Query psy2797
Match_columns 225
No_of_seqs 137 out of 1690
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 17:10:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 6.1E-34 2.1E-38 267.5 9.1 205 1-216 465-669 (823)
2 1yae_A Glutamate receptor, ion 98.7 2.3E-08 7.9E-13 83.2 6.8 100 1-209 94-193 (312)
3 2k1e_A Water soluble analogue 98.0 9.9E-06 3.4E-10 56.7 6.5 58 109-166 39-97 (103)
4 2ih3_C Voltage-gated potassium 97.8 2.3E-05 7.8E-10 56.5 5.5 58 108-165 59-117 (122)
5 2a9h_A Voltage-gated potassium 97.8 5.1E-05 1.7E-09 57.0 6.6 60 108-167 82-142 (155)
6 3eff_K Voltage-gated potassium 97.6 0.00011 3.8E-09 54.0 6.5 57 108-164 38-95 (139)
7 4h33_A LMO2059 protein; bilaye 97.6 0.00016 5.4E-09 53.1 6.6 57 109-165 42-99 (137)
8 3g3k_A Glutamate receptor, ion 97.5 0.00037 1.3E-08 55.5 8.4 42 169-210 119-160 (259)
9 3ouf_A Potassium channel prote 97.4 0.00027 9.3E-09 48.7 5.3 60 109-168 31-91 (97)
10 3ldc_A Calcium-gated potassium 97.3 0.0008 2.7E-08 44.8 6.4 53 110-162 28-81 (82)
11 2q67_A Potassium channel prote 97.2 0.00074 2.5E-08 47.9 6.1 57 109-165 48-105 (114)
12 2rc8_A Glutamate [NMDA] recept 97.1 0.00044 1.5E-08 56.7 5.1 34 1-34 119-152 (294)
13 3vou_A ION transport 2 domain 97.1 0.0012 4.3E-08 48.9 6.6 56 109-164 51-107 (148)
14 1orq_C Potassium channel; volt 96.9 0.0014 4.8E-08 51.7 5.5 56 109-164 164-220 (223)
15 3pjs_K KCSA, voltage-gated pot 96.8 0.00063 2.1E-08 51.5 2.8 59 108-166 65-124 (166)
16 1p7b_A Integral membrane chann 96.7 0.0042 1.4E-07 52.3 7.4 60 109-168 95-155 (333)
17 1mqi_A Glutamate receptor 2; G 96.4 0.011 3.7E-07 46.9 7.7 32 2-33 86-117 (263)
18 3beh_A MLL3241 protein; transm 96.2 0.0068 2.3E-07 51.1 6.0 56 110-165 161-217 (355)
19 2qks_A KIR3.1-prokaryotic KIR 95.9 0.011 3.9E-07 49.4 5.8 59 110-168 78-137 (321)
20 2r9r_B Paddle chimera voltage 95.9 0.0081 2.8E-07 53.5 4.9 56 109-164 374-430 (514)
21 1xl4_A Inward rectifier potass 95.7 0.018 6.2E-07 47.7 6.2 59 108-166 80-139 (301)
22 1pb7_A N-methyl-D-aspartate re 95.2 0.007 2.4E-07 49.4 2.1 35 1-35 120-154 (292)
23 2a5s_A N-methyl-D-aspartate re 95.1 0.0095 3.3E-07 48.3 2.5 35 1-35 108-142 (284)
24 3ukm_A Potassium channel subfa 95.0 0.021 7.2E-07 46.7 4.3 69 109-177 200-276 (280)
25 4gx0_A TRKA domain protein; me 95.0 0.031 1.1E-06 50.1 5.7 54 109-162 50-105 (565)
26 4h5g_A Amino acid ABC superfam 94.5 0.015 5.2E-07 45.7 2.1 34 2-35 78-111 (243)
27 3um7_A Potassium channel subfa 94.4 0.029 9.9E-07 46.6 3.6 58 107-164 112-170 (309)
28 1lnq_A MTHK channels, potassiu 93.3 0.017 6E-07 48.2 0.4 59 109-167 44-103 (336)
29 2v3u_A Glutamate receptor delt 93.3 0.042 1.4E-06 43.3 2.6 34 2-35 82-115 (265)
30 3um7_A Potassium channel subfa 92.9 0.12 4E-06 42.9 4.8 55 110-164 224-285 (309)
31 3ukm_A Potassium channel subfa 92.6 0.066 2.3E-06 43.8 2.9 59 107-165 90-149 (280)
32 3sya_A G protein-activated inw 92.2 0.49 1.7E-05 39.7 7.7 61 108-168 89-152 (340)
33 3i6v_A Periplasmic His/Glu/Gln 90.5 0.13 4.6E-06 39.7 2.6 33 2-34 68-100 (232)
34 4gvo_A LMO2349 protein; struct 90.4 0.15 5.1E-06 39.8 2.7 32 2-33 73-104 (243)
35 3kzg_A Arginine 3RD transport 88.6 0.24 8.2E-06 38.1 2.7 34 2-35 67-100 (237)
36 3spc_A Inward-rectifier K+ cha 88.0 1.1 3.6E-05 37.7 6.3 61 108-168 92-155 (343)
37 3kbr_A Cyclohexadienyl dehydra 86.1 0.34 1.2E-05 37.1 2.3 34 2-35 78-111 (239)
38 1lst_A Lysine, arginine, ornit 86.1 0.43 1.5E-05 36.5 2.8 34 2-35 67-100 (239)
39 3rvy_A ION transport protein; 85.3 1.6 5.3E-05 35.3 5.9 60 108-167 178-244 (285)
40 4eq9_A ABC transporter substra 84.8 0.7 2.4E-05 35.4 3.5 32 2-33 71-102 (246)
41 4dz1_A DALS D-alanine transpor 84.1 0.37 1.3E-05 37.8 1.6 60 161-223 119-189 (259)
42 3k4u_A Binding component of AB 83.8 0.55 1.9E-05 36.2 2.4 33 2-34 68-100 (245)
43 4dz1_A DALS D-alanine transpor 83.7 0.36 1.2E-05 37.8 1.3 34 2-35 92-125 (259)
44 3tql_A Arginine-binding protei 83.6 0.61 2.1E-05 35.1 2.6 34 2-35 65-98 (227)
45 3h7m_A Sensor protein; histidi 83.2 0.55 1.9E-05 35.6 2.2 59 162-223 100-163 (234)
46 3hv1_A Polar amino acid ABC up 83.2 0.56 1.9E-05 36.8 2.3 34 2-35 84-117 (268)
47 2iee_A ORF2, probable ABC tran 82.4 0.52 1.8E-05 37.2 1.8 34 2-35 87-120 (271)
48 4f3p_A Glutamine-binding perip 82.0 0.47 1.6E-05 36.8 1.4 56 165-223 116-176 (249)
49 2q88_A EHUB, putative ABC tran 82.0 0.43 1.5E-05 37.1 1.2 63 160-222 102-170 (257)
50 2q88_A EHUB, putative ABC tran 81.4 0.82 2.8E-05 35.4 2.6 34 2-35 76-109 (257)
51 3mpk_A Virulence sensor protei 81.0 0.58 2E-05 36.9 1.6 59 162-223 122-185 (267)
52 4f3p_A Glutamine-binding perip 80.4 0.73 2.5E-05 35.7 2.0 34 2-35 86-119 (249)
53 4i62_A Amino acid ABC transpor 79.3 1 3.5E-05 35.0 2.5 61 160-223 131-196 (269)
54 2pyy_A Ionotropic glutamate re 77.7 0.97 3.3E-05 34.0 1.9 33 2-34 65-97 (228)
55 2y7i_A STM4351; arginine-bindi 77.4 1.4 4.8E-05 33.2 2.8 33 2-34 69-102 (229)
56 4h5g_A Amino acid ABC superfam 77.3 1.1 3.9E-05 34.6 2.2 62 159-223 103-169 (243)
57 1ii5_A SLR1257 protein; membra 77.2 1.3 4.6E-05 33.4 2.6 60 161-223 98-160 (233)
58 3tql_A Arginine-binding protei 76.5 1.3 4.3E-05 33.3 2.3 59 162-223 92-156 (227)
59 3k4u_A Binding component of AB 76.5 1.3 4.3E-05 34.1 2.3 63 160-223 94-161 (245)
60 1wdn_A GLNBP, glutamine bindin 76.3 0.9 3.1E-05 34.1 1.3 34 2-35 65-98 (226)
61 2vha_A Periplasmic binding tra 76.0 1.3 4.3E-05 35.1 2.2 34 2-35 87-120 (287)
62 3del_B Arginine binding protei 75.6 1.1 3.6E-05 34.3 1.6 52 169-223 108-163 (242)
63 1ii5_A SLR1257 protein; membra 75.0 0.86 2.9E-05 34.5 0.9 34 2-35 69-104 (233)
64 3kzg_A Arginine 3RD transport 74.9 1.5 5.2E-05 33.4 2.4 52 169-223 100-156 (237)
65 3qax_A Probable ABC transporte 74.6 1.1 3.8E-05 34.7 1.5 59 162-223 122-184 (268)
66 2pvu_A ARTJ; basic amino acid 74.0 1.8 6.2E-05 33.9 2.6 34 2-35 104-137 (272)
67 3mpk_A Virulence sensor protei 73.0 2.1 7.1E-05 33.5 2.8 31 4-34 97-127 (267)
68 3kbr_A Cyclohexadienyl dehydra 70.9 0.86 2.9E-05 34.8 0.0 40 160-200 104-143 (239)
69 2y7i_A STM4351; arginine-bindi 70.7 2.2 7.6E-05 32.0 2.4 50 171-223 104-158 (229)
70 2yln_A Putative ABC transporte 68.4 2.9 0.0001 33.1 2.7 33 2-34 120-153 (283)
71 2ozz_A Hypothetical protein YH 68.3 0.85 2.9E-05 36.1 -0.5 35 1-35 68-108 (231)
72 4i62_A Amino acid ABC transpor 68.2 2.5 8.7E-05 32.6 2.3 33 2-34 105-137 (269)
73 3h7m_A Sensor protein; histidi 67.8 2 6.9E-05 32.3 1.6 33 3-35 74-106 (234)
74 1wdn_A GLNBP, glutamine bindin 67.7 1.8 6E-05 32.4 1.2 58 163-223 93-155 (226)
75 2yjp_A Putative ABC transporte 66.3 2.9 0.0001 33.2 2.3 52 169-223 154-210 (291)
76 1xt8_A Putative amino-acid tra 64.6 3.2 0.00011 32.9 2.2 34 2-35 110-143 (292)
77 2pyy_A Ionotropic glutamate re 64.4 2.8 9.6E-05 31.3 1.8 52 169-223 102-156 (228)
78 3del_B Arginine binding protei 63.7 3 0.0001 31.7 1.8 32 2-34 74-107 (242)
79 2yjp_A Putative ABC transporte 63.5 3.8 0.00013 32.6 2.5 34 2-35 121-154 (291)
80 2v25_A Major cell-binding fact 63.3 3.1 0.00011 31.8 1.9 33 2-34 105-137 (259)
81 4gvo_A LMO2349 protein; struct 60.8 10 0.00035 29.0 4.5 43 154-199 93-135 (243)
82 2nr1_A NR1 M2, M2; receptor, s 59.7 1.1 3.6E-05 22.6 -0.9 20 107-126 5-24 (27)
83 3hv1_A Polar amino acid ABC up 59.0 3.1 0.00011 32.4 1.1 28 170-200 118-145 (268)
84 1xt8_A Putative amino-acid tra 58.6 4.7 0.00016 31.9 2.2 52 169-223 143-199 (292)
