHHHHHHcCCCEEEEECCCCC-CHHHHHHHHHhh
Confidence 322 2345677789999999999999 999999999876
No 135
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.43 E-value=1.7e-13 Score=113.05 Aligned_cols=100 Identities=20% Similarity=0.108 Sum_probs=67.8
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. .+..|+.++|++|+|||++++.+++++..+...+... .++|+++|+||+|+.....+
T Consensus 288 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~--- 361 (476)
T 3gee_A 288 TAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADA--- 361 (476)
T ss_dssp --------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHH---
T ss_pred CCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccch---
Confidence 8998762 2355899999999999999988876443333333322 36899999999999765433
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
....+.......+++|||++|. ||+++|++|.+.+.
T Consensus 362 ~~~~l~~~~~~~~i~vSAktg~-GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 362 LIRAIADGTGTEVIGISALNGD-GIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHHTSCEEECBTTTTB-SHHHHHHHHTHHHH
T ss_pred hHHHHHhcCCCceEEEEECCCC-CHHHHHHHHHHHHh
Confidence 2233443323679999999999 99999999999887
No 136
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.42 E-value=7e-14 Score=107.71 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=74.2
Q ss_pred CCCCCCc------------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc
Q psy2792 2 TIGLTEG------------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ 67 (173)
Q Consensus 2 TaG~e~~------------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~ 67 (173)
|||+++. +...|+ +++|++|+|+|.++.+++.. |...+.+. ++|+++|+||+|+.+.+.
T Consensus 57 tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~----~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 57 LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp CCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH----TCCEEEEEECHHHHHHTT
T ss_pred CcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc----CCCEEEEEECccchhhhh
Confidence 7888762 244454 79999999999998665543 44444443 589999999999864433
Q ss_pred CCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 68 VDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 68 v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+. .....++..++++++++||++|. |++++|++|.+.+...
T Consensus 130 ~~-~~~~~l~~~lg~~~i~~SA~~g~-gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 130 IR-IEIDALSARLGCPVIPLVSTRGR-GIEALKLAIDRYKANE 170 (274)
T ss_dssp EE-ECHHHHHHHHTSCEEECCCGGGH-HHHHHHHHHHTCCCCC
T ss_pred HH-HHHHHHHHhcCCCEEEEEcCCCC-CHHHHHHHHHHHHhcC
Confidence 22 12456677789999999999999 9999999998766543
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.42 E-value=1.5e-13 Score=112.29 Aligned_cols=92 Identities=10% Similarity=-0.034 Sum_probs=72.4
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-----HhhhcCCeEEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-----TAVKYNCTFHE 86 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e 86 (173)
.+++++|++|+|||+++..++++. .|+..+.. .++|+|+|+||+|+.+.+.+..++... ++...++++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 589999999999999998887775 57776665 468999999999998665554333322 22233678999
Q ss_pred EcccCCcccHHHHHHHHHHHHhc
Q psy2792 87 VSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
+||++|. ||+++|+.+.+.+..
T Consensus 328 ~SA~tg~-~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKK-RIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCT-TGGGHHHHHHHHHHH
T ss_pred EecccCC-CHHHHHHHHHHHHHH
Confidence 9999999 999999999987765
No 138
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.42 E-value=5.1e-13 Score=98.91 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=65.9
Q ss_pred cHhhhccc---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhh----
Q psy2792 9 TLTAMICW---ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVK---- 79 (173)
Q Consensus 9 ~~~~y~~~---ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~---- 79 (173)
+...|++. +|++|+|+|.++..+.. ...|+..+.. .++|+++|+||+|+.....+.. +........
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 55677777 78899999998753322 2345555554 4589999999999875333211 111222222
Q ss_pred ---cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 ---YNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.++.++++||++|. ||+++|++|.+.+...
T Consensus 180 ~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRT-GLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTB-SHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCc-CHHHHHHHHHHhcCcc
Confidence 45789999999999 9999999999988653
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.42 E-value=1.2e-12 Score=108.19 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCCCC-Cc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLT-EG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e-~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|||++ +. ....|++++|++|+|||++++.++++...| +.+ .+.|+++|+||+|+... +..
T Consensus 298 TaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l------~~~piivV~NK~DL~~~--~~~ 368 (482)
T 1xzp_A 298 TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEK--INE 368 (482)
T ss_dssp SSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCC--CCH
T ss_pred CCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh------cCCCEEEEEECcccccc--cCH
Confidence 89988 42 245789999999999999998887664332 222 35899999999999642 444
Q ss_pred HHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 71 ~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++...++. .++.+++|||++|. ||+++|++|.+.+.
T Consensus 369 ~~~~~~~~-~~~~~i~iSAktg~-Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 369 EEIKNKLG-TDRHMVKISALKGE-GLEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHT-CSTTEEEEEGGGTC-CHHHHHHHHHHHTH
T ss_pred HHHHHHhc-CCCcEEEEECCCCC-CHHHHHHHHHHHHh
Confidence 55554433 34679999999999 99999999998765
No 140
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.41 E-value=4.3e-13 Score=98.90 Aligned_cols=102 Identities=8% Similarity=0.054 Sum_probs=70.2
Q ss_pred CCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHH---HhhhC-CCCCcEEEEEeCC-CCCCCccCCHHHHHHH
Q psy2792 4 GLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNL---QRHRA-VNNVPVMLLANKL-DLEHLRQVDESLGRST 76 (173)
Q Consensus 4 G~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i---~~~~~-~~~~piilv~NK~-Dl~~~~~v~~~~~~~~ 76 (173)
||+. .+|++||.++|++|||+|.+|.+.++ ....+.++ ..... ..++|++|++||. |++ ...+..+..+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHHH
Confidence 6765 59999999999999999999986544 33333232 22211 2578999999995 775 34455554432
Q ss_pred hh----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 77 AV----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 77 ~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.. ...+.++.|||++|+ |+.+.++||++.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGe-GL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLT-GFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCT-THHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCc-CHHHHHHHHHHHHHh
Confidence 21 234678999999999 999999999976654
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.37 E-value=1.8e-12 Score=104.85 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=78.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA 77 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~ 77 (173)
|||++++ ....++.++|++|+|+|+++..++.+...|+..+.... ..|+++|+||+|+.+..... .++...+.
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 7899885 66778999999999999998777777777877666543 35899999999997532211 12222333
Q ss_pred hhc---CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 78 VKY---NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 78 ~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
... +++++++||++|. ||+++|+.|.+.+..
T Consensus 159 ~~~~~~~~~ii~vSA~~g~-gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKI-NIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTSTTTTCCEEECBTTTTB-SHHHHHHHHHHHSCC
T ss_pred HhhCCCCCEEEEEECCCCc-ChHHHHHHHHHhCCC
Confidence 222 4679999999999 999999999987754
No 142
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.36 E-value=1.1e-12 Score=100.60 Aligned_cols=101 Identities=11% Similarity=0.014 Sum_probs=77.4
Q ss_pred CCCCCCc--------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG--------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~--------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|+|+++. +...|+ .++|++|+|+|.++.+ ....|...+... ..+|+++|+||+|+.+.+.+...
T Consensus 57 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~ 130 (271)
T 3k53_A 57 LPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKID 130 (271)
T ss_dssp CCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCC
T ss_pred CCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHH
Confidence 7898762 566777 6899999999998853 334455555543 23899999999998654433322
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
...++..++++++++||++|. |++++|+.+...+...
T Consensus 131 -~~~l~~~lg~~~~~~Sa~~g~-gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 131 -IKKMRKELGVPVIPTNAKKGE-GVEELKRMIALMAEGK 167 (271)
T ss_dssp -HHHHHHHHSSCEEECBGGGTB-THHHHHHHHHHHHHTC
T ss_pred -HHHHHHHcCCcEEEEEeCCCC-CHHHHHHHHHHHHhcc
Confidence 566778889999999999999 9999999999887654
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.35 E-value=2.1e-12 Score=105.54 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCCCCCc-----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLTEG-----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e~~-----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|||++.. .+..|+++||++|+|||+++..++.+ .|+..+.+. .++|++||+||+|+... . .
T Consensus 56 T~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~--~-~ 127 (439)
T 1mky_A 56 TCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLRE--F-E 127 (439)
T ss_dssp CTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHH--H-H
T ss_pred CCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCccc--c-H
Confidence 8998741 45678999999999999987644432 233333322 25899999999998532 1 1
Q ss_pred HHH-HHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 71 SLG-RSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 71 ~~~-~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
.+. .+++ .+++ .++++||++|. |++++|++|+..+.+.
T Consensus 128 ~~~~~~~~-~lg~~~~~~iSA~~g~-gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 128 REVKPELY-SLGFGEPIPVSAEHNI-NLDTMLETIIKKLEEK 167 (439)
T ss_dssp HHTHHHHG-GGSSCSCEECBTTTTB-SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hcCCCCEEEEeccCCC-CHHHHHHHHHHhcccc
Confidence 222 3444 4566 68999999999 9999999999988753
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.35 E-value=3.1e-12 Score=108.08 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=80.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ ....+++.+|++|+|||+++..+++....|...+. .++|+|+|+||+|+.... ..+...++...
T Consensus 78 TPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~ 150 (599)
T 3cb4_D 78 TPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDI 150 (599)
T ss_dssp CCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHH
Confidence 8999885 67788999999999999998777777777765442 358999999999997533 23334556666
Q ss_pred cCCe---EEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNCT---FHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~~---~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+++. ++++||++|. ||+++|++|++.+...
T Consensus 151 lg~~~~~vi~vSAktg~-GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGV-GVQDVLERLVRDIPPP 183 (599)
T ss_dssp TCCCCTTCEEECTTTCT-THHHHHHHHHHHSCCC
T ss_pred hCCCcceEEEeecccCC-CchhHHHHHhhcCCCc
Confidence 6653 8999999999 9999999999988653
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.34 E-value=4.7e-12 Score=106.96 Aligned_cols=101 Identities=9% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 79 (173)
|+|++++ ....+++.+|++|+|||+++..+++....|..... .++|+|+|+||+|+.... ..+...++...
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~ 152 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEV 152 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHT
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHh
Confidence 8999885 66778999999999999999877777777765442 468999999999997533 13334556666
Q ss_pred cCC---eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 80 YNC---TFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+++ .++++||++|. ||+++|++|++.+...
T Consensus 153 lg~~~~~vi~vSAktg~-GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 153 LGLDPEEAILASAKEGI-GIEEILEAIVNRIPPP 185 (600)
T ss_dssp SCCCGGGCEECBTTTTB-SHHHHHHHHHHHSCCC
T ss_pred hCCCcccEEEEEeecCC-CchHHHHHHHHhcccc
Confidence 665 38999999999 9999999999988653
No 146
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.30 E-value=6.5e-12 Score=97.96 Aligned_cols=108 Identities=17% Similarity=0.034 Sum_probs=78.3
Q ss_pred CCCCC-C----------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLT-E----------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e-~----------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|+|+. . .....+++.+|++++|+|.++ +.....|+.+... ..+.|+++|+||+|+...+....
T Consensus 63 TpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~ 136 (301)
T 1ega_A 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLL 136 (301)
T ss_dssp SSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHH
T ss_pred CcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHH
Confidence 88887 2 234678899999999999977 3334445544333 24689999999999865222223
Q ss_pred HHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcc
Q psy2792 71 SLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH 116 (173)
Q Consensus 71 ~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~ 116 (173)
+....++..+++ .++++||+++. |++++++.|...+.+.+..+++
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~~l~~~~~~~~~ 182 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRKHLPEATHHFPE 182 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHTTCCBCCCSSCT
T ss_pred HHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHHhCCcCCCCCCc
Confidence 445556666675 69999999999 9999999999888776655543
No 147
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=95.68 Aligned_cols=103 Identities=8% Similarity=0.038 Sum_probs=71.9
Q ss_pred CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHH---HHHhhh-CCCCCcEEEEEeC-CCCCCCccCCHHHHHH
Q psy2792 3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQ---NLQRHR-AVNNVPVMLLANK-LDLEHLRQVDESLGRS 75 (173)
Q Consensus 3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~piilv~NK-~Dl~~~~~v~~~~~~~ 75 (173)
.||+. .++++||.++|++|||+|.+|.+.++ ....+. .+.... ...++|++|++|| .|++. .++..+..+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 46765 49999999999999999999987654 222222 222111 1257999999996 68853 445555443
Q ss_pred Hhh----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 76 TAV----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
... ...+.++.|||++|+ |+.+.++||++.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGe-GL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLT-GFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCT-THHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCc-CHHHHHHHHHHHHHh
Confidence 221 234668899999999 999999999988754
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.29 E-value=4.9e-12 Score=104.02 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=65.6
Q ss_pred CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||+++. ....++.++|++|+|||.+++.++.. ..|+..+ .+.|+++|+||+|+.....+.
T Consensus 279 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~-- 349 (462)
T 3geh_A 279 TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT-- 349 (462)
T ss_dssp --------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST--
T ss_pred CCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH--
Confidence 8898652 23457899999999999998766554 4455444 237999999999997655443
Q ss_pred HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
....+. .+..++++||++|. |++++|++|.+.+...
T Consensus 350 ~~~~~~--~~~~~i~iSAktg~-Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 350 SLEYPE--NITQIVHTAAAQKQ-GIDSLETAILEIVQTG 385 (462)
T ss_dssp TCCCCT--TCCCEEEEBTTTTB-SHHHHHHHHHHHHTTS
T ss_pred HHHHhc--cCCcEEEEECCCCC-CHHHHHHHHHHHHhcc
Confidence 111111 34679999999999 9999999999988653
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.26 E-value=2.3e-11 Score=98.55 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=65.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID----KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~ 73 (173)
|+|++++ ....++..+|++|+|+|+++ +++++++..| ... ...|+++|+||+|+.+.... ..+++
T Consensus 88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL---GIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT---TCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc---CCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 6787664 33344667799999999994 5566655433 221 23589999999999764432 24556
Q ss_pred HHHhhh---cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 74 RSTAVK---YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 74 ~~~~~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++.. .++.++++||++|. ||+++|++|...+..
T Consensus 161 ~~~l~~~~~~~~~~i~vSA~~g~-gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 161 KEFVKGTIAENAPIIPISAHHEA-NIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHTTSTTTTCCEEEC-------CHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCCCCeEEEeeCCCCC-CHHHHHHHHHHhCCC
Confidence 666654 35789999999999 999999999987754
No 150
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.25 E-value=2.1e-11 Score=97.57 Aligned_cols=90 Identities=21% Similarity=0.155 Sum_probs=70.5
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC--
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC-- 82 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~-- 82 (173)
+.++|++.+|++|+|+|++|+. ..|..++.+.. .+.|+++|+||+||... .+..+.... ++...|+
T Consensus 62 ~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~ 133 (368)
T 3h2y_A 62 ILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKP 133 (368)
T ss_dssp HHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCc
Confidence 6778899999999999999863 45777777765 47899999999999653 233333333 3566676
Q ss_pred -eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 83 -TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 83 -~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++++||++|. |++++++.|.+..
T Consensus 134 ~~v~~iSA~~g~-gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 134 EDVFLISAAKGQ-GIAELADAIEYYR 158 (368)
T ss_dssp SEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred ccEEEEeCCCCc-CHHHHHhhhhhhc
Confidence 79999999999 9999999997654
No 151
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.24 E-value=4.8e-12 Score=103.36 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=65.8
Q ss_pred CCCCCC----------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792 2 TIGLTE----------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71 (173)
Q Consensus 2 TaG~e~----------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 71 (173)
|||++. ..+..|+++||++|+|+|+++..++.+ .|+..+... .++|++||+||+|+.....
T Consensus 58 T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~---- 128 (436)
T 2hjg_A 58 TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA---- 128 (436)
T ss_dssp ---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC---------
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh----
Confidence 889862 256778999999999999998766543 344443332 5689999999999864321
Q ss_pred HHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792 72 LGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 72 ~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~ 110 (173)
+..++. .+++ .++++||++|. |+.++|+++.+.+.+.
T Consensus 129 ~~~~~~-~lg~~~~~~iSA~~g~-gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 129 NIYDFY-SLGFGEPYPISGTHGL-GLGDLLDAVAEHFKNI 166 (436)
T ss_dssp CCCSSG-GGSSCCCEECBTTTTB-THHHHHHHHHHTGGGC
T ss_pred hHHHHH-HcCCCCeEEEeCcCCC-ChHHHHHHHHHhcCcc
Confidence 111222 3454 68999999999 9999999999988753
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.22 E-value=1.8e-11 Score=101.16 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=72.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGR 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~ 74 (173)
|+|++++ ....++..+|++|+|+|+++ +++++.+. .+.. .++|+|+|+||+|+.+.... ..++..
T Consensus 80 tPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~ 151 (482)
T 1wb1_A 80 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMK 151 (482)
T ss_dssp CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHH
Confidence 7888774 56678999999999999988 55665443 2222 35888999999999742211 123344
Q ss_pred HHhhhc----CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 75 STAVKY----NCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 75 ~~~~~~----~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.++... ++.++++||++|. |+++++++|.+.+.
T Consensus 152 ~~l~~~~~~~~~~ii~vSA~~g~-gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 152 SILQSTHNLKNSSIIPISAKTGF-GVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHSSSGGGCCEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred HHHhhhcccccceEEEEECcCCC-CHHHHHHHHHHhhc
Confidence 455444 4679999999999 99999999998775
No 153
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.22 E-value=9.9e-11 Score=98.92 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=70.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD------- 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~------- 69 (173)
|||++++ ++..+++.+|++|+|||+++ +++++.+.. +.. .++|+++|+||+|+.......
T Consensus 77 TPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e 148 (594)
T 1g7s_A 77 TPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEGRPFME 148 (594)
T ss_dssp CCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccCCchHH
Confidence 8999885 77788999999999999999 778765542 222 468999999999986422100
Q ss_pred ------HH----------HH-HHHhhh--------------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 70 ------ES----------LG-RSTAVK--------------YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 70 ------~~----------~~-~~~~~~--------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.. +. ..+... ..++++++||++|. ||++++++|...+.
T Consensus 149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~-GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE-GIPELLTMLMGLAQ 217 (594)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC-CchhHHHHHHhhcc
Confidence 00 01 111110 12368999999999 99999999998765
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.21 E-value=1.2e-10 Score=97.31 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|||++++ .+..+++.+|++|+|+|.++..+......|. .+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence 8999985 7778999999999999999876666665553 3333 4689999999999864
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.21 E-value=2.9e-11 Score=96.85 Aligned_cols=100 Identities=6% Similarity=-0.015 Sum_probs=73.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEe-CCCCCCCccCCH--HHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLAN-KLDLEHLRQVDE--SLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~N-K~Dl~~~~~v~~--~~~~~ 75 (173)
|||++++ ....+++.+|++|+|+| + ...+.+...|+..+... ++|. |+|+| |+|+ +...+.. ++...
T Consensus 67 tPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~ 139 (370)
T 2elf_A 67 AHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKV 139 (370)
T ss_dssp CTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHH
Confidence 8999986 44567899999999999 4 34556666676666553 4777 88899 9999 4332222 44555
Q ss_pred HhhhcC---CeEEE--EcccC---CcccHHHHHHHHHHHHhc
Q psy2792 76 TAVKYN---CTFHE--VSVAD---NSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~~~~---~~~~e--~Sak~---g~~~v~~lf~~l~~~i~~ 109 (173)
++...+ +++++ +||++ +. |++++|+.|.+.+..
