RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2792
(173 letters)
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 58.4 bits (140), Expect = 8e-12
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
A G ++VY + +E+F++ S L++ ++H + +N+ +ML+ NK DLE R V G
Sbjct: 73 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEG 131
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ A ++ F E S + +AF + E
Sbjct: 132 EAFAREHGLIFMETSAKTAC-NVEEAFINTAKE 163
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 56.0 bits (134), Expect = 6e-11
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
A G ++VY + +++ L+ L+ H A +N+ +ML+ NK DL HLR V
Sbjct: 73 YYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE 131
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
R+ A K N +F E S D++ + +AF ++LTE
Sbjct: 132 ARAFAEKNNLSFIETSALDST-NVEEAFKNILTE 164
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 54.2 bits (129), Expect = 3e-10
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
I G I+VYSL++++SF + R + VPV+L+ NK+DLE R+V S G
Sbjct: 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
R+ A ++ C F E S + + + F ++ +
Sbjct: 132 RALAEEWGCPFMETSAKSKT-MVDELFAEIVRQ 163
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 53.1 bits (126), Expect = 6e-10
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71
+ DG +IVYS+ DK SF++ Q + R + + P++L+ANK+DL HLR+V
Sbjct: 71 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 130
Query: 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
G+ A KYN + E S D + + F L+
Sbjct: 131 QGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 165
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 52.2 bits (124), Expect = 1e-09
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
A G ++VY + + ++++ S L + R+ N ++L+ NK DLE R V
Sbjct: 73 YYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADLEAQRDVTYEE 131
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ A + F E S + AF +
Sbjct: 132 AKQFAEENGLLFLEASAKTGE-NVEDAFLEAAKK 164
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 52.2 bits (124), Expect = 1e-09
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
+G + V+S+ + ESF + + R + NVP +L+ NK DLE RQV
Sbjct: 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEE 131
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
++ A ++N + E S + + + F L+ E R
Sbjct: 132 AKNRADQWNVNYVETSAKTRA-NVDKVFFDLMREIR 166
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 51.3 bits (122), Expect = 3e-09
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
A G ++VY + +++SFD + ++N+ A +V M+L NK D+ RQV + G
Sbjct: 78 GAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKMILGNKCDVNDKRQVSKERGEK 136
Query: 76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A+ Y F E S N + AF L +
Sbjct: 137 LALDYGIKFMETSAKANI-NVENAFFTLARD 166
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 48.1 bits (113), Expect = 4e-08
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
+ VY + + SF + ++ ++H N++P +L+ NK DL QV L
Sbjct: 73 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA 132
Query: 74 RSTAVKYNCTFHEVSV--ADNSPAIYQAFDHL 103
+ A ++ E S +++ + F L
Sbjct: 133 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 48.3 bits (114), Expect = 4e-08
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
A G ++++ L ++SF + + LQ + N ++L+ NK DL R+V+E R
Sbjct: 88 AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 147
Query: 77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A KY + E S A + +A + LL
Sbjct: 148 ADKYGIPYFETSAATGQ-NVEKAVETLLDL 176
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 48.1 bits (113), Expect = 5e-08
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
+ +G + V+++ + +SF+ + ++R + ++VP++L+ NK D R V+
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LAARTVESRQ 129
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ A Y + E S + AF L+ E
Sbjct: 130 AQDLARSYGIPYIETSAKTRQ-GVEDAFYTLVRE 162
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 45.0 bits (105), Expect = 5e-07
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71
+ W +G ++VY + D+ SF+ + L + NV ++L+ NK DL+H RQV
Sbjct: 68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE 127
Query: 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
G A + C F+E S I + F L E
Sbjct: 128 EGEKLATELACAFYECSACTGEGNITEIFYELCRE 162
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 45.0 bits (105), Expect = 6e-07
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
+ G ++V+++ D++SF+ + R + ++ PV+L+ NK DLE RQV S
Sbjct: 74 YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSE 133
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRK 120