85 1lst_A Lysine, arginine, ornit 58.3 4.3 0.00015 30.6 1.9 49 172-223 104-159 (239)
86 2vha_A Periplasmic binding tra 58.3 3 0.0001 32.9 0.9 52 169-223 120-180 (287)
87 2yln_A Putative ABC transporte 54.8 3.7 0.00013 32.5 1.0 53 168-223 153-208 (283)
88 3qax_A Probable ABC transporte 54.1 8.7 0.0003 29.4 3.0 32 2-34 94-127 (268)
89 4eq9_A ABC transporter substra 50.1 18 0.0006 27.2 4.2 34 163-199 99-132 (246)
90 2v25_A Major cell-binding fact 49.2 4.2 0.00014 31.0 0.4 29 168-199 137-165 (259)
91 2pvu_A ARTJ; basic amino acid 49.0 6.8 0.00023 30.5 1.6 52 169-223 137-194 (272)
92 2a5s_A N-methyl-D-aspartate re 39.1 13 0.00044 29.3 1.9 55 169-223 142-211 (284)
93 2iee_A ORF2, probable ABC tran 38.4 25 0.00085 27.2 3.4 38 160-200 113-150 (271)
94 4dxw_A Navrh, ION transport pr 37.3 47 0.0016 25.3 4.8 55 109-163 164-224 (229)
95 3ix1_A N-formyl-4-amino-5-amin 36.7 24 0.00081 27.9 3.1 27 168-197 95-121 (302)
96 4f4l_A ION transport protein; 31.8 1.2E+02 0.004 20.5 6.3 56 110-165 38-100 (112)
97 3qsl_A Putative exported prote 29.3 42 0.0014 26.7 3.4 26 169-197 128-154 (346)
98 3uif_A Sulfonate ABC transport 29.0 43 0.0015 27.1 3.5 27 168-197 108-134 (348)
99 3ksx_A Nitrate transport prote 27.8 47 0.0016 26.5 3.5 27 168-197 120-146 (324)
100 2x26_A Periplasmic aliphatic s 21.2 74 0.0025 24.9 3.5 26 168-196 94-119 (308)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=6.1e-34 Score=267.50 Aligned_cols=205 Identities=63% Similarity=1.036 Sum_probs=165.0
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhh
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSYIMVSVVLFLVSRFSPHEWRL 80 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~~~~~~~~~~~~PF~~~vWl~i~~~~~~~~~~l~~~~~~~~~~~~~ 80 (225)
++++++++|.+|.+.+|||.||+.++.++++|+|....++++.|++||++.+|++++++++++++++|+++++.|.+|+.
T Consensus 465 ~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~ 544 (823)
T 3kg2_A 465 IAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHT 544 (823)
T ss_dssp EECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC---------
T ss_pred EEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccC
Confidence 47899999999999999999999999999999987666788899999999999999999999999999999999999985
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCCCcccCCchhhHHHHHHHHHHHHHHhhhccccee
Q psy2797 81 LNYSDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGSDISPRSISGRIVGAVWWFFTLILISSYTANLAA 160 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s 160 (225)
+...++..+. .......+++.+++|++++++++||.+..|++.++|++.++|++++++++++|||+|+|
T Consensus 545 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s 613 (823)
T 3kg2_A 545 EEFEDGRETQ-----------SSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 613 (823)
T ss_dssp -------------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc-----------cccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4211110000 00122345788999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcChHHHHHHHHHhhccC
Q psy2797 161 FLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAVNLVADVVRALGEQK 216 (225)
Q Consensus 161 ~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (225)
+||.|+++++|+|++||++++++++++.++++..++|++++.+.|+++++.++..+
T Consensus 614 ~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (823)
T 3kg2_A 614 FLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAE 669 (823)
T ss_dssp HHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCS
T ss_pred HhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcC
Confidence 99999999999999999998889999999999999999999999999998887543
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.69 E-value=2.3e-08 Score=83.24 Aligned_cols=100 Identities=49% Similarity=0.792 Sum_probs=61.6
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhh
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSYIMVSVVLFLVSRFSPHEWRL 80 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~~~~~~~~~~~~PF~~~vWl~i~~~~~~~~~~l~~~~~~~~~~~~~ 80 (225)
++++++++|.+|.+.++||.||+.++.+++++++.....+++.|+.||+ ..
T Consensus 94 ~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~-----------------------~~------ 144 (312)
T 1yae_A 94 LAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGS-----------------------LV------ 144 (312)
T ss_dssp EECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------------
T ss_pred EEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccc-----------------------cC------
Confidence 3567899999999999999999999999999987544567889999999 11
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCccCCcccccchhhhhhhhhhccCCCcccCCchhhHHHHHHHHHHHHHHhhhccccee
Q psy2797 81 LNYSDPGHPHHSPSPHHGPSPPSVIANDFSLSNSFWFSLGAFMQQGSDISPRSISGRIVGAVWWFFTLILISSYTANLAA 160 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qg~~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s 160 (225)
| .
T Consensus 145 --------------p---------~------------------------------------------------------- 146 (312)
T 1yae_A 145 --------------P---------R------------------------------------------------------- 146 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------C---------c-------------------------------------------------------
Confidence 0 0
Q ss_pred eeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcChHHHHHHH
Q psy2797 161 FLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAVNLVADVV 209 (225)
Q Consensus 161 ~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~ 209 (225)
|+++....|++++||.++.++++|+..+++...+|.+...+.|.+++
T Consensus 147 --tv~~~~~~i~~~~dL~g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~ 193 (312)
T 1yae_A 147 --GSERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMW 193 (312)
T ss_dssp ----------CCSHHHHHTCSSSEEECBTTSHHHHHHHHCCBHHHHHHH
T ss_pred --ccccccCCCCCHHHHhhccCceEEEEeCChHHHHHHhccCchHHHHH
Confidence 55777789999999988766789999888888888887665554443
No 3
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.05 E-value=9.9e-06 Score=56.66 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=53.4
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecc
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVER 166 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~ 166 (225)
.++.+++|+++.++...|. +..|.+..+|++..+|++.++.+.+...+.+++.++...
T Consensus 39 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999997 889999999999999999999999999999999887654
No 4
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=97.85 E-value=2.3e-05 Score=56.54 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=53.1
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeec
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVE 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~ 165 (225)
..++.+++|+++.++...|. +..|.+..+|++...|+++++.+.+...+.+++.++..
T Consensus 59 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 59 LITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999996 88999999999999999999999999999999888754
No 5
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=97.78 E-value=5.1e-05 Score=57.03 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=54.4
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeeccc
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERM 167 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~ 167 (225)
..++.+++|+++.+++..|+ +..|.+..+|++..+++++++.+.+..++.+++.++....
