Query psy2797
Match_columns 225
No_of_seqs 137 out of 1690
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:10:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1054|consensus 100.0 3.1E-43 6.6E-48 305.2 5.5 201 1-214 498-699 (897)
2 KOG1053|consensus 100.0 9.9E-31 2.2E-35 235.6 12.6 204 1-221 516-736 (1258)
3 KOG1052|consensus 100.0 2.1E-29 4.5E-34 233.5 10.5 175 4-200 297-471 (656)
4 KOG4440|consensus 99.9 9.5E-28 2.1E-32 210.1 10.9 183 1-201 522-708 (993)
5 PF00060 Lig_chan: Ligand-gate 99.8 3.2E-21 6.9E-26 146.5 -1.0 115 49-181 1-115 (148)
6 PF07885 Ion_trans_2: Ion chan 97.1 0.0018 3.9E-08 43.5 5.5 56 108-163 22-78 (79)
7 KOG1419|consensus 96.1 0.014 3E-07 52.6 6.0 90 51-165 235-325 (654)
8 smart00079 PBPe Eukaryotic hom 94.7 0.033 7.2E-07 40.8 3.1 53 170-222 1-68 (134)
9 KOG3713|consensus 94.5 0.088 1.9E-06 46.9 5.8 52 108-159 375-427 (477)
10 PRK11917 bifunctional adhesin/ 93.9 0.043 9.2E-07 45.4 2.6 35 1-35 104-138 (259)
11 PRK10797 glutamate and asparta 93.3 0.062 1.3E-06 45.5 2.5 34 1-34 109-142 (302)
12 PLN03192 Voltage-dependent pot 92.7 0.23 5E-06 48.0 5.8 53 112-164 252-305 (823)
13 PRK09495 glnH glutamine ABC tr 89.6 0.36 7.7E-06 39.2 3.3 33 2-34 87-119 (247)
14 PRK15010 ABC transporter lysin 89.5 0.36 7.8E-06 39.6 3.2 34 2-35 89-122 (260)
15 PF00497 SBP_bac_3: Bacterial 88.8 0.22 4.9E-06 39.0 1.4 33 2-34 62-94 (225)
16 PRK10537 voltage-gated potassi 88.6 1.5 3.2E-05 38.8 6.5 53 108-160 166-219 (393)
17 PRK15437 histidine ABC transpo 88.6 0.41 8.8E-06 39.3 2.9 33 2-34 89-121 (259)
18 COG0834 HisJ ABC-type amino ac 87.7 0.47 1E-05 38.7 2.8 35 2-36 101-135 (275)
19 TIGR02995 ectoine_ehuB ectoine 86.6 0.58 1.3E-05 38.8 2.7 33 3-35 97-129 (275)
20 TIGR02995 ectoine_ehuB ectoine 85.3 0.94 2E-05 37.5 3.3 65 159-223 121-191 (275)
21 TIGR02285 conserved hypothetic 85.1 0.57 1.2E-05 38.7 1.9 33 2-34 80-113 (268)
22 PRK10859 membrane-bound lytic 84.1 0.93 2E-05 41.1 3.0 33 2-34 105-137 (482)
23 KOG0498|consensus 81.3 1.5 3.2E-05 41.7 3.2 99 112-210 296-414 (727)
24 KOG1418|consensus 80.2 1.2 2.5E-05 39.0 2.1 58 107-164 112-170 (433)
25 KOG1545|consensus 78.4 1.3 2.7E-05 38.4 1.6 45 109-153 392-437 (507)
26 PRK15007 putative ABC transpor 75.3 2.6 5.6E-05 33.8 2.7 32 2-33 84-115 (243)
27 PRK11260 cystine transporter s 75.2 2.6 5.6E-05 34.6 2.6 33 2-34 104-136 (266)
28 TIGR01096 3A0103s03R lysine-ar 74.0 3.5 7.5E-05 33.2 3.1 34 2-35 87-120 (250)
29 TIGR03870 ABC_MoxJ methanol ox 69.0 4.1 9E-05 33.1 2.5 28 5-35 64-91 (246)
30 PRK09495 glnH glutamine ABC tr 66.4 6.9 0.00015 31.6 3.3 54 166-222 118-176 (247)
31 PRK11260 cystine transporter s 66.2 7.8 0.00017 31.7 3.6 53 168-223 138-195 (266)
32 KOG3684|consensus 63.8 6.9 0.00015 35.0 2.9 57 110-166 287-344 (489)
33 PF00497 SBP_bac_3: Bacterial 63.1 2.8 6.1E-05 32.6 0.4 51 169-222 100-156 (225)
34 PRK15007 putative ABC transpor 61.6 7.5 0.00016 31.1 2.7 51 170-223 117-172 (243)
35 KOG4390|consensus 61.3 6.1 0.00013 34.7 2.1 94 107-203 353-451 (632)
36 PRK10797 glutamate and asparta 56.8 8.2 0.00018 32.6 2.2 67 151-222 127-202 (302)
37 PRK10859 membrane-bound lytic 56.7 10 0.00023 34.3 3.0 57 164-223 134-200 (482)
38 PRK09959 hybrid sensory histid 56.3 8.6 0.00019 38.8 2.6 32 3-34 366-397 (1197)
39 PRK11917 bifunctional adhesin/ 55.5 11 0.00024 30.9 2.7 51 169-222 138-197 (259)
40 PF01007 IRK: Inward rectifier 54.4 43 0.00093 29.0 6.2 60 108-167 82-144 (336)
41 PF12273 RCR: Chitin synthesis 53.8 13 0.00028 27.3 2.6 23 50-72 2-24 (130)
42 PF09084 NMT1: NMT1/THI5 like; 53.1 13 0.00029 29.1 2.7 41 153-198 69-109 (216)
43 smart00062 PBPb Bacterial peri 51.2 15 0.00033 27.6 2.8 53 168-223 95-152 (219)
44 PF10661 EssA: WXG100 protein 51.1 23 0.0005 26.7 3.6 27 46-72 115-141 (145)
45 PF14034 Spore_YtrH: Sporulati 50.0 6.3 0.00014 27.8 0.3 40 138-180 3-42 (102)
46 COG4905 Predicted membrane pro 49.3 31 0.00068 27.2 4.1 27 44-70 56-82 (243)
47 TIGR03871 ABC_peri_MoxJ_2 quin 47.4 23 0.00051 28.0 3.4 70 151-223 74-159 (232)
48 TIGR01096 3A0103s03R lysine-ar 46.8 20 0.00044 28.6 2.9 53 168-223 120-178 (250)
49 TIGR03871 ABC_peri_MoxJ_2 quin 45.2 14 0.0003 29.3 1.7 26 9-34 64-89 (232)
50 PRK09959 hybrid sensory histid 42.7 15 0.00033 37.0 1.9 33 2-34 121-153 (1197)
51 PRK11677 hypothetical protein; 40.0 37 0.0008 25.3 3.1 24 52-75 2-25 (134)
52 PHA02844 putative transmembran 38.6 54 0.0012 21.6 3.3 26 45-70 43-68 (75)
53 PF00520 Ion_trans: Ion transp 38.5 96 0.0021 23.2 5.5 49 109-157 144-199 (200)
54 PF06305 DUF1049: Protein of u 38.4 43 0.00093 21.1 3.0 29 45-73 13-41 (68)
55 PF11446 DUF2897: Protein of u 37.8 52 0.0011 20.4 3.1 25 49-73 2-26 (55)
56 KOG1420|consensus 37.2 19 0.00042 33.4 1.5 55 107-161 285-340 (1103)
57 PF05827 ATP-synt_S1: Vacuolar 36.4 38 0.00081 28.3 3.1 28 45-72 252-279 (282)
58 cd00134 PBPb Bacterial peripla 36.2 38 0.00082 25.4 2.9 33 3-35 63-95 (218)
59 PRK15010 ABC transporter lysin 35.8 36 0.00077 27.7 2.8 26 171-199 125-150 (260)
60 PHA03054 IMV membrane protein; 35.6 65 0.0014 21.0 3.3 24 46-69 44-67 (72)
61 PHA02819 hypothetical protein; 35.4 65 0.0014 21.0 3.3 24 46-69 42-65 (71)
62 PHA02650 hypothetical protein; 35.3 64 0.0014 21.6 3.3 27 46-72 45-71 (81)
63 COG3105 Uncharacterized protei 35.0 61 0.0013 23.9 3.5 28 49-76 4-31 (138)
64 PF11044 TMEMspv1-c74-12: Plec 34.7 73 0.0016 18.8 3.1 16 51-66 2-17 (49)
65 cd01324 cbb3_Oxidase_CcoQ Cyto 34.1 77 0.0017 19.0 3.3 22 51-72 12-33 (48)
66 COG4588 AcfC Accessory coloniz 32.6 61 0.0013 26.1 3.4 32 160-192 104-135 (252)
67 TIGR03870 ABC_MoxJ methanol ox 30.9 71 0.0015 25.7 3.8 47 151-200 75-124 (246)
68 PRK15437 histidine ABC transpo 30.6 53 0.0011 26.6 3.0 26 171-199 125-150 (259)
69 smart00062 PBPb Bacterial peri 30.6 50 0.0011 24.7 2.7 34 2-35 63-96 (219)
70 PF10853 DUF2650: Protein of u 29.1 40 0.00086 19.2 1.4 15 48-62 22-36 (38)
71 PF12273 RCR: Chitin synthesis 28.5 38 0.00083 24.7 1.6 21 53-73 2-22 (130)
72 KOG3827|consensus 27.2 1.7E+02 0.0037 25.8 5.5 62 107-168 109-173 (400)
73 COG0834 HisJ ABC-type amino ac 26.5 82 0.0018 25.3 3.5 61 160-223 127-194 (275)
74 TIGR00787 dctP tripartite ATP- 26.4 68 0.0015 26.2 2.9 47 169-218 126-173 (257)
75 PHA02975 hypothetical protein; 26.4 1.2E+02 0.0026 19.7 3.3 23 46-68 40-62 (69)
76 PRK00489 hisG ATP phosphoribos 26.3 34 0.00073 28.7 1.1 34 1-34 67-102 (287)
77 PF04995 CcmD: Heme exporter p 25.5 1.4E+02 0.003 17.5 3.4 22 49-70 4-25 (46)
78 TIGR03427 ABC_peri_uca ABC tra 23.5 44 0.00095 28.7 1.3 26 171-199 98-123 (328)
79 TIGR01729 taurine_ABC_bnd taur 23.3 92 0.002 25.8 3.2 26 168-196 89-114 (300)
80 PF15050 SCIMP: SCIMP protein 23.0 1.1E+02 0.0023 22.3 2.9 17 51-67 7-23 (133)
81 PF05545 FixQ: Cbb3-type cytoc 22.7 1.4E+02 0.0031 17.6 3.2 21 51-71 11-31 (49)
82 PF11374 DUF3176: Protein of u 22.1 2.2E+02 0.0047 20.3 4.5 48 29-79 4-51 (111)
83 PF11628 TCR_zetazeta: T-cell 21.4 1.5E+02 0.0033 16.3 2.6 20 136-155 5-24 (33)
84 TIGR03141 cytochro_ccmD heme e 20.4 2E+02 0.0042 16.8 3.6 23 47-69 3-25 (45)
85 PHA02692 hypothetical protein; 20.3 1.9E+02 0.0041 18.9 3.4 21 46-66 41-62 (70)
No 1
>KOG1054|consensus
Probab=100.00 E-value=3.1e-43 Score=305.23 Aligned_cols=201 Identities=64% Similarity=1.043 Sum_probs=188.3
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhh
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSYIMVSVVLFLVSRFSPHEWRL 80 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~~~~~~~~~~~~PF~~~vWl~i~~~~~~~~~~l~~~~~~~~~~~~~ 80 (225)
+|++++|||.+|++++|||.|++..|+.+|+++|.++.+..++|+.|....+|+|++++.+.+++++++++|++|+||+.