T Consensus 140 ~l~~~~~~~~~ii~~~~SA~~~~~g~-gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 140 ITSGTVLQDWECISLNTNKSAKNPFE-GVDELKARINEVAEK 180 (370)
T ss_dssp HTTTSTTTTCEEEECCCCTTSSSTTT-THHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEecccccccCcCCC-CHHHHHHHHHhhccc
Confidence 555543 68999 99999 99 999999999887654
No 156
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.19 E-value=8.3e-11 Score=96.09 Aligned_cols=93 Identities=15% Similarity=-0.003 Sum_probs=67.1
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-----HHhhhcCCeEE
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-----STAVKYNCTFH 85 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~ 85 (173)
..+++.+|++++|+|+++..++.+. .+...+.. .++|+++|+||+|+.+.+....++.. .++...+.+++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 3578899999999999986665542 22233332 46899999999999765544443332 22223357899
Q ss_pred EEcccCCcccHHHHHHHHHHHHhc
Q psy2792 86 EVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++||++|. ||+++|+.+.+.+..
T Consensus 333 ~~SA~~g~-gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 333 FTSADKGW-NIDRMIDAMNLAYAS 355 (439)
T ss_dssp ECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred EEECCCCC-CHHHHHHHHHHHHHh
Confidence 99999999 999999999987655
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.19 E-value=8.4e-12 Score=101.93 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=69.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCC-cEEEEEeCCCCCCCc------cCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNV-PVMLLANKLDLEHLR------QVD 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~-piilv~NK~Dl~~~~------~v~ 69 (173)
|||++++ ....++..+|++|+|||+++ .+|+.+..|..+..++.. ..++ |+|+|+||+|+.+.. ...
T Consensus 91 tpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~ 169 (435)
T 1jny_A 91 APGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEI 169 (435)
T ss_dssp CSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred CCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHH
Confidence 8999985 66778999999999999998 788866554433333210 1234 689999999997521 111
Q ss_pred HHHHHHHhhhcC-----CeEEEEcccCCcccHHHHHH
Q psy2792 70 ESLGRSTAVKYN-----CTFHEVSVADNSPAIYQAFD 101 (173)
Q Consensus 70 ~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~lf~ 101 (173)
.++...++...+ +.++++||++|. ||.+++.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~i~iSA~~g~-~v~e~~~ 205 (435)
T 1jny_A 170 VDQVSKFMRSYGFNTNKVRFVPVVAPSGD-NITHKSE 205 (435)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEECBTTTTB-TTTBCCS
T ss_pred HHHHHHHHHHcCCCcCCceEEEeecccCc-ccccccc
Confidence 344556666655 679999999999 9986654
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.18 E-value=7e-11 Score=94.42 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=70.4
Q ss_pred hhcccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHhhhc---CCeEE
Q psy2792 12 AMICWADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTAVKY---NCTFH 85 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~~~~---~~~~~ 85 (173)
.++..+|++++|+|++++. +++.+..|...+.... ..+.|+|+|+||+|+.+..... ...+..++... +..++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence 3588999999999999876 6666666766555543 3578999999999986532100 11222233443 34689
Q ss_pred EEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 86 EVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
++||+++. |++++++.|.+.+....
T Consensus 332 ~~SA~~g~-gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 332 PISALKRT-NLELLRDKIYQLATQLS 356 (364)
T ss_dssp ECBTTTTB-SHHHHHHHHHHHHHHHC
T ss_pred EEECCCCc-CHHHHHHHHHHHhcccC
Confidence 99999999 99999999998776533
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.18 E-value=2.5e-11 Score=98.19 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=73.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC---CHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV---DESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~ 75 (173)
|||++++ ....++..+|++|+|+|+++... .+...|+..+.. .++| +++|+||+|+.+.... ..++...
T Consensus 82 tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 82 CPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 8999885 66678999999999999988643 344556655554 3578 8999999999742211 1224455
Q ss_pred HhhhcC-----CeEEEEcccCCccc------------------HHHHHHHHHHHHhc
Q psy2792 76 TAVKYN-----CTFHEVSVADNSPA------------------IYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g~~~------------------v~~lf~~l~~~i~~ 109 (173)
++...+ ++++++||++|. | +.++++.|...+..
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~-~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLAL-EQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHH-HHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhcccccCCCEEEccHHHhh-hhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 665555 579999999998 7 77888888776653
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.18 E-value=5.5e-11 Score=96.35 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=69.8
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID----KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLG 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~ 73 (173)
|+|++++ .....+..+|++|+|+|+++ +++++.+..| ... ...|+|+|+||+|+.+... ...++.
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII---GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 6787664 33344667899999999984 4566655433 222 2357999999999975321 112344
Q ss_pred HHHhhh---cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 74 RSTAVK---YNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 74 ~~~~~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
..++.. .+++++++||++|. ||+++|++|...+..
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~-gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGA-NIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTB-SHHHHHHHHHHHSCC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCC-CHHHHHHHHHHhCCC
Confidence 455543 35789999999999 999999999987754
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.16 E-value=7.3e-11 Score=97.55 Aligned_cols=94 Identities=15% Similarity=0.009 Sum_probs=59.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-----HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-----VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG- 73 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~- 73 (173)
|||++++ ....++.++|++|+|||+++..++..+ ..+...+.... ...|+|||+||+|+.+.++...++.
T Consensus 118 TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~ 195 (483)
T 3p26_A 118 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIK 195 (483)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHHHHHHH
Confidence 8999885 677899999999999999986544321 11222222222 2346999999999975333222222
Q ss_pred ---HHHhhhc-----CCeEEEEcccCCcccHHH
Q psy2792 74 ---RSTAVKY-----NCTFHEVSVADNSPAIYQ 98 (173)
Q Consensus 74 ---~~~~~~~-----~~~~~e~Sak~g~~~v~~ 98 (173)
..+.... ++.++++||++|. ||++
T Consensus 196 ~~~~~~l~~~g~~~~~~~~i~iSA~~g~-gi~e 227 (483)
T 3p26_A 196 SKLLPYLVDIGFFEDNINWVPISGFSGE-GVYK 227 (483)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECCSSSCT-TSSS
T ss_pred HHHHHHHHHcCCCcccceEEEEeeecCC-Cccc
Confidence 2233332 3579999999999 9875
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.14 E-value=2.3e-11 Score=101.52 Aligned_cols=100 Identities=18% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCCHHHHHHH-
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVDESLGRST- 76 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~~~~~- 76 (173)
|||++++ ++..++..+|++|+|||+++.........| ..+.. .++|+++|+||+|+.+.. .+..+ ...+
T Consensus 59 TPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~-l~~~~ 132 (537)
T 3izy_P 59 TPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKE-LLAYD 132 (537)
T ss_dssp CSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSH-HHHTT
T ss_pred CCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHH-HHhhh
Confidence 8999884 778899999999999999985544433332 22322 468999999999996432 12111 1111
Q ss_pred --hhhc--CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 77 --AVKY--NCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 77 --~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+..+ .+.++++||++|. |++++|++|...+.
T Consensus 133 ~~~e~~~~~~~iv~vSAktG~-GI~eLle~I~~l~~ 167 (537)
T 3izy_P 133 VVCEDYGGDVQAVHVSALTGE-NMMALAEATIALAE 167 (537)
T ss_dssp SCCCCSSSSEEECCCCSSSSC-SSHHHHHHHHHHHT
T ss_pred hhHHhcCCCceEEEEECCCCC-CchhHHHHHHHhhh
Confidence 2222 2579999999999 99999999998765
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.13 E-value=5.1e-11 Score=96.18 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=71.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC---CHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV---DESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~ 75 (173)
|||++++ ....++..+|++|+|+|+++....+....| ..+.. .++| +|+|+||+|+.+.... ..++...
T Consensus 73 tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~ 147 (397)
T 1d2e_A 73 CPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRE 147 (397)
T ss_dssp CSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHH
Confidence 7899874 566789999999999999984333222333 33333 3578 7899999999742211 1234555
Q ss_pred HhhhcC-----CeEEEEcccCCccc----------HHHHHHHHHHHHhc
Q psy2792 76 TAVKYN-----CTFHEVSVADNSPA----------IYQAFDHLLTESRG 109 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g~~~----------v~~lf~~l~~~i~~ 109 (173)
++..++ ++++++||++|. | +.++|+.|.+.+..
T Consensus 148 ~l~~~~~~~~~~~~i~~SA~~g~-n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 148 LLTEFGYKGEETPIIVGSALCAL-EQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHH-TTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCCcccCcEEEeehhhcc-cccCCCccCCcHHHHHHHHHHhCCC
Confidence 666655 579999999976 5 89999999887654
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.13 E-value=3e-11 Score=98.61 Aligned_cols=93 Identities=13% Similarity=0.012 Sum_probs=66.0
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-cEEEEEeCCCCCCCcc--C--CHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNV-PVMLLANKLDLEHLRQ--V--DESLGR 74 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~NK~Dl~~~~~--v--~~~~~~ 74 (173)
|||++++ ....++..+|++|+|+|+++.. +.+...|+..+... ++ |+|+|+||+|+.+... + ..++..
T Consensus 111 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~----~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 185 (434)
T 1zun_B 111 TPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL----GIKHIVVAINKMDLNGFDERVFESIKADYL 185 (434)
T ss_dssp CCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT----TCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc----CCCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence 8999885 6667899999999999998853 23334454444432 34 6999999999975211 1 123455
Q ss_pred HHhhhcC-----CeEEEEcccCCcccHHHHH
Q psy2792 75 STAVKYN-----CTFHEVSVADNSPAIYQAF 100 (173)
Q Consensus 75 ~~~~~~~-----~~~~e~Sak~g~~~v~~lf 100 (173)
.++..++ +.++++||++|. ||+++|
T Consensus 186 ~~~~~~g~~~~~~~~i~vSA~~g~-gi~~~~ 215 (434)
T 1zun_B 186 KFAEGIAFKPTTMAFVPMSALKGD-NVVNKS 215 (434)
T ss_dssp HHHHTTTCCCSEEEEEECCTTTCT-TTSSCC
T ss_pred HHHHHhCCCccCceEEEEeccCCC-Cccccc
Confidence 5666666 679999999999 998854
No 165
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.6e-10 Score=83.35 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=54.1
Q ss_pred CCCCCCc--cHhhhccc----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh---CCCCCcEEEEEeCCCCCCCcc
Q psy2792 2 TIGLTEG--TLTAMICW----ADGCIIVYSLI-DKESFDYAVSTLQNLQRHR---AVNNVPVMLLANKLDLEHLRQ 67 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~----ad~iilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~ 67 (173)
|+|+++. .+..|+.+ +|++|+|||++ +.++|..+..|+..+.... ...++|+++|+||+|+.+.+.
T Consensus 98 t~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 98 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp ETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 7898873 67777776 99999999999 8999999999988876543 125799999999999976544
No 166
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=2e-10 Score=91.99 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=69.0
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC--
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC-- 82 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~-- 82 (173)
+.++++..++++|+|+|++++.+ .|..++.+.. .+.|+++|+||+||... .+..+.... ++...|+
T Consensus 64 ~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 64 MLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCc
Confidence 67788899999999999999763 4666666654 47899999999999653 233333333 3556676
Q ss_pred -eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 83 -TFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 83 -~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++.+||++|. |++++++.+.+..
T Consensus 136 ~~v~~iSA~~g~-gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 136 VDVCLVSAAKGI-GMAKVMEAINRYR 160 (369)
T ss_dssp SEEEECBTTTTB-THHHHHHHHHHHH
T ss_pred ccEEEEECCCCC-CHHHHHHHHHhhc
Confidence 68999999999 9999999987654
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.09 E-value=1.7e-11 Score=100.93 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=58.2
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCc------cCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLR------QVD 69 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~------~v~ 69 (173)
|||++++ ....++..+|++|+|||+++. .+|+....|.+.+.... ..++| +|||+||+|+.... ...
T Consensus 128 tPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~~~~~~~~~i 206 (467)
T 1r5b_A 128 APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEPSVQWSEERYKEC 206 (467)
T ss_dssp CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTSTTCSSCHHHHHHH
T ss_pred CCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCCCccccHHHHHHH
Confidence 8999885 566778999999999999985 34442223332222211 14577 99999999995311 011
Q ss_pred HHHHHHHhhhc-------CCeEEEEcccCCcccHHHHH
Q psy2792 70 ESLGRSTAVKY-------NCTFHEVSVADNSPAIYQAF 100 (173)
Q Consensus 70 ~~~~~~~~~~~-------~~~~~e~Sak~g~~~v~~lf 100 (173)
.++...++... ++.++++||++|. |+.++|
T Consensus 207 ~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~-~i~~l~ 243 (467)
T 1r5b_A 207 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ-NVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHCCCHHHHEEEEECBTTTTB-TTSSCC
T ss_pred HHHHHHHHHHhcCCCccCCceEEeccccccc-cccccc
Confidence 22345555554 3569999999999 998766
No 168
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.07 E-value=1.7e-10 Score=87.57 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=60.6
Q ss_pred hcccCcEEEEEEeCCChhhH-HHHHHHHHHHHhhhCCCCCcEEEEEe-CCCCCCCccCCH-------HHHHHHhhhcCCe
Q psy2792 13 MICWADGCIIVYSLIDKESF-DYAVSTLQNLQRHRAVNNVPVMLLAN-KLDLEHLRQVDE-------SLGRSTAVKYNCT 83 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~N-K~Dl~~~~~v~~-------~~~~~~~~~~~~~ 83 (173)
+++++|++|+|||+++.... ..+..|+.++.... ...|+++|.| |+|+... .+.. .++..++...+..
T Consensus 102 ~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 178 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGR 178 (260)
T ss_dssp HTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred cCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCe
Confidence 78999999999999863222 22223433332211 1345555555 9999743 2211 2233455555432
Q ss_pred ---E--EEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 84 ---F--HEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 84 ---~--~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
+ +++||+++. |++++|.+|.+.+....
T Consensus 179 ~~~~~~~~~SA~~~~-gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 179 ICAFNNRAEGSNQDD-QVKELMDCIEDLLMEKN 210 (260)
T ss_dssp EEECCTTCCHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred EEEecCcccccccHH-HHHHHHHHHHHHHHhCC
Confidence 2 789999999 99999999999988765
No 169
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.07 E-value=2.2e-10 Score=93.72 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=62.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCc------
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKES---FD---YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLR------ 66 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~------ 66 (173)
|||++++ ....++.+||++|+|+|+++... |+ +....+..+.. .++| +|+|+||+|+....
T Consensus 102 TPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~~ 177 (439)
T 3j2k_7 102 APGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNERY 177 (439)
T ss_pred CCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHHH
Confidence 8999885 66678999999999999988421 21 11222222222 3466 99999999985311
Q ss_pred cCCHHHHHHHhhhcC------CeEEEEcccCCcccHHHHHH
Q psy2792 67 QVDESLGRSTAVKYN------CTFHEVSVADNSPAIYQAFD 101 (173)
Q Consensus 67 ~v~~~~~~~~~~~~~------~~~~e~Sak~g~~~v~~lf~ 101 (173)
+...++...++...+ +.++++||++|. |++++++
T Consensus 178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~-ni~~l~~ 217 (439)
T 3j2k_7 178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA-NLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHhcccccCCeeEEEeeccCCc-ccccccc
Confidence 011223344444444 469999999999 9999655
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.6e-11 Score=98.03 Aligned_cols=94 Identities=12% Similarity=0.101 Sum_probs=59.5
Q ss_pred hhcccCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHH
Q psy2792 12 AMICWADGC-----------IIVYSLID-KESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRST 76 (173)
Q Consensus 12 ~y~~~ad~i-----------ilv~d~~~-~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~ 76 (173)
.|+++++++ ++||++++ ..++..+. .|+..+ ..++|+|+|+||+|+...+++.. +++..+
T Consensus 128 ~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~ 202 (361)
T 2qag_A 128 RYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDE 202 (361)
T ss_dssp HHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 777776654 37777765 44566554 354443 25689999999999976555544 467777
Q ss_pred hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~ 112 (173)
+..+++.+|++||+++. + ++.|.++...+.+..+
T Consensus 203 ~~~~~i~~~~~Sa~~~~-~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 203 IEEHNIKIYHLPDAESD-E-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp TTCC-CCSCCCC-----------CHHHHHHHHHTCS
T ss_pred HHHCCCCEEeCCCcCCC-c-chhHHHHHHHHHhcCC
Confidence 88889999999999999 8 8899999888876544
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.06 E-value=4.4e-11 Score=99.10 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCCHHH--
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVDESL-- 72 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~~-- 72 (173)
|||++++ ++..++..+|++|+|||+++ +++++.+ ..+.. .++|+|+|+||+|+.+. ..+..+.
T Consensus 58 TPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~ 129 (501)
T 1zo1_I 58 TPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQ 129 (501)
T ss_dssp CCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCC
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHHHHHHHHH
Confidence 8999885 66778999999999999988 4454433 22222 46899999999999642 1111110
Q ss_pred HHHHhhhcC--CeEEEEcccCCcccHHHHHHHHHH
Q psy2792 73 GRSTAVKYN--CTFHEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 73 ~~~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~ 105 (173)
...++..++ ++++++||++|. ||+++|++|..
T Consensus 130 ~~~~~~~~~~~~~~v~vSAktG~-gI~eLle~I~~ 163 (501)
T 1zo1_I 130 YGILPEEWGGESQFVHVSAKAGT-GIDELLDAILL 163 (501)
T ss_dssp CCCCTTCCSSSCEEEECCTTTCT-TCTTHHHHTTT
T ss_pred hhhhHHHhCCCccEEEEeeeecc-Ccchhhhhhhh
Confidence 011122333 689999999999 99999999875
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.04 E-value=6.8e-11 Score=91.31 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=63.1
Q ss_pred cHhhhcccCcEEE-EEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh--cC-CeE
Q psy2792 9 TLTAMICWADGCI-IVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK--YN-CTF 84 (173)
Q Consensus 9 ~~~~y~~~ad~ii-lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~-~~~ 84 (173)
+...|+++++.+| +|+|.++..+......|+..+.. .+.|+++|+||+|+.+......+........ .+ ..+
T Consensus 154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 154 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 6667899999777 79999875444433345544432 4689999999999975444223322211111 13 357
Q ss_pred EEEcccCCcccHHHHHHHHHHH
Q psy2792 85 HEVSVADNSPAIYQAFDHLLTE 106 (173)
Q Consensus 85 ~e~Sak~g~~~v~~lf~~l~~~ 106 (173)
+++||++|. |++++|++|...
T Consensus 230 ~~~SA~~~~-gi~~l~~~l~~~ 250 (299)
T 2aka_B 230 VNRSQKDID-GKKDITAALAAE 250 (299)
T ss_dssp CCCCCBCTT-SCBCHHHHHHHH
T ss_pred ECCChhhcc-ccccHHHHHHHH
Confidence 899999999 999999999863
No 173
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.1e-10 Score=99.08 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=60.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH---
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SFD---YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--- 70 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--- 70 (173)
|||++++ ....+++++|++|+|+|+++.. +|. .....+..+.. . ...|+|||+||+|+.+......
