BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy280
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TSU0|C1D_CRIGR Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus
GN=C1D PE=2 SV=1
Length = 141
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 20 LESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--S 73
LES + + +++K + +V KL ++ + DL+ Y +NS++++ L + V+
Sbjct: 21 LESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKE 80
Query: 74 DFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTP 125
VK EL+RI+ M + K+ DK +LD+ A+ RFV+NALW P + +TP
Sbjct: 81 HPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFVKNALWEPKQKNTP 131
>sp|Q5ZHS3|C1D_CHICK Nuclear nucleic acid-binding protein C1D OS=Gallus gallus GN=C1D
PE=2 SV=1
Length = 142
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 2 TLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSL 61
+L +DE+L ++ SE++++++ ++ KL DL+ Y +NS+
Sbjct: 24 SLTSVDEMLKTMMSVSR---------SELLQKLEPLEQAKL--------DLVSAYTLNSM 66
Query: 62 YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
+++ L + ++ VK EL+RI+ M K K+ DK +LDK A+ RFVRNALW P
Sbjct: 67 FWVYLATQGINPKEHPVKQELERIRTYMNKVKEIADKKKA-SKLDKGAASRFVRNALWEP 125
Query: 120 -PE-SDTPCDKKTKDI 133
PE TP K + +
Sbjct: 126 NPENGQTPAKAKKRKM 141
>sp|O35473|C1D_MOUSE Nuclear nucleic acid-binding protein C1D OS=Mus musculus GN=C1d
PE=1 SV=1
Length = 141
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 20 LESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--S 73
LES + + +++K + AV KL ++ + DL+ Y +NS++++ L + V+
Sbjct: 21 LESSLGAVDDMLKTMMAVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKE 80
Query: 74 DFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTP 125
VK EL+RI+ M + K+ DK +LD+ A+ RFV+NALW P TP
Sbjct: 81 HPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFVKNALWEPKAKSTP 131
>sp|Q13901|C1D_HUMAN Nuclear nucleic acid-binding protein C1D OS=Homo sapiens GN=C1D
PE=1 SV=1
Length = 141
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 23/142 (16%)
Query: 6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSL 61
I E LS F NS + + E++K + +V KL ++ + DL+ Y +NS+
Sbjct: 14 IHEYLSAFENS-------IGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSM 66
Query: 62 YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
+++ L + V+ VK EL+RI+ M + K+ DK +LD+ A+ RFV+NALW P
Sbjct: 67 FWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEP 125
Query: 120 PESDTPCDKKTKDIPPVSKKTK 141
K+K+ V+ K K
Sbjct: 126 ---------KSKNASKVANKGK 138
>sp|Q5RBU4|C1D_PONAB Nuclear nucleic acid-binding protein C1D OS=Pongo abelii GN=C1D
PE=2 SV=1
Length = 141
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 15/133 (11%)
Query: 6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSL 61
I E LS F NS + + E++K + +V KL ++ + DL+ Y +NS+
Sbjct: 14 IHEYLSAFENS-------IGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSM 66
Query: 62 YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
+++ L + V+ VK EL+RI+ M + K+ DK +LD+ A+ RFV+NALW P
Sbjct: 67 FWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEP 125
Query: 120 -PESDTPCDKKTK 131
P++ + K K
Sbjct: 126 KPKNASKVANKGK 138
>sp|Q32PE4|C1D_BOVIN Nuclear nucleic acid-binding protein C1D OS=Bos taurus GN=C1D PE=2
SV=1
Length = 141
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 15/133 (11%)
Query: 6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSL 61
I E LS F NS + + E++K + +V KL ++ + DL+ Y +NS+