T Consensus 498 iavApLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~ 577 (897)
T KOG1054|consen 498 IAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHT 577 (897)
T ss_pred eEEeeeeeehhhhhhhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC-CCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCCCcccCCchhhHHHHHHHHHHHHHHhhhcccce
Q psy2797 81 LNY-SDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGSDISPRSISGRIVGAVWWFFTLILISSYTANLA 159 (225)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~ 159 (225)
+.. +++-.| ......+++.+++|+.+++++|||.++.|++.+|||+.++||||.++++++|||||+
T Consensus 578 Ee~~rg~~t~-------------~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLA 644 (897)
T KOG1054|consen 578 EEFERGRFTP-------------SDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLA 644 (897)
T ss_pred cccccCCCCC-------------CCCCccchhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHHH
Confidence 744 222111 123466899999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcChHHHHHHHHHhhc
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAVNLVADVVRALGE 214 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 214 (225)
++||+++..+||.|.+||+++.++.+|+.+++++.+||+.+..+.|+++|..|+.
T Consensus 645 AFLTvErMvsPIESaEDLAkQteIaYGt~~~GSTkeFFr~Skiavy~kMW~yM~S 699 (897)
T KOG1054|consen 645 AFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMKS 699 (897)
T ss_pred HHHhHHhhcCcchhHHHHhhcceeeeeecCCCchHHHHhhhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999987
No 2
>KOG1053|consensus
Probab=99.97 E-value=9.9e-31 Score=235.58 Aligned_cols=204 Identities=30% Similarity=0.530 Sum_probs=174.4
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCCCCCCCccccccccchhHHHHHHHHHHHHHH-HHHHHhhcCchhhh
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSYIMVSV-VLFLVSRFSPHEWR 79 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~~~~~~~~~~~~PF~~~vWl~i~~~~~~~~~-~l~~~~~~~~~~~~ 79 (225)
||+|.++|+.||.+++|||.|+.++|+.+||.+.+. ....-+|+.||++.+|+++++.++.++. .++++++++|.++.
T Consensus 516 MAVgSltINeeRSevVDFSvPFveTgIsVmV~rsng-tvspsAFLePfs~svWVmmFVm~livaai~vFlFEy~SPvgyn 594 (1258)
T KOG1053|consen 516 MAVGSLTINEERSEVVDFSVPFVETGISVMVARSNG-TVSPSAFLEPFSPSVWVMMFVMCLIVAAITVFLFEYFSPVGYN 594 (1258)
T ss_pred eeeeeeEechhhhccccccccccccceEEEEEecCC-ccCchhhcCCcchHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 899999999999999999999999999999999887 4566689999999999999998875554 46799999998776
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCCC-cccCCchhhHHHHHHHHHHHHHHhhhcccc
Q psy2797 80 LLNYSDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGSD-ISPRSISGRIVGAVWWFFTLILISSYTANL 158 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~~-~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L 158 (225)
.+... ++++++..++++.++|..|+.+++.+.+ .+|+++.+|++..+|.+|++++.++|||||
T Consensus 595 ~~l~~----------------gkkpggp~FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANL 658 (1258)
T KOG1053|consen 595 RNLAN----------------GKKPGGPSFTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANL 658 (1258)
T ss_pred ccccC----------------CCCCCCcceehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43111 1134678899999999999999999985 599999999999999999999999999999
Q ss_pred eeeeeeccccCCCCChHHhhc------CCCeEEEEEcCChHHHHHHhcChHHHHHHHH--------HhhccCCC-ccc
Q psy2797 159 AAFLTVERMVNPINSVEDLAD------QSDVLYGTVKDASTYHFFEVSAVNLVADVVR--------ALGEQKNG-LNP 221 (225)
Q Consensus 159 ~s~Lt~~~~~~~I~sl~dL~~------~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~--------~~~~~~~~-~~~ 221 (225)
+++|.++++..++..+.|-.- .+.+|+|+++++++|++++++..+++..+.+ .++.+|+| ++|
T Consensus 659 AAfMIqE~~~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~~v~dal~sLK~gKLDA 736 (1258)
T KOG1053|consen 659 AAFMIQEEYYDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQPGVEDALESLKNGKLDA 736 (1258)
T ss_pred HHHHhhhhhhhhccccCcccccCccccCCCcccccCCCCchhhhHHhccHHHHHHHHHhccCchHHHHHHHhcccchh
Confidence 999999999999999999752 2479999999999999999998887766654 45666666 544
No 3
>KOG1052|consensus
Probab=99.96 E-value=2.1e-29 Score=233.54 Aligned_cols=175 Identities=45% Similarity=0.849 Sum_probs=157.9
Q ss_pred cCCCCChhhhhcccccccccccCeeEEEEcCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhhccC
Q psy2797 4 APLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSYIMVSVVLFLVSRFSPHEWRLLNY 83 (225)
Q Consensus 4 ~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~~~~~~~~~~~~PF~~~vWl~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 83 (225)
++++++.+|++++|||.||.+.++++++++|+.... .+.|++||++++|++++++++++++++|++.++.|.+| ..
T Consensus 297 ~~~tit~~R~~~vdfT~p~~~~~~~i~~~~~~~~~~-~~~fl~Pf~~~vW~~i~~~~l~~~~~~~~~~~~~~~~~-~~-- 372 (656)
T KOG1052|consen 297 ADITITPERSKYVDFTIPYLQFGIVIIVRKPDSRSK-LWNFLAPFSPEVWLLILASLLLVGLLLWILERLSPYEL-PP-- 372 (656)
T ss_pred cceEEeecccccEEeccceEeccEEEEEEecCCccc-ceEEecCCcHHHHHHHHHHHHHHHHHHHHHhccccccC-Cc--
Confidence 499999999999999999999999999999987544 88999999999999999999999999999999887766 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCCCcccCCchhhHHHHHHHHHHHHHHhhhcccceeeee
Q psy2797 84 SDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGSDISPRSISGRIVGAVWWFFTLILISSYTANLAAFLT 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt 163 (225)
+ . .........+++|.+++++++|+.+..|++.++|++.++||+++++++++|||+|+|+||
T Consensus 373 ----------~--~------~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 373 ----------R--Q------IVTSLFSLLNCLWLTVGSLLQQGSDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred ----------c--c------cceeEeecccchhhhhHHHhccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0 012334566789999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhc
Q psy2797 164 VERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVS 200 (225)
Q Consensus 164 ~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~ 200 (225)
+++..++|++++||+++.+..+|...+++...+++++
T Consensus 435 ~~~~~~~i~~~~dL~~~~~~~~g~~~~~~~~~~~~~~ 471 (656)
T KOG1052|consen 435 VPRLRSPIDSLDDLADQSNIPYGTQRGSFTRIYLEES 471 (656)
T ss_pred ccccCCcccCHHHHHHhcCCeEEEEecchHHHHHHHH
Confidence 9999999999999997667899999999999999999
No 4
>KOG4440|consensus
Probab=99.95 E-value=9.5e-28 Score=210.08 Aligned_cols=183 Identities=37% Similarity=0.669 Sum_probs=162.0
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhh
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSYIMVSVVLFLVSRFSPHEWRL 80 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~~~~~~~~~~~~PF~~~vWl~i~~~~~~~~~~l~~~~~~~~~~~~~ 80 (225)
|++|++||++||.+++|||.|+...|++++.+++.. .+...+|++||+.++|+++.+++.++++++|++++++|.+-..