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999997 8899999999999999999999999999999999886543
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=97.63 E-value=0.00011 Score=53.99 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=52.3
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
..++.+++|+++.+++..|. +..|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 38 ~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 38 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred cCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999997 8999999999999999999999999999999988854
No 7
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=97.58 E-value=0.00016 Score=53.14 Aligned_cols=57 Identities=21% Similarity=0.494 Sum_probs=52.3
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeec
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVE 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~ 165 (225)
.++.+++|+++.+++..|. +..|.+..+|++..+|+++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999997 89999999999999999999999999999999888643
No 8
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=97.50 E-value=0.00037 Score=55.47 Aligned_cols=42 Identities=36% Similarity=0.627 Sum_probs=34.1
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcChHHHHHHHH
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAVNLVADVVR 210 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~ 210 (225)
.+|++++||.++..+++|+..+++...++.+.....|+++++
T Consensus 119 ~~i~~~~dL~g~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T 3g3k_A 119 TPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYDKMWA 160 (259)
T ss_dssp SSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHHHHHH
T ss_pred ccccCHHHhccCCCceEEEecCcHHHHHHhhccchhHHHHHH
Confidence 358899999887677899999999999999988776665433
No 9
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=97.37 E-value=0.00027 Score=48.68 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=54.4
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecccc
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERMV 168 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~ 168 (225)
.++.+++|+.+.++...|. +..|.+..+|++...+.+.++.+.+...+.+++.++.++..
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3678999999999999997 88999999999999999999999999999999988876554
No 10
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=97.26 E-value=0.0008 Score=44.77 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=48.1
Q ss_pred cccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeee
Q psy2797 110 SLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFL 162 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~L 162 (225)
++.+++|+.+.++...|. +..|.+..+|++...+.+.++.+.+...+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999997 88999999999999999999999999988877643
No 11
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=97.21 E-value=0.00074 Score=47.89 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=51.1
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeec
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVE 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~ 165 (225)
.++.+++|+++.++...|. +..|.+..+|++...|.+.++.+.+...+.+++.++..
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999997 88999999999999999999999999999998887544
No 12
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=97.14 E-value=0.00044 Score=56.68 Aligned_cols=34 Identities=32% Similarity=0.774 Sum_probs=30.3
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
|+++++++|.+|.+.+|||.||+..+..++++++
T Consensus 119 ~~~~~~~~t~eR~~~~~fs~P~~~~~~~i~~~~~ 152 (294)
T 2rc8_A 119 MAVTSFSINTARSQVIDFTSPFFSTSLGILVRTR 152 (294)
T ss_dssp EECSSCBCCHHHHTTSEECSCSEEEEEEEEEETT
T ss_pred EEEeccccCHhHhceEEEccchHhcceEEEEECC
Confidence 3567899999999999999999999999999864
No 13
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=97.09 E-value=0.0012 Score=48.86 Aligned_cols=56 Identities=18% Similarity=0.403 Sum_probs=50.7
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
.++.+++|+++.++...|. +..|.+..+|++..+|.++++.+.+...+++++.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999997 8899999999999999999999999999998876654
No 14
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=96.87 E-value=0.0014 Score=51.72 Aligned_cols=56 Identities=13% Similarity=0.334 Sum_probs=51.0
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
.++.+++|+++.+++..|. +..|.+..+|++...+++.|+.+.+...|.+++.++.
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999996 8899999999999999999999999999999887763
No 15
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=96.79 E-value=0.00063 Score=51.54 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=53.9
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecc
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVER 166 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~ 166 (225)
..++.+++|+++.+++..|+ +..|.+..+|++.++|+++++++.+...+.+++.++...
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999997 899999999999999999999999999999999988433
No 16
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=96.70 E-value=0.0042 Score=52.27 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=54.5
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecccc
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERMV 168 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~ 168 (225)
.++.+++|+++.+++..|+ +..|.+..+|++..++.+.++++.+..++.+++.++.++..
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r 155 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999997 78999999999999999999999999999999999877643
No 17
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=96.38 E-value=0.011 Score=46.86 Aligned_cols=32 Identities=81% Similarity=1.171 Sum_probs=21.8
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEc
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKK 33 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~ 33 (225)
+++++++|.+|.+.++||.||+.++..+++++
T Consensus 86 ~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~ 117 (263)
T 1mqi_A 86 AIAPLTITLVREEVIDFSKPFMSLGISIMIKK 117 (263)
T ss_dssp ECSSCBCCHHHHTTEEECSCSEEECEEEEEET
T ss_pred EEEeeEecHHHHhhcccccceecccEEEEEcC
Confidence 34566777777777777777777766666653
No 18
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=96.22 E-value=0.0068 Score=51.10 Aligned_cols=56 Identities=20% Similarity=0.394 Sum_probs=51.0
Q ss_pred cccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeec
Q psy2797 110 SLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVE 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~ 165 (225)
++.+++|+++.+++..|. +..|.+..+|++...++++++++.+...+.+++.+...
T Consensus 161 ~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 217 (355)
T 3beh_A 161 SIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE 217 (355)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999886 88999999999999999999999999999998877643
No 19
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=95.91 E-value=0.011 Score=49.39 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=54.0
Q ss_pred cccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecccc
Q psy2797 110 SLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERMV 168 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~ 168 (225)
++.+++|+++.++...|+ +..|.+..+|++..++.+.++++.+.-+|.+++.++.++..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999997 88999999999999999999999999999999998876543
No 20
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=95.87 E-value=0.0081 Score=53.54 Aligned_cols=56 Identities=21% Similarity=0.459 Sum_probs=50.3
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
.++.+++|+++.+++..|. +..|.+..+|++..+++++++++.+.+.|.+.+.+..
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999886 7899999999999999999999999999998876554
No 21
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=95.72 E-value=0.018 Score=47.68 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=53.5
Q ss_pred cccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecc
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVER 166 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~ 166 (225)
..++.+++|+++.++...|+ +..|.+..+|++..++.+.++++.+..++.+.+.++.++
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34788999999999999887 889999999999999999999999999999998887664
No 22
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=95.23 E-value=0.007 Score=49.39 Aligned_cols=35 Identities=46% Similarity=0.868 Sum_probs=31.8
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
|+++++++|.+|.+.+|||.||+..+..++++++.
T Consensus 120 ~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~ 154 (292)
T 1pb7_A 120 MIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT 154 (292)
T ss_dssp EECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC
T ss_pred EEEeeeEecHHHhcceEechhhHhcCeEEEEECCc
Confidence 46788999999999999999999999999998764
No 23
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=95.11 E-value=0.0095 Score=48.28 Aligned_cols=35 Identities=49% Similarity=0.853 Sum_probs=31.5
Q ss_pred CeecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 1 MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 1 ~ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++++|.+|.+.+|||.||+.++..++++++.
T Consensus 108 ~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 142 (284)
T 2a5s_A 108 MAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT 142 (284)
T ss_dssp EECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC
T ss_pred EEEEEEEEeccccceEEeccCchhcCEEEEEECCc
Confidence 35678999999999999999999999999999754
No 24
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=95.02 E-value=0.021 Score=46.75 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=54.9
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCch-------hhHHHHHHHHHHHHHHhhhcccceeeeeeccccCCCCChHHh
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSIS-------GRIVGAVWWFFTLILISSYTANLAAFLTVERMVNPINSVEDL 177 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~-------~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~~~I~sl~dL 177 (225)
.++.+++|+++-++...|. +..|.+.. +|++..+|.++++.+.+...+.+++.+...+....+..-+|+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4678999999999999887 77887774 599999999999999999999999988877766555544444
No 25
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=94.95 E-value=0.031 Score=50.06 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=46.4
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhccc-ceeee
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTAN-LAAFL 162 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~-L~s~L 162 (225)
.++.+++||++.++...|+ +..|.+..+|++..+|.++++.+.+...+. +++++
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999997 789999999999999999998888777766 44444
No 26
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=94.48 E-value=0.015 Score=45.70 Aligned_cols=34 Identities=41% Similarity=0.635 Sum_probs=30.6
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
+++++++|++|.+.++||.||+..+.++++++.+
T Consensus 78 ~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~ 111 (243)
T 4h5g_A 78 AVAGISATDERKEVFDFSIPYYENKISFLVHKAD 111 (243)
T ss_dssp ECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGG
T ss_pred ccccccCChhHccEEEccCccccCcccccccccc
Confidence 4678999999999999999999999999998654
No 27
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=94.38 E-value=0.029 Score=46.58 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=52.1
Q ss_pred CcccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 107 NDFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
...++.+++|+++.++...|+ +..|.+..+|++.+++.++++.+.....+.++..+..
T Consensus 112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999998 8899999999999999999999999999999887753
No 28
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=93.31 E-value=0.017 Score=48.18 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=49.9
Q ss_pred ccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeeccc
Q psy2797 109 FSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERM 167 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~ 167 (225)
.++.+++|+++.+++..|+ +..|.+..+|++..++.++++.+.+...+.+++.++....
T Consensus 44 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999997 7899999999999999999999999999999988887543
No 29
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=93.31 E-value=0.042 Score=43.26 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=30.4
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
+++++++|.+|.+.++||.||+..+.++++++..
