RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2792
(173 letters)
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 100 bits (251), Expect = 3e-27
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
W +G ++VY + D+ SF+ + L + NV ++L+ NK DL+H RQV G
Sbjct: 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK 157
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A + C F+E S I + F L E R
Sbjct: 158 LATELACAFYECSACTGEGNITEIFYELCREVR 190
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 94.2 bits (235), Expect = 5e-25
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLRQVDESLG 73
WA ++VYS+ ++SFD + S L+ L H ++P +LL NKLD+ RQV ++ G
Sbjct: 91 WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+ A ++ C F EVS + + F + E+R
Sbjct: 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 92.2 bits (230), Expect = 3e-24
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
DG +IVYS+ DK SF++ Q + R + + P++L+ANK+DL HLR+V G+
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A KYN + E S D + + F L+ R
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 92.4 bits (230), Expect = 6e-24
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
D +IVYS+ D+ SF+ A L+R R ++P++L+ NK DL R+V S GR+
Sbjct: 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA 170
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
AV ++C F E S A + + F+ ++ + R
Sbjct: 171 CAVVFDCKFIETSAAVQH-NVKELFEGIVRQVR 202
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 91.9 bits (229), Expect = 6e-24
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
D +IV+S+ D+ SF TL L+ R +++PV+L+ NK DL R+V GR
Sbjct: 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH 155
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A +C E S A + + F+ + + R
Sbjct: 156 LAGTLSCKHIETSAALHH-NTRELFEGAVRQIR 187
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 89.5 bits (223), Expect = 2e-23
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+IVYS+ D+ SF+ A L+R ++VP++L+ NK DL R+V GR+
Sbjct: 78 GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC 137
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
AV ++C F E S + + F+ ++ + R
Sbjct: 138 AVVFDCKFIETSATLQH-NVAELFEGVVRQLR 168
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 89.5 bits (223), Expect = 3e-23
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
D +IV+S+ D+ SF TL L+ R +++PV+L+ NK DL R+V GR
Sbjct: 75 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH 134
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A +C E S A + + F+ + + R
Sbjct: 135 LAGTLSCKHIETSAALHH-NTRELFEGAVRQIR 166
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 88.7 bits (221), Expect = 5e-23
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
D +IVYS+ DK SF+ A L+R R ++VP++L+ NK DL R+V GR+
Sbjct: 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
AV ++C F E S A + + F+ ++ + R
Sbjct: 133 AVVFDCKFIETSAALHH-NVQALFEGVVRQIR 163
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 86.0 bits (214), Expect = 5e-22
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++
Sbjct: 76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A ++N + E S + + + F L+ E R
Sbjct: 136 ADQWNVNYVETSAKTRA-NVDKVFFDLMREIR 166
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 85.7 bits (213), Expect = 1e-21
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
G ++V+++ D++SF+ + R + ++ PV+L+ NK DLE RQV S +
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE-----SRGGPPS 113
++ + E S + +AF+ L+ + PPS
Sbjct: 141 GASHHVAYFEASAKLRL-NVDEAFEQLVRAVRKYQEQELPPS 181
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 85.3 bits (212), Expect = 2e-21
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++
Sbjct: 90 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A ++N + E S + + + F L+ E
Sbjct: 150 AEQWNVNYVETSAKTRA-NVDKVFFDLMRE 178
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 85.4 bits (212), Expect = 2e-21
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
D +IVYS+ D+ SF+ A L+R R ++P++L+ NK DL R+V S GR+
Sbjct: 80 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA 139
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTK 125
AV ++ F E S A + + F+ ++ + R S R+ + K
Sbjct: 140 XAVVFDXKFIETSAAVQH-NVKELFEGIVRQVRLRRDSKEKNERRLAYQK 188
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 84.4 bits (210), Expect = 2e-21
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
G I+VYSL++++SF + R + VPV+L+ NK+DLE R+V S GR+
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A ++ C F E S + + + F ++ +
Sbjct: 135 AEEWGCPFMETSAKSKT-MVDELFAEIVRQ 163
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 84.1 bits (209), Expect = 3e-21
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G I+VYS+ +SF+ L +P+ML+ NK DL R + G++
Sbjct: 78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL 137
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A +N F E S A + F ++ E+
Sbjct: 138 AESWNAAFLESS-AKENQTAVDVFRRIILEAE 168
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 84.2 bits (209), Expect = 6e-21