T Consensus 522 MivaplTINpERa~yieFskPfkYqGitILeKk~~r-~Stl~SFlQPfqstLW~lv~~SVhvVal~lYlLDrfSPFgRFk 600 (993)
T KOG4440|consen 522 MIVAPLTINPERAQYIEFSKPFKYQGITILEKKEIR-RSTLDSFLQPFQSTLWLLVGLSVHVVALMLYLLDRFSPFGRFK 600 (993)
T ss_pred eEeeceeeChhhhhheeccCcccccceEEEeeCCCC-CchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccee
Confidence 789999999999999999999999999999998875 6788899999999999999999999999999999999976543
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccce
Q psy2797 81 LNYSDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLA 159 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~ 159 (225)
.... . +.+.....+++++|++|+.+++.|. +..|+|.+.|++..+|+=|+++++++|||||+
T Consensus 601 ~~ds----------~-------~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLA 663 (993)
T KOG4440|consen 601 VNDS----------E-------EEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLA 663 (993)
T ss_pred eccC----------c-------cchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhh
Confidence 2100 0 1233456899999999999999987 77999999999999999999999999999999
Q ss_pred eeeeeccccCCCCChHHhhc---CCCeEEEEEcCChHHHHHHhcC
Q psy2797 160 AFLTVERMVNPINSVEDLAD---QSDVLYGTVKDASTYHFFEVSA 201 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~---~~~~~~~~~~~s~~~~~l~~~~ 201 (225)
++|...+.+..+..+.|-.- ++++-++++++|+.+.||+..-
T Consensus 664 AFLVLdrPe~~ltGinDpRLRNps~nf~~aTVk~SsVd~YFrRqV 708 (993)
T KOG4440|consen 664 AFLVLDRPEERLTGINDPRLRNPSDNFIYATVKQSSVDIYFRRQV 708 (993)
T ss_pred hheeecCccccccCCCCccccCcccceeEEEecCccHHHHHHHHh
Confidence 99999999999999999743 3479999999999999998763
No 5
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=99.80 E-value=3.2e-21 Score=146.49 Aligned_cols=115 Identities=54% Similarity=0.949 Sum_probs=84.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCchhhhhccCCCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCCC
Q psy2797 49 SEEIWVAIIFSYIMVSVVLFLVSRFSPHEWRLLNYSDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGSD 128 (225)
Q Consensus 49 ~~~vWl~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~~ 128 (225)
+++||++++++++++++++|+++++.+.+|+.. .+ ........++.+++|+.++++++|+..
T Consensus 1 s~~vW~~il~~~~~~~~~~~~~~~~~~~~~~~~------------~~------~~~~~~~~~~~~~~~~~~~~~~~q~~~ 62 (148)
T PF00060_consen 1 SWSVWLLILLSILLVSLVLWLFERFSPYEWRKN------------QS------SPPRRWRFSLSNSFWYTFGTLLQQGSS 62 (148)
T ss_dssp -HHHHHHHHHHHHHHHTTGGGT------------------------------------HHHHHHHHHHHCCCCCHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc------------cc------cccccCcccHHHHHHHHHHhhcccccc
Confidence 589999999999999999999998876555521 00 001234557889999999999999999
Q ss_pred cccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeeccccCCCCChHHhhcCC
Q psy2797 129 ISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERMVNPINSVEDLADQS 181 (225)
Q Consensus 129 ~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~ 181 (225)
..|++.++|++.++|++++++++++|+|+|+|+||.|+++++|+|++||++++
T Consensus 63 ~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 63 IRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYEPPIDSLEDLANSG 115 (148)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHTSS-SSHHHHHTHS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCCHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999874
No 6
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=97.05 E-value=0.0018 Score=43.51 Aligned_cols=56 Identities=27% Similarity=0.542 Sum_probs=48.0
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeee
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLT 163 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt 163 (225)
..++.+++|+++.++...|. +..|.+..+|++...+.+.++.+.+...+.+++.++
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999997 789999999999999999999999999998887664
No 7
>KOG1419|consensus
Probab=96.10 E-value=0.014 Score=52.56 Aligned_cols=90 Identities=14% Similarity=0.298 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhhccCCCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCC-Cc
Q psy2797 51 EIWVAIIFSYIMVSVVLFLVSRFSPHEWRLLNYSDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGS-DI 129 (225)
Q Consensus 51 ~vWl~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~-~~ 129 (225)
+.|..-++.+++.+.++|+.+.-.+.|- ......+..+++||..-+++..|+ ++
T Consensus 235 Tt~YIGFL~LIfsSflVYLaEKd~~~e~-------------------------~n~~F~TyADALWWG~ITltTIGYGDk 289 (654)
T KOG1419|consen 235 TTWYIGFLVLIFSSFLVYLAEKDAQGEG-------------------------TNDEFPTYADALWWGVITLTTIGYGDK 289 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc-------------------------ccccchhHHHHHHhhheeEEeeccCCc
Confidence 5677777777888888888876432100 112334688999999999999998 89
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeec
Q psy2797 130 SPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVE 165 (225)
Q Consensus 130 ~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~ 165 (225)
.|.+|.||++...+.++++-+-+.=.+.|.|-++..
T Consensus 290 ~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 290 TPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred CcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 999999999999999999999999999999988764
No 8
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=94.66 E-value=0.033 Score=40.78 Aligned_cols=53 Identities=34% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCCChHHhhcCCCeEEEEEcCChHHHHHHhcChHH---------------HHHHHHHhhccCCCcccc
Q psy2797 170 PINSVEDLADQSDVLYGTVKDASTYHFFEVSAVNL---------------VADVVRALGEQKNGLNPL 222 (225)
Q Consensus 170 ~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 222 (225)
+|++++||.++++.++|+..++..+.++++...+. |++..+.+..++.|.+|+
T Consensus 1 ~i~~~~dl~~~~~~~vgv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~da~ 68 (134)
T smart00079 1 PITSVEDLAKQTKIEYGTIRGSSTLAFFKRSGNPEYSRMWNYMSASPSVFVKSYAEGVQRVRVSNYAF 68 (134)
T ss_pred CCCChHHHhhCCCccceEecCchHHHHHHhCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHcCCCEE
Confidence 58999999875557999999999999999876542 344556666666665333
No 9
>KOG3713|consensus
Probab=94.54 E-value=0.088 Score=46.86 Aligned_cols=52 Identities=15% Similarity=0.409 Sum_probs=44.9
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccce
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLA 159 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~ 159 (225)
..++--++||.+-+|+..|+ +..|.+++||++...-.++++++.+.=...|.
T Consensus 375 FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv 427 (477)
T KOG3713|consen 375 FTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIV 427 (477)
T ss_pred CccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHh
Confidence 45788899999999999998 89999999999999999999988876554443
No 10
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=93.94 E-value=0.043 Score=45.37 Aligned_cols=35 Identities=34% Similarity=0.647 Sum_probs=31.1
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++++|++|.+.++||.||+.++..+++++.+
T Consensus 104 ~~~~~~~~t~eR~~~~~fs~py~~~~~~lvv~~~~ 138 (259)
T PRK11917 104 AVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEK 138 (259)
T ss_pred EEEecccCChhhhheeeeccCceeeceEEEEECCC
Confidence 35688999999999999999999999999998643
No 11
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=93.27 E-value=0.062 Score=45.55 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=30.8
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
|+++++++|.+|.+.++||.||+.++..+++++.
T Consensus 109 i~~~~~~~t~eR~~~~~fS~Py~~~~~~lv~r~~ 142 (302)
T PRK10797 109 FECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKG 142 (302)
T ss_pred EEecCCccCcchhhcceecccEeeccEEEEEECC
Confidence 4567899999999999999999999999999864
No 12
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=92.72 E-value=0.23 Score=48.04 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=47.9
Q ss_pred cchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 112 SNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 112 ~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
..++||++.+++..|+ +..|.+..+|++.++++++++.+.++..+++++.+..
T Consensus 252 i~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999987 8899999999999999999999999999999987653
No 13
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=89.63 E-value=0.36 Score=39.23 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=29.3
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.|.+|.+.++||.||+.++..+++++.
T Consensus 87 ~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~ 119 (247)
T PRK09495 87 ALAGITITDERKKAIDFSDGYYKSGLLVMVKAN 119 (247)
T ss_pred EEecCccCHHHHhhccccchheecceEEEEECC
Confidence 456789999999999999999999999998754
No 14
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=89.46 E-value=0.36 Score=39.62 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.0
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.|++.++.++++++..