T Consensus 82 ~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 115 (265)
T 2v3u_A 82 GISALTITPDRENVVDFTTRYMDYSVGVLLRRGT 115 (265)
T ss_dssp ECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred EEeeeEeehhhhccccccceeeeccEEEEEECCC
Confidence 4578999999999999999999999999998654
No 30
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=92.90 E-value=0.12 Score=42.94 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=46.6
Q ss_pred cccchhhhhhhhhhccCC-CcccCCchhh------HHHHHHHHHHHHHHhhhcccceeeeee
Q psy2797 110 SLSNSFWFSLGAFMQQGS-DISPRSISGR------IVGAVWWFFTLILISSYTANLAAFLTV 164 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~qg~-~~~p~s~~~R------il~~~w~l~~lvl~~~Yta~L~s~Lt~ 164 (225)
++.+++|+.+-++...|. +..|.+..+| ++..+|.++++.+.+...+.++..+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998 7888888887 599999999999998888877766553
No 31
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=92.59 E-value=0.066 Score=43.77 Aligned_cols=59 Identities=12% Similarity=0.261 Sum_probs=52.3
Q ss_pred CcccccchhhhhhhhhhccCC-CcccCCchhhHHHHHHHHHHHHHHhhhcccceeeeeec
Q psy2797 107 NDFSLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLTVE 165 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~qg~-~~~p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~ 165 (225)
...++.+++|+++.+++..|. +..|.+..||++.+++.++++.+...+.+.+...+...
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445889999999999999998 88999999999999999999999999998887766543
No 32
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=92.16 E-value=0.49 Score=39.71 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=54.0
Q ss_pred cccccchhhhhhhhhhccCC-CcccC--CchhhHHHHHHHHHHHHHHhhhcccceeeeeecccc
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DISPR--SISGRIVGAVWWFFTLILISSYTANLAAFLTVERMV 168 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~p~--s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~ 168 (225)
..++.+++|+++.++...|+ +..|. ...+|++..+-.+.++++.+.-+|-+.+.++.|+..
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45789999999999999998 56775 688999999999999999999999999999988755
No 33
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=90.53 E-value=0.13 Score=39.71 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=30.0
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.|.+|.+.++||.||+..+..+++++.
T Consensus 68 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~ 100 (232)
T 3i6v_A 68 IIAGMSITDERDEVIDFTQNYIPPTASSYVATS 100 (232)
T ss_dssp ECSSCBCCHHHHTTSEEEEEEECCCEEEEEESS
T ss_pred EEeCCcCCHHHHhhcCcccccccCCeEEEEECC
Confidence 467899999999999999999999999999864
No 34
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=90.37 E-value=0.15 Score=39.82 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=25.3
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEc
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKK 33 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~ 33 (225)
+++++++|++|.+.++||.|++.....+++.+
T Consensus 73 ~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~ 104 (243)
T 4gvo_A 73 VAHQMEKSKEREKKFLFNDVAYNNFPLQLTVL 104 (243)
T ss_dssp ECSCCBCCHHHHHHSEECSSCCEECCEEEEEE
T ss_pred ecccCCCCHHHhhhhhhhhhhcccccceEEEe
Confidence 56789999999999999999876655544443
No 35
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=88.61 E-value=0.24 Score=38.12 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=30.5
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.|++..+.++++++..
T Consensus 67 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~ 100 (237)
T 3kzg_A 67 VIASMIITDERKKHFIFSLPYMESNSQYITTVDS 100 (237)
T ss_dssp ECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTC
T ss_pred EEEccccChhHhccceeeeeeeecceEEEEECCC
Confidence 5678899999999999999999999999998643
No 36
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=87.98 E-value=1.1 Score=37.70 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=53.3
Q ss_pred cccccchhhhhhhhhhccCC-Ccc--cCCchhhHHHHHHHHHHHHHHhhhcccceeeeeecccc
Q psy2797 108 DFSLSNSFWFSLGAFMQQGS-DIS--PRSISGRIVGAVWWFFTLILISSYTANLAAFLTVERMV 168 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~-~~~--p~s~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~~ 168 (225)
..++.+++|+++.++...|+ +.. |.+..++++..+=.+.++++.+.-+|-+.+.++.|+..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 45789999999999999888 454 45899999999999999999999999999999987754
No 37
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=86.15 E-value=0.34 Score=37.14 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.1
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.|++..+..+++++.+
T Consensus 78 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 111 (239)
T 3kbr_A 78 AMSGISINLERQRQAYFSIPYLRDGKTPITLCSE 111 (239)
T ss_dssp ECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGG
T ss_pred EEeCCcCCHHHcCccccchHHhccCcEEEEECCc
Confidence 3478899999999999999999999999998643
No 38
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=86.12 E-value=0.43 Score=36.50 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=29.7
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.|++..+..+++++..
T Consensus 67 ~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~ 100 (239)
T 1lst_A 67 IISSLSITDKRQQEIAFSDKLYAADSRLIAAKGS 100 (239)
T ss_dssp ECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTC
T ss_pred EEECcCcCHHHhhceeecccceeCceEEEEeCCC
Confidence 4566889999999999999999999999998654
No 39
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=85.33 E-value=1.6 Score=35.27 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=42.3
Q ss_pred cccccchhhhhhhhhhccCCC--c-ccCC----chhhHHHHHHHHHHHHHHhhhcccceeeeeeccc
Q psy2797 108 DFSLSNSFWFSLGAFMQQGSD--I-SPRS----ISGRIVGAVWWFFTLILISSYTANLAAFLTVERM 167 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~qg~~--~-~p~s----~~~Ril~~~w~l~~lvl~~~Yta~L~s~Lt~~~~ 167 (225)
..++.+++|+++.++++.|.. . .|.. ++++.+....++.++++.+.++|-+.+.+.....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999877643 2 2332 3457777777888899999999999988875443
No 40
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=84.78 E-value=0.7 Score=35.38 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=29.4
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEc
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKK 33 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~ 33 (225)
++++++.|.+|.+.++||.|++..+.++++++
T Consensus 71 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~ 102 (246)
T 4eq9_A 71 AVNNLSYTKERAEKYLYAAPIAQNPNVLVVKK 102 (246)
T ss_dssp ECSSCCCCHHHHHHEEECCCCEECCEEEEEET
T ss_pred EecccccChhhhhceeeccceecCceEEEEEC
Confidence 45678999999999999999999999999986
No 41
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=84.12 E-value=0.37 Score=37.77 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=38.8
Q ss_pred eeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----------HHHHHHHHHhhccCCC-ccccc
Q psy2797 161 FLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----------NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 161 ~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----------~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++.......|++++||.++ ++|+.+++..+.++++... ..+....+.++.+.+| +++++
T Consensus 119 ~~~~~~~~~~i~~~~dL~g~---~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~ 189 (259)
T 4dz1_A 119 LVSMANHKITLNNLNELNKY---SIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAF 189 (259)
T ss_dssp EEEETTSCCCCCSGGGGGGS---CEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEE
T ss_pred EEEEcCCCCCCCCHHHhCCC---EEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEE
Confidence 33333444589999999875 9999999999888876422 1233445555555555 44443
No 42
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=83.76 E-value=0.55 Score=36.21 Aligned_cols=33 Identities=33% Similarity=0.686 Sum_probs=29.9
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.|.+|.+.++||.|++..+..+++++.
T Consensus 68 ~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~ 100 (245)
T 3k4u_A 68 IISGMTISQERNLRVNFVEPYIVVGQSLLVKKG 100 (245)
T ss_dssp ECSSCBCCHHHHTTSEECSCSEEECEEEEEETT
T ss_pred EEecCcCCHHHHhhcCcchhhheeceEEEEECC
Confidence 346889999999999999999999999999875
No 43
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=83.65 E-value=0.36 Score=37.85 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=30.1
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.||+..+..++++..+
T Consensus 92 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 125 (259)
T 4dz1_A 92 AFSGISITDKRKKVIDFSEPYYINSFYLVSMANH 125 (259)
T ss_dssp EEEEEECCHHHHTTEEECCCSEEEEEEEEEETTS
T ss_pred EEECCcCCHHHhhccccccchhhCceEEEEEcCC
Confidence 4677889999999999999999999999998654
No 44
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=83.55 E-value=0.61 Score=35.12 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=30.0
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++||.|++..+.++++++..
T Consensus 65 ~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~ 98 (227)
T 3tql_A 65 LFGGMNITTARQKEVDFTDPYYTNSVSFIADKNT 98 (227)
T ss_dssp ECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTS
T ss_pred EEecCcCCHhHHhheecccceeccceEEEEeCCC
Confidence 3477889999999999999999999999998654
No 45
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=83.24 E-value=0.55 Score=35.63 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=39.6
Q ss_pred eeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcChH----HHHHHHHHhhccCCC-ccccc
Q psy2797 162 LTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAVN----LVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 162 Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~ 223 (225)
+.+.+-.+.+++++||.++ ++|+.+++....++.+...+ .+....+.++.+.+| +++++
T Consensus 100 ~~~~~~~~~~~~~~dL~g~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~ 163 (234)
T 3h7m_A 100 IFARRDSPPAAGLEDLRGR---KVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAV 163 (234)
T ss_dssp EEEESSSCCCSSGGGGTTS---CEEEETTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEE
T ss_pred EEEECCCCCCCCHHHhCCC---EEEEEeCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEE
Confidence 3334434469999999665 89999999999999887532 233445556665555 44443
No 46
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=83.17 E-value=0.56 Score=36.79 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=30.2
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.|++..+.++++++..