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
G ++VYS+ SF S Q L VPV+L+ NK DL R+V G+
Sbjct: 95 GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK 154
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + TF E S A + F ++ E
Sbjct: 155 LAESWGATFMESS-ARENQLTQGIFTKVIQE 184
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 83.8 bits (208), Expect = 8e-21
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV ++
Sbjct: 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A ++N + E S + + + F L+ E
Sbjct: 146 AEQWNVNYVETSAKTRA-NVDKVFFDLMRE 174
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 82.6 bits (205), Expect = 1e-20
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRS 75
I+VYS+ ++S + + + + V ++P+ML+ NK D R+V S +
Sbjct: 75 GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA 134
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A + C F E S N + + F LL +
Sbjct: 135 LARTWKCAFMETSAKLNH-NVKELFQELLNLEK 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 81.8 bits (203), Expect = 2e-20
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + ++VP++L+ NK DL R V+ +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y + E S + AF L+ E R
Sbjct: 134 ARSYGIPYIETSAKTRQ-GVEDAFYTLVREIR 164
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 80.2 bits (199), Expect = 1e-19
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A C++V+S D+ESF+ S + + ++P L+ NK+DL +
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGL 135
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F+ S + + F +L +
Sbjct: 136 AKRLKLRFYRTS-VKEDLNVSEVFKYLAEK 164
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 80.0 bits (198), Expect = 2e-19
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++++ L +++SF + + LQ H N ++L NK DLE R V E R
Sbjct: 94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL 153
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A KY + E S A N I A + LL
Sbjct: 154 AEKYGIPYFETS-AANGTNISHAIEMLLDL 182
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 79.6 bits (197), Expect = 2e-19
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+ VY + + SF + ++ ++H N++P +L+ NK DL QV L +
Sbjct: 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF 153
Query: 77 AVKYNCTFHEVS--VADNSPAIYQAFDHLLTE 106
A ++ E S +++ + F L +
Sbjct: 154 ADTHSMPLFETSAKNPNDNDHVEAIFMTLAHK 185
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 80.1 bits (198), Expect = 3e-19
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G +IVY + S++ L L+ + A +NV V L+ NK DL HLR V ++
Sbjct: 86 AVGALIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNK 136
A + F E S ++ + +AF+ L+ I++ + + G+
Sbjct: 145 AQENQLLFTETSALNSE-NVDKAFEELINT--------IYQKVSKHQMDLGDSSANGNAN 195
Query: 137 SPPTHQGGTVVVCNKSD 153
G T+ + +
Sbjct: 196 GASAPNGPTISLTPTPN 212
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 79.6 bits (197), Expect = 3e-19
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I++Y + ++ESF+ ++ + + +N V+L+ NK D+E R V GR
Sbjct: 81 AMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQL 139
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNK 136
A F E S A ++ + Q F+ L+ I + S+ + G
Sbjct: 140 ADHLGFEFFEAS-AKDNINVKQTFERLVDV--------ICEKMSESLDTADPAVTGAKQG 190
Query: 137 SPPTHQGG 144
T Q
Sbjct: 191 PQLTDQQA 198
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 79.2 bits (196), Expect = 3e-19
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G +++Y + ++ESF ++ + + +N V+L+ NK DLE R V GR
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRL 153
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S A + + Q F+ L+
Sbjct: 154 ADDLGFEFFEAS-AKENINVKQVFERLVDV 182
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 79.2 bits (196), Expect = 3e-19
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A +++Y + +K SFD + L + + A ++V +MLL NK+D H R V G
Sbjct: 84 AHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKL 142
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A +Y F E S A + AF + E
Sbjct: 143 AKEYGLPFMETS-AKTGLNVDLAFTAIAKE 171
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 79.7 bits (197), Expect = 4e-19
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++++ L ++SF + + LQ + N ++L+ NK DL R+V+E R
Sbjct: 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A KY + E S A + +A + LL
Sbjct: 168 ADKYGIPYFETS-AATGQNVEKAVETLLDL 196
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 78.8 bits (195), Expect = 5e-19
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++SFD + ++N++ H A +V M+L NK D+ RQV + G
Sbjct: 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL 139
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A+ Y F E S A + + AF L +
Sbjct: 140 ALDYGIKFMETS-AKANINVENAFFTLARD 168
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 77.9 bits (193), Expect = 6e-19
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
G +VYS+ + +F+ + + R + +VP++L+ NK DLE R V + G++
Sbjct: 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL 134
