RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2797
         (225 letters)



>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
           {Archaeon Methanothermobacter thermautotrophicus [TaxId:
           145262]}
          Length = 80

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 108 DFSLSNSFWFSLGAFMQQG-SDISPRSISGRIVGAVWWFFTLILISSYTANLAAFL 162
             S + S +++       G  D SP +  G           +   +     L  FL
Sbjct: 25  GESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80


>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 289

 Score = 35.0 bits (79), Expect = 0.005
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 1   MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSY 60
           M +APL+I +ER + ++FSKPF   G++I++KK ++        L   S++   A +   
Sbjct: 117 MIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQS 176


>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
           subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
           10116]}
          Length = 277

 Score = 34.6 bits (78), Expect = 0.007
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 1   MAIAPLSITSERERVVDFSKPFMTLGISIMIKKPSKQKPRVLSFLDPLSEEIWVAIIFSY 60
           MA+  L+I  ER  VVDFS PF+  GIS+M+ +          F  P             
Sbjct: 104 MAVGSLTINEERSEVVDFSVPFVETGISVMVSRQVTGLS-DKKFQRPHDYSPPFRFGTVP 162

Query: 61  IMVSVVLFLVSRFSPHEWRLLNYSDPGHP 89
              S    + + +      +  ++  G  
Sbjct: 163 NG-STERNIRNNYPYMHQYMTRFNQRGVE 190


>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
           (Rattus norvegicus), GluR2 [TaxId: 10116]}
          Length = 260

 Score = 31.9 bits (71), Expect = 0.048
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 1   MAIAPLSITSERERVVDFSKPFMTLGISIMIKKP 34
           +AIAPL+IT  RE V+DFSKPFM+LGISIMIKK 
Sbjct: 83  IAIAPLTITLVREEVIDFSKPFMSLGISIMIKKG 116


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 30.3 bits (68), Expect = 0.054
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 110 SLSNSFWFSLGAFMQQG-SDISPRSISGRIVGAVWWFFTLILISSYTANLAAFLT 163
           +   + W+S+      G  D+ P ++ GR V  V     +      TA LA +  
Sbjct: 40  TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFV 94


>d2ha9a1 c.7.1.5 (A:1-440) Uncharacterized protein SP0239
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 440

 Score = 29.0 bits (65), Expect = 0.48
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 171 INSVEDLADQSDVLYGTVKDASTYHFFEVSAVNLVADVVRALGE 214
           INS+     ++D +  +V   ST     ++AV  +  +++    
Sbjct: 130 INSIPRALAETDKVCSSVNIGSTKSGINMTAVADMGRIIKETAN 173


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 110 SLSNSFWFSLGAFMQQGS-DISPRSISGRIVGAVWWFFTLILISSYTANLAAFLT 163
           S +++F+FS+      G   + P       +  +     ++ ++   + + A  T
Sbjct: 60  SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 114


>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
           candidum [TaxId: 27317]}
          Length = 439

 Score = 26.6 bits (58), Expect = 2.7
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 176 DLAD-QSDVLYGTVKDASTYHFFEVSAVNLVADVVRAL 212
            L + Q D+L G  K    + FF+V+        ++  
Sbjct: 4   PLNNIQGDILVGMKKQKERFVFFQVNDATSFKTALKTY 41


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 110 SLSNSFWFSLGAFMQQG-SDISPRSISGRIVGAVWWFFTLILISSYTANLAAFLT 163
               +F+FS+      G  D+ P+++    +  +  F  +  I+  T  + A   
Sbjct: 61  GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,544
Number of extensions: 38212
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 14
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)