T Consensus 84 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 117 (268)
T 3hv1_A 84 IWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSS 117 (268)
T ss_dssp ECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGG
T ss_pred EEecCccCHHHHhcCcCcHHHeeCceEEEEECCC
Confidence 4578899999999999999999999999998653
No 47
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=82.45 E-value=0.52 Score=37.24 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.3
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.|++..+..+++++..
T Consensus 87 ~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~ 120 (271)
T 2iee_A 87 AANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDD 120 (271)
T ss_dssp ECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTT
T ss_pred EEeCCcCChhhccceEEeecceeCCeEEEEECCC
Confidence 4556889999999999999999999999997543
No 48
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=82.04 E-value=0.47 Score=36.80 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=38.1
Q ss_pred ccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 165 ERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 165 ~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+-.+.+++++||.++ ++|+.+++....++.+... ..+....+.++.+.+| +++++
T Consensus 116 ~~~~~~i~~~~dL~g~---~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i 176 (249)
T 4f3p_A 116 QANNTTIKSIDDLNGK---VIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAM 176 (249)
T ss_dssp ETTCCSCCSSGGGTTS---EEEEETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEE
T ss_pred ECCCCCcCChHHhCCC---EEEEeCCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEE
Confidence 3434579999999664 9999999999998887632 2334455556665555 44443
No 49
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=81.97 E-value=0.43 Score=37.06 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=39.0
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh-----HHHHHHHHHhhccCCC-cccc
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV-----NLVADVVRALGEQKNG-LNPL 222 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~-----~~~~~~~~~~~~~~~~-~~~~ 222 (225)
..++.+.....+++++||.++++.++|+.+++....++++... ..+....+.++.+.+| ++++
T Consensus 102 ~~~~~~~~~~~i~~~~dL~~~~g~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~ 170 (257)
T 2q88_A 102 AFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVY 170 (257)
T ss_dssp EEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEE
T ss_pred EEEEECCCccCCCCHHHHhccCCceEEEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEE
Confidence 3444333323699999998433459999999999999887632 1233444455554444 4443
No 50
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=81.40 E-value=0.82 Score=35.42 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=29.6
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.|.+|.+.++||.|++..+..+++++..
T Consensus 76 ~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~ 109 (257)
T 2q88_A 76 ITAGLFMKPERCAAVAYSQPILCDAEAFALKKGN 109 (257)
T ss_dssp ECSCCBCCHHHHTTSEECSCCCEECEEEEEETTC
T ss_pred EEecccCCHHHHhccccccchhcCceEEEEECCC
Confidence 3467889999999999999999999999998653
No 51
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=81.01 E-value=0.58 Score=36.86 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=38.7
Q ss_pred eeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 162 LTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 162 Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
+.+.+-.+.+++++||.++ ++|+.+++....++++... ..+....+.++.+.+| +++++
T Consensus 122 l~~~~~~~~i~~~~dL~g~---~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i 185 (267)
T 3mpk_A 122 IVTRQDPDAPVDADHLDGR---TVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVV 185 (267)
T ss_dssp EEEESSTTSCSSGGGCTTC---EEEEETTCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEE
T ss_pred EEEECCCCCCCCHHHHCCC---EEEEeCCchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEE
Confidence 3334445679999999765 9999999999999886542 1233444555555555 44443
No 52
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=80.38 E-value=0.73 Score=35.65 Aligned_cols=34 Identities=29% Similarity=0.695 Sum_probs=30.2
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++||.|++..+..+++++..
T Consensus 86 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 119 (249)
T 4f3p_A 86 ALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANN 119 (249)
T ss_dssp EEEEEECCHHHHTTEEECSCCEEEEEEEEEETTC
T ss_pred EEeccccCHHHHcCcceecceeeccEEEEEECCC
Confidence 4667889999999999999999999999998654
No 53
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=79.32 E-value=1 Score=34.98 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=38.8
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
..++.+....+|++++||.++ ++|+..++....++.+... ..+....+.++.+.+| +++++
T Consensus 131 ~~~~~~~~~~~i~~~~dL~g~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~ 196 (269)
T 4i62_A 131 KLIVKKSDLATYQSVNDLAQK---KVGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVI 196 (269)
T ss_dssp EEEEEGGGTTTCSSGGGGC-C---EEEEETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEE
T ss_pred EEEEECCccccccCHHHhCCC---eEEEecCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEE
Confidence 344444444789999999764 9999999999988877532 1233344455555555 44443
No 54
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=77.68 E-value=0.97 Score=33.98 Aligned_cols=33 Identities=45% Similarity=0.745 Sum_probs=28.6
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.+.+|.+.++|+.|++..+..+++++.
T Consensus 65 ~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~ 97 (228)
T 2pyy_A 65 GIAAISITAEREQNFDFSLPIFASGLQIMVRNL 97 (228)
T ss_dssp ECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC-
T ss_pred EEeccccCHHHHccceecccchhcceEEEEECC
Confidence 456788899999999999999999999999864
No 55
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=77.37 E-value=1.4 Score=33.17 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=28.8
Q ss_pred eecCCCCChhhhhccccccccccc-CeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTL-GISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~-~~~~lv~~~ 34 (225)
++++++.+.+|.+.++|+.|++.. +..+++++.
T Consensus 69 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 102 (229)
T 2y7i_A 69 VIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKG 102 (229)
T ss_dssp ECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETT
T ss_pred EEecCccCHHHhcceeeccccccCCcEEEEEeCC
Confidence 345788999999999999999999 999999864
No 56
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=77.31 E-value=1.1 Score=34.62 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=42.7
Q ss_pred eeeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 159 AAFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 159 ~s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+.++.......+++++||.++ ++++..++..+.++.+... ..+.+..+.++.+.+| +++++
T Consensus 103 ~~~~v~~~~~~~~~~~~dl~g~---~i~v~~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~ 169 (243)
T 4h5g_A 103 ISFLVHKADVEKYKDLTSLESA---NIAAQKGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVH 169 (243)
T ss_dssp EEEEEEGGGTTTCCSHHHHHTS---EEEEETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEE
T ss_pred ccccccccccccccccccCCCC---EEEecCCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEE
Confidence 4456656666789999999776 9999999999998887643 2344445555555555 44443
No 57
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=77.19 E-value=1.3 Score=33.36 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=37.7
Q ss_pred eeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh--HHHHHHHHHhhccCCC-ccccc
Q psy2797 161 FLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV--NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 161 ~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++.......+++++||.++ ++++.+++....++++... ..+....+.++.+.+| +++++
T Consensus 98 ~~~~~~~~~~i~~~~dL~g~---~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~g~vDa~~ 160 (233)
T 1ii5_A 98 LLIPGTATPLFRSVGDLKNK---EVAVVRDTTAVDWANFYQADVRETNNLTAAITLLQKKQVEAVM 160 (233)
T ss_dssp EEEEGGGTTTCSSGGGGTTC---EEEEETTSHHHHHHHHTTCEEEEESSHHHHHHHHHTTSCSEEE
T ss_pred EEEECCCCCCCCCHHHhCCC---eEEEECCccHHHHHHHcCCCeEEcCCHHHHHHHHHcCCccEEE
Confidence 34433332389999999765 9999999999999887533 1223334445544455 44443
No 58
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=76.55 E-value=1.3 Score=33.28 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=39.1
Q ss_pred eeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh-----HHHHHHHHHhhccCCC-ccccc
Q psy2797 162 LTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV-----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 162 Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~-----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
+...+-.+.+++++||.++ ++|+.+++....++++... ..+....+.++.+.+| +++++
T Consensus 92 l~~~~~~~~~~~~~dL~g~---~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~ 156 (227)
T 3tql_A 92 FIADKNTPLTLSKQGLKGK---IIGVQGGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVV 156 (227)
T ss_dssp EEEETTSCCCCSTTTTTTC---EEEEETTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEE
T ss_pred EEEeCCCCCCCCHHHhCCC---EEEEEecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEE
Confidence 3344434445899999664 9999999999888877632 2344455666666666 55544
No 59
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=76.46 E-value=1.3 Score=34.10 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=41.5
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
..++.+....++++++||.+ .+.++|+..++....++.+... ..+....+.++.+.+| +++++
T Consensus 94 ~~~~~~~~~~~i~~~~dL~~-~g~~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i 161 (245)
T 3k4u_A 94 SLLVKKGLEKGVKSYKDLDK-PELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFI 161 (245)
T ss_dssp EEEEETTTTTTCCSGGGGCC-SSCEEEEETTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEE
T ss_pred EEEEECCcccccCCHHHhcc-CCcEEEEeCCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEE
Confidence 44554444478999999974 3569999999999998887532 2333444555555555 44443
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=76.26 E-value=0.9 Score=34.11 Aligned_cols=34 Identities=35% Similarity=0.677 Sum_probs=29.2
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++|+.|++..+..+++++..