T Consensus 252 TPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-l--gi~~iIVVvNKiDl~~~~~~~~~ei 328 (611)
T 3izq_1 252 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L--GIHNLIIAMNKMDNVDWSQQRFEEI 328 (611)
T ss_dssp CCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-T--TCCEEEEEEECTTTTTTCHHHHHHH
T ss_pred CCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-c--CCCeEEEEEecccccchhHHHHHHH
Confidence 8999885 6677899999999999998742 111 11111111221 1 2235999999999975322212
Q ss_pred -HHHHHHhhhcC-----CeEEEEcccCCcccHHHH
Q psy2792 71 -SLGRSTAVKYN-----CTFHEVSVADNSPAIYQA 99 (173)
Q Consensus 71 -~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~l 99 (173)
++...++...+ +.+++|||++|. ||.++
T Consensus 329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~-gI~el 362 (611)
T 3izq_1 329 KSKLLPYLVDIGFFEDNINWVPISGFSGE-GVYKI 362 (611)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEECCTTTCT-TTSSC
T ss_pred HHHHHHHHHhhcccccCccEEeeecccCC-Ccccc
Confidence 22333343333 579999999999 99876
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.02 E-value=2.5e-10 Score=101.92 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=72.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC---CHHHHHH
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV---DESLGRS 75 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~ 75 (173)
|||++++ ....++..+|++|+|+|+++... .+...|+..+... ++| +|||+||+|+.+.... ..+++..
T Consensus 366 TPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l----gIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 366 CPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV----GVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH----TCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc----CCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 7899885 55678999999999999998532 2334455545442 478 7899999999742211 1234555
Q ss_pred HhhhcC-----CeEEEEcccCC--------cccHHHHHHHHHHHHh
Q psy2792 76 TAVKYN-----CTFHEVSVADN--------SPAIYQAFDHLLTESR 108 (173)
Q Consensus 76 ~~~~~~-----~~~~e~Sak~g--------~~~v~~lf~~l~~~i~ 108 (173)
++...+ ++++++||++| . ||.++|+.|...+.
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~e-GI~eLleaL~~~Ip 485 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEA-KILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHH-HHHHHHHHHHHTSC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccc-cchhhHhHHhhhcC
Confidence 666655 57999999999 5 79999999887664
No 175
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.99 E-value=2.3e-10 Score=93.88 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=60.0
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEV 87 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 87 (173)
....|+++||++|+|+|..+. +.....|+.++... .++|++||+||+|+.+.. ....++. ..++ .++++
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~i 164 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPI 164 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEEEC
T ss_pred HHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEe
Confidence 667889999999999998764 33334455444432 578999999999986322 1111121 2232 46899
Q ss_pred cccCCcccHHHHHHHHHHHHhc
Q psy2792 88 SVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 88 Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
||++|. |+.++|+.+.+.+..
T Consensus 165 SA~~g~-gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 165 SGTHGL-GLGDLLDAVAEHFKN 185 (456)
T ss_dssp CTTTCT-THHHHHHHHHTTGGG
T ss_pred eccccc-chHHHHHHHHhhccc
Confidence 999999 999999999887754
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.98 E-value=1.8e-10 Score=94.60 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=62.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCcc----C
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SFD---YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQ----V 68 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~----v 68 (173)
|||++++ ....++..+|++|+|+|+++.. +|+ +...++..+.. .++| +|+|+||+|+.+... .
T Consensus 92 tPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~~~~ 167 (458)
T 1f60_A 92 APGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQE 167 (458)
T ss_dssp CCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHHH
T ss_pred CCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHHHHH
Confidence 8999885 6677899999999999998752 332 22223333332 3465 999999999963111 1
Q ss_pred CHHHHHHHhhhcC-----CeEEEEcccCCcccHHHH
Q psy2792 69 DESLGRSTAVKYN-----CTFHEVSVADNSPAIYQA 99 (173)
Q Consensus 69 ~~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~l 99 (173)
..++...++..++ +.++++||++|. |+.++
T Consensus 168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~-nv~~~ 202 (458)
T 1f60_A 168 IVKETSNFIKKVGYNPKTVPFVPISGWNGD-NMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEECCTTTCB-TTTBC
T ss_pred HHHHHHHHHHHcCCCccCceEEEeecccCc-Ccccc
Confidence 1233445555555 579999999999 98754
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.97 E-value=2.7e-09 Score=86.56 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=72.1
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN 92 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 92 (173)
+..++.+|+|+|++ ..++.++..|..++..+.. ....|.+||+||+|+... . ..+.....+...++.++.+||+++
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCc
Confidence 34699999999998 5678888888777766531 125799999999998653 1 123344455556788999999999
Q ss_pred cccHHHHHHHHHHHHhcCCC
Q psy2792 93 SPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 93 ~~~v~~lf~~l~~~i~~~~~ 112 (173)
. ||+++|++|.+.+.+...
T Consensus 310 ~-gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 310 A-GLPALKEALHALVRSTPP 328 (416)
T ss_dssp T-THHHHHHHHHHHHHTSCC
T ss_pred c-CHHHHHHHHHHHHHhccc
Confidence 9 999999999999987543
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.96 E-value=5.2e-10 Score=96.21 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCCCCC-----ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH-----
Q psy2792 2 TIGLTE-----GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES----- 71 (173)
Q Consensus 2 TaG~e~-----~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~----- 71 (173)
|||+.+ ..+..|+.+||++|+|+|.+++.++.+...|...+.. .+.|+++|+||+|+.....++.+
T Consensus 181 TPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l 256 (695)
T 2j69_A 181 SPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDPDDVEEL 256 (695)
T ss_dssp CCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSSTTCHHHH
T ss_pred CCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccChhhHHHH
Confidence 788765 2667899999999999999988787777666554433 35789999999998654322211
Q ss_pred -----HHH-----HHhhh--------cCCeEEEEccc--------------CCcccHHHHHHHHHHHHhc
Q psy2792 72 -----LGR-----STAVK--------YNCTFHEVSVA--------------DNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 72 -----~~~-----~~~~~--------~~~~~~e~Sak--------------~g~~~v~~lf~~l~~~i~~ 109 (173)
... .+... ....+|+|||+ ++. |+++++..|.+.+..
T Consensus 257 ~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~-Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 257 QASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT-GFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc-CHHHHHHHHHHHHHH
Confidence 111 11111 12358999999 999 999999999987765
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.94 E-value=2.9e-09 Score=91.18 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=43.6
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|++++ ....+++.+|++++|+|.++...... ..|+..+.. .++|+++|+||+|+.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 8999884 77889999999999999887543332 344444444 358999999999986
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.87 E-value=8.2e-10 Score=87.91 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=66.0
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
+...|+.++|++|+|+|.++.+... ..|+..+.... ..+.|+|+|+||+|+.+......+....+...++..|+++|
T Consensus 165 ~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 241 (360)
T 3t34_A 165 MVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVV 241 (360)
T ss_dssp HHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEEC
T ss_pred HHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEE
Confidence 6678999999999999876543322 33444444443 35689999999999976555555555555556678899999
Q ss_pred ccCCcccHHHHHHHHH
Q psy2792 89 VADNSPAIYQAFDHLL 104 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~ 104 (173)
++++. ++++.+..+.
T Consensus 242 ~~s~~-~i~~~~~~~~ 256 (360)
T 3t34_A 242 NRSQA-DINKNVDMIA 256 (360)
T ss_dssp CCCHH-HHHTTCCHHH
T ss_pred ECChH-HhccCCCHHH
Confidence 99998 8887665433
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.86 E-value=9.1e-09 Score=77.11 Aligned_cols=96 Identities=6% Similarity=-0.068 Sum_probs=62.1
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCC------HHHHHHHhhhcCCe
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVD------ESLGRSTAVKYNCT 83 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~------~~~~~~~~~~~~~~ 83 (173)
..++.++|++|+|+|+++.... ...|+..+..... ....|++||+||+|+.....+. .+....+++..+..
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSS
T ss_pred HhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE
Confidence 3456788999999998764331 1234444432210 0236999999999986554443 23566777888877
Q ss_pred EEEEcccCC-----cccHHHHHHHHHHHHhc
Q psy2792 84 FHEVSVADN-----SPAIYQAFDHLLTESRG 109 (173)
Q Consensus 84 ~~e~Sak~g-----~~~v~~lf~~l~~~i~~ 109 (173)
|+.+++..+ . +|.++|..+...+.+
T Consensus 185 ~~~~~~~~~~~~~~~-~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEA-QRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHH-HHHHHHHHHHHHHHH
Confidence 887776644 6 899999999887765
No 182
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.86 E-value=3e-09 Score=78.47 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=59.7
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCC
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADN 92 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g 92 (173)
..++.+|+|+|+++... ....+.. .. +.|+++|+||+|+.+......++...++... ++.++++||++|
T Consensus 128 ~~~~~~i~vvd~~~~~~--~~~~~~~---~~----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g 198 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDD--VVEKHPE---IF----RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTG 198 (221)
T ss_dssp CSCSEEEEEEEGGGCTT--HHHHCHH---HH----HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTT
T ss_pred cccCcEEEEEeCCCcch--hhhhhhh---hh----hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCC
Confidence 46788999999876532 1111111 11 3789999999998643334556665555543 478999999999
Q ss_pred cccHHHHHHHHHHHHhc
Q psy2792 93 SPAIYQAFDHLLTESRG 109 (173)
Q Consensus 93 ~~~v~~lf~~l~~~i~~ 109 (173)
. |++++|++|.+.+..
T Consensus 199 ~-gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 199 K-GFEEWIDFLRGILNV 214 (221)
T ss_dssp B-THHHHHHHHHHHHC-
T ss_pred C-CHHHHHHHHHHHHHH
Confidence 9 999999999987754
No 183
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=4.1e-09 Score=81.41 Aligned_cols=94 Identities=13% Similarity=-0.000 Sum_probs=66.4
Q ss_pred CCCCCc---cHhhhcccCcEEEEEEeCCChhhHH--HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792 3 IGLTEG---TLTAMICWADGCIIVYSLIDKESFD--YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77 (173)
Q Consensus 3 aG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 77 (173)
+|.... ....++.++|++|+|+|+.++.++. .+..|+ .+.|+++|+||+||.+... .+....+.
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~~~~~ 75 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQWKEHF 75 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHHHHHH
Confidence 455442 3445789999999999999987664 333332 4689999999999964211 11223344
Q ss_pred hhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+..++.++.+||+++. |+++++..+.+.+.
T Consensus 76 ~~~g~~~i~iSA~~~~-gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQ-GLNQIVPASKEILQ 105 (282)
T ss_dssp HTTTCCEEECCTTTCT-TGGGHHHHHHHHHH
T ss_pred HhcCCcEEEEECCCcc-cHHHHHHHHHHHHH
Confidence 4557889999999999 99999988877664
No 184
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.80 E-value=1.3e-09 Score=83.56 Aligned_cols=86 Identities=9% Similarity=0.084 Sum_probs=48.2
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhhcCCeEEEEcccCCcc
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVKYNCTFHEVSVADNSP 94 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~~~~~e~Sak~g~~ 94 (173)
+|+++++++.+.......-..++..+.. ++|+|+|+||+|+....++.. +.........++.++++||+++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~- 189 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE- 189 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCCh-
Confidence 8899999987763222222334444432 689999999999864322211 22344455678889999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy2792 95 AIYQAFDHLLTESR 108 (173)
Q Consensus 95 ~v~~lf~~l~~~i~ 108 (173)
|+++++.+|.+.+.
T Consensus 190 ~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 190 EENKLVKKIKDRLP 203 (274)
T ss_dssp -----CHHHHHTCS
T ss_pred hHHHHHHHHhcCCC
Confidence 99999999987653
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.78 E-value=3.8e-08 Score=84.60 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|+.++ .+..+++.+|++|+|+|.++..++.....|.. +.. .++|+++|+||+|+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 8999884 77889999999999999999877777666654 333 3689999999999864
No 186
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.77 E-value=2.1e-08 Score=75.77 Aligned_cols=94 Identities=10% Similarity=-0.016 Sum_probs=62.1
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCcc------CCHHHHHHHhhhcCCeEE
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQ------VDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~------v~~~~~~~~~~~~~~~~~ 85 (173)
+.++|++|+|+|+++.... ...++..+....+ ..+.|+|||+||+|+.+... ...+....+.+..+..|+
T Consensus 103 ~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~ 180 (247)
T 3lxw_A 103 APGPHALLLVTQLGRFTAQ--DQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVC 180 (247)
T ss_dssp TTCCSEEEEEEETTBCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEEeCCCCCHH--HHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEE
Confidence 3999999999999853211 1223334443321 12689999999999965321 011335667777777776
Q ss_pred EEcccC-----CcccHHHHHHHHHHHHhcC
Q psy2792 86 EVSVAD-----NSPAIYQAFDHLLTESRGG 110 (173)
Q Consensus 86 e~Sak~-----g~~~v~~lf~~l~~~i~~~ 110 (173)
.+++.. +. ||++|+..|.+.+.+.
T Consensus 181 ~~~~~~~~~~~~~-~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 181 AFDNRATGREQEA-QVEQLLGMVEGLVLEH 209 (247)
T ss_dssp ECCTTCCHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred EEeCCCCccccHH-HHHHHHHHHHHHHHHc
Confidence 666554 57 9999999999988863
No 187
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.77 E-value=6.2e-08 Score=80.91 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|||++++ ....+++.+|++|+|+|+++.... |...+.......++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 8999884 667899999999999999875322 222222222235799999999999864
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.77 E-value=1.6e-08 Score=78.53 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=61.7
Q ss_pred cHhhhcccCcEEEEEEeCCChhhH-HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESF-DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 87 (173)
....|+.++|++|+|+|.++.... .....+...+. ..+.|+++|+||+|+........+.........+..|+++
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 235 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGV 235 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEEC
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEE
Confidence 566789999999999997543211 11112222232 2468999999999997544322222221111222556776
Q ss_pred ccc---C---CcccHHHHHHHHHHHHhcCCC
Q psy2792 88 SVA---D---NSPAIYQAFDHLLTESRGGPP 112 (173)
Q Consensus 88 Sak---~---g~~~v~~lf~~l~~~i~~~~~ 112 (173)
|+. + +. |+.+++..+...+...+.
T Consensus 236 ~~~sa~~~~~~~-gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 236 INRSQEDIIAKK-SIRESLKSEILYFKNHPI 265 (315)
T ss_dssp CCCCHHHHSSSC-CHHHHHHHHHHHHHTCTT
T ss_pred ecCChhhhccCC-CHHHHHHHHHHHHhCCCc
Confidence 655 4 67 899999999988877554
No 189
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.74 E-value=2.6e-08 Score=72.61 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=60.8
Q ss_pred ccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHhhhcC--CeEEEEc
Q psy2792 15 CWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTAVKYN--CTFHEVS 88 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~~~~~--~~~~e~S 88 (173)
..+|++++|+|+++..++.. +..|+. . .++|+++|+||+|+.+..+ ...+.+..++...+ +.++++|
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~S 179 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAV---D----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS 179 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECB
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHH---H----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence 57899999999998655432 233332 2 4589999999999864321 11234445555544 5688999
Q ss_pred ccCCcccHHHHHHHHHHHHhc
Q psy2792 89 VADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 89 ak~g~~~v~~lf~~l~~~i~~ 109 (173)
|+++. |++++++.|.+.+.+
T Consensus 180 al~~~-~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 180 SLKKQ-GVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTTTB-SHHHHHHHHHHHHC-
T ss_pred ecCCC-CHHHHHHHHHHHHhh
Confidence 99999 999999999887654
No 190
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.71 E-value=8.4e-09 Score=78.02 Aligned_cols=101 Identities=10% Similarity=-0.047 Sum_probs=61.4
Q ss_pred CCCCCCccHh--------hhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792 2 TIGLTEGTLT--------AMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70 (173)
Q Consensus 2 TaG~e~~~~~--------~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 70 (173)
|+|+.+.... .++.+ +++|+|+|... +..+.....+....... .++|+++|+||+|+.....+
T Consensus 116 tpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~~~~~~-- 189 (262)
T 1yrb_A 116 TPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSEEEK-- 189 (262)
T ss_dssp CCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCHHHH--
T ss_pred CCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccccccccH--
Confidence 7787653111 24566 88888888754 33333222222111111 35899999999998643221
Q ss_pred HHHHHH----------------------------hhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 71 SLGRST----------------------------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 71 ~~~~~~----------------------------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
++...+ +..++ ..++++||+++. |++++|++|.+.+..
T Consensus 190 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~-gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 190 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE-GFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc-cHHHHHHHHHHHhcc
Confidence 111111 23333 478999999999 999999999987764
No 191
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.69 E-value=4.3e-09 Score=88.96 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=57.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV 68 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v 68 (173)
|||++++ ....++..+|++|+|+|+++. ++.+.+ ..+.. .++| +|||+||+|+.+....
T Consensus 262 TPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~----lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 262 APGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA----LGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp EESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH----SSCCCEEEEEECGGGGTTCHH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH----cCCCeEEEEEeccccccccHH
Confidence 7899885 566788999999999999853 333322 22222 2465 9999999998642110
Q ss_pred ----CHHHHHHHh-hhcCC-----eEEEEcccCCcccHH--------------HHHHHHHHHH
Q psy2792 69 ----DESLGRSTA-VKYNC-----TFHEVSVADNSPAIY--------------QAFDHLLTES 107 (173)
Q Consensus 69 ----~~~~~~~~~-~~~~~-----~~~e~Sak~g~~~v~--------------~lf~~l~~~i 107 (173)
...+...+. ...++ .++++||++|. ||. .|++.|...+
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~-gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT-NLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS-SSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc-ccccccccccccccchHHHHHHHHhhc
Confidence 012333344 44454 69999999999 998 6777665543
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.69 E-value=5.2e-09 Score=83.20 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=62.4
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh---
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV--- 78 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~--- 78 (173)
|||.... ....+..+|++|+|+|.+..+.+..+..+ ..+.|+++|+||+|+....... .....+..
T Consensus 179 TpGi~~~-~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---------~~~~p~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~ 247 (355)
T 3p32_A 179 TVGVGQS-EVAVANMVDTFVLLTLARTGDQLQGIKKG---------VLELADIVVVNKADGEHHKEAR-LAARELSAAIR 247 (355)
T ss_dssp ECSCSSH-HHHHHTTCSEEEEEEESSTTCTTTTCCTT---------SGGGCSEEEEECCCGGGHHHHH-HHHHHHHHHHH
T ss_pred CCCCCcH-HHHHHHhCCEEEEEECCCCCccHHHHHHh---------HhhcCCEEEEECCCCcChhHHH-HHHHHHHHHHh
Confidence 6675432 22345899999999998765444222110 1246899999999986422211 11112221
Q ss_pred -------hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 79 -------KYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 79 -------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++.+++++||++|. ||++++++|.+.+..
T Consensus 248 ~~~~~~~~~~~~vi~iSA~~g~-Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 248 LIYPREALWRPPVLTMSAVEGR-GLAELWDTVERHRQV 284 (355)
T ss_dssp HHSTTCCSCCCCEEEEBGGGTB-SHHHHHHHHHHHHHH
T ss_pred hccccccCCCCceEEEEcCCCC-CHHHHHHHHHHHHHH
Confidence 124679999999999 999999999988754
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.65 E-value=1.7e-09 Score=80.00 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=46.3
Q ss_pred CcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 51 VPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.|.++|+||+|+.+.+.+..++...++... ++.++++||++|. |++++|++|.+.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTME-GFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCC-CHHHHHHHHHHHHHh
Confidence 456999999998754445666666666654 5789999999999 999999999987754
No 194
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.63 E-value=2e-07 Score=80.32 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=45.1
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|++++ ....+++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence 8999884 7778999999999999999876555544453 2322 4689999999999853
No 195
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.63 E-value=2.4e-07 Score=79.67 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|+.++ ....+++.+|++|+|+|.++..++.....|.. +.. .++|+++|+||+|+..