+ ++ + E S + +AF+ L+ + K ++
Sbjct: 134 ASAFGASHHVAYFEASAKLRL-NVDEAFEQLVRA--------VRKYQE 172
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 43.8 bits (102), Expect = 1e-06
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
++G I+VY + D++SF + ++ R N + + ++ NK+DLE R V
Sbjct: 72 YYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQE 130
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
S A + S N I + F L
Sbjct: 131 AESYAESVGAKHYHTSAKQNK-GIEELFLDLCKR 163
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 43.5 bits (101), Expect = 2e-06
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
+ +G ++V+S+ D+ SF+ + + R + + P++L+ NK DL+H RQV +
Sbjct: 73 YMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEE 132
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRK 120
G+ A + T+ E S + QAF L+ I K ++
Sbjct: 133 GQQLARQLKVTYMEASAKIRM-NVDQAFHELVRV--------IRKFQE 171
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 43.0 bits (100), Expect = 3e-06
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
I + ++VY + + SF + +++ R ++V +ML+ NK DL RQV G
Sbjct: 70 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEG 128
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A + N F E S + Q F +
Sbjct: 129 ERKAKELNVMFIETSAKAGY-NVKQLFRRVAAA 160
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 42.7 bits (99), Expect = 4e-06
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDES 71
I I+VYS+ ++S + + + + V ++P+ML+ NK D R+V S
Sbjct: 70 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS 129
Query: 72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
+ A + C F E S N + + F LL +
Sbjct: 130 EAEALARTWKCAFMETSAKLNH-NVKELFQELLNLEK 165
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 42.3 bits (98), Expect = 4e-06
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL---DLEHLRQVD 69
G I V D+E + A L + + + +++ ANK + + ++
Sbjct: 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 123
Query: 70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ LG + N A + +Y+ D L +
Sbjct: 124 DKLGLHSLRHRNWYIQATC-ATSGDGLYEGLDWLSNQ 159
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 41.3 bits (96), Expect = 1e-05
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
A G I+VY + D+ +F + A + ++L+ NK D+E R V G
Sbjct: 72 YRGAMGIILVYDITDERTFT-NIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQG 129
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ A + F E S ++ + + F L
Sbjct: 130 EALAKELGIPFIESSAKNDD-NVNEIFFTLAKL 161
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 40.2 bits (93), Expect = 3e-05
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
A G I+VY + +++F + L L+ + N++ ML+ NK+D + R+VD + G
Sbjct: 77 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEG 135
Query: 74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
A K++ F E S + AF+ L+ +
Sbjct: 136 LKFARKHSMLFIEASAKTCD-GVQCAFEELVEK 167
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 39.2 bits (90), Expect = 7e-05
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 14/106 (13%)
Query: 20 CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES-------- 71
++ + + V + N P++L+ KLDL + E
Sbjct: 79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 138
Query: 72 ----LGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112
G + A + + E S + FD + PP
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAVLCPPP 183
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 38.8 bits (89), Expect = 9e-05
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVN---NVPVMLLANKLDLEHLRQVD 69
+D C++ +S+ D +SF + + + V + P ++L NK+D+ +
Sbjct: 75 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST 134
Query: 70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
E + + E S D + + AF+ +
Sbjct: 135 EEAQAWCRDNGDYPYFETSAKDAT-NVAAAFEEAVRR 170
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 35.9 bits (81), Expect = 9e-04
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
+ D +IVYS+ D+ SF+ A L+R R ++P++L+ NK DL R+V S
Sbjct: 74 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE 133
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
GR+ AV ++C F E S A + + F+ ++ +
Sbjct: 134 GRACAVVFDCKFIETSAAVQH-NVKELFEGIVRQ 166
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 36.2 bits (82), Expect = 9e-04
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--------- 63
+D +I + + E+ D +V + N ++L+ K DL
Sbjct: 70 SYPDSDAVLICFDISRPETLD-SVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL 128
Query: 64 ---HLRQVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHL 103
V G + A + T+ E S + ++ F