Query: 77 AVKY-NCTFHEVSVADNSPAIYQAFDHLLTE 106
A ++ NC F E S + + F L+ +
Sbjct: 135 ARQWCNCAFLESSAKSKI-NVNEIFYDLVRQ 164
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 78.4 bits (194), Expect = 7e-19
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
+G + V+++ + +SF + ++R + ++VP++L+ NK DL R VD
Sbjct: 92 TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHE 150
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A Y F E S + AF L+ E
Sbjct: 151 LAKSYGIPFIETSAKTRQ-GVEDAFYTLVRE 180
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 78.4 bits (194), Expect = 8e-19
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I++Y + ++ESF+ ++ + + +N V+L+ NK D+E R V G+
Sbjct: 96 AMGFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLL 154
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A + ++ QAF+ L+
Sbjct: 155 AEQLGFDFFEAS-AKENISVRQAFERLVDA 183
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 78.0 bits (193), Expect = 8e-19
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+G + V+++ + +SF+ + ++R + +VP++L+ NK DL R VD +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 134
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
A Y F E S + AF L+ E R
Sbjct: 135 ARSYGIPFIETSAKTRQ-GVDDAFYTLVREIR 165
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 78.1 bits (193), Expect = 1e-18
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 164
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S A N+ + Q+F + E
Sbjct: 165 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 193
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 78.1 bits (193), Expect = 1e-18
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ESF+ LQ + R+ A NV +L+ NK DL + VD + +
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S A N+ + Q+F + E
Sbjct: 148 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 176
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 78.1 bits (193), Expect = 1e-18
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+ G IIVY + D+ESF+ LQ + R+ A + V +L+ NK DL+ R V+ + +
Sbjct: 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S A +S + AF + +
Sbjct: 140 ADANKMPFLETS-ALDSTNVEDAFLTMARQ 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 77.6 bits (192), Expect = 2e-18
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V R+
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K +F E S A +S + AF +LTE
Sbjct: 161 AEKNGLSFIETS-ALDSTNVEAAFQTILTE 189
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 77.7 bits (192), Expect = 2e-18
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHR-AVNNVPVMLLANKLDLEHLRQVDESLGRS 75
I+V+S+ K+S + + + + + +V ++PVML+ NK D R+VD ++
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQA 138
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTK 125
A ++ C F E S N + + F LLT S ++ K
Sbjct: 139 VAQEWKCAFMETSAKMNY-NVKELFQELLTLETRRNMSLNIDGKRSGKQK 187
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 77.2 bits (191), Expect = 2e-18
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL--EHLRQVDESLG 73
W D + V+SL D+ SF + L R + VP++L+ + + + R +D+S
Sbjct: 85 WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA 144
Query: 74 RSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106
R + CT++E + + F + +
Sbjct: 145 RKLSTDLKRCTYYETCATYGL-NVERVFQDVAQK 177
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 77.3 bits (191), Expect = 2e-18
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++V+ L +++ L+ L H A + VML+ NK DL R+V R
Sbjct: 98 AVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMF 156
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A F E S A +S + AF+ +L E
Sbjct: 157 AENNGLLFLETS-ALDSTNVELAFETVLKE 185
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 77.3 bits (191), Expect = 2e-18
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A+ I+ Y + +ESF L+ ++++ A N V +L+ NK+DL R+V +
Sbjct: 99 ANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEF 157
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ + + E S A S + + F L
Sbjct: 158 SEAQDMYYLETS-AKESDNVEKLFLDLACR 186
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 76.8 bits (190), Expect = 2e-18
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLRQVDESLGR 74
A G ++VY + + +SF+ +++ + V L+ NK+DLEH+R +
Sbjct: 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHL 139
Query: 75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ + H VS A +++ F + E
Sbjct: 140 RFCQENGFSSHFVS-AKTGDSVFLCFQKVAAE 170
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 76.8 bits (190), Expect = 2e-18
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
G I+VY + ESF L + ++ ++V +L+ NK D + V+
Sbjct: 82 THGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKF 139
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + E S A + + + F+ +
Sbjct: 140 AGQMGIQLFETS-AKENVNVEEMFNCITEL 168
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 76.1 bits (188), Expect = 4e-18
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +E+++ + L + + A N+ ++L NK DL+ R+V