T Consensus 89 ~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~ 122 (260)
T PRK15010 89 IISSLSITDKRQQEIAFSDKLYAADSRLIAAKGS 122 (260)
T ss_pred EEecCcCCHHHHhhcccccceEeccEEEEEECCC
Confidence 4577899999999999999999999999988653
No 15
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=88.76 E-value=0.22 Score=39.00 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=29.1
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.|.+|.+.++||.|++..+.++++++.
T Consensus 62 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~ 94 (225)
T PF00497_consen 62 IIGGLSITPERAKKFDFSDPYYSSPYVLVVRKG 94 (225)
T ss_dssp EESSEB-BHHHHTTEEEESESEEEEEEEEEETT
T ss_pred ccccccccccccccccccccccchhheeeeccc
Confidence 457889999999999999999999999999963
No 16
>PRK10537 voltage-gated potassium channel; Provisional
Probab=88.61 E-value=1.5 Score=38.81 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=43.8
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhccccee
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAA 160 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s 160 (225)
..++.+++|+++.++...|+ +..|.+..+|++..++.++++.+..+..+.++.
T Consensus 166 ~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 166 IESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988887 788999999999999999998776655555444
No 17
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=88.59 E-value=0.41 Score=39.29 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=29.8
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.|.+|.+.++||.|++.++..+++++.
T Consensus 89 ~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~ 121 (259)
T PRK15437 89 IMSSLSITEKRQQEIAFTDKLYAADSRLVVAKN 121 (259)
T ss_pred EEecCCCCHHHhhhccccchhhcCceEEEEECC
Confidence 457899999999999999999999999999864
No 18
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=87.70 E-value=0.47 Score=38.74 Aligned_cols=35 Identities=43% Similarity=0.693 Sum_probs=30.8
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPSK 36 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~~ 36 (225)
.++.+++|.+|.+.++||.||+.++..++++..+.
T Consensus 101 ~~~~~~~t~er~~~~~fs~py~~~~~~~~~~~~~~ 135 (275)
T COG0834 101 IIAGMTITPERKKKVDFSDPYYYSGQVLLVKKDSD 135 (275)
T ss_pred EEeccccCHHHhccccccccccccCeEEEEECCCC
Confidence 46778999999999999999999999999986543
No 19
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=86.56 E-value=0.58 Score=38.79 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=29.2
Q ss_pred ecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 3 IAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 3 i~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++|.+|.+.++||.||+.++..+++++.+
T Consensus 97 ~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~ 129 (275)
T TIGR02995 97 AAGLFIKPERCKQVAFTQPILCDAEALLVKKGN 129 (275)
T ss_pred eecccCCHHHHhccccccceeecceeEEEECCC
Confidence 467889999999999999999999999988643
No 20
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=85.25 E-value=0.94 Score=37.54 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=45.9
Q ss_pred eeeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh-----HHHHHHHHHhhccCCC-ccccc
Q psy2797 159 AAFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV-----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 159 ~s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~-----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++++.......+++++||.+.++.++|+..++..++++++... ..++...+.++.+.+| +++++
T Consensus 121 ~~~~~~~~~~~~i~~~~dl~~~~g~~Igv~~g~~~~~~l~~~~~~~~~i~~~~~~~~~i~~L~~grvDa~i 191 (275)
T TIGR02995 121 EALLVKKGNPKGLKSYKDIAKNPDAKIAAPGGGTEEKLAREAGVKREQIIVVPDGQSGLKMVQDGRADAYS 191 (275)
T ss_pred eeEEEECCCCCCCCCHHHhccCCCceEEEeCCcHHHHHHHHcCCChhhEEEeCCHHHHHHHHHcCCCCEEe
Confidence 34666655445689999997656679999999999999987532 1345556677777777 44443
No 21
>TIGR02285 conserved hypothetical protein. Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown.
Probab=85.06 E-value=0.57 Score=38.66 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=27.0
Q ss_pred eecCCCCChhhhhcccccccccc-cCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMT-LGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~-~~~~~lv~~~ 34 (225)
++.++++|+||++.++||.|++. ....+++++.
T Consensus 80 ~~~~~~~t~eR~~~~~Fs~P~~~~~~~~~~~~~~ 113 (268)
T TIGR02285 80 CTVNLLRTPEREKFLIFSDPTLRALPVGLVLRKE 113 (268)
T ss_pred EEeeccCCcchhhceeecCCccccCCceEEEccc
Confidence 34578999999999999999975 5678888753
No 22
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=84.08 E-value=0.93 Score=41.08 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=29.7
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
+++++++|.+|.+.++||.||+..+..+++++.
T Consensus 105 ~~~~lt~T~eR~~~~~FS~Py~~~~~~lv~r~~ 137 (482)
T PRK10859 105 AAAGLTYTPERLKQFRFGPPYYSVSQQLVYRKG 137 (482)
T ss_pred EeccCcCChhhhccCcccCCceeeeEEEEEeCC
Confidence 567899999999999999999999999988754
No 23
>KOG0498|consensus
Probab=81.25 E-value=1.5 Score=41.68 Aligned_cols=99 Identities=15% Similarity=0.299 Sum_probs=70.6
Q ss_pred cchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee-----ccccCCCCChHHhhcC-----
Q psy2797 112 SNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV-----ERMVNPINSVEDLADQ----- 180 (225)
Q Consensus 112 ~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~-----~~~~~~I~sl~dL~~~----- 180 (225)
..++|+.+.++..-|. ...+.+.+..++.++.+++++++.+..-||++++++. .++...++.+++-.++
T Consensus 296 ~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~ 375 (727)
T KOG0498|consen 296 VYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPP 375 (727)
T ss_pred HHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCH
Confidence 4689999999987777 5788999999999999999999999999999998874 2334444444444332
Q ss_pred ---------CCeEEEEEcCChHHHHHHhcChHHHHHHHH
Q psy2797 181 ---------SDVLYGTVKDASTYHFFEVSAVNLVADVVR 210 (225)
Q Consensus 181 ---------~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~ 210 (225)
-.++|-.-+|--.+..+++.-+++-+++-+
T Consensus 376 ~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~ 414 (727)
T KOG0498|consen 376 DLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKR 414 (727)
T ss_pred HHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHH
Confidence 234566555555566666665554444443
No 24
>KOG1418|consensus
Probab=80.20 E-value=1.2 Score=38.96 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=49.8
Q ss_pred CcccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 107 NDFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
...++.++++|++.+++..|+ ...|.+..||++.++|.++++=+.-..-+++.-+|+.
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445889999999999999998 7799999999999999999988887777777766653
No 25
>KOG1545|consensus
Probab=78.39 E-value=1.3 Score=38.43 Aligned_cols=45 Identities=24% Similarity=0.574 Sum_probs=38.0
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhh
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISS 153 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~ 153 (225)
.++-+++||+..+|+..|+ +..|.+..|+++-..-.+++++-++.
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiAL 437 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIAL 437 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecc
Confidence 4688999999999999998 88999999999988877777655443
No 26
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=75.32 E-value=2.6 Score=33.84 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.9
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEc
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKK 33 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~ 33 (225)
++++++.+.+|.+.++||.||+..+..++.+.
T Consensus 84 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~v~~~ 115 (243)
T PRK15007 84 VMAGMDITPEREKQVLFTTPYYDNSALFVGQQ 115 (243)
T ss_pred EEEcCccCHHHhcccceecCccccceEEEEeC
Confidence 34678889999999999999999887777654
No 27
>PRK11260 cystine transporter subunit; Provisional
Probab=75.16 E-value=2.6 Score=34.64 Aligned_cols=33 Identities=36% Similarity=0.677 Sum_probs=29.0
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.+.+|.+.++||.|++..+..+++++.
T Consensus 104 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~ 136 (266)
T PRK11260 104 VINQVTISDERKKKYDFSTPYTVSGIQALVKKG 136 (266)
T ss_pred EEeccccCHHHHhccccCCceeecceEEEEEcC
Confidence 346788999999999999999999999998864
No 28
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=74.03 E-value=3.5 Score=33.17 Aligned_cols=34 Identities=38% Similarity=0.706 Sum_probs=29.4
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++||.|++.++..++++...