T Consensus 82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 8999884 67788999999999999998777776666643 443 3589999999999864
No 196
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=5.6e-09 Score=84.32 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCCCCCCccCCHHHHHHHhh---hcCCeEEEEcccCCcccHHHHHH-HHHHHHhcCC
Q psy2792 50 NVPVMLLANKLDLEHLRQVDESLGRSTAV---KYNCTFHEVSVADNSPAIYQAFD-HLLTESRGGP 111 (173)
Q Consensus 50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~~~~~~e~Sak~g~~~v~~lf~-~l~~~i~~~~ 111 (173)
..|+++|+||+|+.. .+....+.. ..+..++.+||+.+. ++.+++. .+++.+...+
T Consensus 214 ~kP~i~v~NK~D~~~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~-~l~~L~~~~l~~~~p~~~ 273 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-----DEQIKRLVREEEKRGYIVIPTSAAAEL-TLRKAAKAGFIEYIPGAS 273 (397)
T ss_dssp HSCEEEEEECGGGSC-----HHHHHHHHHHHHHTTCEEEEECHHHHH-HHHSCSSSCCCCSCC---
T ss_pred CCCEEEEEeCccccc-----hHHHHHHHHHHhhcCCcEEEEeccchh-hHHHHHhhhhhhhcCCCc
Confidence 389999999999852 222333322 236789999999999 9988765 4444333333
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.60 E-value=5.7e-09 Score=81.24 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=41.7
Q ss_pred CCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792 49 NNVPVMLLANKLDLEHLRQV--DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP 111 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~ 111 (173)
.++++++|+||+|+...+++ ..+++..++..+++.||++||+++ |++++|..+++.+.+..
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~--~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES--DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC-----------CHHHHHHHHTTC
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc--cccHHHHHHHHHhhcCC
Confidence 46899999999999754433 245677888889999999999998 69999999999887643
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.59 E-value=6.6e-09 Score=84.36 Aligned_cols=93 Identities=9% Similarity=0.006 Sum_probs=52.1
Q ss_pred HhhhcccCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhhcCCeEE
Q psy2792 10 LTAMICWADGCIIVYSLIDK-ESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVKYNCTFH 85 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~~~~~ 85 (173)
.+.++.++++.+++|+.+.. .+|..+. .|+..+. .++|+|+|+||+|+...+++.. +.+..++..+++.+|
T Consensus 130 aRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~ 204 (418)
T 2qag_C 130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY 204 (418)
T ss_dssp CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEE
Confidence 34567777776666665543 3455554 5766663 3689999999999876555544 566777888899999
Q ss_pred EEcccCCcccHHHHHHHHHHHHh
Q psy2792 86 EVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 86 e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
++||+++. +++++|..+...++
T Consensus 205 ~~sa~~~~-~v~~~~~~l~~~iP 226 (418)
T 2qag_C 205 EFPETDDE-EENKLVKKIKDRLP 226 (418)
T ss_dssp CCC------------------CC
T ss_pred eCCCCCCc-CHHHHHHHHHhhCC
Confidence 99999999 99999988877554
No 199
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.49 E-value=4.7e-08 Score=76.29 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=59.0
Q ss_pred cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhcCCeEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRSTAVKYNCTFH 85 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~~ 85 (173)
+.+..+.++|.+++|+|+.+|. +...+..++..+.. .++|.+||.||+||.+.... ..+....+....|+.++
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 5555689999999999999775 44444555443333 56899999999999753210 01222334445678899
Q ss_pred EEcccCCcccHHHHH
Q psy2792 86 EVSVADNSPAIYQAF 100 (173)
Q Consensus 86 e~Sak~g~~~v~~lf 100 (173)
.+||+++. |+++++
T Consensus 155 ~~sa~~~~-g~~~L~ 168 (307)
T 1t9h_A 155 LTSSKDQD-SLADII 168 (307)
T ss_dssp ECCHHHHT-TCTTTG
T ss_pred EEecCCCC-CHHHHH
Confidence 99999887 766555
No 200
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.48 E-value=6.4e-08 Score=73.92 Aligned_cols=82 Identities=7% Similarity=-0.059 Sum_probs=59.0
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE 86 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 86 (173)
.....+.++|++|+|+|+.++.+..+ +. |+ +.|.++|+||+||.+... .+....+.+..|+.+ .
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll----------~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~ 79 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS----------RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-I 79 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT----------TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-E
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc----------CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-E
Confidence 34567899999999999999876532 12 21 589999999999965211 112233444557778 9
Q ss_pred EcccCCcccHHHHHHHHHH
Q psy2792 87 VSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 87 ~Sak~g~~~v~~lf~~l~~ 105 (173)
+||+++. |+++++..+..
T Consensus 80 iSa~~~~-gi~~L~~~l~~ 97 (262)
T 3cnl_A 80 TTHKGEP-RKVLLKKLSFD 97 (262)
T ss_dssp ECCTTSC-HHHHHHHHCCC
T ss_pred EECCCCc-CHHHHHHHHHH
Confidence 9999999 99999877654
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.44 E-value=3.6e-07 Score=72.17 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=57.6
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhh
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVK 79 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~ 79 (173)
|+|..+. .......+|++|+|+|.+..+.+..+.. .. .++|.++|+||+|+.....+.. ++.......
T Consensus 156 TpG~~~~-~~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~ 225 (341)
T 2p67_A 156 TVGVGQS-ETEVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIARHMYESALHI 225 (341)
T ss_dssp EECCTTH-HHHHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCccch-HHHHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHh
Confidence 6776543 2235689999999999976533221111 11 1368899999999864221111 011111111
Q ss_pred -------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 80 -------YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 80 -------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+...++++||++|. |+++++++|.+.+.
T Consensus 226 ~~~~~~~~~~~vi~iSA~~g~-gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 226 LRRKYDEWQPRVLTCSALEKR-GIDEIWHAIIDFKT 260 (341)
T ss_dssp SCCSBTTBCCEEEECBGGGTB-SHHHHHHHHHHHHH
T ss_pred ccccccCCCCcEEEeeCCCCC-CHHHHHHHHHHHHH
Confidence 13568999999999 99999999988765
No 202
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.39 E-value=4.4e-07 Score=68.98 Aligned_cols=68 Identities=13% Similarity=0.018 Sum_probs=46.5
Q ss_pred CCCCCCc--cHhhhcc---------cCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccC
Q psy2792 2 TIGLTEG--TLTAMIC---------WADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQV 68 (173)
Q Consensus 2 TaG~e~~--~~~~y~~---------~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v 68 (173)
|||++++ ....|++ ++|++|+|+|++... +... ..|+..+...... ...|+++|+||+|+...+..
T Consensus 91 TpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 91 TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred CCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence 8999873 4444443 899999999998754 4433 4677777765521 12499999999999644444
Q ss_pred CH
Q psy2792 69 DE 70 (173)
Q Consensus 69 ~~ 70 (173)
..
T Consensus 170 ~~ 171 (262)
T 3def_A 170 SY 171 (262)
T ss_dssp CH
T ss_pred cH
Confidence 33
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.37 E-value=1.7e-06 Score=68.63 Aligned_cols=95 Identities=9% Similarity=0.115 Sum_probs=55.2
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh---
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV--- 78 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~--- 78 (173)
|+|.... .......+|++++|+|.++......+.. .+ -+.|.++|+||+|+.+.... ......+..
T Consensus 174 T~Gi~~~-~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~ 242 (349)
T 2www_A 174 TVGVGQS-EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA-RRIQAEYVSALK 242 (349)
T ss_dssp CCCC--C-HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-HHHHHHHHHHHT
T ss_pred CCCcchh-hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-HHHHHHHHHHHH
Confidence 6665322 2334678999999999987543222211 11 23678999999998532110 001111211
Q ss_pred -------hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 79 -------KYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 79 -------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
.++.+++.+||++|. |+++++++|.+.+.
T Consensus 243 ~~~~~a~~~~~~vi~iSA~~g~-Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 243 LLRKRSQVWKPKVIRISARSGE-GISEMWDKMKDFQD 278 (349)
T ss_dssp TCC-----CCCEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred hcCccccCCCceEEEEecCCCC-CHHHHHHHHHHHHH
Confidence 124568999999999 99999999988664
No 204
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.35 E-value=4.3e-08 Score=77.80 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=54.3
Q ss_pred cHhhhcccCcEEEE-EEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH--HhhhcC-CeE
Q psy2792 9 TLTAMICWADGCII-VYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS--TAVKYN-CTF 84 (173)
Q Consensus 9 ~~~~y~~~ad~iil-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--~~~~~~-~~~ 84 (173)
+...|+.+++.+|+ |.|.+....-.....++..+. ..+.|+++|+||+|+.+........... +....+ ..+
T Consensus 159 ~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v 234 (353)
T 2x2e_A 159 MLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence 56678877766555 455543211111112333332 3568999999999997543311221111 111123 246
Q ss_pred EEEcccCCcccHHHHHHHHHH
Q psy2792 85 HEVSVADNSPAIYQAFDHLLT 105 (173)
Q Consensus 85 ~e~Sak~g~~~v~~lf~~l~~ 105 (173)
+++||+++. |++++|+.+..
T Consensus 235 ~~~SA~~~~-~i~~l~~~l~~ 254 (353)
T 2x2e_A 235 VNRSQKDID-GKKDITAALAA 254 (353)
T ss_dssp CCCCHHHHH-TTCCHHHHHHH
T ss_pred EeCCccccc-ccccHHHHHHH
Confidence 889999999 99999999876
No 205
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.26 E-value=2.5e-06 Score=67.80 Aligned_cols=84 Identities=18% Similarity=0.109 Sum_probs=56.5
Q ss_pred cccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHhhhcCCeEEEEcccC
Q psy2792 14 ICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTAVKYNCTFHEVSVAD 91 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~~~~~~~~~e~Sak~ 91 (173)
..++|.+++|.+. +|. +...+..|+..... .++|.+||.||+||.+..... .+.........|+.++.+||++
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 6899999999776 454 45555666554443 357889999999996432100 0112223345688899999999
Q ss_pred CcccHHHHHHHH
Q psy2792 92 NSPAIYQAFDHL 103 (173)
Q Consensus 92 g~~~v~~lf~~l 103 (173)
+. |++++...+
T Consensus 203 ~~-gl~~L~~~~ 213 (358)
T 2rcn_A 203 QD-GLKPLEEAL 213 (358)
T ss_dssp TB-THHHHHHHH
T ss_pred Cc-CHHHHHHhc
Confidence 99 999887543
No 206
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.12 E-value=4.4e-06 Score=63.58 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=44.8
Q ss_pred CCCCCCc--cHh-------hh--cccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCC--CcEEEEEeCCCCCCCcc
Q psy2792 2 TIGLTEG--TLT-------AM--ICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNN--VPVMLLANKLDLEHLRQ 67 (173)
Q Consensus 2 TaG~e~~--~~~-------~y--~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~--~piilv~NK~Dl~~~~~ 67 (173)
|||+++. +.. .| +.++|++|||||++.. ++... ..|+..+....+ .+ .|+++|+||+|+...+.
T Consensus 94 TpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 94 TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGGG
T ss_pred CCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcCC
Confidence 8898762 211 12 3579999999999764 34433 468877776542 22 69999999999975444
Q ss_pred CCH
Q psy2792 68 VDE 70 (173)
Q Consensus 68 v~~ 70 (173)
++.
T Consensus 172 ~~~ 174 (270)
T 1h65_A 172 LPY 174 (270)
T ss_dssp CCH
T ss_pred CCH
Confidence 333
No 207
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.08 E-value=1.2e-06 Score=73.45 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=41.4
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL 65 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 65 (173)
....|+..+|++|+|+|+++....+....|+..+.. .+.|+++|+||+|+...
T Consensus 181 ~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 181 VLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred HHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence 455689999999999999886555666677766654 34799999999998653
No 208
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.06 E-value=3e-06 Score=74.39 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=47.5
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|||++++ .+..+++.+|++|+|||+++..+++....|.... . .++|+++|+||+|+.
T Consensus 105 TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 105 SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 8999985 7788999999999999999987887766665433 2 468999999999985
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.02 E-value=1.2e-05 Score=63.49 Aligned_cols=96 Identities=10% Similarity=0.080 Sum_probs=55.5
Q ss_pred CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh--
Q psy2792 2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK-- 79 (173)
Q Consensus 2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-- 79 (173)
|+|..+.- ......+|.+++|+|....+..+.+..+ +. +++.++|.||+|+.............+...
T Consensus 155 T~Gi~~~~-~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~ 224 (337)
T 2qm8_A 155 TVGVGQSE-TAVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGDGERRASAAASEYRAALH 224 (337)
T ss_dssp ECSSSSCH-HHHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCcch-hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccCchhHHHHHHHHHHHHHH
Confidence 66765431 1235789999999998654322211111 11 245677789999743221111122222211
Q ss_pred --------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 80 --------YNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 80 --------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
+..+++.+||+++. |++++++.|.+...
T Consensus 225 l~~~~~~~~~~~vl~~Sal~g~-gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 225 ILTPPSATWTPPVVTISGLHGK-GLDSLWSRIEDHRS 260 (337)
T ss_dssp TBCCSBTTBCCCEEEEBTTTTB-SHHHHHHHHHHHHH
T ss_pred hccccccCCCCCEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 13468899999999 99999999987654
No 210
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.01 E-value=1.5e-05 Score=63.56 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCC--CCC-ccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHH
Q psy2792 50 NVPVMLLANKLDL--EHL-RQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDH 102 (173)
Q Consensus 50 ~~piilv~NK~Dl--~~~-~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~ 102 (173)
..|+++|+||.|. .+. .....+....++...+..++++||+.+. ++.+++..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~-el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEA-ELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHH-HHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHH-HHHHhchH
Confidence 3799999999984 221 1223455677888788999999999876 66655543
No 211
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.00 E-value=6.3e-05 Score=59.87 Aligned_cols=42 Identities=21% Similarity=0.027 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccC
Q psy2792 50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVAD 91 (173)
Q Consensus 50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 91 (173)
..|+++|+||.|..-......+....++...+..++.+||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 489999999999642112224556677777788999999875
No 212
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.99 E-value=4.8e-05 Score=63.72 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=40.7
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|..++. ...-++-+|++|+|+|...----.....| ..+.+ .++|+|++.||+|..
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDRE 165 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccch
Confidence 88988863 34458899999999999874222333345 33344 459999999999974
No 213
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.96 E-value=2.6e-06 Score=73.72 Aligned_cols=100 Identities=12% Similarity=-0.008 Sum_probs=61.8
Q ss_pred cHhhhc-ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-H-hhhcC-CeE
Q psy2792 9 TLTAMI-CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-T-AVKYN-CTF 84 (173)
Q Consensus 9 ~~~~y~-~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~-~~~~~-~~~ 84 (173)
+...|+ ..+|++++|+|.+....-.+...++..+.. .+.|+|+|.||+|+.+........... . ....+ ..+
T Consensus 179 lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V 254 (772)
T 3zvr_A 179 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 254 (772)
T ss_dssp HHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC
T ss_pred HHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce
Confidence 344555 578999999999864322222223333332 468999999999997544332221110 0 00123 246
Q ss_pred EEEcccCCcccHHHHHHHHHHH---HhcCCCC
Q psy2792 85 HEVSVADNSPAIYQAFDHLLTE---SRGGPPS 113 (173)
Q Consensus 85 ~e~Sak~g~~~v~~lf~~l~~~---i~~~~~~ 113 (173)
+.+||++|. |++++++.+... +.+.+.+
T Consensus 255 V~iSA~~G~-GvdeL~eaI~~e~~ffpe~P~y 285 (772)
T 3zvr_A 255 VNRSQKDID-GKKDITAALAAERKFFLSHPSY 285 (772)
T ss_dssp CCCCCEESS-SSEEHHHHHHHHHHHHHHCTTT
T ss_pred EEecccccc-cchhHHHHHHHHHHhccCCcch
Confidence 789999999 999999999873 5455443
No 214
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.60 E-value=8.8e-05 Score=63.22 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|..++ -...-++-+|++|+|+|...--.-.....|. .+..+ ++|.|++.||+|..
T Consensus 74 TPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~----~lp~i~~INKmDr~ 132 (638)
T 3j25_A 74 TPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM----GIPTIFFINKIDQN 132 (638)
T ss_dssp CCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH----TCSCEECCEECCSS
T ss_pred CCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc----CCCeEEEEeccccc
Confidence 8999886 3445588999999999998632112223343 33333 48999999999974
No 215
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.23 E-value=0.0027 Score=54.73 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=39.3
Q ss_pred CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
|+|.-++. ...-++=+|++|+|+|+..--.-.....|.. +.+ .++|.|+|.||+|..
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----HTCCEEEEEECSSST
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHH----cCCCeEEEEcccccc
Confidence 78888863 3445889999999999986322222233433 333 359999999999974
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.044 Score=43.68 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=41.1
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCC--------CccCCHHHHHHHhhhcC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEH--------LRQVDESLGRSTAVKYN 81 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~--------~~~v~~~~~~~~~~~~~ 81 (173)
..+++||++++|+|.+++. .+......++..... ....|.+++.||.|... ....+.++...+...+.
T Consensus 145 ~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 145 AVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp HHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred HHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence 3578999999999999873 333333333333210 13568889999999632 12344555555555444
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.33 E-value=0.082 Score=43.76 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=47.3
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCCCCCccCCHHHHHHHhhhcCCe-----------
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQVDESLGRSTAVKYNCT----------- 83 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~----------- 83 (173)
.+|.+++|+|.+..... + .....+.+ .+|+ ++|.||+|...... .+.......+.+
T Consensus 213 ~pd~vllVvDa~~g~~~--~-~~a~~~~~-----~~~i~gvVlNK~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~ 280 (504)
T 2j37_W 213 QPDNIVYVMDASIGQAC--E-AQAKAFKD-----KVDVASVIVTKLDGHAKGG----GALSAVAATKSPIIFIGTGEHID 280 (504)
T ss_dssp CCSEEEEEEETTCCTTH--H-HHHHHHHH-----HHCCCCEEEECTTSCCCCT----HHHHHHHHHCCCEEEEECSSSTT
T ss_pred cCceEEEEEeccccccH--H-HHHHHHHh-----hcCceEEEEeCCccccchH----HHHHHHHHhCCCeEEeccccchh
Confidence 78999999999774321 1 11222322 1564 88999999753211 112222222322
Q ss_pred -------EEEEcccCCccc-HHHHHHHHHHH
Q psy2792 84 -------FHEVSVADNSPA-IYQAFDHLLTE 106 (173)
Q Consensus 84 -------~~e~Sak~g~~~-v~~lf~~l~~~ 106 (173)
.+.+|+..|. | +.++++++.+.