Sbjct: 83 AAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRF 141
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A + +AF +
Sbjct: 142 AQENELMFLETS-ALTGENVEEAFVQCARK 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 76.6 bits (189), Expect = 5e-18
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V R+
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 136
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K N +F E S A +S + +AF ++LTE
Sbjct: 137 AEKNNLSFIETS-ALDSTNVEEAFKNILTE 165
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 75.3 bits (186), Expect = 8e-18
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + + ++++ S L + + N ++L+ NK DLE R V +
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQF 146
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A + AF +
Sbjct: 147 AEENGLLFLEAS-AKTGENVEDAFLEAAKK 175
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 74.1 bits (183), Expect = 2e-17
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
++G I+VY + D++SF + ++ L++ N + + ++ NK+DLE R V S
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESY 137
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + S A + I + F L
Sbjct: 138 AESVGAKHYHTS-AKQNKGIEELFLDLCKR 166
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 74.6 bits (184), Expect = 2e-17
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +E+F++ S L++ ++H + +N+ +ML+ NK DLE R V G +
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAF 152
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A ++ F E S A + + +AF + E
Sbjct: 153 AREHGLIFMETS-AKTACNVEEAFINTAKE 181
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 74.1 bits (183), Expect = 3e-17
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A IIV+ + ++ SF+ A +Q LQ N+ + L NK DL R+V ++
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTY 143
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A + + + F +
Sbjct: 144 AQENGLFFMETS-AKTATNVKEIFYEIARR 172
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 74.7 bits (184), Expect = 3e-17
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+ + + + + ++ Q N P+++ ANK+D+++ +++ + L
Sbjct: 85 ASGAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEV 143
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
N + E+S A + F HL
Sbjct: 144 LKGKNYEYFEIS-AKTAHNFGLPFLHLARI 172
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 74.2 bits (183), Expect = 3e-17
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++VY + +E+++ + L + + A N+ V+L NK DL+ R+V
Sbjct: 98 AAGALLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRF 156
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A + +AF
Sbjct: 157 AQENELMFLETS-ALTGENVEEAFLKCART 185
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 73.7 bits (182), Expect = 3e-17
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+VY + ++ESF A + ++ LQR A N+ + L NK DL + R VD +S
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A S + + F + +
Sbjct: 138 ADDNSLLFMETS-AKTSMNVNEIFMAIAKK 166
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 73.4 bits (181), Expect = 4e-17
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+ ++VY + + SF + +++ R ++V +ML+ NK DL RQV G
Sbjct: 87 STVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERK 145
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + N F E S A + Q F +
Sbjct: 146 AKELNVMFIETS-AKAGYNVKQLFRRVAAA 174
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 73.4 bits (181), Expect = 7e-17
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+ +IVY + ++SF ++ L+ H N+ + + NK DL +R+V +
Sbjct: 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCDLSDIREVPLKDAKEY 154
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A E S A N+ I + F + +
Sbjct: 155 AESIGAIVVETS-AKNAINIEELFQGISRQ 183
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 73.5 bits (181), Expect = 7e-17
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL------RQVDE 70
ADG +++Y + ++SF + ++ A VP+ML+ NK D+ + V
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPG 159
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
G A+ Y F E S A + I +A HL E
Sbjct: 160 HFGEKLAMTYGALFCETS-AKDGSNIVEAVLHLARE 194
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 72.5 bits (179), Expect = 8e-17
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+ IIVY + +E+F + ++ L++H ++ V + NK DL +R+V E +
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY 137
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A N+ I + F +
Sbjct: 138 ADSIHAIFVETS-AKNAININELFIEISRR 166
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 73.5 bits (181), Expect = 8e-17
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
+ ++VY + + SF + +++ R ++V +ML+ NK DL RQV G
Sbjct: 89 STVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERK 147
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + N F E S A + Q F +
Sbjct: 148 AKELNVMFIETS-AKAGYNVKQLFRRVAAA 176
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 73.1 bits (180), Expect = 9e-17