T Consensus 87 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 120 (250)
T TIGR01096 87 IMATMSITPKRQKQIDFSDPYYATGQGFVVKKGS 120 (250)
T ss_pred EEecCccCHHHhhccccccchhcCCeEEEEECCC
Confidence 4457788999999999999999999999998654
No 29
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=68.97 E-value=4.1 Score=33.09 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 5 PLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 5 ~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++|.+| ++||.||+.++.++++++.+
T Consensus 64 ~~~~t~~r---~~fS~PY~~~~~~~v~~k~~ 91 (246)
T TIGR03870 64 GLDTGDPR---VLTTKPYYRSSYVFLTRKDR 91 (246)
T ss_pred eCCCChHH---HhcccCcEEeeeEEEEeCCC
Confidence 57888887 68999999999999998653
No 30
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=66.37 E-value=6.9 Score=31.58 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=35.8
Q ss_pred cccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcChH----HHHHHHHHhhccCCC-cccc
Q psy2797 166 RMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAVN----LVADVVRALGEQKNG-LNPL 222 (225)
Q Consensus 166 ~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~ 222 (225)
+-..++++++||.++ ++|+..+++...++++...+ .+.+..+.++.+..| ++++
T Consensus 118 ~~~~~~~~~~dL~g~---~I~v~~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~L~~grvDa~ 176 (247)
T PRK09495 118 ANNNDIKSVKDLDGK---VVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYLELGTGRADAV 176 (247)
T ss_pred CCCCCCCChHHhCCC---EEEEecCchHHHHHHhcCCCCceEEcCCHHHHHHHHHcCceeEE
Confidence 334569999999765 89999999888888765321 234444555555555 4443
No 31
>PRK11260 cystine transporter subunit; Provisional
Probab=66.16 E-value=7.8 Score=31.73 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=37.3
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
...+++++||.++ ++|+..++....++++... ..++...+.++.+.+| ++++|
T Consensus 138 ~~~~~~~~dL~g~---~Igv~~G~~~~~~l~~~~~~~~i~~~~~~~~~l~~L~~GrvD~~i 195 (266)
T PRK11260 138 EGTIKTAADLKGK---KVGVGLGTNYEQWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAIL 195 (266)
T ss_pred cCCCCCHHHcCCC---EEEEecCCcHHHHHHHhCCCCceEecCCHHHHHHHHHcCCCCEEE
Confidence 3468999999554 9999999998888877543 2355556666666666 44443
No 32
>KOG3684|consensus
Probab=63.76 E-value=6.9 Score=34.98 Aligned_cols=57 Identities=26% Similarity=0.292 Sum_probs=44.0
Q ss_pred cccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecc
Q psy2797 110 SLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVER 166 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~ 166 (225)
.+.+++|...-+++..|+ +..|...-||.+.++=...+-.+++.-.|-++=-|...+
T Consensus 287 ~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeLt~ 344 (489)
T KOG3684|consen 287 NYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLELTK 344 (489)
T ss_pred HHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 578999999999999998 899999999999888776666666666555554444333
No 33
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=63.06 E-value=2.8 Score=32.59 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=34.9
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh-----HHHHHHHHHhhccCCC-cccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV-----NLVADVVRALGEQKNG-LNPL 222 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~-----~~~~~~~~~~~~~~~~-~~~~ 222 (225)
..+++++||.++ ++|+.+++....++.+... ..+.+..+.++.+.+| +++.
T Consensus 100 ~~~~~~~dl~~~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 156 (225)
T PF00497_consen 100 KTIKSLDDLKGK---RIGVVRGSSYADYLKQQYPSNINIVEVDSPEEALEALLSGRIDAF 156 (225)
T ss_dssp SSHSSGGGGTTS---EEEEETTSHHHHHHHHHTHHTSEEEEESSHHHHHHHHHTTSSSEE
T ss_pred ccccchhhhcCc---ccccccchhHHHHhhhhccchhhhcccccHHHHHHHHhcCCeeee
Confidence 567777799554 9999999999888887432 2345666666666666 4443
No 34
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=61.61 E-value=7.5 Score=31.13 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=35.8
Q ss_pred CCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 170 PINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 170 ~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+++++||.+ .++|+..++....++.+... ..+....+.++.+..| +++++
T Consensus 117 ~~~~~~dL~g---~~Igv~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~grvDa~i 172 (243)
T PRK15007 117 KYTSVDQLKG---KKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAKLDLQNGRIDAVF 172 (243)
T ss_pred CCCCHHHhCC---CeEEEecCcHHHHHHHHhCCCCeEEEcCCHHHHHHHHHcCCCCEEE
Confidence 4789999955 49999999999888876543 2355666666655555 45543
No 35
>KOG4390|consensus
Probab=61.34 E-value=6.1 Score=34.70 Aligned_cols=94 Identities=18% Similarity=0.300 Sum_probs=57.5
Q ss_pred CcccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeeccccCCCCChHHhhc-CCC--
Q psy2797 107 NDFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERMVNPINSVEDLAD-QSD-- 182 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~-~~~-- 182 (225)
...++-.+|||.+.++..-|+ +..|+...|+|+..+--|.++++++.-.--++|-...=..+. .-.|-.+ +.+
T Consensus 353 ~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQN---QRADKRrAQkKaR 429 (632)
T KOG4390|consen 353 KFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQN---QRADKRRAQKKAR 429 (632)
T ss_pred ccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhh---hhhhHHHHHHHhh
Confidence 345688899999999998887 889999999999888777666555444333333222111111 1111110 011
Q ss_pred -eEEEEEcCChHHHHHHhcChH
Q psy2797 183 -VLYGTVKDASTYHFFEVSAVN 203 (225)
Q Consensus 183 -~~~~~~~~s~~~~~l~~~~~~ 203 (225)
-|+-+.+.++...|++....+
T Consensus 430 LARIR~aKsgs~nA~~~~Krng 451 (632)
T KOG4390|consen 430 LARIRLAKSGSTNAYLQSKRNG 451 (632)
T ss_pred hhheeehhcccchHHHhhhhcc
Confidence 244566788888888776553
No 36
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=56.80 E-value=8.2 Score=32.58 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=42.4
Q ss_pred HhhhcccceeeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcC--------hHHHHHHHHHhhccCCC-ccc
Q psy2797 151 ISSYTANLAAFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSA--------VNLVADVVRALGEQKNG-LNP 221 (225)
Q Consensus 151 ~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~--------~~~~~~~~~~~~~~~~~-~~~ 221 (225)
+.-|...-.++++.+. ..|++++||.++ ++|+..++..+.++++.. ...+.+..+.++.+.+| ++|
T Consensus 127 S~Py~~~~~~lv~r~~--~~i~sl~dL~Gk---~V~v~~gs~~~~~l~~~~~~~~~~~~i~~~~~~~~~l~~L~~GrvDa 201 (302)
T PRK10797 127 SDTIFVVGTRLLTKKG--GDIKDFADLKGK---AVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVA 201 (302)
T ss_pred cccEeeccEEEEEECC--CCCCChHHcCCC---EEEEeCCCcHHHHHHHHhhhcCCceEEEEeCCHHHHHHHHHcCCceE
Confidence 3334333455555443 468999999665 999999999988886432 12344555666666666 444
Q ss_pred c
Q psy2797 222 L 222 (225)
Q Consensus 222 ~ 222 (225)
+
T Consensus 202 ~ 202 (302)
T PRK10797 202 F 202 (302)
T ss_pred E
Confidence 3
No 37
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=56.73 E-value=10 Score=34.29 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=37.9
Q ss_pred eccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh---------HHHHHHHHHhhccCCC-ccccc
Q psy2797 164 VERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV---------NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 164 ~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~---------~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
..+-.+.+++++||.++ ++++.+++..+..+++... ..+.+..+.++.+.+| ++++|
T Consensus 134 ~r~~~~~i~~l~dL~Gk---~I~V~~gS~~~~~L~~l~~~~p~i~~~~~~~~s~~e~l~aL~~G~iDa~v 200 (482)
T PRK10859 134 YRKGQPRPRSLGDLKGG---TLTVAAGSSHVETLQELKKKYPELSWEESDDKDSEELLEQVAEGKIDYTI 200 (482)
T ss_pred EeCCCCCCCCHHHhCCC---eEEEECCCcHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHCCCCCEEE
Confidence 33334679999999765 9999999999888765321 1123455667766666 55444
No 38
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=56.26 E-value=8.6 Score=38.75 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=27.8
Q ss_pred ecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 3 IAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 3 i~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
+.+++.|++|.+.++||.||+.+..++++++.
T Consensus 366 i~~~~~t~~r~~~~~fs~py~~~~~~~v~~~~ 397 (1197)
T PRK09959 366 IPGAIYSEDRENNVLFAEAFITTPYVFVMQKA 397 (1197)
T ss_pred eecccCCccccccceeccccccCCEEEEEecC
Confidence 45667899999999999999999999988754
No 39
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=55.47 E-value=11 Score=30.91 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=33.2
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh--------HHHHHHHHHhhccCCC-cccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV--------NLVADVVRALGEQKNG-LNPL 222 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~--------~~~~~~~~~~~~~~~~-~~~~ 222 (225)
.++++++||.++ ++|+..++..+..+.+... ..++...+.++.+..| ++++
T Consensus 138 ~~~~s~~dL~g~---~V~v~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~GrvDa~ 197 (259)
T PRK11917 138 KNYKSLADMKGA---NIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAF 197 (259)
T ss_pred CCCCCHHHhCCC---eEEEecCCcHHHHHHHhhHhcCCceeEEecCCHHHHHHHHHcCCCcEE
Confidence 468999999765 9999999988776654321 1233445555555566 4443
No 40
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=54.35 E-value=43 Score=28.99 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=48.5
Q ss_pred cccccchhhhhhhhhhccCCC---cccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeeccc
Q psy2797 108 DFSLSNSFWFSLGAFMQQGSD---ISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERM 167 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~~---~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~ 167 (225)
..++.+++++++.++...|+. ..|....+-+++.+=.+.++++.+.-+|-+.+-++.|+.