T Consensus 281 dl~~f~~~~~vsal~G~-Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 281 DFEPFKTQPFISKLLGM-GDIEGLIDKVNEL 310 (504)
T ss_dssp CEECCTHHHHHHCCCTT-TTTTTTHHHHTTT
T ss_pred hhhccCcceeeehhcCC-CcHHHHHHHHHHH
Confidence 2347899999 8 99999988765
No 218
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.47 E-value=2.9 Score=31.58 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=44.9
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
...+..+|.+|+|.+. +..++..+..+++.+.......+++++ +|.|+++-. .....+.+..+..++
T Consensus 174 ~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 174 AAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRL 241 (307)
T ss_dssp GGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEE
T ss_pred HHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------HHHHHHHHHcCCCce
Confidence 4567889999999976 455777777777777664323456655 899999831 334555556666554
No 219
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.91 E-value=0.65 Score=32.66 Aligned_cols=72 Identities=11% Similarity=-0.002 Sum_probs=44.8
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.....+..+|.+|++...+.. + ..+..+++.+.+... .+++++.+|.|++|-.. .. ..+..++.+.++..++
T Consensus 90 ~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 90 ITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LNVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HHHHHHHHHHcCCcee
Confidence 455667789999999987654 4 566666666655421 14577899999999532 11 2334444455555444
No 220
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.77 E-value=1.9 Score=30.78 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=46.1
Q ss_pred ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
......+..+|.+|++...+ ..++..+...++.+.... +.++.+|.|++|-... . ...+..+..++.+..++
T Consensus 82 ~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~-~-~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 82 EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYPS-K-DGDEARQLLTTAGLPLF 153 (209)
T ss_dssp SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTS-C-HHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccc-h-HHHHHHHHHHHcCCchh
Confidence 34556778899999999864 456777777776666532 4678899999985320 1 13344444444565544
No 221
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=88.49 E-value=0.19 Score=40.32 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=18.1
Q ss_pred CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhH
Q psy2792 2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESF 32 (173)
Q Consensus 2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~ 32 (173)
|||+.++ ....+++++|++++|+|+++.+++
T Consensus 93 tpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 93 IAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp CCC-----------CCHHHHHHHTSSSEEEEEEC------
T ss_pred CCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 7888762 345789999999999999875443
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=83.07 E-value=3.4 Score=33.52 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=38.0
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV 89 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 89 (173)
...+|.+++|.|.+....- ......+.+.. .+..+|.||.|.... ...+.......+.++..++.
T Consensus 210 ~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~~----~i~gVIlTKlD~~~~----gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 210 VIHPHEVILVIDGTIGQQA---YNQALAFKEAT----PIGSIIVTKLDGSAK----GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp HHCCSEEEEEEEGGGGGGH---HHHHHHHHHSC----TTEEEEEECCSSCSS----HHHHHHHHHTTCCCEEEEEC
T ss_pred hhcCceEEEEEeCCCchhH---HHHHHHHHhhC----CCeEEEEECCCCccc----ccHHHHHHHHHCCCEEEEEc
Confidence 3468999999998764322 12223333321 345689999997531 33444555566777665554
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=82.48 E-value=11 Score=26.89 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=47.6
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 87 (173)
.....+..+|.+|+|...+ ..++..+..+++.+.... .+...+.+|.|++|-.. ....+ .+.+.++..++.+
T Consensus 133 ~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~--~~~~~---~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 133 VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNS--RITSD---EIEKVIGRPISKR 204 (245)
T ss_dssp THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCT--TSCHH---HHHHHHTSCEEEE
T ss_pred HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCC--CCCHH---HHHHHhCCCeEEE
Confidence 4556688899999999864 567777777777776543 23456789999998542 23333 3334456665544
No 224
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=81.73 E-value=4.9 Score=31.83 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=38.0
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~ 108 (173)
...|.++|.||+|.. ..++...+... -.++.+|+..+. |++.|...+.+.+-
T Consensus 248 ~~~p~i~v~nKid~~-----~~eele~l~~~--~~~~~is~~~e~-gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL-----SIEELELLYRI--PNAVPISSGQDW-NLDELLQVMWDRLN 299 (376)
T ss_dssp EEECEEEEEECGGGS-----CHHHHHHHTTS--TTEEECCTTTCT-THHHHHHHHHHHHC
T ss_pred hccceEEEEeccccc-----CHHHHHHHhcc--cchhhhhhhhcc-cchhHHHHHHHHcC
Confidence 457999999999964 24444443322 247899999999 99999888877664
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=81.08 E-value=3 Score=31.74 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=42.7
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN 92 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 92 (173)
...+|.+++|.|.+... +.......+.. .++ ..+|.||.|... ....+..++...+.++..++ .|
T Consensus 210 ~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D~~~----~~g~~~~~~~~~~~pi~~i~--~G 275 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMDGTA----KGGGALSAVAATGATIKFIG--TG 275 (297)
T ss_dssp HHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGGGCT----THHHHHHHHHTTTCCEEEEE--CS
T ss_pred HhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCCCCc----chHHHHHHHHHHCcCEEEEe--CC
Confidence 45799999999986432 11122222222 255 678999999642 23345566777787776665 56
Q ss_pred cccHHHH
Q psy2792 93 SPAIYQA 99 (173)
Q Consensus 93 ~~~v~~l 99 (173)
+ +++++
T Consensus 276 e-~v~dl 281 (297)
T 1j8m_F 276 E-KIDEL 281 (297)
T ss_dssp S-STTCE
T ss_pred C-Chhhc
Confidence 5 66543
No 226
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=80.02 E-value=4.2 Score=29.88 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=36.6
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
.....+..||.+|++...+ ..+...+...++.+.... .+.++.+|.|+++
T Consensus 159 ~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 159 TLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp HHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred HHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 4455667799999999874 456676766776666654 4578889999994
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=79.29 E-value=1.6 Score=35.31 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=32.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-c-EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNV-P-VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.+|.+++|.|.+.... .... +.... ..+ | ..+|.||+|.... ...+..+....+.++.
T Consensus 210 ~~d~vllVvda~~g~~---~~~~---~~~~~--~~~~~i~gvVlnK~D~~~~----~g~~l~~~~~~~~pi~ 269 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQQ---AGIQ---AKAFK--EAVGEIGSIIVTKLDGSAK----GGGALSAVAETKAPIK 269 (432)
T ss_dssp CCSEEEEEEEGGGGGG---HHHH---HHHHH--TTSCSCEEEEEECSSSCST----THHHHHHHHHSSCCEE
T ss_pred cCcceeEEeeccccHH---HHHH---HHHHh--hcccCCeEEEEeCCCCccc----hHHHHHHHHHHCCCEE
Confidence 6899999999865431 1112 22222 235 5 8899999997421 1223344555555433
No 228
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=79.16 E-value=7.2 Score=28.50 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=33.6
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCcEE-EEEeCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVM-LLANKLDLE 63 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~pii-lv~NK~Dl~ 63 (173)
.....+..+|.+|++...+. .++..+..+++.+.... ...+++++ +|.|+.|-.
T Consensus 126 ~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 126 LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 34455678999999998754 45555544444443321 02457764 899999853
No 229
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=76.81 E-value=1.1 Score=36.23 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=22.7
Q ss_pred CCCcEEEEEeCCCCCCCccCCH--HHHHHHhhhcCCeEEEEcc
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDE--SLGRSTAVKYNCTFHEVSV 89 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~~~~~e~Sa 89 (173)
.++|+|+|.||+|.....++.. ..+.......|+.+|.+|.
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 5689999999999754322211 1112112345666666664
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=72.48 E-value=4.3 Score=32.82 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=38.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV 89 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 89 (173)
..|.+++|.|.+..... ......+.+.. .+..||.||.|... ....+.......+.++..++.
T Consensus 211 ~pd~vlLVlDa~~gq~a---~~~a~~f~~~~----~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKA---YDLASRFHQAS----PIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp CCSEEEEEEEGGGGGGG---HHHHHHHHHHC----SSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC
T ss_pred CCcceEEEEeCccchHH---HHHHHHHhccc----CCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC
Confidence 56899999998764322 22233333322 35778999999642 234455556667888766665
No 231
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=71.18 E-value=3.3 Score=33.22 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCCCC-------CCccCCHHH----HHHHh----hhcC---CeEEEEcc--cCCcccHHHHHHHHHHHHhc
Q psy2792 50 NVPVMLLANKLDLE-------HLRQVDESL----GRSTA----VKYN---CTFHEVSV--ADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 50 ~~piilv~NK~Dl~-------~~~~v~~~~----~~~~~----~~~~---~~~~e~Sa--k~g~~~v~~lf~~l~~~i~~ 109 (173)
+.|+++|.||.|+. .-......+ ...++ .+.+ ...+.+|+ ..+. |++++.+.+.+.+.+
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~-~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHY-DFPVLMDKLISDLPI 253 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTST-THHHHHHHHHHHSCG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCcc-CHHHHHHHHHHhCcc
Confidence 47999999999963 111112222 22232 1222 24788999 6777 899999999998877
Q ss_pred CCCC
Q psy2792 110 GPPS 113 (173)
Q Consensus 110 ~~~~ 113 (173)
.+..
T Consensus 254 g~~~ 257 (413)
T 1tq4_A 254 YKRH 257 (413)
T ss_dssp GGHH
T ss_pred chhh
Confidence 6643
No 232
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=68.85 E-value=27 Score=25.17 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=42.9
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.....+..+|.+|+|...+ ..+...+..+++.+.+.. ..++-+|.|++|-.... .....+.+..+..++
T Consensus 125 ~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 125 SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG---TKVLGVVVNRITTLGIE----MAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CEEEEEEEEEECTTTHH----HHHHHHHHHTTSCEE
T ss_pred HHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC---CCeeEEEEccCCccccc----chHHHHHHHhCCCeE
Confidence 3445677899999998764 456777777766666542 23466899999853211 233444555665543
No 233
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=67.84 E-value=24 Score=25.00 Aligned_cols=51 Identities=6% Similarity=0.001 Sum_probs=35.6
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
.....+..+|.+|+|...+ ..++..+...++.+.+.. ...+.+|.|+.|-.
T Consensus 126 ~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 126 DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG---LAILGFVLNRYGRS 176 (237)
T ss_dssp HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT---CEEEEEEEEEETSC
T ss_pred HHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC---CceEEEEEecCCcc
Confidence 3455678899999999864 556777777776666532 23466889999854
No 234
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=67.68 E-value=9.7 Score=31.54 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792 33 DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109 (173)
Q Consensus 33 ~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~ 109 (173)
.++..-++.++. -++|+||..|+..-..+.+ .+...++|.+.|+.+..+=++-|. |-.+|-+.+++.+-+
T Consensus 361 ~NL~kHien~~~----fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~-G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 361 ANLEKHIENIGK----FGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGE-GGLELARKVLQTLES 430 (557)
T ss_dssp HHHHHHHHHHHT----TTCCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGG-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccch-hHHHHHHHHHHHHhc
Confidence 344444555554 4599999999976432222 344667788888765544566677 888888888877654
No 235
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=66.17 E-value=11 Score=28.16 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=27.2
Q ss_pred cccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
+..|++++++.|.+... +... ...+..+.. . +++|+|.+|+|...
T Consensus 109 iaRal~~lllldep~~g-L~~lD~~~l~~L~~----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 109 DTRVHCCLYFISPTGHS-LRPLDLEFMKHLSK----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCSCCEEEEEECCCSSS-CCHHHHHHHHHHHT----T-SEEEEEETTGGGSC
T ss_pred hheeeeeeEEEecCCCc-CCHHHHHHHHHHHh----c-CcEEEEEeccccCC
Confidence 44578899999965321 1111 223333332 3 89999999999754
No 236
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=63.90 E-value=26 Score=28.92 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc--ccCCcccHHHHHHHHHHHHh
Q psy2792 32 FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS--VADNSPAIYQAFDHLLTESR 108 (173)
Q Consensus 32 ~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S--ak~g~~~v~~lf~~l~~~i~ 108 (173)
+.++..-++.++.+ ++|+||..|+..-..+.+ .+...++|.+.|+.+..+. ++-|. |-.+|-+.+++.+-
T Consensus 346 ~~NL~kHIen~~~f----GvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~s~~wa~GG~-G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 346 FKNLRVHVENLRKF----NLPVVVALNRFSTDTEKE--IAYVVKECEKLGVRVAVSEVFKKGSE-GGVELAKAVAEAAK 417 (543)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEEEECCTTCCHHH--HHHHHHHHHTTTCEEEEECHHHHGGG-GSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHc----CCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccch-hHHHHHHHHHHHhc
Confidence 34555556666654 599999999976432222 3456778889998765432 44566 77788777776553
No 237
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=63.44 E-value=20 Score=25.47 Aligned_cols=49 Identities=14% Similarity=-0.059 Sum_probs=34.5
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
.....+..+|.+|+|.+.+ ..++..+..+.+.+.... -..+.+|.|+.+
T Consensus 146 ~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~---~~~~~~v~N~~~ 194 (254)
T 3kjh_A 146 LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG---IKKVRYVINKVR 194 (254)
T ss_dssp CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CSCEEEEEEEEC
T ss_pred HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC---CccEEEEEeCCC
Confidence 4455678899999999874 556777766666444433 245788999998
No 238
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=63.36 E-value=12 Score=29.75 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCCCCC--CccCCHHHHHHHhhhcC--CeEEEEcccC
Q psy2792 50 NVPVMLLANKLDLEH--LRQVDESLGRSTAVKYN--CTFHEVSVAD 91 (173)
Q Consensus 50 ~~piilv~NK~Dl~~--~~~v~~~~~~~~~~~~~--~~~~e~Sak~ 91 (173)
..|+++++|+.|-.- ...--.+...+++...+ ..++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 369999999998320 11122455667776665 7799999986
No 239
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=58.41 E-value=49 Score=23.86 Aligned_cols=66 Identities=15% Similarity=0.026 Sum_probs=41.0
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
..+|.+|++...+ ..++..+...+..+.......++++ .+|.|+.+-. ...+....+.+.++..++
T Consensus 139 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 139 GKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp TSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCHHHHHHHHHHHTCCEE
T ss_pred hhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhHHHHHHHHHHcCCccc
Confidence 4699999998864 5567777666666665432234554 6889998732 224445555556665544
No 240
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=57.38 E-value=16 Score=26.36 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=36.1
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCcEEEEEeCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-----VNNVPVMLLANKLDL 62 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~piilv~NK~Dl 62 (173)
.....+..+|.+|+|.+. +..++..+..++..+..... .....+.+|.|++|-
T Consensus 128 ~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 128 GALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred HHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 455567789999999986 45667777666666654320 022567899999984
No 241
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=55.35 E-value=34 Score=25.26 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=31.6
Q ss_pred HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHh---hhCCCCCcE-EEEEeCCCCC
Q psy2792 10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQR---HRAVNNVPV-MLLANKLDLE 63 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~---~~~~~~~pi-ilv~NK~Dl~ 63 (173)
....+..+|.+|++...+ ..++..+..++..+.. .. ..++++ -+|.|+.|..
T Consensus 170 ~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~-~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 170 TNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQF-NPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp HHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEEESCTT
T ss_pred HHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEEEEECCC
Confidence 344556799999998764 3345555444444433 22 245674 4889999953
No 242
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=54.73 E-value=61 Score=23.79 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=38.9
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
..+|.+|++... +..++..+...+..+.......+.+ +-+|.|+.+-. ...+....+.+.++..++
T Consensus 142 ~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 142 NKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----REDELIIALANKLGTQMI 208 (289)
T ss_dssp TCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THHHHHHHHHHHHTSCEE
T ss_pred hhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHHHHHHHHHHHcCcccc
Confidence 469999998876 4556666666666665543223455 45788998732 112334445555565543
No 243
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=53.21 E-value=21 Score=25.99 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=30.1
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCC
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDL 62 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl 62 (173)
..+|.+|+|...+. .+...+...++.+... +++++ +|.|+.|.
T Consensus 151 ~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 151 AKPTGVVVVSTPQE-LTAVIVEKAINMAEET----NTSVLGLVENMSYF 194 (262)
T ss_dssp HCCSEEEEEECSSS-CCHHHHHHHHHHHHTT----TCCEEEEEETTCCE
T ss_pred ccCCeEEEEecCcc-chHHHHHHHHHHHHhC----CCCEEEEEECCCcc
Confidence 36899999987653 4566666666666542 46766 89999884
No 244
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=52.39 E-value=5.5 Score=29.39 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=30.3
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 18 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
.++|+||+...++..+.+. +..... ..+..+++||.-.+......-..++....+..+|++|+...
T Consensus 104 ggII~~f~~p~~~~~~~i~----~~~~~~-~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~~ 169 (233)
T 3uc9_A 104 AGIILITDIRQTKPQELLH----QFMIAA-HRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNWK 169 (233)
T ss_dssp EEEEEEECHHHHCGGGTHH----HHHHHS-CTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEECC
T ss_pred ceEEEEEeCCCcchHHHHH----HHhccC-CCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEec
Confidence 6799999865544443332 222222 23455666654433211000001111223445678888653
No 245
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=51.17 E-value=16 Score=25.79 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=30.9
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCcEEEEEeC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANK 59 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~NK 59 (173)
.-+..||++|++.-.-+..--..++.|++.+.... .-.+.|++++++=
T Consensus 69 ~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 34789999999987765432234466776665411 1256788888774
No 246
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=50.93 E-value=10 Score=24.32 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCCCccHhhhcccCcEEEEEEeCC--ChhhH
Q psy2792 4 GLTEGTLTAMICWADGCIIVYSLI--DKESF 32 (173)
Q Consensus 4 G~e~~~~~~y~~~ad~iilv~d~~--~~~s~ 32 (173)
|.+..++...+..||++|+.-|.. +.+.|
T Consensus 45 g~~n~Lt~~~I~~AD~VIia~d~~v~~~~RF 75 (106)
T 2m1z_A 45 GIENELTEKDVNIGEVVIFAVDTKVRNKERF 75 (106)
T ss_dssp EESSCCCHHHHHHCSEEEEEESSCCSTHHHH
T ss_pred cccCCCCHHHHhhCCEEEEeccccccchhcc
Confidence 444458888999999999999975 34444
No 247
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=48.71 E-value=12 Score=31.44 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=31.7
Q ss_pred CCCCCCc-------cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792 2 TIGLTEG-------TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64 (173)
Q Consensus 2 TaG~e~~-------~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 64 (173)
|+|++.. +...|+.+...+++++-..+.+ .-..+..+..++. ..+.+.|+|.||.|+..
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~----~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD----PEGDRTIGILTKPDLVD 228 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC----SSCCSEEEEEECGGGSS
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh----hcCCceEEEecchhhcC
Confidence 6777652 5566766655555544433322 1111222333332 34578999999999853
No 248
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.54 E-value=52 Score=21.21 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=36.4
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA 90 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 90 (173)
|.+-|++++|-. +|. +-+..++++..+ .++.+++|-|.-|-. + ..+++.-....|...-.+|-+
T Consensus 75 ypqldvvvivtt-ddk---ewikdfieeake----rgvevfvvynnkddd--r---rkeaqqefrsdgvdvrtvsdk 138 (162)
T 2l82_A 75 YPQLDVVVIVTT-DDK---EWIKDFIEEAKE----RGVEVFVVYNNKDDD--R---RKEAQQEFRSDGVDVRTVSDK 138 (162)
T ss_dssp CTTCCEEEEEEC-CCH---HHHHHHHHHHHH----TTCEEEEEEECSCHH--H---HHHHHHHHCCSSCEEEEESSH
T ss_pred CCCCcEEEEEec-CcH---HHHHHHHHHHHh----cCcEEEEEecCCCch--h---HHHHHHHhhhcCceeeecCCH
Confidence 667888887753 222 223334444443 567887777765521 1 234555455567777777754
No 249
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=46.59 E-value=21 Score=26.45 Aligned_cols=46 Identities=7% Similarity=0.139 Sum_probs=31.1
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLE 63 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~ 63 (173)
....+|.+|+|..... .+...+...++.+.+. +++++ +|.|++|..