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + +++F + L L+ + N++ ML+ NK+D E+ R+VD + G
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKF 146
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K++ F E S A + AF+ L+ +
Sbjct: 147 ARKHSMLFIEAS-AKTCDGVQCAFEELVEK 175
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 73.0 bits (180), Expect = 9e-17
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + KE+FD ++ + ++ A + ++L+ NKLD E R++ G
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKF 157
Query: 77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A ++ + + F L+ +
Sbjct: 158 AQQITGMRFCEAS-AKDNFNVDEIFLKLVDD 187
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 71.8 bits (177), Expect = 1e-16
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ +F + + H A + ++L+ NK D+E R V G +
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDME-TRVVTADQGEAL 133
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A N + + F L
Sbjct: 134 AKELGIPFIESS-AKNDDNVNEIFFTLAKL 162
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 72.3 bits (178), Expect = 2e-16
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A+G I+ Y + + SF +++++++ A +N+ +L+ NK DL LR+V + +S
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSL 160
Query: 77 AVKYNC-TFHEVSVADNSPAIYQAFDHLLTE 106
A Y+ E S A +S + +AF + TE
Sbjct: 161 AEHYDILCAIETS-AKDSSNVEEAFLRVATE 190
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 72.0 bits (177), Expect = 3e-16
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G I+VY + D+ +F + + H A + ++L+ NK D+E R V G +
Sbjct: 93 AMGIILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDME-TRVVTADQGEAL 150
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S A N + + F L
Sbjct: 151 AKELGIPFIESS-AKNDDNVNEIFFTLAKL 179
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 71.2 bits (175), Expect = 6e-16
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLR-QVDESLG 73
I+V+ + ESF+ + + L+ R + +L+ANK DL R QV +
Sbjct: 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA 156
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ A F +VS F + T
Sbjct: 157 QDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 70.8 bits (174), Expect = 7e-16
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHLRQVDESLG 73
AD C++V+ + +F S R N P ++L NK+DLE+ + +
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
K N + E S A + + QAF +
Sbjct: 141 AWCYSKNNIPYFETS-AKEAINVEQAFQTIARN 172
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 68.8 bits (169), Expect = 3e-15
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHL-RQVDESL 72
AD C++VY + + SF+ S H + P ++L NK+D E + V E
Sbjct: 82 ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS 141
Query: 73 GRSTAVKY-NCTFHEVSVADNSPAIYQAFDHLLTE 106
+ A + S A N+ + AF+ +
Sbjct: 142 AQELAKSLGDIPLFLTS-AKNAINVDTAFEEIARS 175
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 67.9 bits (166), Expect = 1e-14
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A I+V+ + + + D A + + L+ +N ++L+ANK+D QVD +
Sbjct: 117 ATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK-FQVDILEVQKY 172
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A N F + S A I F L E
Sbjct: 173 AQDNNLLFIQTS-AKTGTNIKNIFYMLAEE 201
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 67.2 bits (165), Expect = 1e-14
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHLRQVDESLG 73
+D C++ +S+ D +SF + + + + + P ++L NK+D+ RQV
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEA 138
Query: 74 RSTAVKY-NCTFHEVSVADNSPAIYQAFDHLLTE 106
++ + + E S A ++ + AF+ +
Sbjct: 139 QAWCRDNGDYPYFETS-AKDATNVAAAFEEAVRR 171
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 66.5 bits (163), Expect = 2e-14
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVN--NVPVML--LANKLDLEHLRQVDES 71
WAD I V+SL D+ SF L R + + L +++ R V ++
Sbjct: 72 WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 131
Query: 72 LGRS-TAVKYNCTFHEVSVADN 92
R+ A C+++E
Sbjct: 132 RARALXADMKRCSYYETXATYG 153
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 66.6 bits (163), Expect = 3e-14
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A II++ + + ++ + ++L R N+P++L NK+D++ + +
Sbjct: 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK--SIVF 143
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
K N ++++S A ++ + F L +
Sbjct: 144 HRKKNLQYYDIS-AKSNYNFEKPFLWLARK 172
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 64.3 bits (156), Expect = 5e-13
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 18 DGCIIVY--SLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
DG ++ S +FD + + NL A P++++ K D R + ++ +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ K N E S N + AF L+
Sbjct: 224 LS-KKNLQVVETSARSNV-NVDLAFSTLVQL 252
Score = 27.3 bits (60), Expect = 2.5
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 146 VVVCNKSDLCRSRVLKRRQ 164
VVV K D R ++
Sbjct: 202 VVVLTKCDEGVERYIRDAH 220
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 62.3 bits (151), Expect = 4e-12
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