Sbjct: 129 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 35.8 bits (81), Expect = 0.001
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 43 QRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDH 102
R N+P++L NK+D++ + +S K N ++++S N + F
Sbjct: 100 DLVRVCENIPIVLCGNKVDIKDRKVKAKS--IVFHRKKNLQYYDISAKSNY-NFEKPFLW 156
Query: 103 LLTE 106
L +
Sbjct: 157 LARK 160
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 35.6 bits (81), Expect = 0.001
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
++ + G IIVY + D+ESF+ V A + V +L+ NK DL+ R V+
Sbjct: 73 SSYYRGSHGIIIVYDVTDQESFN-GVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY 131
Query: 71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
+ + A F E S D++ + AF + +
Sbjct: 132 DVAKEFADANKMPFLETSALDST-NVEDAFLTMARQ 166
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 34.7 bits (78), Expect = 0.002
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
+G I+VYS+ +SF+ L +P+ML+ NK DL R +
Sbjct: 72 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEE 131
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
G++ A +N F E S +N F ++ E+
Sbjct: 132 GKALAESWNAAFLESSAKENQ-TAVDVFRRIILEAE 166
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 34.3 bits (77), Expect = 0.003
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
+ D +IVYS+ DK SF+ A L+R R ++VP++L+ NK DL R+V
Sbjct: 68 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE 127
Query: 73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
GR+ AV ++C F E S A + + F+ ++ +
Sbjct: 128 GRACAVVFDCKFIETSAALHH-NVQALFEGVVRQ 160
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.5 bits (70), Expect = 0.032
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 14 ICWADGCIIVYSLIDKESFDYAVSTL---QNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
A + V + V+ + N+ +++ NK D+ +
Sbjct: 69 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL 128
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 31.1 bits (69), Expect = 0.039
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 15/107 (14%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
D ++ +S++ SF+ V + P +L+ ++DL E L
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFE-NVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKL 129
Query: 73 ------------GRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106
A + E S + FD +
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQK-GLKNVFDEAILA 175
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 29.2 bits (64), Expect = 0.18
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL---------- 62
D +I +S+++ SF + NVP +L+ ++DL
Sbjct: 77 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARL 135
Query: 63 --EHLRQVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106
+ + G+ A + C + E S + FD +
Sbjct: 136 NDMKEKPICVEQGQKLAKEIGACCYVECSALTQK-GLKTVFDEAIIA 181
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 29.2 bits (64), Expect = 0.20
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNN----VPVMLLANKLDLEHLRQV 68
WAD I V+SL D+ SF L R + ++ +++ R V
Sbjct: 67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126
Query: 69 DESLGRSTAV-KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
++ R+ C+++E + + F + +
Sbjct: 127 GDARARALCADMKRCSYYETCATYGL-NVDRVFQEVAQK 164
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 27.0 bits (60), Expect = 0.41
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 26 LIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHL 65
L+D + A +++L + + + LLA++ + L
Sbjct: 3 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQL 43
>d2h62c1 g.7.1.3 (C:34-117) BMP receptor Ia ectodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 24.2 bits (52), Expect = 4.7
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 136 KSPPTHQGGTVVVCNKSDLC 155
K P Q + C +++LC
Sbjct: 55 KDSPKAQLRRTIECCRTNLC 74
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
{Thermus thermophilus [TaxId: 274]}
Length = 268
Score = 24.6 bits (52), Expect = 6.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 23 VYSLIDKESFDYAV 36
VY+ + K S DY V
Sbjct: 224 VYAGLPKISIDYGV 237
>d1ogyb_ a.138.1.3 (B:) Periplasmic nitrate reductase subunit NapB
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 127
Score = 24.1 bits (52), Expect = 8.1
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110
+Y CT V + P + F +LT
Sbjct: 94 RYFCTACHVPQTNAQPLVTNEFRDMLTLMPAS 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0426 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,252
Number of extensions: 24668
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 38
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)