T Consensus 65 ~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~ 98 (226)
T 1wdn_A 65 ALAGITITDERKKAIDFSDGYYKSGLLVMVKANN 98 (226)
T ss_dssp EEEEEECCHHHHTTSEECSCCEEEEEEEEEETTC
T ss_pred EEEcCcCCHHHhCccccccchhcCceEEEEeCCC
Confidence 4566778999999999999999999999998653
No 61
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=75.96 E-value=1.3 Score=35.14 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=29.5
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++||.|++..+..+++++..
T Consensus 87 ~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~ 120 (287)
T 2vha_A 87 ECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG 120 (287)
T ss_dssp ECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS
T ss_pred EeccccCCcchhhcccccceeeecceEEEEECCC
Confidence 4567889999999999999999999999998643
No 62
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=75.60 E-value=1.1 Score=34.34 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=37.0
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh---HHHHHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV---NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++++++||.++ ++|+..++....++.+... ..+....+.++.+.+| +++++
T Consensus 108 ~~i~~~~dL~g~---~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~ 163 (242)
T 3del_B 108 ENKHPLPLTQYR---SVAVQTGTYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAV 163 (242)
T ss_dssp CCSCCCCGGGSS---CEEEETTSHHHHHHHHSTTCCEEEESSHHHHHHHHHTTSSSEEE
T ss_pred CCCCCHHHhCCC---EEEEEcCcHHHHHHHhCCCceEEEECCHHHHHHHHHcCCCCEEE
Confidence 789999999765 8999999999999987321 2344555566666666 55544
No 63
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=75.01 E-value=0.86 Score=34.47 Aligned_cols=34 Identities=32% Similarity=0.727 Sum_probs=29.5
Q ss_pred eecCCCCChhhh--hcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERE--RVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~--~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|. +.++|+.|++..+.++++++..
T Consensus 69 ~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~ 104 (233)
T 1ii5_A 69 LIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTA 104 (233)
T ss_dssp EEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGG
T ss_pred EEeeeecCccccccceeEEccceeecCeEEEEECCC
Confidence 456678899999 9999999999999999998653
No 64
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=74.94 E-value=1.5 Score=33.40 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++++++||.++ ++|+..++....++.+... ..+....+.++.+.+| +++++
T Consensus 100 ~~~~~~~dL~g~---~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~ 156 (237)
T 3kzg_A 100 SKISTFDDLHGK---KIGVRKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASL 156 (237)
T ss_dssp CSCCSGGGGTTC---EEEEETTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEE
T ss_pred CCCCCHHHhCCC---EEEEecCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEE
Confidence 349999999765 9999999997777776543 2334445555555555 44443
No 65
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=74.59 E-value=1.1 Score=34.71 Aligned_cols=59 Identities=7% Similarity=-0.001 Sum_probs=39.6
Q ss_pred eeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh---HHHHHHHHHhhccCCC-ccccc
Q psy2797 162 LTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV---NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 162 Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
+.+++-..++++++||.++ ++++..++....++.+... ..+....+.++.+.+| +++++
T Consensus 122 ~~~~~~~~~i~~~~dL~g~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~ 184 (268)
T 3qax_A 122 MVVSKRSLETPVLPLTQYS---SVAVQTGTYQEHYLLSQPGICVRSFDSTLEVIMEVRYGKSPVAV 184 (268)
T ss_dssp EEEEETTSCSCCCCGGGSS---CEEEETTSHHHHHHHTSTTCCEEEESCHHHHHHHHHTTSSSEEE
T ss_pred EEEECCCCCCCCHHHhCCC---EEEEecCcHHHHHHHhCCCceEEecCCHHHHHHHHHcCCCCEEE
Confidence 3444433789999999765 8999999999999987322 2334455556666655 44443
No 66
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=74.03 E-value=1.8 Score=33.92 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=29.5
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++|+.|++..+..+++++..
T Consensus 104 ~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~ 137 (272)
T 2pvu_A 104 GISGITITDERKQSYDFSDPYFEATQVILVKQGS 137 (272)
T ss_dssp ECSSCBCCHHHHTTEEECSCCEEECEEEEEETTC
T ss_pred EEeCCcCCHHHHhcCccchhhhccceEEEEECCC
Confidence 4567788999999999999999999999998644
No 67
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=72.96 E-value=2.1 Score=33.54 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=28.3
Q ss_pred cCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 4 APLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 4 ~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++.|.+|.+.++||.|++..+..+++++.
T Consensus 97 ~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~ 127 (267)
T 3mpk_A 97 GALFVNSARESFLSFSRPYVRNGMVIVTRQD 127 (267)
T ss_dssp EEEECCGGGTTTEEECSCSEEECEEEEEESS
T ss_pred ecccCChhhhcceEechhhccCceEEEEECC
Confidence 4778899999999999999999999999865
No 68
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=70.87 E-value=0.86 Score=34.80 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=30.5
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhc
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVS 200 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~ 200 (225)
..++.+.....+++++||.+ .+.++|+..++..+.++++.
T Consensus 104 ~~~~~~~~~~~i~~~~dL~~-~g~~v~~~~g~~~~~~l~~~ 143 (239)
T 3kbr_A 104 TPITLCSEEARFQTLEQIDQ-PGVTAIVNPGGTNEKFARAN 143 (239)
T ss_dssp EEEEEGGGGGGGSSHHHHSS-TTCEEEECTTSHHHHHHHHH
T ss_pred EEEEECCcccccCCHHHhcC-CCcEEEEcCCCcHHHHHHHh
Confidence 34444444468999999974 35699999999999988875
No 69
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=70.68 E-value=2.2 Score=32.02 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 171 INSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 171 I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
+++++||.++ ++|+.+++....++++... ..+....+.++.+.+| +++++
T Consensus 104 ~~~~~dL~g~---~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~ 158 (229)
T 2y7i_A 104 YHTFADLKGK---KVGLENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVF 158 (229)
T ss_dssp CCSTGGGTTC---EEEEETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEE
T ss_pred CCCHHHHCCC---EEEEecCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEE
Confidence 9999999664 9999999999998886422 1233344445555455 44443
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=68.42 E-value=2.9 Score=33.11 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=28.7
Q ss_pred eecCCCC-ChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSI-TSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~i-t~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++. +.+|.+.++|+.|++..+..+++++.
T Consensus 120 ~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~ 153 (283)
T 2yln_A 120 VANQVGLTSPERQATFDKSEPYSWSGAVLVAHND 153 (283)
T ss_dssp ECSSCCCCSHHHHHHEEECSCSEEECEEEEEETT
T ss_pred EEecCccCChhhhcceEeccCeeeecEEEEEECC
Confidence 4556777 99999999999999999999999864
No 71
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=68.35 E-value=0.85 Score=36.09 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=29.4
Q ss_pred CeecCCCCChh------hhhcccccccccccCeeEEEEcCC
Q psy2797 1 MAIAPLSITSE------RERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 1 ~ai~~~~it~~------R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
||+++.+.+.+ |.+.+||+.|+|.+.-.+++++++
T Consensus 68 ~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~~ 108 (231)
T 2ozz_A 68 MAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGE 108 (231)
T ss_dssp EEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETTC
T ss_pred EEEEecccchhhhcccCeEEEEEcCCCccccCeEEEEeCCC
Confidence 46778888888 999999999999777778887664
No 72
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=68.21 E-value=2.5 Score=32.60 Aligned_cols=33 Identities=42% Similarity=0.654 Sum_probs=29.8
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.+.+|.+.++|+.|++..+..+++++.
T Consensus 105 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~ 137 (269)
T 4i62_A 105 AISGVSKTDERSKVFDFSTPYYTAKNKLIVKKS 137 (269)
T ss_dssp ECSSCBCCHHHHTTEEECSCCEECCEEEEEEGG
T ss_pred EecCCcCCHhHhhceecccchhhcceEEEEECC
Confidence 456788999999999999999999999999875
No 73
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=67.79 E-value=2 Score=32.32 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=28.9
Q ss_pred ecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 3 IAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 3 i~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
+++++.+.+|.+.++||.|++..+.++++++..
T Consensus 74 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 106 (234)
T 3h7m_A 74 LQGISWSEKRARQIDFTPPHTIVYHAIFARRDS 106 (234)
T ss_dssp EEEEECCHHHHTTEEEEEEEEEEEEEEEEESSS
T ss_pred EEeccCCHhHHhhcCCCccccccceEEEEECCC
Confidence 456788999999999999999999999998654
No 74
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=67.70 E-value=1.8 Score=32.42 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=36.8
Q ss_pred eeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcC--h--HHHHHHHHHhhccCCC-ccccc
Q psy2797 163 TVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVSA--V--NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 163 t~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~--~--~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+++-.+.+++++||.++ ++++.+++....++++.. . ..+....+.++.+.+| +++++
T Consensus 93 ~~~~~~~~i~~~~dL~g~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~ 155 (226)
T 1wdn_A 93 MVKANNNDVKSVKDLDGK---VVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVL 155 (226)
T ss_dssp EEETTCCSCSSSTTTTTC---EEEEETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEE
T ss_pred EEeCCCCCCCCHHHhCCC---EEEEEcCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEE
Confidence 333434479999999664 999999999999888742 1 1233344445554455 44443
No 75
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=66.32 E-value=2.9 Score=33.23 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=34.7
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+|++++||.++ ++++..++..+.++++... ..+....+.++.+.+| +++++
T Consensus 154 ~~i~sl~dL~gk---~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~ 210 (291)
T 2yjp_A 154 KPITDMAQLKDQ---TLLVNKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALA 210 (291)
T ss_dssp SCCCSGGGGTTS---EEEEETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEE
T ss_pred CCCCCHHHhCCC---EEEEecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEE
Confidence 379999999654 9999999999888877532 1233344455555555 55543
No 76
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=64.56 E-value=3.2 Score=32.88 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=29.2
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++|+.|++..+..+++++..