+ +++ D + L++++++ PV+++ NK+D +++
Sbjct: 121 RSSVYMLLL---DSRTDSNKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINE 175
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112
FH +S N + L +
Sbjct: 176 RFPAIENRFHRIS-CKNGDGVESIAKSLKSAVLHPDS 211
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 55.4 bits (134), Expect = 3e-10
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQ---VDESL 72
+ VY L ++ A+ L N++ ++ PV+L+ LD+ +Q +
Sbjct: 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKI 137
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ K N+ A L
Sbjct: 138 TKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 49.8 bits (119), Expect = 2e-08
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL---RQVDESLG 73
A ++VY + +SF A ++ L + ++ + L+ NK+D R+V G
Sbjct: 76 AQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEG 134
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + F E S + F + +
Sbjct: 135 EKLAEEKGLLFFETSAKTGE-NVNDVFLGIGEK 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-06
Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 76/224 (33%)
Query: 2 TIGLTEGTLTAMICWADGC---IIVYSLI----DKESF-DYAVSTLQNL-----QRHRAV 48
+G T G L + + A G ++ I ESF + L + + A
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 49 NNVPV------------------MLLANKLDLE----HLRQVDESLGRSTAVKYNCTFHE 86
N + ML + L E ++ + + L V E
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-------E 367
Query: 87 VSVADNSPAIYQAFDHL-LTESRGGPPSGIH----KIRKFSVTKMLG-TLIGGSNKSP-- 138
+S+ N +L ++ GPP ++ +RK L + I S +
Sbjct: 368 ISLV-NGA------KNLVVS----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 139 ---------PTH----QGGTVVVCNKSDLCRSRVLKRRQFLATP 169
P H + ++ DL ++ V + + P
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLI--NKDLVKNNVSFNAKDIQIP 458
Score = 30.4 bits (68), Expect = 0.30
Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 45/122 (36%)
Query: 12 AMIC--WADGCII---VYSLIDKESFDYAVS--------TLQNLQRHRAVNNVPVMLLAN 58
AMI DG + ++ I++ S Y T Q Q P + L
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQ--------PALTLME 1740
Query: 59 KLDLEHLRQVDESLGRSTAVKYNCTF--H---E----VSVADNSPAIYQAFDHL--LTES 107
K E L+ S G + + TF H E S+AD + + + L +
Sbjct: 1741 KAAFEDLK----SKG---LIPADATFAGHSLGEYAALASLAD---VM--SIESLVEVVFY 1788
Query: 108 RG 109
RG
Sbjct: 1789 RG 1790
Score = 28.1 bits (62), Expect = 2.1
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 35 AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
A+ T+ N+ + + ++ L L LE +V+ L
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLSLE---EVEGHL 1895
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 40.0 bits (94), Expect = 1e-04
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDL--------EHLRQ 67
AD ++ +SLI K S++ + + L+R NVP++L+ KLDL +H
Sbjct: 81 ADIFVLAFSLISKASYENVLKKWMPELRRFAP--NVPIVLVGTKLDLRDDKGYLADHTNV 138
Query: 68 VDESLGRSTAVKYNC-TFHEVS 88
+ + G + + E S
Sbjct: 139 ITSTQGEELRKQIGAAAYIECS 160
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 39.2 bits (91), Expect = 2e-04
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 17 ADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL-----------E 63
I V D E+ T+ + ++ + +K+D +
Sbjct: 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNP--DMNFEVFIHKVDGLSDDHKIETQRD 153
Query: 64 HLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLT 105
++ ++ L + K + +F+ S+ D+S I++AF ++
Sbjct: 154 IHQRANDDLADAGLEKLHLSFYLTSIYDHS--IFEAFSKVVQ 193
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 38.5 bits (90), Expect = 4e-04
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDL--EHLRQVDESLG 73
+D ++ +++ ++ SFD + ++ + ++ +L+ K+DL + V + G
Sbjct: 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEG 152
Query: 74 RSTAVKYNC-TFHEVS 88
K C + E S
Sbjct: 153 DDLCQKLGCVAYIEAS 168
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 37.5 bits (87), Expect = 7e-04
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL--- 72
+D ++ + + E+ D A+ + + + V+L+ K DL L
Sbjct: 99 SDAVLLCFDISRPETVDSALKKWRTEILDYCP--STRVLLIGCKTDLRTDLSTLMELSHQ 156
Query: 73 ---------GRSTAVKYNC-TFHEVSVADNSPAIYQAFD 101
G + A + + E S + +I+ F
Sbjct: 157 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 37.4 bits (87), Expect = 8e-04
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
A ++ + + SFD + + VP++++ K DL + + L R
Sbjct: 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRR 162
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH---LRQVDESLG 73
I V DK+ A L + + + + +++ ANK D +V + L
Sbjct: 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN 145
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHL 103
+ + S A I + D L
Sbjct: 146 LVELKDRSWSIVASS-AIKGEGITEGLDWL 174
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 36.6 bits (85), Expect = 0.001
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
AD I+ +SLI K S++ + L+ + VP++L+ KLDL +Q +
Sbjct: 80 ADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIVLVGTKLDLRDDKQFFIDHPGA 137
Query: 76 TAVKY 80
+