T Consensus 82 ~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 82 VNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp -TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 457999999999999988874 357788888888888999999999999999999998874
No 41
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=53.77 E-value=13 Score=27.26 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q psy2797 50 EEIWVAIIFSYIMVSVVLFLVSR 72 (225)
Q Consensus 50 ~~vWl~i~~~~~~~~~~l~~~~~ 72 (225)
|-+|+.+++.++++.++++++.+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555555555444443
No 42
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=53.08 E-value=13 Score=29.09 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=27.1
Q ss_pred hhcccceeeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHH
Q psy2797 153 SYTANLAAFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFE 198 (225)
Q Consensus 153 ~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~ 198 (225)
.+.+.....+..+ .+.|+++.||.++ ++++..++..+.+++
T Consensus 69 ~~~~~~~~l~~~~--~s~i~~~~DLkGK---~i~v~~~s~~~~~~~ 109 (216)
T PF09084_consen 69 SYQSSPNALVVRK--DSGIKSPADLKGK---KIGVSRGSSSEYFLR 109 (216)
T ss_dssp EEEECCEEEEEET--TTS-SSGGGGTTS---EEEESTTSHHHHHHH
T ss_pred ecCCCceEEEEec--cCCCCCHHHhCCC---EEEEecCcchhHHHH
Confidence 3444455555544 4559999999887 999999776655444
No 43
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=51.21 E-value=15 Score=27.58 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=33.6
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
..++++++||.++ ++++..++....++.+... ..+....+.++.+.+| +++++
T Consensus 95 ~~~~~~~~dL~g~---~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~ 152 (219)
T smart00062 95 DSPIKSLEDLKGK---KVAVVAGTTGEELLKKLYPEAKIVSYDSQAEALAALKAGRADAAV 152 (219)
T ss_pred CCCCCChHHhCCC---EEEEecCccHHHHHHHhCCCceEEEcCCHHHHHHHhhcCcccEEE
Confidence 3469999999654 8999999888888876522 1233334444444444 44443
No 44
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=51.14 E-value=23 Score=26.69 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhh
Q psy2797 46 DPLSEEIWVAIIFSYIMVSVVLFLVSR 72 (225)
Q Consensus 46 ~PF~~~vWl~i~~~~~~~~~~l~~~~~ 72 (225)
.|.++.+|++++++++++++.+|.+.|
T Consensus 115 ~~~~~~i~~~i~g~ll~i~~giy~~~r 141 (145)
T PF10661_consen 115 KPISPTILLSIGGILLAICGGIYVVLR 141 (145)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888888877777777655
No 45
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=49.99 E-value=6.3 Score=27.76 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhcccceeeeeeccccCCCCChHHhhcC
Q psy2797 138 IVGAVWWFFTLILISSYTANLAAFLTVERMVNPINSVEDLADQ 180 (225)
Q Consensus 138 il~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~ 180 (225)
++...+.-+++++-.+.-+.+.+.|+. +||.+++.|++++
T Consensus 3 ~i~~ffiA~GVvlGGsliGglga~l~~---~pPl~~m~~lA~~ 42 (102)
T PF14034_consen 3 LILDFFIAFGVVLGGSLIGGLGAFLTG---QPPLKTMLDLAND 42 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC---CChHHHHHHHHHH
Confidence 455667778899999999999999994 7899999999885
No 46
>COG4905 Predicted membrane protein [Function unknown]
Probab=49.33 E-value=31 Score=27.24 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=21.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHH
Q psy2797 44 FLDPLSEEIWVAIIFSYIMVSVVLFLV 70 (225)
Q Consensus 44 ~~~PF~~~vWl~i~~~~~~~~~~l~~~ 70 (225)
...||+.++|.+++.+++++.++=++.
T Consensus 56 ~~lpf~nnl~sL~ifsi~ivTv~Eyvt 82 (243)
T COG4905 56 VGLPFKNNLISLIIFSIFIVTVLEYVT 82 (243)
T ss_pred EEecCCCchHHHHHHHHHHHHHHHHHH
Confidence 345999999999999998888775444
No 47
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=47.43 E-value=23 Score=27.95 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=42.2
Q ss_pred HhhhcccceeeeeeccccCCCCChHH--hhcCCCeEEEEEcCChHHHHHHhcCh--H--HH---------HHHHHHhhcc
Q psy2797 151 ISSYTANLAAFLTVERMVNPINSVED--LADQSDVLYGTVKDASTYHFFEVSAV--N--LV---------ADVVRALGEQ 215 (225)
Q Consensus 151 ~~~Yta~L~s~Lt~~~~~~~I~sl~d--L~~~~~~~~~~~~~s~~~~~l~~~~~--~--~~---------~~~~~~~~~~ 215 (225)
+..|...=..+++.+.....+++++| |.+ .++|+..++..+.++.+... . .+ .+..+.++.+
T Consensus 74 s~py~~~~~~lv~~~~~~~~~~~~~d~~l~g---~~V~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (232)
T TIGR03871 74 TRPYYRSTYVFVTRKDSLLDVKSLDDPRLKK---LRIGVFAGTPPAHWLARHGLVENVVGYSLFGDYRPESPPGRMVEDL 150 (232)
T ss_pred cCCcEeeeEEEEEeCCCcccccchhhhhhcC---CeEEEEcCChHHHHHHhcCcccccccccccccccccCCHHHHHHHH
Confidence 43443333455555443467899998 544 49999999999998876542 1 11 1345566666
Q ss_pred CCC-ccccc
Q psy2797 216 KNG-LNPLI 223 (225)
Q Consensus 216 ~~~-~~~~~ 223 (225)
..| +++.+
T Consensus 151 ~~G~~Da~i 159 (232)
T TIGR03871 151 AAGEIDVAI 159 (232)
T ss_pred HcCCcCEEE
Confidence 666 44443
No 48
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=46.83 E-value=20 Score=28.63 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=36.4
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh-----HHHHHHHHHhhccCCC-ccccc
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV-----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~-----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+.+++++||.++ ++|+..++....++++... ..+....+.++.+.+| ++++|
T Consensus 120 ~~~~~~~~dl~g~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~s~~~~~~~L~~g~vD~~v 178 (250)
T TIGR01096 120 SDLAKTLEDLDGK---TVGVQSGTTHEQYLKDYFKPGVDIVEYDSYDNANMDLKAGRIDAVF 178 (250)
T ss_pred CCcCCChHHcCCC---EEEEecCchHHHHHHHhccCCcEEEEcCCHHHHHHHHHcCCCCEEE
Confidence 3446789999654 9999999998888776532 2355666677777666 44443
No 49
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=45.17 E-value=14 Score=29.33 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.8
Q ss_pred ChhhhhcccccccccccCeeEEEEcC
Q psy2797 9 TSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 9 t~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
+.+|.+.++||.||+..+.+++++..
T Consensus 64 ~~~r~~~~~fs~py~~~~~~lv~~~~ 89 (232)
T TIGR03871 64 VPAGYEMVLTTRPYYRSTYVFVTRKD 89 (232)
T ss_pred ccCccccccccCCcEeeeEEEEEeCC
Confidence 56788999999999999999998864
No 50
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=42.71 E-value=15 Score=36.98 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=28.2
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
.++.++.|.+|.+.++||.||+.+...+++++.
T Consensus 121 ~~~~~~~~~~r~~~~~fs~py~~~~~~~v~~~~ 153 (1197)
T PRK09959 121 VLSHLVASPPLNDDIAATKPLIITFPALVTTLH 153 (1197)
T ss_pred ecCccccccccccchhcCCCccCCCceEEEeCC
Confidence 346678999999999999999988888888764
No 51
>PRK11677 hypothetical protein; Provisional
Probab=40.01 E-value=37 Score=25.27 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Q psy2797 52 IWVAIIFSYIMVSVVLFLVSRFSP 75 (225)
Q Consensus 52 vWl~i~~~~~~~~~~l~~~~~~~~ 75 (225)
.|+..+++++++.++-+++.|+.+
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcc
Confidence 388889988888888888888754
No 52
>PHA02844 putative transmembrane protein; Provisional
Probab=38.64 E-value=54 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=17.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHH
Q psy2797 45 LDPLSEEIWVAIIFSYIMVSVVLFLV 70 (225)
Q Consensus 45 ~~PF~~~vWl~i~~~~~~~~~~l~~~ 70 (225)
-.++.|..|+.+++.++++.+++++.
T Consensus 43 ~~~~~~~~~ii~i~~v~~~~~~~flY 68 (75)
T PHA02844 43 VCSSSTKIWILTIIFVVFATFLTFLY 68 (75)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889987776666665555443
No 53
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=38.48 E-value=96 Score=23.24 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=34.4
Q ss_pred ccccchhhhhhhhhhccCC-CcccC-----CchhhHHH-HHHHHHHHHHHhhhccc
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPR-----SISGRIVG-AVWWFFTLILISSYTAN 157 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~-----s~~~Ril~-~~w~l~~lvl~~~Yta~ 157 (225)
.++.++++..+.++++.|. +..+. +..+.++. ..-.++++++.+..-|.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 4578899999998887765 44444 77888888 44455557777776654
No 54
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.40 E-value=43 Score=21.13 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=21.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhc
Q psy2797 45 LDPLSEEIWVAIIFSYIMVSVVLFLVSRF 73 (225)
Q Consensus 45 ~~PF~~~vWl~i~~~~~~~~~~l~~~~~~ 73 (225)
+.-+..++++.++++++++.++.+++...