T Consensus 211 l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 211 FSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT----GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT----TCEEEEEEEEEECC-
T ss_pred HHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC----CCCEEEEEEeCCcCC
Confidence 4467899999998754 3556666666666542 45655 889999853
No 250
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=46.51 E-value=17 Score=23.32 Aligned_cols=68 Identities=9% Similarity=-0.068 Sum_probs=37.7
Q ss_pred hcccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 13 MICWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.+.++|++|++..+-...-... +..+++.+... ..+.++.++++--.- .. -............|..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~--l~~k~~~~~~t~g~~-~~--~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPK--LKGKKVGLFGSYGWG-SG--EWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGG--CSSCEEEEEEEESSC-CS--HHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhh--cCCCEEEEEEecCCC-Cc--hHHHHHHHHHHHCCCEEc
Confidence 4678899999887643221122 55666665432 256788888874321 11 123344555556676544
No 251
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=45.56 E-value=15 Score=24.45 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=36.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
.+..+|+.=|++..+....+ ..+-+. .++|++.+++|.+| +...-...++..+-+--..+. +
T Consensus 48 kakLViiA~D~~p~~~~~~l----~~lc~~---~~VP~~~v~sk~eL----------G~a~G~~~~~s~vaI~d~~~s-~ 109 (134)
T 2ale_A 48 ISEFIIMAADCEPIEILLHL----PLLCED---KNVPYVFVPSRVAL----------GRACGVSRPVIAASITTNDAS-A 109 (134)
T ss_dssp CEEEEEEETTCSSGGGGTHH----HHHHHH---HTCCEEEESCHHHH----------HHHTTCSSCCSEEEEECCTTC-T
T ss_pred CCeEEEEeCCCCHHHHHHHH----HHHHHh---cCCCEEEECCHHHH----------HHHhCCCCCeEEEEEEcCChH-H
Confidence 34455555565543333322 222222 36999998877765 222222233334444333444 6
Q ss_pred HHHHHHHHHHHH
Q psy2792 96 IYQAFDHLLTES 107 (173)
Q Consensus 96 v~~lf~~l~~~i 107 (173)
+..+++.+...+
T Consensus 110 ~~~l~~~i~~~~ 121 (134)
T 2ale_A 110 IKTQIYAVKDKI 121 (134)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667766665544
No 252
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=44.99 E-value=19 Score=25.41 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=32.3
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
..-+..||++|++.-.-+..--..++.|++.+.... -.+.|++++++-
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~-l~gK~~~~v~t~ 127 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILDTDA-LTGMPTIIAATA 127 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTT-TTTCEEEEEEEE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhh-cCCCEEEEEEeC
Confidence 445789999999988766443345566777664321 356788888773
No 253
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=42.30 E-value=13 Score=25.74 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=28.9
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh--hCCCCCcEEEEEeC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRH--RAVNNVPVMLLANK 59 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~~~piilv~NK 59 (173)
-+..+|++||++-+-.-.--..++.|++.+... ....+.|++++++=
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 477899999987654432223456677776542 01245677777775
No 254
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=42.16 E-value=14 Score=25.88 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=39.0
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH-HHHHHhhhcCCeE
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES-LGRSTAVKYNCTF 84 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~-~~~~~~~~~~~~~ 84 (173)
.+..+|++|+++-+-+..--..++.|++.+.... ..+.|++++++ ..-..... ..+ ....++...|+.+
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~-~~gK~~~~~~t-gg~~~~~~-a~~~~l~~~l~~~g~~~ 135 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDILPQFA-LAGKAALPLAT-GGSPAHVL-ALDYGLRPVLHSMGVRH 135 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTT-TTTCEEEEEEE-ESSGGGGG-HHHHTHHHHHHTTTCSE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhccccc-cCCCEEEEEEE-CCCcchhh-HHHHHHHHHHHHcCCEe
Confidence 4778999999988765432334456666553211 35678888888 44322111 111 3445556666554
No 255
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=42.05 E-value=1.1e+02 Score=23.14 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=38.9
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.+..||.+|++... +..++..+...+..+.......++++. +|.|.++.. .+..+++++++..++
T Consensus 183 al~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 183 PLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRL 248 (314)
T ss_dssp GGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEE
T ss_pred HHhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------hHHHHHHHHhCCeEE
Confidence 46678999988765 455666666666666554422344442 577877642 334556666665543
No 256
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=41.79 E-value=32 Score=24.04 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=30.4
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh--hCCCCCcEEEEEe
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH--RAVNNVPVMLLAN 58 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~~~piilv~N 58 (173)
..-+..||++|++.-.-+..--..++.|++.+... ..-.+.|+.++++
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~ 116 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTS 116 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEE
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEe
Confidence 34578899999998776543233445566665542 1125678888876
No 257
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=41.59 E-value=26 Score=24.62 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=29.0
Q ss_pred hhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEe
Q psy2792 11 TAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLAN 58 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~N 58 (173)
..-+..||++|++.-.-+ +..+.+.-.|+........-.+.|+.+|+.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~ 112 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGT 112 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEE
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEe
Confidence 345788999999865544 445666666654321111125678888765
No 258
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=41.15 E-value=25 Score=23.88 Aligned_cols=47 Identities=6% Similarity=-0.128 Sum_probs=29.1
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh----------CCCCCcEEEEEe
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR----------AVNNVPVMLLAN 58 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~----------~~~~~piilv~N 58 (173)
.-+.++|++|+++-+-.-.--..++.|++.+.... ...+.+++++++
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t 123 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAV 123 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEE
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEe
Confidence 35789999999998766433344566777654211 013467777766
No 259
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=41.02 E-value=19 Score=24.83 Aligned_cols=69 Identities=6% Similarity=-0.065 Sum_probs=38.4
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.-+..||++|+++-+-...--..++.|++.+... ..+.|++++.. ..... .-.......++...|+.++
T Consensus 80 ~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~--l~gK~~~~~~~-G~~~~--~~~~~~l~~~l~~~G~~~~ 148 (191)
T 1t0i_A 80 RIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHE--WHGKPALVVSY-GGHGG--SKCNDQLQEVLHGLKMNVI 148 (191)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTT--TTTCEEEEEEE-ETTTT--HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhh--cCCCEEEEEEe-CCcch--hhHHHHHHHHHHHCCCEEc
Confidence 4577999999999876643234456677765432 24567766655 22211 1112234445556676543
No 260
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=40.69 E-value=36 Score=23.42 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=32.3
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh--hCCCCCcEEEEEeCC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH--RAVNNVPVMLLANKL 60 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~~~piilv~NK~ 60 (173)
.-+.++|++|+.+.+-.-.-...+..|++.+... ....+.+++++++--
T Consensus 48 ~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 48 EDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred HHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 3467899999998876544345567777776541 112567888888743
No 261
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=39.80 E-value=21 Score=23.51 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=8.3
Q ss_pred CCCcEEEEEeCCCC
Q psy2792 49 NNVPVMLLANKLDL 62 (173)
Q Consensus 49 ~~~piilv~NK~Dl 62 (173)
.++|++.|.+|.+|
T Consensus 66 ~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 66 NEIKYVSVPKRASL 79 (126)
T ss_dssp TTCCEEEESCSHHH
T ss_pred hCCCEEEECCHHHH
Confidence 35677666655554
No 262
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=39.60 E-value=12 Score=25.52 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=39.0
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
-+..+|++|+++-.-+..-...++.|++.+.... ..+.|+.++++=-.-.. ...........+...++.++
T Consensus 60 ~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~-~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 60 RVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQ-FKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHH-HTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhh-hCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEe
Confidence 5778999999988766433344555665443211 14578888875332111 00112344555666676544
No 263
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=39.30 E-value=44 Score=22.90 Aligned_cols=49 Identities=6% Similarity=-0.093 Sum_probs=28.6
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh---hCCCCCcEEEEEeCC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKL 60 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~NK~ 60 (173)
.-+.++|++|+++-+-.-.--..+..|++.+... ....+.+++++++--
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g 118 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTA 118 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBS
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecC
Confidence 3467899999998775533233445566555331 112456777776643
No 264
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=39.27 E-value=71 Score=20.11 Aligned_cols=75 Identities=8% Similarity=0.056 Sum_probs=37.7
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
..|++|+=++..+.+.++ ++..+........+|+|++....|. ..... +...|+..|-.- .. .
T Consensus 52 ~~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~~--------~~~~~-~~~~g~~~~l~k---p~-~ 114 (147)
T 2zay_A 52 HPHLIITEANMPKISGMD----LFNSLKKNPQTASIPVIALSGRATA--------KEEAQ-LLDMGFIDFIAK---PV-N 114 (147)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHTSTTTTTSCEEEEESSCCH--------HHHHH-HHHHTCSEEEES---SC-C
T ss_pred CCCEEEEcCCCCCCCHHH----HHHHHHcCcccCCCCEEEEeCCCCH--------HHHHH-HHhCCCCEEEeC---CC-C
Confidence 457776655555443333 3444554211367899888776552 22222 234455433322 23 4
Q ss_pred HHHHHHHHHHHH
Q psy2792 96 IYQAFDHLLTES 107 (173)
Q Consensus 96 v~~lf~~l~~~i 107 (173)
.+++...|...+
T Consensus 115 ~~~L~~~i~~~~ 126 (147)
T 2zay_A 115 AIRLSARIKRVL 126 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556665555444
No 265
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=38.84 E-value=24 Score=24.56 Aligned_cols=71 Identities=13% Similarity=-0.105 Sum_probs=40.7
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---------CCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR---------AVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN 81 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~---------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 81 (173)
..-+..||++|+++-+-+-.--..++.|++.+.... .-.+.|++++++=-...... .......+....|
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~--~~~~l~~~l~~~G 139 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEE--VFEDYRSLLPFIR 139 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---C--CSHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhH--HHHHHHHHHHHcC
Confidence 345789999999987755433345577888776421 12567777776654321111 1234455556666
Q ss_pred Ce
Q psy2792 82 CT 83 (173)
Q Consensus 82 ~~ 83 (173)
+.
T Consensus 140 ~~ 141 (192)
T 3fvw_A 140 MH 141 (192)
T ss_dssp CE
T ss_pred Ce
Confidence 55
No 266
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=38.80 E-value=11 Score=28.88 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=28.0
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
+.++|++|++=|+++....+++..+++.+... ...++++|.--.|.
T Consensus 77 i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l---~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 77 MPYGDILLHTGDFTELGLPSEVKKFNDWLGNL---PYEYKIVIAGNHEL 122 (296)
T ss_dssp CCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS---CCSEEEECCCTTCG
T ss_pred cCCCCEEEECCcccCCCCHHHHHHHHHHHHhC---CCCeEEEEcCCccc
Confidence 46899999999999865555555555545443 22344444333453
No 267
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=38.48 E-value=48 Score=24.47 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=31.6
Q ss_pred cHhhhcccCcEEEEEEeCCChhhHHHHHH---H-------------H---HHHHhhhCCCC-CcEEEEEeCCCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESFDYAVS---T-------------L---QNLQRHRAVNN-VPVMLLANKLDLE 63 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~---~-------------~---~~i~~~~~~~~-~piilv~NK~Dl~ 63 (173)
.....+..+|.+|++...+. .++..+.. + + ..+....+..+ .++.+|.|++|-.
T Consensus 118 ~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~ 191 (286)
T 2xj4_A 118 ITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATT 191 (286)
T ss_dssp HHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTC
T ss_pred HHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCC
Confidence 45567788999999998653 23322211 1 2 22222200145 6788999999853
No 268
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=37.66 E-value=49 Score=22.78 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=24.0
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEE
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLA 57 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 57 (173)
.++.||++|.++|.+++++=...+-= .... .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~EiG----yA~a--lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFXIG----FMRA--MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHHHH----HHHH--TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceeehh----hHhh--CCCeEEEEE
Confidence 47889999999997666543222111 1111 468988874
No 269
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=37.52 E-value=67 Score=19.75 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=32.3
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC--CCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792 22 IVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK--LDLEHLRQVDESLGRSTAVKYNCTFHEVS 88 (173)
Q Consensus 22 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK--~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 88 (173)
+||++++++.+...-.+...+.+.. ++..+.||.+- ..+.....--.+....+ ...|..++-|.
T Consensus 3 vv~~v~d~~~~~~al~~~~n~~~~~--~~~~v~vv~~g~gv~~~~~~~~~~~~i~~l-~~~gV~~~~C~ 68 (108)
T 2pd2_A 3 VVVQIKDFDKVPQALRSVINLYNDI--KDAEIEVVLHQSAIKALLKDSDTRSIIEDL-IKKNILIVGCE 68 (108)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHS--TTCEEEEEECGGGGGGGBTTCTTHHHHHHH-HHTTCEEEEEH
T ss_pred EEEEeCChHHHHHHHHHHHHHHhhC--CCCeEEEEEcChHHHHHHcCchHHHHHHHH-HHCcCEEEecH
Confidence 3566668877766655555555543 35666666553 22211111112333333 34688777663
No 270
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=37.46 E-value=49 Score=26.53 Aligned_cols=34 Identities=6% Similarity=0.131 Sum_probs=26.6
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH 45 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~ 45 (173)
..|+..+++.++|+|.++. +++....|+..+.+.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 5577778899999999987 567777787777664
No 271
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=36.70 E-value=51 Score=22.61 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=39.9
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh---hCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
..-+.++|++||.+-+-.-.-...++.|++.+... ....+.+++++++--...............++...|+.++
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~ 142 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIV 142 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEEC
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEe
Confidence 34577899999998876533234456666665321 1124567777766433211111122344445555666544
No 272
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=36.45 E-value=37 Score=23.72 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=24.1
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQR 44 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~ 44 (173)
.-+..||++|+++-+-.-.-=..++.|++.+..
T Consensus 69 ~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~ 101 (196)
T 3lcm_A 69 DLVTWADHLIFIFPIWWSGMPAILKGFIDRVFV 101 (196)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSC
T ss_pred HHHHhCCEEEEECchhhccccHHHHHHHHHHcc
Confidence 357899999999987664333456789988853
No 273
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=36.35 E-value=45 Score=23.22 Aligned_cols=74 Identities=9% Similarity=0.067 Sum_probs=38.9
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh---hCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.-+.++|++||.+-+-.-.--..++.|++.+... ....+.+++++++--.-.............++...|+.++
T Consensus 74 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 150 (211)
T 1ydg_A 74 ADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLT 150 (211)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEEC
T ss_pred HHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 3577899999988765432223456677665421 1124567766666332211111122344555666665544
No 274
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=35.34 E-value=40 Score=24.96 Aligned_cols=47 Identities=11% Similarity=-0.068 Sum_probs=31.3
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh------------CCCCCcEEEEEeC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR------------AVNNVPVMLLANK 59 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~piilv~NK 59 (173)
-+..||++||++-+-.-.-=..++.|++.+.... ...+.+++++.+=
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~ 148 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITT 148 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeC
Confidence 3889999999998866432244678998875421 1245677777663
No 275
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=34.52 E-value=50 Score=23.53 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.1
Q ss_pred ccCcEEEEEEeCCChhh
Q psy2792 15 CWADGCIIVYSLIDKES 31 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s 31 (173)
.++|++|++=|+.+...
T Consensus 31 ~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEA 47 (260)
T ss_dssp HCCSEEEEESCCCCCHH
T ss_pred cCCCEEEECCCCCCccC
Confidence 47899999999988643
No 276
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=34.19 E-value=24 Score=25.97 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=40.2
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh----hCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCe
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH----RAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCT 83 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 83 (173)
.-+..||++||+.-.-+..--..++.|++.+... ....+.|+++|++---. . ..........++...|+.
T Consensus 94 ~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-g-g~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 94 ELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-Q-SFNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-C-CCHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-c-HHHHHHHHHHHHHHCCCE
Confidence 4577899999999876644334556677666432 11256788888774221 1 111123444555556654
No 277
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=34.17 E-value=32 Score=26.46 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=38.7
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++|+| |.+|.|.. .++..+.|++.+++.+.++..+.. .+..+..+|...+
T Consensus 79 ~~~P~I-Iltrg~~~------peelie~A~~~~IPVL~T~~~ts~-~~~~l~~~l~~~~ 129 (314)
T 1ko7_A 79 PETPAI-IVTRDLEP------PEELIEAAKEHETPLITSKIATTQ-LMSRLTTFLEHEL 129 (314)
T ss_dssp TTCCCE-EECTTCCC------CHHHHHHHHHTTCCEEECCSCHHH-HHHHHHHHHHHHT
T ss_pred CCCCEE-EEeCCCCC------CHHHHHHHHHCCCeEEEECCchhH-HHHHHHHHHHHhh
Confidence 457765 45777754 355677888889999999999888 8888888877654
No 278
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=33.51 E-value=52 Score=22.74 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=30.2
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh-------hCCCCCcEEEEEe
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH-------RAVNNVPVMLLAN 58 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~-------~~~~~~piilv~N 58 (173)
.-+..||++|+.+-+-.-.-=..++.|++++... ....+.+++++.+
T Consensus 47 ~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t 100 (177)
T 3ha2_A 47 SLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVS 100 (177)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEE
T ss_pred HHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEe
Confidence 4578999999999876543334557788887432 0124556666654
No 279
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=33.38 E-value=36 Score=23.93 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=23.3
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHH
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQ 43 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~ 43 (173)
-+..||++|+++-+-+-.--..++.|++.+.
T Consensus 84 ~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~ 114 (212)
T 3r6w_A 84 ELFDSDLLVISTPMYNFSVPSGLKAWIDQIV 114 (212)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHhCCEEEEEcCcccccCCHHHHHHHHHHh
Confidence 4788999999998766433345688998884
No 280
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=33.02 E-value=57 Score=19.86 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=9.8
Q ss_pred EEEEEEeCCChhh
Q psy2792 19 GCIIVYSLIDKES 31 (173)
Q Consensus 19 ~iilv~d~~~~~s 31 (173)
.++++||+++...
T Consensus 5 ~~lV~YDI~~~kr 17 (90)
T 1zpw_X 5 LYAVAYDIPDDTR 17 (90)
T ss_dssp EEEEEEECCCHHH
T ss_pred EEEEEEeCCChHH
Confidence 3788999987633
No 281
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=32.91 E-value=54 Score=22.65 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=26.6
Q ss_pred cCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEE-EeCCCC
Q psy2792 16 WADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLL-ANKLDL 62 (173)
Q Consensus 16 ~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv-~NK~Dl 62 (173)
++|++|++=|+.+.. ..+....+++.+... .+|+++| ||. |.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~----~~pv~~v~GNH-D~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA----HLPTAYVPGPQ-DA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG----CSCEEEECCTT-SC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc----CCcEEEECCCC-Cc
Confidence 789999999998764 444444555555442 3566554 664 53
No 282
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=32.83 E-value=31 Score=23.71 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=40.9
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh------------CCCCCcEEEEEeCCCCCCC--ccCCHHHHHHHh
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR------------AVNNVPVMLLANKLDLEHL--RQVDESLGRSTA 77 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~ 77 (173)
.-+..||++||++-+-.-.--..++.|++.+.... ...+.+++++++=-.-... -.........++
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l 161 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFL 161 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHH
Confidence 34779999999987765332244677888876310 1245677777763221111 111233345566
Q ss_pred hhcCCeE
Q psy2792 78 VKYNCTF 84 (173)
Q Consensus 78 ~~~~~~~ 84 (173)
...|+..
T Consensus 162 ~~~G~~~ 168 (201)
T 1t5b_A 162 GFIGITD 168 (201)
T ss_dssp HHTTCCC
T ss_pred hhcCcce
Confidence 6667653
No 283
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=32.37 E-value=47 Score=23.05 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=23.7
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQR 44 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~ 44 (173)
-+.+||++||++-+-.-.--..++.|++.+..