Sbjct: 138 VPITT 142
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 36.6 bits (85), Expect = 0.001
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
D ++ +S++ SF + ++ H P++L+ + DL +V L +
Sbjct: 92 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP--KAPIILVGTQSDLREDVKVLIELDK 148
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 36.7 bits (85), Expect = 0.001
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
D ++ +S+ +S + + ++ NVP++L+ANK DL V L R
Sbjct: 97 TDVILMCFSVDSPDSLENIPEKWVPEVKHFCP--NVPIILVANKKDLRSDEHVRTELAR 153
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH---LRQVDESLG 73
+ I+V D+E L + H + +++ ANK D++ + ++ + L
Sbjct: 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK 143
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 36.7 bits (85), Expect = 0.002
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
D +I +SL+ SF+ + ++ H N P++L+ KLDL + E L
Sbjct: 102 TDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKE 158
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 36.1 bits (84), Expect = 0.002
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH---LRQVDESLG 73
DG I V D++ LQ+L + +++ ANK DL + E+L
Sbjct: 86 TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE 145
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+ ++ S A + D LL +
Sbjct: 146 LDSIRSHHWRIQGCS-AVTGEDLLPGIDWLLDDIS 179
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 36.1 bits (84), Expect = 0.002
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
+ I+V D+E L + H + +++ ANK D++ V E
Sbjct: 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 142
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 36.3 bits (84), Expect = 0.002
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
D +I +SL+ SF+ + RH N P++L+ KLDL + E L
Sbjct: 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKE 133
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE 63
G I V D+E + A L + + + +++ ANK DL
Sbjct: 68 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
+ + D+E + + + L NL + +PV++L NK DL E
Sbjct: 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKE 144
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 35.5 bits (82), Expect = 0.003
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
+D +I + + E+ D + +Q N ++L+ K DL L
Sbjct: 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKMLLVGCKSDLRTDVSTLVELSN 135
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 35.4 bits (82), Expect = 0.004
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
G I V D+E + LQ + + + + +++ ANK D+ + V E
Sbjct: 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSE 150
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 36.0 bits (83), Expect = 0.004
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH 64
G I V D+E + A L + + + +++ ANK DL +
Sbjct: 233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 35.5 bits (82), Expect = 0.004
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
D ++ +S+ +S + ++ NVP++L+ NK DL L +
Sbjct: 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAK 153
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 34.9 bits (81), Expect = 0.005
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
D I V D++ F+ L L ++ VPV++ ANK DL E
Sbjct: 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE 137
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 34.7 bits (80), Expect = 0.006
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 17 ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
+D +I + + E+ D + +Q N ++L+ K DL L
Sbjct: 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKMLLVGCKSDLRTDVSTLVELSN 156
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 35.0 bits (80), Expect = 0.008
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 30 ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL-----------EHLRQVDESLGRSTAV 78
+ ++ + ++ + +L +K+D + +++ E L
Sbjct: 88 NAITNLAMIIEYAYKVNP--SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLD 145
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLT 105
+F+ S+ D+S IY+AF ++
Sbjct: 146 GVQVSFYLTSIFDHS--IYEAFSRIVQ 170
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 34.5 bits (80), Expect = 0.008
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
D I V D++ + S L + + +++ ANK D+E E
Sbjct: 75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE 128
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 34.5 bits (79), Expect = 0.011
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
G I V D++ D A L + R + + +++ ANK DL + E
Sbjct: 390 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 443
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 33.8 bits (78), Expect = 0.014
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
D I V D++ A L L + +++ ANK DL E
Sbjct: 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAE 143
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 33.7 bits (78), Expect = 0.014
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