T Consensus 13 ~~~~~~pl~l~il~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 13 FGQFPLPLGLLILIAFLLGALLGWLLSLP 41 (68)
T ss_pred eeeccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455788888888888888877777654
No 55
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=37.85 E-value=52 Score=20.40 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Q psy2797 49 SEEIWVAIIFSYIMVSVVLFLVSRF 73 (225)
Q Consensus 49 ~~~vWl~i~~~~~~~~~~l~~~~~~ 73 (225)
.+.+|+.+++.+.++..-+.++.+-
T Consensus 2 ~~~~wlIIviVlgvIigNia~LK~s 26 (55)
T PF11446_consen 2 TWNPWLIIVIVLGVIIGNIAALKYS 26 (55)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHh
Confidence 3678888887776666656666543
No 56
>KOG1420|consensus
Probab=37.22 E-value=19 Score=33.36 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=45.7
Q ss_pred CcccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceee
Q psy2797 107 NDFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAF 161 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~ 161 (225)
.+.+.+++.++++.++...|+ +..-+...||++..++.++++.+.+.|.-.+.-.
T Consensus 285 hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiiel 340 (1103)
T KOG1420|consen 285 HRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIEL 340 (1103)
T ss_pred ccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345678888888888888887 6777899999999999999999999997766543
No 57
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=36.36 E-value=38 Score=28.28 Aligned_cols=28 Identities=21% Similarity=0.505 Sum_probs=23.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhh
Q psy2797 45 LDPLSEEIWVAIIFSYIMVSVVLFLVSR 72 (225)
Q Consensus 45 ~~PF~~~vWl~i~~~~~~~~~~l~~~~~ 72 (225)
.+-|++.+|+++++++++++++++-+..
T Consensus 252 yQFftpgi~mglii~~~ll~IL~~gl~~ 279 (282)
T PF05827_consen 252 YQFFTPGIWMGLIISLVLLSILYVGLSM 279 (282)
T ss_pred heeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999998876654
No 58
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=36.23 E-value=38 Score=25.45 Aligned_cols=33 Identities=45% Similarity=0.703 Sum_probs=27.5
Q ss_pred ecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 3 IAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 3 i~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
+++...+.+|.+.+.|+.|++..+..++++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
T cd00134 63 AAGMTITPERAKQVDFSDPYYKSGQVILVKKGS 95 (218)
T ss_pred eecCcCCHHHHhhccCcccceeccEEEEEECCC
Confidence 344467899999999999999999999998644
No 59
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=35.81 E-value=36 Score=27.66 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=20.1
Q ss_pred CCChHHhhcCCCeEEEEEcCChHHHHHHh
Q psy2797 171 INSVEDLADQSDVLYGTVKDASTYHFFEV 199 (225)
Q Consensus 171 I~sl~dL~~~~~~~~~~~~~s~~~~~l~~ 199 (225)
..+++||.++ ++|+.+++..+.++.+
T Consensus 125 ~~~~~dl~g~---~Igv~~gs~~~~~~~~ 150 (260)
T PRK15010 125 QPTLDSLKGK---HVGVLQGSTQEAYANE 150 (260)
T ss_pred CCChhHcCCC---EEEEecCchHHHHHHH
Confidence 3478999554 9999999988777653
No 60
>PHA03054 IMV membrane protein; Provisional
Probab=35.57 E-value=65 Score=21.02 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=16.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q psy2797 46 DPLSEEIWVAIIFSYIMVSVVLFL 69 (225)
Q Consensus 46 ~PF~~~vWl~i~~~~~~~~~~l~~ 69 (225)
.++.|..|+.+++.++++.+++++
T Consensus 44 ~~~~~~~~ii~l~~v~~~~l~~fl 67 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILLLLIYL 67 (72)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Confidence 578888888887776666665543
No 61
>PHA02819 hypothetical protein; Provisional
Probab=35.37 E-value=65 Score=21.01 Aligned_cols=24 Identities=4% Similarity=0.195 Sum_probs=17.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q psy2797 46 DPLSEEIWVAIIFSYIMVSVVLFL 69 (225)
Q Consensus 46 ~PF~~~vWl~i~~~~~~~~~~l~~ 69 (225)
.++.|..|+.+++.++++.+++++
T Consensus 42 ~~~~~~~~ii~l~~~~~~~~~~fl 65 (71)
T PHA02819 42 KSFLRYYLIIGLVTIVFVIIFIIF 65 (71)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Confidence 578888888887776666665543
No 62
>PHA02650 hypothetical protein; Provisional
Probab=35.31 E-value=64 Score=21.57 Aligned_cols=27 Identities=26% Similarity=0.494 Sum_probs=19.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhh
Q psy2797 46 DPLSEEIWVAIIFSYIMVSVVLFLVSR 72 (225)
Q Consensus 46 ~PF~~~vWl~i~~~~~~~~~~l~~~~~ 72 (225)
.++.|..|+.+++.++++.+++++.-+
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVALFSFFVFK 71 (81)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888887777766666655443
No 63
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.01 E-value=61 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCch
Q psy2797 49 SEEIWVAIIFSYIMVSVVLFLVSRFSPH 76 (225)
Q Consensus 49 ~~~vWl~i~~~~~~~~~~l~~~~~~~~~ 76 (225)
+...|...++.++++.++-+++.|+.+.
T Consensus 4 t~~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 4 TFMTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 3478999999999988888999888764
No 64
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.72 E-value=73 Score=18.77 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHH
Q psy2797 51 EIWVAIIFSYIMVSVV 66 (225)
Q Consensus 51 ~vWl~i~~~~~~~~~~ 66 (225)
++|+..+++++++..+
T Consensus 2 p~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGI 17 (49)
T ss_pred chHHHHHHHHHHHHHH
Confidence 5798888887754444
No 65
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=34.05 E-value=77 Score=18.97 Aligned_cols=22 Identities=14% Similarity=0.465 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy2797 51 EIWVAIIFSYIMVSVVLFLVSR 72 (225)
Q Consensus 51 ~vWl~i~~~~~~~~~~l~~~~~ 72 (225)
++|.++...++.+++++|....
T Consensus 12 ~~~~l~~~~~~Figiv~wa~~p 33 (48)
T cd01324 12 DSWGLLYLALFFLGVVVWAFRP 33 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 7888888888888888887743
No 66
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=32.61 E-value=61 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=26.2
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCCh
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDAS 192 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~ 192 (225)
-+|+.+.....|.+++||.+ +++++.+.+|..
T Consensus 104 iIlvkkgNPknIk~~eDll~-~gi~ivV~dGaG 135 (252)
T COG4588 104 IILVKKGNPKNIKGFEDLLK-PGIGIVVNDGAG 135 (252)
T ss_pred EEEecCCCccccccHHHHhc-CCceEEEeCCCc
Confidence 34666666788999999988 689999999877
No 67
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=30.85 E-value=71 Score=25.73 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=32.2
Q ss_pred HhhhcccceeeeeeccccCCCCChHH--hhcCCCe-EEEEEcCChHHHHHHhc
Q psy2797 151 ISSYTANLAAFLTVERMVNPINSVED--LADQSDV-LYGTVKDASTYHFFEVS 200 (225)
Q Consensus 151 ~~~Yta~L~s~Lt~~~~~~~I~sl~d--L~~~~~~-~~~~~~~s~~~~~l~~~ 200 (225)
+.-|-.+=..+++.+.....+++++| |.+ . ++|+..++..+.++++.
T Consensus 75 S~PY~~~~~~~v~~k~~~~~~~~~~d~~L~g---~~~vgv~~gs~~~~~l~~~ 124 (246)
T TIGR03870 75 TKPYYRSSYVFLTRKDRNLDIKSWNDPRLKK---VSKIGVIFGSPAETMLKQI 124 (246)
T ss_pred ccCcEEeeeEEEEeCCCCCCCCCccchhhcc---CceEEEecCChHHHHHHhc
Confidence 55555444455555443446888876 543 3 89999999999998874
No 68
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=30.60 E-value=53 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.2
Q ss_pred CCChHHhhcCCCeEEEEEcCChHHHHHHh
Q psy2797 171 INSVEDLADQSDVLYGTVKDASTYHFFEV 199 (225)
Q Consensus 171 I~sl~dL~~~~~~~~~~~~~s~~~~~l~~ 199 (225)
..+++||.+ .++|+..++..+.++++
T Consensus 125 ~~~~~dl~g---~~Igv~~g~~~~~~~~~ 150 (259)
T PRK15437 125 QPTVESLKG---KRVGVLQGTTQETFGNE 150 (259)
T ss_pred CCChHHhCC---CEEEEecCcHHHHHHHh
Confidence 347899854 49999999988777664
No 69
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=30.56 E-value=50 Score=24.65 Aligned_cols=34 Identities=41% Similarity=0.687 Sum_probs=27.3
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
+++....+.+|.+.+.++.|++..+..++++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (219)
T smart00062 63 VAAGMTITPERAKQVDFSDPYYKSGQVILVRKDS 96 (219)
T ss_pred EeccccCCHHHHhheeeccceeeceeEEEEecCC
Confidence 4455556788999999999999999999988643
No 70
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=29.09 E-value=40 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=11.2
Q ss_pred cchhHHHHHHHHHHH
Q psy2797 48 LSEEIWVAIIFSYIM 62 (225)
Q Consensus 48 F~~~vWl~i~~~~~~ 62 (225)
|..+.|+.+++.++.