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~ 122 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINV 122 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCC
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhc
Confidence 47799999999987664333456788888754
No 284
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=32.15 E-value=45 Score=23.96 Aligned_cols=71 Identities=8% Similarity=-0.115 Sum_probs=40.7
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---CCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR---AVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
-+..||++|+.+-+-.-.--..++.|++.+.... ...+.|++++++=--- . ..........++...|+.++
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeee
Confidence 4789999999988766433345577777763221 1245677776653221 1 11123445566666776643
No 285
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=31.47 E-value=78 Score=22.17 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=23.2
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQR 44 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~ 44 (173)
.-+..||++||++-+-.-.-=..++.|++.+..
T Consensus 66 ~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~ 98 (204)
T 2amj_A 66 QNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFT 98 (204)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEECCccccCCCHHHHHHHHHHhh
Confidence 457889999999987664322445778887643
No 286
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=31.02 E-value=46 Score=21.34 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=37.8
Q ss_pred hcccCcEEEEEEeCCChhhHH--HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeE
Q psy2792 13 MICWADGCIIVYSLIDKESFD--YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTF 84 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 84 (173)
-+.++|++|++..+-...-+. .+..|++.+... ..+.++.++++--.- ... ............|+..
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~g~~-~~~--a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSYGWG-DGK--WMRDFEERMNGYGCVV 110 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEESSS-CSH--HHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEecCCC-CCh--HHHHHHHHHHHCCCEE
Confidence 467899999998765422121 345566666543 256788888874321 111 1344455566666553
No 287
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=30.95 E-value=22 Score=22.97 Aligned_cols=25 Identities=16% Similarity=0.035 Sum_probs=19.8
Q ss_pred CCCCccHhhhcccCcEEEEEEeCCC
Q psy2792 4 GLTEGTLTAMICWADGCIIVYSLID 28 (173)
Q Consensus 4 G~e~~~~~~y~~~ad~iilv~d~~~ 28 (173)
|.+..++...+..||++|++-|..-
T Consensus 48 G~~n~Lt~~~I~~Ad~VIiA~d~~v 72 (111)
T 2kyr_A 48 GIQNRLTAQDIAEATIIIHSVAVTP 72 (111)
T ss_dssp EEESCCCHHHHHHCSEEEEEESSCC
T ss_pred CcCCCCCHHHHHhCCEEEEEeCCCc
Confidence 4444588889999999999999653
No 288
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.72 E-value=1.1e+02 Score=19.87 Aligned_cols=82 Identities=7% Similarity=-0.110 Sum_probs=49.0
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcc
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSP 94 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~ 94 (173)
.++|++.+....+ .....+...++.+++.. ..++++++-|.-.- .. . ...+....+.+.|+..+. ..+.
T Consensus 53 ~~~d~v~lS~~~~--~~~~~~~~~i~~l~~~g-~~~i~v~vGG~~~~-~~-~--~~~~~~~~~~~~G~d~~~---~~g~- 121 (137)
T 1ccw_A 53 TKADAILVSSLYG--QGEIDCKGLRQKCDEAG-LEGILLYVGGNIVV-GK-Q--HWPDVEKRFKDMGYDRVY---APGT- 121 (137)
T ss_dssp HTCSEEEEEECSS--THHHHHTTHHHHHHHTT-CTTCEEEEEESCSS-SS-C--CHHHHHHHHHHTTCSEEC---CTTC-
T ss_pred cCCCEEEEEecCc--CcHHHHHHHHHHHHhcC-CCCCEEEEECCCcC-ch-H--hhhhhHHHHHHCCCCEEE---CCCC-
Confidence 3678877776654 34566677777777754 23567665554211 00 0 133344567778876553 3555
Q ss_pred cHHHHHHHHHHHH
Q psy2792 95 AIYQAFDHLLTES 107 (173)
Q Consensus 95 ~v~~lf~~l~~~i 107 (173)
++.++..++.+.+
T Consensus 122 ~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 122 PPEVGIADLKKDL 134 (137)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7788888887654
No 289
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=30.52 E-value=1.2e+02 Score=23.44 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=27.2
Q ss_pred cHhhhcccCcEEEEEEeCCChhhH-------HHHHHHHHHHHhhhCCCCCc-EEEEEeCCC
Q psy2792 9 TLTAMICWADGCIIVYSLIDKESF-------DYAVSTLQNLQRHRAVNNVP-VMLLANKLD 61 (173)
Q Consensus 9 ~~~~y~~~ad~iilv~d~~~~~s~-------~~~~~~~~~i~~~~~~~~~p-iilv~NK~D 61 (173)
.....+..+|.+|+|...+.. ++ ..+...++.+........+. ++.+.|+.|
T Consensus 262 ~~~~al~~aD~vliv~~p~~~-~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 262 FLLNGLAASDLLLTPTPPAQV-DFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp HHHHHHHHCSEEEEEECSSHH-HHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred HHHHHHHHCCEEEEEecCchh-hHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 445567789999999986532 22 22233334444433112222 466788887
No 290
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=30.46 E-value=76 Score=24.41 Aligned_cols=39 Identities=8% Similarity=0.143 Sum_probs=28.1
Q ss_pred CcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCcEEEEE
Q psy2792 17 ADGCIIVYSLIDKE----------SFDYAVSTLQNLQRHRAVNNVPVMLLA 57 (173)
Q Consensus 17 ad~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~ 57 (173)
...+|+||++-+++ +.+.-+.|++.|.... .+.++++|.
T Consensus 90 ~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i--~~~~~vvIl 138 (315)
T 1uoz_A 90 AMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGL--GSSPATIIV 138 (315)
T ss_dssp CBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHh--CCCceEEEE
Confidence 34578999987754 4666678999988876 456776664
No 291
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=29.94 E-value=47 Score=23.30 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=24.1
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQR 44 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~ 44 (173)
.-+..||++|+.+-+-.-.-=..++.|++++..
T Consensus 54 ~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~ 86 (192)
T 3f2v_A 54 KLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLT 86 (192)
T ss_dssp HHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSC
T ss_pred HHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhh
Confidence 457899999999987654333456789998753
No 292
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=29.91 E-value=34 Score=22.07 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=24.0
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.+..+|+.-|++..+ +..++..+-+. .++|++.|.+|.+|
T Consensus 41 ka~LVvIA~D~~p~~----i~~~l~~lC~~---~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 41 KAKLVLIANDVDPIE----LVVFLPALCKK---MGVPYAIVKGKARL 80 (113)
T ss_dssp CCSEEEECSCCSSHH----HHTTHHHHHHH---TTCCCEECSCSTTT
T ss_pred CceEEEEeCCCCHHH----HHHHHHHHHHH---cCCCEEEECCHHHH
Confidence 466777777765422 22233333222 46999999999887
No 293
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=29.73 E-value=75 Score=19.46 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.3
Q ss_pred EEEEEEeCCChh
Q psy2792 19 GCIIVYSLIDKE 30 (173)
Q Consensus 19 ~iilv~d~~~~~ 30 (173)
.+|++||+.+..
T Consensus 5 ~vlV~YDI~~~k 16 (91)
T 3exc_X 5 KLLVVYDVSDDS 16 (91)
T ss_dssp EEEEEEECCSHH
T ss_pred EEEEEEeCCCch
Confidence 478899998754
No 294
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=28.96 E-value=62 Score=21.37 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
.++|++.+++|.+| +..+-....+..+-+--..+. .+.++++.+.+.+
T Consensus 83 ~~IP~~~v~sk~eL----------G~a~G~~~~v~~vaI~d~~~s-~i~~~~~~~~~~~ 130 (135)
T 2aif_A 83 KNTPYVFVRSKVAL----------GRACGVSRPVIAAAITSKDGS-SLSSQITELKDQI 130 (135)
T ss_dssp TTCCEEEESCHHHH----------HHHTTCSSCCSEEEEECCTTC-TTHHHHHHHHHTT
T ss_pred cCCcEEEECCHHHH----------HHHhCCCCcEEEEEEEcCCcH-HHHHHHHHHHHHH
Confidence 56999988776554 222222333323333333445 6777777776544
No 295
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=28.39 E-value=1.2e+02 Score=22.59 Aligned_cols=48 Identities=6% Similarity=0.003 Sum_probs=31.9
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 63 (173)
.....+|++|+|..... .+...+...++.+.... -..+-+|.|++|..
T Consensus 220 ~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g---~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 220 IVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG---IPVKGVILNSIFRR 267 (286)
T ss_dssp HHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT---CCCCEEEEEEECCC
T ss_pred HHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC---CCEEEEEEcCcccc
Confidence 34567999999998754 34566666666665532 23456788999864
No 296
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=28.33 E-value=1.2e+02 Score=19.37 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=38.7
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
..|++|+=+++.+.+.++ ++..++.....+.+|+|++....| .+.... +...|...|-. ... +
T Consensus 51 ~~dlii~D~~l~~~~g~~----~~~~lr~~~~~~~~pii~~s~~~~--------~~~~~~-~~~~g~~~~l~---KP~-~ 113 (154)
T 3gt7_A 51 RPDLIISDVLMPEMDGYA----LCRWLKGQPDLRTIPVILLTILSD--------PRDVVR-SLECGADDFIT---KPC-K 113 (154)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHHSTTTTTSCEEEEECCCS--------HHHHHH-HHHHCCSEEEE---SSC-C
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCCcCCCCEEEEECCCC--------hHHHHH-HHHCCCCEEEe---CCC-C
Confidence 356666655555544443 334444432225789888876554 222222 33445543332 233 5
Q ss_pred HHHHHHHHHHHHhc
Q psy2792 96 IYQAFDHLLTESRG 109 (173)
Q Consensus 96 v~~lf~~l~~~i~~ 109 (173)
.+++...+...+..
T Consensus 114 ~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 114 DVVLASHVKRLLSG 127 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666555443
No 297
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=28.14 E-value=57 Score=24.45 Aligned_cols=46 Identities=11% Similarity=-0.032 Sum_probs=28.8
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLE 63 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~ 63 (173)
....+|.+|+|..... .+...+...++.+.+.. ++ +-+|.|++|..
T Consensus 233 l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~~----~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 233 VGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQAG----VNIKGAILNGVIKR 279 (299)
T ss_dssp HGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHTT----CCCCCEEEEECCCC
T ss_pred HHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhCC----CCeEEEEEeCCccC
Confidence 3467899999987643 24455555555555532 33 33778999854
No 298
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.08 E-value=1.1e+02 Score=18.78 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=11.4
Q ss_pred CCCcEEEE-EeCCCCC
Q psy2792 49 NNVPVMLL-ANKLDLE 63 (173)
Q Consensus 49 ~~~piilv-~NK~Dl~ 63 (173)
.++|++.+ ++|.+|-
T Consensus 56 ~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 56 SDIPVYEFEGTSVELG 71 (99)
T ss_dssp TTCCEEEECCCSCGGG
T ss_pred cCCCEEEeCCCHHHHH
Confidence 57997665 9998873
No 299
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=28.04 E-value=62 Score=24.80 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=38.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
..|-.+++.|.+... ++......+.+.. + ..+|+.||.|-.. ....+...+...+.++..++ +|+ +
T Consensus 241 ~~de~llvLDa~t~~---~~~~~~~~~~~~~---~-it~iilTKlD~~a----~~G~~l~~~~~~~~pi~~i~--~Ge-~ 306 (328)
T 3e70_C 241 KPNLVIFVGDALAGN---AIVEQARQFNEAV---K-IDGIILTKLDADA----RGGAALSISYVIDAPILFVG--VGQ-G 306 (328)
T ss_dssp CCSEEEEEEEGGGTT---HHHHHHHHHHHHS---C-CCEEEEECGGGCS----CCHHHHHHHHHHTCCEEEEE--CSS-S
T ss_pred cCCCCEEEEecHHHH---HHHHHHHHHHHhc---C-CCEEEEeCcCCcc----chhHHHHHHHHHCCCEEEEe--CCC-C
Confidence 468888999976542 2233333333321 2 3467789999532 12334555666677766665 665 5
Q ss_pred HHH
Q psy2792 96 IYQ 98 (173)
Q Consensus 96 v~~ 98 (173)
|++
T Consensus 307 v~d 309 (328)
T 3e70_C 307 YDD 309 (328)
T ss_dssp TTC
T ss_pred ccc
Confidence 543
No 300
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=27.91 E-value=75 Score=22.68 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=32.3
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEe
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLAN 58 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 58 (173)
.++|++.+.++.....+...+...++.+++.....++|+++-|.
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 36888888888888888888888888888764113577766554
No 301
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=27.02 E-value=70 Score=22.64 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=28.3
Q ss_pred HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
.+.-+++++.+|++..-.-..+- -..| ||....+..++|||+|--.
T Consensus 73 LReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 73 LHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp HHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETT
T ss_pred HHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECC
Confidence 34568889998888875544331 2334 5554443468999888543
No 302
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=26.74 E-value=38 Score=23.21 Aligned_cols=49 Identities=8% Similarity=-0.108 Sum_probs=26.8
Q ss_pred hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh---hCCCCCcEEEEEeC
Q psy2792 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANK 59 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~NK 59 (173)
..-+.++|++|+.+-+-.-.--..+..|++.+... ....+.|++++++-
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~ 114 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSST 114 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEE
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeC
Confidence 34577899999988765432223445565554321 01234566555554
No 303
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.21 E-value=1.6e+02 Score=20.22 Aligned_cols=47 Identities=6% Similarity=0.158 Sum_probs=30.8
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHH---------HHhhhCCCCCcEEEEEeCC
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQN---------LQRHRAVNNVPVMLLANKL 60 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~---------i~~~~~~~~~piilv~NK~ 60 (173)
.|+.+ +.|++.+|+++.+..+....|+.. +.... ....|.+++....
T Consensus 85 ~~l~~-nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~-~~~~P~l~ii~~~ 140 (178)
T 2ec4_A 85 SYLSQ-NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQK-TDQFPLFLIIMGK 140 (178)
T ss_dssp HHHHH-TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSC-STTCSEEEEECCC
T ss_pred HHHHc-CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcC-CCCCCeEEEEEcC
Confidence 44544 899999999998866655555532 11122 3678988887654
No 304
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=25.82 E-value=61 Score=24.76 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=31.9
Q ss_pred hhcccCcEEEEEEeCCCh------hhH----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDK------ESF----DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~------~s~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+.+||++|++...... +-+ .-+......+.+++ ++..++++.|=+|.
T Consensus 69 ~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~--p~a~vivvtNPvd~ 127 (321)
T 3p7m_A 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC--PNAFVICITNPLDI 127 (321)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC--CCcEEEEecCchHH
Confidence 457899999998755431 112 22345566666766 67778888887774
No 305
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=25.76 E-value=70 Score=22.97 Aligned_cols=48 Identities=10% Similarity=-0.059 Sum_probs=30.9
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh------------CCCCCcEEEEEeCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR------------AVNNVPVMLLANKL 60 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~piilv~NK~ 60 (173)
-+..||++|+++-+-.-.-=..++.|++.+.... ...+.+++++.+--
T Consensus 89 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g 148 (228)
T 3tem_A 89 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 148 (228)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECS
T ss_pred HHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCC
Confidence 4789999999998765432344577888874321 12456777766543
No 306
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=25.56 E-value=76 Score=19.80 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=12.6
Q ss_pred EEEEcccCCcccHHHHHHHHHHHH
Q psy2792 84 FHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 84 ~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
+|++.. +.. ...++...|...+
T Consensus 36 VFe~~l-t~~-~~~~l~~~L~~~i 57 (101)
T 2ivy_A 36 VFMGDL-NSS-RLKDVEAGLKIIG 57 (101)
T ss_dssp EEEEEE-CHH-HHHHHHHHHHHHT
T ss_pred EEEEEc-CHH-HHHHHHHHHHHHh
Confidence 566544 444 5666666666555
No 307
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=25.05 E-value=28 Score=23.48 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=28.2
Q ss_pred CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792 48 VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES 107 (173)
Q Consensus 48 ~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i 107 (173)
..++|++.+.+|.+| +...-.......+-+-...+. ++.+++..+.+.+
T Consensus 91 ~~~VP~~~v~sk~eL----------G~a~Gk~~~vs~vaI~~~~~s-~i~~~~~~~~~~i 139 (144)
T 2jnb_A 91 DKNVPYVFVRSKQAL----------GRACGVSRPVIACSVTIKEGS-QLKQQIQSIQQSI 139 (144)
T ss_dssp GGCCCCEEESCSHHH----------HHHHTCSSCCSEEEEECCTTC-TTHHHHHHHHHHH
T ss_pred HhCCCEEEECCHHHH----------HHHhCCCCceEEEEEEeCCcH-HHHHHHHHHHHHH
Confidence 357999988877664 333333334333444333445 6777777776554
No 308
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.00 E-value=1.3e+02 Score=18.67 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=23.9
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
..|++|+=+++.+...++ ++..++... +.+|+|++....|
T Consensus 49 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~--~~~~ii~ls~~~~ 88 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMD----ILREIKKIT--PHMAVIILTGHGD 88 (143)
T ss_dssp TCCEEEEESCCSSSCHHH----HHHHHHHHC--TTCEEEEEECTTC
T ss_pred CCCEEEEeCCCCCCcHHH----HHHHHHHhC--CCCeEEEEECCCC
Confidence 567777766655544444 333444433 6789888876655
No 309
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=24.97 E-value=89 Score=19.91 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=23.5
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEE
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLL 56 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 56 (173)
.-++++|++|++....... ..|+..-.+.....+.|++.|
T Consensus 34 ~~I~~~~~vIvL~G~~t~~-----s~wv~~EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTR-----RDEILGAVDLARKSSKPIITV 73 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTS-----HHHHHHHHHHHTTTTCCEEEE
T ss_pred CccccCCEEEEEeCCCcCC-----ChHHHHHHHHHHHcCCCEEEE
Confidence 3477899999888765432 234432222222367887766
No 310
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=24.95 E-value=2.2e+02 Score=21.43 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=40.3
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE 86 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 86 (173)
.++|+++++--.-...+-+.+..|+..+.+.. ++|+++--+..++ +.+...++++.-++-.+-
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn~g~~l------~~~~~~~La~~pnIvgiK 167 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL---DFPSLVYFKDPEI------SDRVLVDLAPLQNLVGVK 167 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH---TSCEEEEECCTTS------CTHHHHHHTTCTTEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC---CCCEEEEeCCCCC------CHHHHHHHHcCCCEEEEE
Confidence 37999998755544446677888888887765 4898775434443 456666676433343333
No 311
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.70 E-value=1.3e+02 Score=18.69 Aligned_cols=24 Identities=13% Similarity=0.469 Sum_probs=14.3
Q ss_pred HHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 38 TLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 38 ~~~~i~~~~~~~~~piilv~NK~D 61 (173)
++..+++....+++|+|++....|
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 69 VMSAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp HHHHHHSSSTTTTCCEEEEETTCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCC
Confidence 444555522236789888876555
No 312
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=24.50 E-value=1.7e+02 Score=20.03 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=32.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 20 CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 20 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
+|+|.+.. ..+..++...++.+.+ .++++ -+|.|++|-. .....+....+.+..+.+++
T Consensus 141 vi~v~~~~-~~~~~~~~~~i~~l~~----~~~~i~gvvlN~~~~~--~~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 141 VILVVGVK-LGCINHAMLTAQVIQH----AGLTLAGWVANDVTPP--GKRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp EEEEEECS-TTHHHHHHHHHHHHHH----TTCCEEEEEEECCSSC--CTTHHHHHHHHHHHSSSCEE
T ss_pred EEEEecCC-CCcHHHHHHHHHHHHH----CCCcEEEEEEeCCCCc--hhhHHHHHHHHHHHcCCCEE
Confidence 66776653 4566666666666553 34554 4788998853 11222333444444565554
No 313
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=24.32 E-value=59 Score=24.50 Aligned_cols=50 Identities=8% Similarity=0.168 Sum_probs=31.4
Q ss_pred hhhcccCcEEEEEEeCCChh---h---H----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 11 TAMICWADGCIIVYSLIDKE---S---F----DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 11 ~~y~~~ad~iilv~d~~~~~---s---~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
..-+.+||++|++....... . + .-+......+.+++ ++..++++.|=+|.