+G + + D E FD A L L + +VP ++L NK+D + E
Sbjct: 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 144
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 33.4 bits (77), Expect = 0.019
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
+G + + D E + L +L + NVP+++L NK+D +
Sbjct: 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 146
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 33.2 bits (76), Expect = 0.019
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
D +I +S+++ SF V + NVP +L+ ++DL + L
Sbjct: 90 TDVFLICFSVVNPASFQN-VKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLND 146
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.9 bits (72), Expect = 0.077
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 16/102 (15%)
Query: 17 ADGCIIVYSLIDKESFD---YAVSTLQNLQRHRAVNNVPVMLLANKLDL-------EHLR 66
I V+ + E L+ L+++ + + +L +K+DL E +
Sbjct: 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQ 138
Query: 67 QVDESLGR--STAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ ++L S N S+ D S +Y+A+ ++
Sbjct: 139 IMMKNLSETSSEFGFPNLIGFPTSIWDES--LYKAWSQIVCS 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.6 bits (72), Expect = 0.088
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 22 IVY---SLIDKESFDYAVSTLQNL---QRHRAVNNVPVMLLANKLDL 62
+++ S +D + L ++ N + +++ NK +L
Sbjct: 122 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.3 bits (71), Expect = 0.11
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 22 IVY---SLIDKESFDYAVSTLQNL---QRHRAVNNVPVMLLANKLDL 62
+++ S +D + L ++ N + +++ NK +L
Sbjct: 86 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 30.9 bits (70), Expect = 0.14
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 17 ADGCIIVYSLID--KESFDYAVSTLQNLQR-----HRAVNNVPVMLLANKLDLEHLRQVD 69
DG + V D +++N++ +++VP+++ NK DL V+
Sbjct: 98 VDGIVFV---ADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE 154
Query: 70 E 70
Sbjct: 155 M 155
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 30.7 bits (70), Expect = 0.18
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLRQVDE 70
I V D+ A L L H +P++ ANK+DL +
Sbjct: 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVK 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.48
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 30/123 (24%)
Query: 5 LTEGTLTAMICWADGC-----IIV-----YSLIDKESFDYAVSTLQNLQR--HRAVNNVP 52
+ L + W D ++V YSL++K+ + +S + ++ + N
Sbjct: 387 IPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEY 443
Query: 53 VMLLANKLDLEH---LRQVD-ESLGRSTAVKYNCTF--HEVSVADNS------PAIYQAF 100
+ ++ ++H + D + L +Y + H + ++ ++ F
Sbjct: 444 AL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 101 DHL 103
L
Sbjct: 501 RFL 503
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 29.6 bits (66), Expect = 0.52
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQ-------RHRAVNNVPVMLLANKLDLEHLRQVD 69
D +I +SL+ SF +++ RH N P++L+ KLDL +
Sbjct: 227 TDVFLICFSLVSPASFH-------HVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTI 278
Query: 70 ESLGR 74
E L
Sbjct: 279 EKLKE 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.57
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 15/35 (42%)
Query: 63 EHLRQVDESLGRSTAVK-YNCTFHEVSVADNSPAI 96
+ L+++ SL K Y D++PA+
Sbjct: 20 QALKKLQASL------KLY--------ADDSAPAL 40
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 26.7 bits (60), Expect = 4.1
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 54 MLLANKLDLEHLRQVDESLGRS 75
L+ K L L +S
Sbjct: 123 KLMGKKGTFRDLGDSHPVLYQS 144
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 26.5 bits (58), Expect = 4.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 22 IVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
+V ++D FD+ S L L R V N V+L+ NK DL
Sbjct: 72 LVVKIVD--IFDFNGSWLPGLHRF--VGNNKVLLVGNKADL 108
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 26.4 bits (57), Expect = 6.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 37 STLQNLQRHRAVNNVPVMLLANKLDLE---HLRQ-VDESLGRSTAVKYNCTFHEVS 88
+ L L + + + L K + E +Q DE+L S K N H V
Sbjct: 1032 AGLPELTSVKDIQYLKDSLALGKSEEEALKQFKQKFDEALRESWTTKVNWMAHTVR 1087
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2;
solute-binding protein; 1.45A {Streptomyces
clavuligerus} PDB: 2wok_A 2wop_A*
Length = 562
Score = 26.2 bits (58), Expect = 7.7
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 132 GGSNKSPPTHQGGTVVVCNKSD 153
G+ +P +GGT+ + + +D
Sbjct: 21 VGALVNPSRRRGGTLRLVSSAD 42
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Mus
musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Length = 142
Score = 25.3 bits (55), Expect = 8.6
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 60 LDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLT 105
LE + E L +Y E+ + N +Y D +
Sbjct: 79 AYLEAIHNFVEVLN-----EYFHNVCELDLVFNFYKVYTVVDEMFL 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,516,296
Number of extensions: 136561
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 124
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)