T Consensus 22 f~lq~Wv~v~l~v~~ 36 (38)
T PF10853_consen 22 FRLQIWVIVLLAVLG 36 (38)
T ss_pred HHHHHHHHHHHHHHh
Confidence 567899888876653
No 71
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.55 E-value=38 Score=24.75 Aligned_cols=21 Identities=24% Similarity=0.497 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy2797 53 WVAIIFSYIMVSVVLFLVSRF 73 (225)
Q Consensus 53 Wl~i~~~~~~~~~~l~~~~~~ 73 (225)
|+++++.++++.+++.++.++
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 777887777766666666654
No 72
>KOG3827|consensus
Probab=27.19 E-value=1.7e+02 Score=25.83 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=47.7
Q ss_pred CcccccchhhhhhhhhhccCCCc---ccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecccc
Q psy2797 107 NDFSLSNSFWFSLGAFMQQGSDI---SPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERMV 168 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~qg~~~---~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~ 168 (225)
...++..+|++.+-+-...|+.. ....+.+=+++++=++.+.++-++-+|.+.+-++.|+-.
T Consensus 109 nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR 173 (400)
T KOG3827|consen 109 NVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR 173 (400)
T ss_pred eccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 45578889888888777777643 344566667777778888899999999999999988755
No 73
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=26.54 E-value=82 Score=25.28 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=38.5
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCCh--HHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDAS--TYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~--~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+++...-...+.+.+||..+ ++|+..++. .+........ -.|++..+.+..+.+| ++|++
T Consensus 127 ~~~~~~~~~~~~~~~~DL~gk---~v~v~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~Gr~Da~~ 194 (275)
T COG0834 127 VLLVKKDSDIGIKSLEDLKGK---KVGVQLGTTDEAEEKAKKPGPNAKIVAYDSNAEALLALKNGRADAVV 194 (275)
T ss_pred EEEEECCCCcCcCCHHHhCCC---EEEEEcCcchhHHHHHhhccCCceEEeeCCHHHHHHHHHcCCccEEE
Confidence 334433333348899999775 999999999 5555544322 3455556677777777 44443
No 74
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=26.38 E-value=68 Score=26.18 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=30.5
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcChH-HHHHHHHHhhccCCC
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAVN-LVADVVRALGEQKNG 218 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 218 (225)
.+|+|++||.+. ++.+..++.....++..+.. .+-...+....+..|
T Consensus 126 ~~i~s~~Dl~G~---kir~~~~~~~~~~~~~~Ga~~v~~~~~e~~~aL~~G 173 (257)
T TIGR00787 126 KPITKPEDLKGL---KIRIPNSPMNEAQFKALGANPEPMAFSEVYTALQTG 173 (257)
T ss_pred CccCChHHhCCC---EEecCCCHHHHHHHHHcCCcccccCHHHHHHHHHcC
Confidence 679999999664 88887777777788877542 233333434444444
No 75
>PHA02975 hypothetical protein; Provisional
Probab=26.36 E-value=1.2e+02 Score=19.71 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=15.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q psy2797 46 DPLSEEIWVAIIFSYIMVSVVLF 68 (225)
Q Consensus 46 ~PF~~~vWl~i~~~~~~~~~~l~ 68 (225)
.++.|..|+.+++.++++.++++
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~f 62 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTF 62 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 57777777777666655555544
No 76
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=26.33 E-value=34 Score=28.70 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=27.6
Q ss_pred CeecCCCCChhhhhccccccc--ccccCeeEEEEcC
Q psy2797 1 MAIAPLSITSERERVVDFSKP--FMTLGISIMIKKP 34 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p--~~~~~~~~lv~~~ 34 (225)
+++++.+++.+|.+.++|+.| |....+.+++|..
T Consensus 67 lgi~g~~~~~er~~~v~~~~~l~~~~~~lvvvvp~~ 102 (287)
T PRK00489 67 LGITGEDLLEESGADVEELLDLGFGKCRLVLAVPED 102 (287)
T ss_pred EEEcchHHHHHCCCCceEeeeccCCceEEEEEEECC
Confidence 467777888999999999998 6777888888753
No 77
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.52 E-value=1.4e+02 Score=17.51 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy2797 49 SEEIWVAIIFSYIMVSVVLFLV 70 (225)
Q Consensus 49 ~~~vWl~i~~~~~~~~~~l~~~ 70 (225)
...||.+-.++++++..++...
T Consensus 4 ~~yVW~sYg~t~~~l~~l~~~~ 25 (46)
T PF04995_consen 4 GFYVWSSYGVTALVLAGLIVWS 25 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999988777665444
No 78
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=23.54 E-value=44 Score=28.73 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=21.3
Q ss_pred CCChHHhhcCCCeEEEEEcCChHHHHHHh
Q psy2797 171 INSVEDLADQSDVLYGTVKDASTYHFFEV 199 (225)
Q Consensus 171 I~sl~dL~~~~~~~~~~~~~s~~~~~l~~ 199 (225)
|+|++||..+ ++++.+++..+.++..
T Consensus 98 i~svaDLKGK---kIav~~gs~~~~ll~~ 123 (328)
T TIGR03427 98 GKSLADLKGQ---KVNLVELSVSHYLLAR 123 (328)
T ss_pred CCCHHHcCCC---EEeccCCChHHHHHHH
Confidence 8999999887 9999998887655443
No 79
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=23.30 E-value=92 Score=25.85 Aligned_cols=26 Identities=19% Similarity=-0.010 Sum_probs=20.7
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHH
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHF 196 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~ 196 (225)
...|++++||.++ ++|+..++..+.+
T Consensus 89 ~s~I~s~~DLkGK---~Igv~~~s~~~~~ 114 (300)
T TIGR01729 89 GSGIEKPEDLKGK---NVAVPFVSTTHYS 114 (300)
T ss_pred CCCCCChhHcCCC---EEEeCCCCcHHHH
Confidence 4679999999876 8999887776544
No 80
>PF15050 SCIMP: SCIMP protein
Probab=22.98 E-value=1.1e+02 Score=22.34 Aligned_cols=17 Identities=41% Similarity=0.864 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy2797 51 EIWVAIIFSYIMVSVVL 67 (225)
Q Consensus 51 ~vWl~i~~~~~~~~~~l 67 (225)
..|+.++++++++++.+
T Consensus 7 nFWiiLAVaII~vS~~l 23 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVL 23 (133)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 56877777776655544
No 81
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.72 E-value=1.4e+02 Score=17.57 Aligned_cols=21 Identities=10% Similarity=0.313 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q psy2797 51 EIWVAIIFSYIMVSVVLFLVS 71 (225)
Q Consensus 51 ~vWl~i~~~~~~~~~~l~~~~ 71 (225)
..|.++++.+++++++.|...
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345556666666777776664
No 82
>PF11374 DUF3176: Protein of unknown function (DUF3176); InterPro: IPR021514 This eukaryotic family of proteins has no known function.
Probab=22.15 E-value=2.2e+02 Score=20.30 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=34.3
Q ss_pred EEEEcCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhh
Q psy2797 29 IMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSYIMVSVVLFLVSRFSPHEWR 79 (225)
Q Consensus 29 ~lv~~~~~~~~~~~~~~~PF~~~vWl~i~~~~~~~~~~l~~~~~~~~~~~~ 79 (225)
++....++..++|- . +.+.++++.++.++.-.+++.-+.+-++..+|.
T Consensus 4 iL~~~dgk~~~~W~-~--~isln~~isilsti~~a~l~~~v~~~l~QlkW~ 51 (111)
T PF11374_consen 4 ILRVYDGKPVPSWP-F--GISLNTLISILSTIAKAALLFPVSEGLSQLKWN 51 (111)
T ss_pred eehhhCCcccccCC-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344345552 2 568899999999998888888888887777786
No 83
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=21.42 E-value=1.5e+02 Score=16.29 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHhhhc
Q psy2797 136 GRIVGAVWWFFTLILISSYT 155 (225)
Q Consensus 136 ~Ril~~~w~l~~lvl~~~Yt 155 (225)
+-++=++.+++++++++.|.
T Consensus 5 CYiLDgiL~iYgiiiT~L~~ 24 (33)
T PF11628_consen 5 CYILDGILFIYGIIITALYC 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHH
Confidence 44667788899999998874
No 84
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=20.39 E-value=2e+02 Score=16.79 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=16.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q psy2797 47 PLSEEIWVAIIFSYIMVSVVLFL 69 (225)
Q Consensus 47 PF~~~vWl~i~~~~~~~~~~l~~ 69 (225)
+....||.+-.++++++..++..
T Consensus 3 gy~~yVW~sYg~t~l~l~~li~~ 25 (45)
T TIGR03141 3 GYAFYVWLAYGITALVLAGLILW 25 (45)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999998877655533
No 85
>PHA02692 hypothetical protein; Provisional
Probab=20.30 E-value=1.9e+02 Score=18.89 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=12.0
Q ss_pred cccchhHHHHH-HHHHHHHHHH
Q psy2797 46 DPLSEEIWVAI-IFSYIMVSVV 66 (225)
Q Consensus 46 ~PF~~~vWl~i-~~~~~~~~~~ 66 (225)
.++.|..|+.+ ++..+++.++
T Consensus 41 ~~~~~~~~ii~~~~~~~~~vll 62 (70)
T PHA02692 41 KGVPWTTVFLIGLIAAAIGVLL 62 (70)
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 46777777777 4444433333
Done!