T Consensus 110 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 143 (292)
T 1xt8_A 110 ILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS 143 (292)
T ss_dssp ECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC
T ss_pred EeecCCCCcchhcceeeeccceecceEEEEECCC
Confidence 3466788999999999999999999999998643
No 77
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=64.39 E-value=2.8 Score=31.29 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh--HHHHHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV--NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++++++||.++ ++++..++....++++.+. ..+....+.++.+.+| +++++
T Consensus 102 ~~~~~~~dL~g~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~g~~D~~~ 156 (228)
T 2pyy_A 102 GDIRSIDDLPGK---VVATTAGSTAATYLREHHISVLEVPKIEEAYKALQTKKADAVV 156 (228)
T ss_dssp CCCCSGGGCTTC---EEEEETTSHHHHHHHHTTCEEEEESSHHHHHHHHHTTSSSEEE
T ss_pred CCcCCHHHcCCC---eEEEEcCcHHHHHHHHcCCceEecCCHHHHHHHHHcCCCCEEE
Confidence 479999999664 9999999999999987543 1223334444444445 44443
No 78
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=63.67 E-value=3 Score=31.73 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.1
Q ss_pred eecCCCCChhhhhccccccccc--ccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFM--TLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~--~~~~~~lv~~~ 34 (225)
++++++.+.+|.+.++| .|++ ..+..+++++.
T Consensus 74 ~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~ 107 (242)
T 3del_B 74 VITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKG 107 (242)
T ss_dssp ECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEES
T ss_pred EEecCcCCHHHHhcccc-eeeeecCCceEEEEeCC
Confidence 44678999999999999 9999 99999999864
No 79
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=63.51 E-value=3.8 Score=32.57 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=29.4
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcCC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKPS 35 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~~ 35 (225)
++++++.+.+|.+.++|+.|++..+..+++++..
T Consensus 121 ~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~ 154 (291)
T 2yjp_A 121 ILANFTQTPERAEAVDFADPYMKVALGVVSPKNK 154 (291)
T ss_dssp ECSSCBCCHHHHTTEEECCCCEEECEEEEEETTS
T ss_pred EEeCCCCChHHHccceeccCeeecceEEEEeCCC
Confidence 4566788999999999999999999999998643
No 80
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=63.35 E-value=3.1 Score=31.82 Aligned_cols=33 Identities=36% Similarity=0.692 Sum_probs=28.5
Q ss_pred eecCCCCChhhhhcccccccccccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~~~~~~~lv~~~ 34 (225)
++++++.+.+|.+.++|+.|++..+..++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 137 (259)
T 2v25_A 105 VIATFTITPERKRIYNFSEPYYQDAIGLLVLKE 137 (259)
T ss_dssp ECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGG
T ss_pred EEecCccCHHHHhcCcccccceeCceEEEEeCC
Confidence 455677899999999999999999999999864
No 81
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=60.84 E-value=10 Score=28.98 Aligned_cols=43 Identities=28% Similarity=0.164 Sum_probs=31.9
Q ss_pred hcccceeeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHh
Q psy2797 154 YTANLAAFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEV 199 (225)
Q Consensus 154 Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~ 199 (225)
|-..-...+...+-...+++++||.++ ++|+..++..+.++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~dL~g~---~v~v~~gs~~~~~~~~ 135 (243)
T 4gvo_A 93 AYNNFPLQLTVLDSNNSINSTKDLAGK---RVITSATSNGALVLKK 135 (243)
T ss_dssp CCEECCEEEEEETTCCSCSSGGGGTTC---EEEECTTCHHHHHHHH
T ss_pred hcccccceEEEeccccccCchHHhcCC---eEEEecCchHHHHHHH
Confidence 333444456666667899999999765 9999999988777764
No 82
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=59.65 E-value=1.1 Score=22.61 Aligned_cols=20 Identities=35% Similarity=0.948 Sum_probs=16.2
Q ss_pred CcccccchhhhhhhhhhccC
Q psy2797 107 NDFSLSNSFWFSLGAFMQQG 126 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~qg 126 (225)
..+.+..++|++|+.+++.|
T Consensus 5 ~~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 5 DALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cceehhhhHHHhhHhheecc
Confidence 45678899999999998654
No 83
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=59.05 E-value=3.1 Score=32.35 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCCChHHhhcCCCeEEEEEcCChHHHHHHhc
Q psy2797 170 PINSVEDLADQSDVLYGTVKDASTYHFFEVS 200 (225)
Q Consensus 170 ~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~ 200 (225)
.|++++||.++ ++|+..++....++.+.
T Consensus 118 ~i~~~~dL~g~---~i~v~~g~~~~~~l~~~ 145 (268)
T 3hv1_A 118 GIDSVAGMAGK---TLGAQAGSSGYDAFNAS 145 (268)
T ss_dssp CCCSSGGGTTC---CEEEETTCHHHHHHHHC
T ss_pred CCCCHHHhCCC---EEEEEeCCchHHHHHHh
Confidence 89999999664 99999999999888754
No 84
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=58.62 E-value=4.7 Score=31.89 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=34.4
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh----HHHHHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV----NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++++++||.++ ++++..++....++++... ..+....+.++.+.+| +++++
T Consensus 143 ~~i~~~~dL~g~---~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~ 199 (292)
T 1xt8_A 143 SNITSVEDLKDK---TLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALS 199 (292)
T ss_dssp CCCCSSGGGTTS---EEEEETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEE
T ss_pred CCCCCHHHhCCC---EEEEeCCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEE
Confidence 379999999754 9999999999888876532 1233344445555555 44443
No 85
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=58.31 E-value=4.3 Score=30.64 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=32.5
Q ss_pred CChHHhhcCCCeEEEEEcCChHHHHHHhcCh------HHHHHHHHHhhccCCC-ccccc
Q psy2797 172 NSVEDLADQSDVLYGTVKDASTYHFFEVSAV------NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 172 ~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~------~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
++++||.++ ++|+.+++....++++... ..+.+..+.++.+.+| +++++
T Consensus 104 ~~~~dL~g~---~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~ 159 (239)
T 1lst_A 104 PTLESLKGK---HVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAAL 159 (239)
T ss_dssp SSHHHHTTC---EEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEE
T ss_pred CCHHHhCCC---EEEEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEE
Confidence 599999664 8999999999888876521 1233445555555555 44443
No 86
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=58.28 E-value=3 Score=32.88 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=34.2
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh--------HHHHHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV--------NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~--------~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.+|++++||.++ ++|+..++....++++... ..+....+.++.+.+| +++++
T Consensus 120 ~~i~sl~dL~g~---~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i 180 (287)
T 2vha_A 120 GDIKDFADLKGK---AVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFM 180 (287)
T ss_dssp SSCCSGGGGTTC---EEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEE
T ss_pred CCCCCHHHcCCC---EEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEE
Confidence 579999999764 8999999998888776421 1233444555555555 44443
No 87
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=54.76 E-value=3.7 Score=32.49 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=34.0
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHHHhcCh--HHHHHHHHHhhccCCC-ccccc
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFFEVSAV--NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
..+|++++||.++ ++++..++....++++... ..+....+.++.+.+| +++++
T Consensus 153 ~~~i~s~~dL~G~---~v~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~g~vDa~i 208 (283)
T 2yln_A 153 DSNIKSIADIKGV---KTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATL 208 (283)
T ss_dssp TCSCCSGGGCTTS---EEEECTTSHHHHHHHHTTCEEEECSSHHHHHHHHHTTSCCEEE
T ss_pred CCCCCCHHHhCCC---EEEEecCchHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEE
Confidence 3459999999554 9999999999998887532 1222333444444444 44443
No 88
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=54.06 E-value=8.7 Score=29.40 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=28.1
Q ss_pred eecCCCCChhhhhccccccccc--ccCeeEEEEcC
Q psy2797 2 AIAPLSITSERERVVDFSKPFM--TLGISIMIKKP 34 (225)
Q Consensus 2 ai~~~~it~~R~~~~dft~p~~--~~~~~~lv~~~ 34 (225)
++++++.+.+|.+.++| .|++ ..+..+++++.