T Consensus 64 ~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~--p~a~iivvsNPvd~ 123 (294)
T 1oju_A 64 YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA--PESKILVVTNPMDV 123 (294)
T ss_dssp GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS--TTCEEEECSSSHHH
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEeCCcchH
Confidence 34578999999987655321 1 1 12234455566654 67778888887774
No 314
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.27 E-value=1.2e+02 Score=18.27 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=22.3
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
..|++|+=+++.+.+.++ .+..++.....+.+|+|++....|.
T Consensus 47 ~~dlii~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 47 GYDAVFIDLNLPDTSGLA----LVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp CCSEEEEESBCSSSBHHH----HHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhhhccCCCCEEEEECCcch
Confidence 356666655555444443 3334444321256787777766653
No 315
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=23.92 E-value=82 Score=23.69 Aligned_cols=47 Identities=23% Similarity=0.150 Sum_probs=29.6
Q ss_pred hcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 13 MICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 13 y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
-+.+||++|++..+.. ++...........+..+. ++..++++.|=+|
T Consensus 69 a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~--~~~iii~~sNp~~ 125 (317)
T 2ewd_A 69 DISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC--PNAFVICITNPLD 125 (317)
T ss_dssp GGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC--TTSEEEECCSSHH
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC--CCcEEEEeCChHH
Confidence 4679999999874322 233444456677777765 4666666666444
No 316
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=29.47 E-value=17 Score=25.72 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=25.3
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCcEEEEEe
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLAN 58 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~N 58 (173)
.-+..||++|++.-.-+..--..++.|++.+.... ...+.|+.+|++
T Consensus 69 ~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~t 117 (199)
T 3s2y_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTA 117 (199)
Confidence 35678899998876654322223345555544310 113566666654
No 317
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=23.55 E-value=60 Score=22.06 Aligned_cols=41 Identities=15% Similarity=-0.153 Sum_probs=23.8
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 59 (173)
.++.||++|.++|.+++++=...+- -.... .++|++++-.+
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~Ei----GyA~A--~gkPVv~~~~~ 115 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMEL----GYALS--QGKYVLLVIPD 115 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHH----HHHHH--TTCEEEEEECG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHH----HHHHH--CCCeEEEEEcC
Confidence 4778999999998755443221111 11111 46888887644
No 318
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=23.52 E-value=88 Score=23.61 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=29.5
Q ss_pred hcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 13 MICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
-+.+||++|+....... .+..-+......+.+++ ++..+|++.|=+|
T Consensus 64 a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~--p~a~iiv~tNPv~ 120 (308)
T 2d4a_B 64 DMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA--KDAIVVITTNPVD 120 (308)
T ss_dssp GGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCSSHH
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC--CCeEEEEeCCchH
Confidence 48899999998655431 12222345566666665 6666777777555
No 319
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=23.20 E-value=89 Score=24.22 Aligned_cols=66 Identities=5% Similarity=-0.050 Sum_probs=37.4
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCCHHHHHHHhhh-cCCe
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVDESLGRSTAVK-YNCT 83 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~ 83 (173)
-+.++|++|++..+-...-...+..|++.+.... . .+.+++++++--.. . . ..+....++.. .|+.
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~-~~~~K~~~~~~t~g~~-~-~--a~~~l~~~l~~~~g~~ 371 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLT-LIKGKPAFAFGAFGWS-N-R--AVPDIVAELRDGCKAD 371 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHT-TTTTSBEEEEEEESSS-C-C--HHHHHHHHHHHTSCCB
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhc-ccCCCEEEEEEecCCC-c-h--hHHHHHHHHHhhcCcE
Confidence 4668999999877655332334566666655422 2 35677777764321 1 1 23445555666 5644
No 320
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=23.13 E-value=69 Score=24.40 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=29.3
Q ss_pred hhcccCcEEEEEEeCCChh---h---H----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDKE---S---F----DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~---s---~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+.+||++|++....... . | .-+..+...+.+++ ++.-++++.|=+|.
T Consensus 65 ~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~--p~a~vivvtNPvd~ 123 (314)
T 3nep_X 65 GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS--PDSTIIVVANPLDV 123 (314)
T ss_dssp GGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC--TTCEEEECCSSHHH
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC--CCcEEEecCCchhH
Confidence 3478999999987654321 1 1 12234445555554 67778888887774
No 321
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=22.85 E-value=1.1e+02 Score=20.62 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=29.0
Q ss_pred hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCC
Q psy2792 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL 60 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 60 (173)
.+.+.|.+||.+.+-.-.-...+..|++.+ ...+.+++++++-.
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g 127 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSG 127 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECS
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecC
Confidence 467899999999885433233455666554 13567788888764
No 322
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=22.78 E-value=76 Score=24.17 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.1
Q ss_pred hhcccCcEEEEEEeCCCh------hhH----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDK------ESF----DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~------~s~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+.+||++|++...... +-+ .-+......+.+++ ++.-++++.|=+|.
T Consensus 74 ~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~--p~a~vlvvsNPvd~ 132 (315)
T 3tl2_A 74 ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS--PNAIIVVLTNPVDA 132 (315)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCSSHHH
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEECCChHHH
Confidence 458899999998755432 112 12344556666665 66778888887774
No 323
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.74 E-value=1.4e+02 Score=18.30 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=20.6
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
..|++|+=++..+...++ ++..+++.. +.+|+|++....|
T Consensus 51 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~--~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLE----MLDRIKAGG--AKPYVIVISAFSE 90 (137)
T ss_dssp CCSEEEECSSCSSSCHHH----HHHHHHHTT--CCCEEEECCCCCC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcC--CCCcEEEEecCcC
Confidence 356665544444433333 334444433 5677777655544
No 324
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=22.63 E-value=1.2e+02 Score=18.59 Aligned_cols=71 Identities=11% Similarity=0.014 Sum_probs=38.5
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
..|++|+=+++.+...++ ++..++... +.+|+|++....| .+.... +...|...|-. ... +
T Consensus 59 ~~dlvi~D~~l~~~~g~~----~~~~l~~~~--~~~~ii~~s~~~~--------~~~~~~-~~~~g~~~~l~---KP~-~ 119 (135)
T 3snk_A 59 RPGIVILDLGGGDLLGKP----GIVEARALW--ATVPLIAVSDELT--------SEQTRV-LVRMNASDWLH---KPL-D 119 (135)
T ss_dssp CCSEEEEEEETTGGGGST----THHHHHGGG--TTCCEEEEESCCC--------HHHHHH-HHHTTCSEEEE---SSC-C
T ss_pred CCCEEEEeCCCCCchHHH----HHHHHHhhC--CCCcEEEEeCCCC--------HHHHHH-HHHcCcHhhcc---CCC-C
Confidence 467777777766544443 344455544 5789888876554 222222 33456543322 234 5
Q ss_pred HHHHHHHHHH
Q psy2792 96 IYQAFDHLLT 105 (173)
Q Consensus 96 v~~lf~~l~~ 105 (173)
.+++...+..
T Consensus 120 ~~~L~~~i~~ 129 (135)
T 3snk_A 120 GKELLNAVTF 129 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 325
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=22.53 E-value=1.1e+02 Score=18.61 Aligned_cols=76 Identities=9% Similarity=-0.022 Sum_probs=37.8
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
..|++|+=+++.+.+.++ ++..+++....+++|+|++....|.. . ..+...|...|-. ... +
T Consensus 47 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~~s~~~~~~--------~--~~~~~~g~~~~l~---KP~-~ 108 (133)
T 3nhm_A 47 PPDVLISDVNMDGMDGYA----LCGHFRSEPTLKHIPVIFVSGYAPRT--------E--GPADQPVPDAYLV---KPV-K 108 (133)
T ss_dssp CCSEEEECSSCSSSCHHH----HHHHHHHSTTTTTCCEEEEESCCC---------------TTSCCCSEEEE---SSC-C
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCccCCCCEEEEeCCCcHh--------H--HHHhhcCCceEEe---ccC-C
Confidence 456666655444433343 33445544222578988887655421 1 2233445443322 234 5
Q ss_pred HHHHHHHHHHHHhc
Q psy2792 96 IYQAFDHLLTESRG 109 (173)
Q Consensus 96 v~~lf~~l~~~i~~ 109 (173)
.+++...|...+..
T Consensus 109 ~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 109 PPVLIAQLHALLAR 122 (133)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 67777766655543
No 326
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=22.25 E-value=73 Score=23.93 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=27.4
Q ss_pred hcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 13 MICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
-+.+||++|++...... ....-+......+.+++ ++..++++.|=+|+
T Consensus 64 a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~--p~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 64 ELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA--PDAVLLVTSNPVDL 121 (304)
T ss_dssp GGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC--SSSEEEECSSSHHH
T ss_pred HhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC--CCeEEEEecCchHH
Confidence 47899999998754321 22333345556666664 56666666676654
No 327
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.15 E-value=1.1e+02 Score=18.91 Aligned_cols=78 Identities=8% Similarity=0.021 Sum_probs=36.1
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA 95 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~ 95 (173)
..|++|+=+++.+...++ ++..++.....+++|+|++....| .......+...|...|-. ... +
T Consensus 50 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~--------~~~~~~~~~~~g~~~~l~---kP~-~ 113 (140)
T 3grc_A 50 PYAAMTVDLNLPDQDGVS----LIRALRRDSRTRDLAIVVVSANAR--------EGELEFNSQPLAVSTWLE---KPI-D 113 (140)
T ss_dssp CCSEEEECSCCSSSCHHH----HHHHHHTSGGGTTCEEEEECTTHH--------HHHHHHCCTTTCCCEEEC---SSC-C
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCcccCCCCEEEEecCCC--------hHHHHHHhhhcCCCEEEe---CCC-C
Confidence 356666544444433333 334444421125688877654333 112221233445443322 223 5
Q ss_pred HHHHHHHHHHHHhc
Q psy2792 96 IYQAFDHLLTESRG 109 (173)
Q Consensus 96 v~~lf~~l~~~i~~ 109 (173)
.+++...|...+..
T Consensus 114 ~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 114 ENLLILSLHRAIDN 127 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66777666655543
No 328
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=22.15 E-value=82 Score=23.96 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=30.6
Q ss_pred hhcccCcEEEEEEeCCChh---h---H----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDKE---S---F----DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~---s---~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+.+||++|++-...... . | .-+......+.+++ ++.-++++.|=+|.
T Consensus 65 ~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~--p~a~vlvvtNPvd~ 123 (312)
T 3hhp_A 65 PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC--PKACIGIITNPVNT 123 (312)
T ss_dssp HHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--TTSEEEECSSCHHH
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCcEEEEecCcchh
Confidence 3588999999987654321 1 1 12234555566665 56678888887774
No 329
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=22.10 E-value=1e+02 Score=20.83 Aligned_cols=35 Identities=6% Similarity=-0.089 Sum_probs=26.0
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792 49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV 87 (173)
Q Consensus 49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 87 (173)
.+.|+|++|..+.... ..++..++++..+++++.+
T Consensus 34 AkrPvil~G~g~~~~~----a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 34 AKRPLLMVGTLALDPE----LLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp CSSEEEEECSTTCCHH----HHHHHHHHHHHHTCCEEEC
T ss_pred CCCCEEEECCCccchh----HHHHHHHHHHHhCCCEEEC
Confidence 4589999999876321 2456788999999998755
No 330
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=21.89 E-value=1.1e+02 Score=21.01 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=14.2
Q ss_pred hcccCcEEEEEEeCCChh
Q psy2792 13 MICWADGCIIVYSLIDKE 30 (173)
Q Consensus 13 y~~~ad~iilv~d~~~~~ 30 (173)
.+++||++|.++|...++
T Consensus 66 ~i~~aD~viA~ldg~~~D 83 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTID 83 (162)
T ss_dssp HHHTCSEEEEECCSSSCC
T ss_pred HHHHCCEEEEECCCCCCC
Confidence 478999999999876443
No 331
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=21.88 E-value=1.2e+02 Score=18.47 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=21.3
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
.|++|+=+++.+...++ ++..+++.. +.+|+|++....+
T Consensus 47 ~dlvi~D~~l~~~~g~~----~~~~l~~~~--~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIE----VIRHLAEHK--SPASLILISGYDS 85 (135)
T ss_dssp TEEEEEECCTTTTHHHH----HHHHHHHTT--CCCEEEEEESSCH
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhCC--CCCCEEEEEeccc
Confidence 46555555444433333 344455543 6788888765443
No 332
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.65 E-value=1.4e+02 Score=18.01 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=23.0
Q ss_pred cCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 16 WADGCIIVYSLID-KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 16 ~ad~iilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
..|++|+=++..+ ...++ .+..++... +.+|+|++....+.
T Consensus 50 ~~dlvi~d~~l~~~~~g~~----~~~~l~~~~--~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQ----VARVAREID--PNMPIVYISGHAAL 91 (132)
T ss_dssp CCCEEEEESCCSSSSCHHH----HHHHHHHHC--TTCCEEEEESSCCT
T ss_pred CCCEEEEeeeCCCCCCHHH----HHHHHHhcC--CCCCEEEEeCCccH
Confidence 4577666555543 33343 233444433 57898888776653
No 333
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=21.37 E-value=1e+02 Score=23.55 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=32.3
Q ss_pred hhcccCcEEEEEEeCCCh------hhH----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792 12 AMICWADGCIIVYSLIDK------ESF----DYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~------~s~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 62 (173)
.-+.+||++|++...... +-+ .-+..+...+.+++ ++..++++.|=+|.
T Consensus 71 ~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~--p~a~iivvtNPvd~ 129 (324)
T 3gvi_A 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA--PEAFVICITNPLDA 129 (324)
T ss_dssp GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC--CCeEEEecCCCcHH
Confidence 468899999998654321 112 22344556666665 67788888988775
No 334
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=21.35 E-value=1.3e+02 Score=17.47 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=19.5
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
.|++|+=++..+...++ .+..+.+....+.+|+|++....+
T Consensus 46 ~dlii~d~~~~~~~~~~----~~~~l~~~~~~~~~~ii~~~~~~~ 86 (119)
T 2j48_A 46 PIVILMAWPPPDQSCLL----LLQHLREHQADPHPPLVLFLGEPP 86 (119)
T ss_dssp CSEEEEECSTTCCTHHH----HHHHHHHTCCCSSCCCEEEESSCC
T ss_pred CCEEEEecCCCCCCHHH----HHHHHHhccccCCCCEEEEeCCCC
Confidence 46555544443333332 233344332124677777766555
No 335
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=20.82 E-value=2.6e+02 Score=20.73 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=40.3
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEE----eCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLA----NKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~----NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.++|+++++--.-...+-+.+..|+..+.+.. ++|+++-- ++.|+ +.+...++++.-++-.+
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~---~lPiilYn~P~~tg~~l------~~~~~~~La~~pnivgi 161 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADAV---KLPVVLYNVPSRTNMTI------EPETVEILSQHPYIVAL 161 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH---CSCEEEEECHHHHSCCC------CHHHHHHHHTSTTEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCCEEEEecccccCCCC------CHHHHHHHhcCCCEEEE
Confidence 37999999866544456677788888887754 58988652 24554 46666777753333333
No 336
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=20.77 E-value=48 Score=24.93 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=38.6
Q ss_pred hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhh----hCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCe
Q psy2792 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH----RAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCT 83 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 83 (173)
.-+..||++||+.-.-+..-...++.|++.+... ....+.|+.+|++=-...... .......+....++.
T Consensus 119 e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~gg~~--a~~~Lr~~l~~lg~~ 192 (279)
T 2fzv_A 119 ALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQSFN--AVNTLRLLGRWMRMF 192 (279)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSCCCH--HHHHHHHHHHHTTCE
T ss_pred HHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCccHHH--HHHHHHHHHHhcCcE
Confidence 4578899999998765543234456666665432 112567888887742211111 123444555556654
No 337
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.74 E-value=1.5e+02 Score=17.97 Aligned_cols=42 Identities=17% Similarity=0.416 Sum_probs=22.7
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
..|++|+=+++.+...++ .+..+++....+.+|+|++....|
T Consensus 55 ~~dlvi~d~~~~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGRE----VLAEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp CCSEEEECSSCSSSCHHH----HHHHHHHSTTGGGSCEEEEESCCC
T ss_pred CCcEEEEecCCCcccHHH----HHHHHHcCcccccccEEEEecCCc
Confidence 456666655554433443 233444432114688888877655
No 338
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.50 E-value=2.7e+02 Score=20.79 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.3
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLL 56 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 56 (173)
.++|+++++--.-...+-+.+..++..+.+.. +++|+++-
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~~lPiilY 144 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA--DGLPMVVY 144 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC--CCCCEEEE
Confidence 48999999876655556677888888887765 34898764
No 339
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=20.19 E-value=1.1e+02 Score=23.15 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=29.6
Q ss_pred hhcccCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792 12 AMICWADGCIIVYSLIDKE----------SFDYAVSTLQNLQRHRAVNNVPVMLLANKLD 61 (173)
Q Consensus 12 ~y~~~ad~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 61 (173)
.-+.+||+||++..+.... ...-.......+.++. ++..++++.|=+|
T Consensus 70 ~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~--p~a~~iv~tNPv~ 127 (316)
T 1ldn_A 70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG--FQGLFLVATNPVD 127 (316)
T ss_dssp GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT--CCSEEEECSSSHH
T ss_pred HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC--CCCEEEEeCCchH
Confidence 3478999999996554321 1222344556666665 5666777777555
No 340
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=20.06 E-value=37 Score=21.64 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=16.6
Q ss_pred CCCccHhhhcccCcEEEEEEeCC
Q psy2792 5 LTEGTLTAMICWADGCIIVYSLI 27 (173)
Q Consensus 5 ~e~~~~~~y~~~ad~iilv~d~~ 27 (173)
.+..++..-+..||+||++-|..
T Consensus 46 ~~n~Lt~~~I~~Ad~VIiA~d~~ 68 (106)
T 2r48_A 46 VENKLTEEEIREADAIIIAADRS 68 (106)
T ss_dssp EESCCCHHHHHHCSEEEEEESSC
T ss_pred ccCCCCHHHHHhCCEEEEEeCCc
Confidence 33347777888888888888853
No 341
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.02 E-value=2.9e+02 Score=20.83 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=39.9
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792 15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH 85 (173)
Q Consensus 15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 85 (173)
.++|+++++--.-.+.+-+.+..++..+.+.. ++|+++ -| .... ++.+...++++.-++--+
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiil-Yn----~tg~-l~~~~~~~La~~pnIvgi 166 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL---DAPSII-YF----KDAH-LSDDVIKELAPLDKLVGI 166 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS---SSCEEE-EE----CCTT-SCTHHHHHHTTCTTEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCCEEE-Ee----CCCC-cCHHHHHHHHcCCCEEEE
Confidence 47999999866555456677788888887754 488765 45 2234 667777777743334333
Done!