T Consensus 94 ~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~ 127 (268)
T 3qax_A 94 ILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKR 127 (268)
T ss_dssp ECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEET
T ss_pred EeecCccCHhHhcceee-ecceecccceEEEEECC
Confidence 44678899999999999 9999 99999999865
No 89
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=50.12 E-value=18 Score=27.16 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=27.4
Q ss_pred eeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHh
Q psy2797 163 TVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEV 199 (225)
Q Consensus 163 t~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~ 199 (225)
.+.+-..++++++||.++ ++|+..++....++.+
T Consensus 99 ~~~~~~~~i~~~~dL~g~---~i~~~~g~~~~~~l~~ 132 (246)
T 4eq9_A 99 VVKKDDSSIKSLDDIGGK---STEVVQATTSAKQLEA 132 (246)
T ss_dssp EEETTCCSCSSGGGCTTC---EEEECTTCHHHHHHHH
T ss_pred EEECCCCCCCCHHHhCCC---EEEEecCccHHHHHHH
Confidence 333435689999999765 9999999999888887
No 90
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=49.24 E-value=4.2 Score=31.03 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=23.1
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHHHh
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFFEV 199 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~ 199 (225)
..++++++||.++ ++++..++....++++
T Consensus 137 ~~~i~~~~dL~g~---~i~~~~g~~~~~~~~~ 165 (259)
T 2v25_A 137 EKKYKSLADMKGA---NIGVAQAATTKKAIGE 165 (259)
T ss_dssp GGCCCSGGGCTTC---EEEEETTCSHHHHHHH
T ss_pred CCCCCCHHHhCCC---EEEEecCCchHHHHHH
Confidence 4578999999765 8999999888776654
No 91
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=49.05 E-value=6.8 Score=30.49 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCCCChHHhhcCCCeEEEEEcCChHHHHHHhc-C--h--HHHHHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQSDVLYGTVKDASTYHFFEVS-A--V--NLVADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~-~--~--~~~~~~~~~~~~~~~~-~~~~~ 223 (225)
.++++++||.++ ++++.+++....++++. . . ..+....+.++.+.+| +++++
T Consensus 137 ~~i~~~~dL~g~---~i~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~ 194 (272)
T 2pvu_A 137 SPVKNALDLKGK---TIGVQNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVI 194 (272)
T ss_dssp CCCCSGGGGTTS---CEEEETTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEE
T ss_pred CCCCCHHHhCCC---eEEEEcCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEE
Confidence 449999999665 89999999998888765 1 1 1234445556665556 44443
No 92
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=39.11 E-value=13 Score=29.32 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=35.4
Q ss_pred CCCCChHHhhcC------CCeEEEEEcCChHHHHHHhcChHH------H--HHHHHHhhccCCC-ccccc
Q psy2797 169 NPINSVEDLADQ------SDVLYGTVKDASTYHFFEVSAVNL------V--ADVVRALGEQKNG-LNPLI 223 (225)
Q Consensus 169 ~~I~sl~dL~~~------~~~~~~~~~~s~~~~~l~~~~~~~------~--~~~~~~~~~~~~~-~~~~~ 223 (225)
.++++++||..+ ++.++|+..+++...++.+...+. | ....+.++.+.+| ++|++
T Consensus 142 ~~~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i 211 (284)
T 2a5s_A 142 TQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFI 211 (284)
T ss_dssp CCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEE
T ss_pred cccccccccccCChhHcCCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEE
Confidence 468888888643 156899988888787777654332 2 3445667766666 44543
No 93
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=38.37 E-value=25 Score=27.18 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=27.8
Q ss_pred eeeeeccccCCCCChHHhhcCCCeEEEEEcCChHHHHHHhc
Q psy2797 160 AFLTVERMVNPINSVEDLADQSDVLYGTVKDASTYHFFEVS 200 (225)
Q Consensus 160 s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l~~~ 200 (225)
.+++.......|++++||.++ ++|+..++....++++.
T Consensus 113 ~l~~~~~~~~~i~~~~dL~g~---~i~v~~g~~~~~~l~~~ 150 (271)
T 2iee_A 113 TAIVRKDDLSGIKTLKDLKGK---KAAGAATTVYMEVARKY 150 (271)
T ss_dssp EEEECTTTGGGCSSGGGGTTC---EEESCTTSHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHhCCC---EEEEeCCccHHHHHHHc
Confidence 334433322379999999664 99999999999888764
No 94
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=37.32 E-value=47 Score=25.33 Aligned_cols=55 Identities=7% Similarity=-0.031 Sum_probs=35.4
Q ss_pred ccccchhhhhhhhhhccCCC-c----ccCCchhhHHHHHHHHHH-HHHHhhhcccceeeee
Q psy2797 109 FSLSNSFWFSLGAFMQQGSD-I----SPRSISGRIVGAVWWFFT-LILISSYTANLAAFLT 163 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~qg~~-~----~p~s~~~Ril~~~w~l~~-lvl~~~Yta~L~s~Lt 163 (225)
.++.+++|..+.++++.|-. . ......+.+.+..|.+.+ +++.|.+.|-+.....
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999988876541 1 111223445555555555 8889988887665444
No 95
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=36.74 E-value=24 Score=27.91 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=21.3
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHH
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFF 197 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l 197 (225)
.++|+|++||.++ ++++..++..+.++
T Consensus 95 ~s~i~s~~DL~Gk---~i~~~~~~~~~~~~ 121 (302)
T 3ix1_A 95 EQDFDSPADLVGL---TVGYPGIPVNEPIL 121 (302)
T ss_dssp GGCCSSGGGGTTS---EEEECSCTTHHHHH
T ss_pred CCCCCChHHcCCC---EEEeCCCcchHHHH
Confidence 4689999999876 89999887755443
No 96
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=31.84 E-value=1.2e+02 Score=20.45 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=32.2
Q ss_pred cccchhhhhhhhhhccCC-C-----cccCCchhhHHHHHHHHHH-HHHHhhhcccceeeeeec
Q psy2797 110 SLSNSFWFSLGAFMQQGS-D-----ISPRSISGRIVGAVWWFFT-LILISSYTANLAAFLTVE 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~qg~-~-----~~p~s~~~Ril~~~w~l~~-lvl~~~Yta~L~s~Lt~~ 165 (225)
++.+++..++..++..+= + ..-.+....+.++.|.+.+ +++.+.+.|-+.......
T Consensus 38 ~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~ 100 (112)
T 4f4l_A 38 DLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAIT 100 (112)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred CHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888887765431 1 1122334556666666655 899999999877665543
No 97
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=29.28 E-value=42 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=19.1
Q ss_pred CCCCChHHhhcCCCeEEEEE-cCChHHHHH
Q psy2797 169 NPINSVEDLADQSDVLYGTV-KDASTYHFF 197 (225)
Q Consensus 169 ~~I~sl~dL~~~~~~~~~~~-~~s~~~~~l 197 (225)
++|+|++||.++ ++++. .++..+.++
T Consensus 128 ~~i~s~~DL~Gk---~i~~~~~gs~~~~~~ 154 (346)
T 3qsl_A 128 PGYKGPADLKGR---KIGVTAPGSSTNMVV 154 (346)
T ss_dssp TTCCSGGGGTTC---EEEESSTTSHHHHHH
T ss_pred cCCCChHHcCCC---EEEECCCCcHHHHHH
Confidence 489999999765 89998 566554333
No 98
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=28.99 E-value=43 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=21.0
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHH
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFF 197 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l 197 (225)
.++|+|++||.++ ++++..++..+..+
T Consensus 108 ~s~i~s~~DLkGk---~I~v~~gs~~~~~~ 134 (348)
T 3uif_A 108 NSTAKSIKDLKGK---KIALHRGRPWELAF 134 (348)
T ss_dssp TCCCCSGGGGTTS---EEEECTTSTHHHHH
T ss_pred CCCCCCHHHcCCC---EEEecCCChHHHHH
Confidence 4679999999776 89998887764443
No 99
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=27.80 E-value=47 Score=26.48 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=20.9
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHHH
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHFF 197 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~l 197 (225)
..+|+|++||.++ ++++..++..+..+
T Consensus 120 ~s~I~s~~DLkGk---~i~v~~gs~~~~~~ 146 (324)
T 3ksx_A 120 KSALRTVADLKGK---RIAFQKGSSAHNLL 146 (324)
T ss_dssp TCSCCSGGGGTTC---EEEECTTSHHHHHH
T ss_pred CCCCCCHHHhCCC---EEEecCCChHHHHH
Confidence 4679999999775 89998777665443
No 100
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=21.16 E-value=74 Score=24.87 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.0
Q ss_pred cCCCCChHHhhcCCCeEEEEEcCChHHHH
Q psy2797 168 VNPINSVEDLADQSDVLYGTVKDASTYHF 196 (225)
Q Consensus 168 ~~~I~sl~dL~~~~~~~~~~~~~s~~~~~ 196 (225)
..+|++++||.++ ++++..++..+..
T Consensus 94 ~~~i~s~~dL~Gk---~i~~~~gs~~~~~ 119 (308)
T 2x26_A 94 NSPIKTVADLKGH---KVAFQKGSSSHNL 119 (308)
T ss_dssp TCSCCSGGGGTTS---EEEECTTSHHHHH
T ss_pred CCCCCCHHHcCCC---EEeeeCCCcHHHH
Confidence 3579999999775 8999877766544
Done!