Sbjct: 14 IHEYLSTFENS-------IGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSM 66
Query: 62 YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
+++ L + V+ VK EL+RI+ M + K+ DK +LD+ A+ RFV+NALW P
Sbjct: 67 FWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEP 125
Query: 120 -PESDTPCDKKTK 131
P++ + K K
Sbjct: 126 KPKNASKVANKGK 138
>sp|Q3KPR1|C1D_XENLA Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis GN=c1d
PE=2 SV=1
Length = 145
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 25/138 (18%)
Query: 6 IDELLSKFINSQHDLESLVDEI-----SEIIKQVQAVDFTKLPNDKKIEADLLVLYAINS 60
I E L F NS ++ ++ ++ SE++++++ ++ KL DL+ Y +NS
Sbjct: 15 IHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKL--------DLVSAYTLNS 66
Query: 61 LYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWT 118
L++I L + ++ VK EL+RI+ M + K+ D+ RLDK A++RF+++AL
Sbjct: 67 LFWIYLTTQGINPKEHPVKEELERIRGYMNRVKEITDRKKAA-RLDKGAARRFIKHAL-- 123
Query: 119 PPESDTPCDKKTKDIPPV 136
CD +++ PP
Sbjct: 124 -------CDPTSEEAPPA 134
>sp|Q5XJ97|C1D_DANRE Nuclear nucleic acid-binding protein C1D OS=Danio rerio GN=c1d PE=2
SV=1
Length = 148
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 51 DLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDAS 108
DL+ YA+NS++++ L + V+ +K EL+RI+ M K K+ D+ +DK+A+
Sbjct: 56 DLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-AHIDKEAA 114
Query: 109 KRFVRNALW 117
RFVRNALW
Sbjct: 115 SRFVRNALW 123
>sp|Q9PAP4|SCPA_XYLFA Segregation and condensation protein A OS=Xylella fastidiosa
(strain 9a5c) GN=scpA PE=3 SV=2
Length = 302
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 29/121 (23%)
Query: 27 ISEIIKQVQAVDFTKLPNDKKIE--ADLLVLYAINSLYFINLR--------IKHVDSDFV 76
++EI +Q VD+ + + + E A+ LV+ AI L I R I++ + +
Sbjct: 77 VAEITRQY--VDYINVMQELRFELAAEYLVMAAI--LAEIKSRMLLPRPPNIENEEGEDP 132
Query: 77 KVELKRIQETMKKFKQTKDKLTIMPRLDKD--ASKRFVRNALWTPPESDTPCDKKTKDIP 134
+ EL R + ++FKQ + L +PRLD+D A+ FV D+ T IP
Sbjct: 133 RAELVRRLQEYERFKQAAEDLDALPRLDRDNSAAHAFV-------------ADQTTVRIP 179
Query: 135 P 135
P
Sbjct: 180 P 180
>sp|Q87BI4|SCPA_XYLFT Segregation and condensation protein A OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=scpA PE=3 SV=1
Length = 302
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 29/121 (23%)
Query: 27 ISEIIKQVQAVDFTKLPNDKKIE--ADLLVLYAINSLYFINLR--------IKHVDSDFV 76
++EI +Q VD+ + + + E A+ LV+ AI L I R I++ + +
Sbjct: 77 VAEITRQY--VDYINVMQELRFELAAEYLVMAAI--LAEIKSRMLLPRPPDIENEEGEDP 132
Query: 77 KVELKRIQETMKKFKQTKDKLTIMPRLDKD--ASKRFVRNALWTPPESDTPCDKKTKDIP 134
+ EL R + ++FKQ + L +PR+D+D A+ FV D+ T IP
Sbjct: 133 RAELVRRLQEYERFKQAAEDLDALPRMDRDNSAAHAFV-------------PDQTTVRIP 179
Query: 135 P 135
P
Sbjct: 180 P 180
>sp|Q5KU39|VPS41_MOUSE Vacuolar protein sorting-associated protein 41 homolog OS=Mus
musculus GN=Vps41 PE=2 SV=1
Length = 853
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 4 NLIDE---LLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINS 60
N ++E LLS+ NS+ L+ +++E+ ++ K A++F K +D ++ D L+LY+I+
Sbjct: 650 NFVEETVYLLSRMGNSRSALKMIMEELHDVDK---AIEFAKEQDDGELWED-LILYSIDK 705
Query: 61 LYFINLRIKHVDSDFVKVEL-KRIQETMK 88
FI + ++ + + L RI+E M+
Sbjct: 706 PPFITGLLNNIGTHVDPILLIHRIKEGME 734
>sp|P49754|VPS41_HUMAN Vacuolar protein sorting-associated protein 41 homolog OS=Homo
sapiens GN=VPS41 PE=1 SV=3
Length = 854
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 4 NLIDE---LLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINS 60
N ++E LLS+ NS+ L+ +++E+ ++ K A++F K +D ++ D L+LY+I+
Sbjct: 651 NFVEETVYLLSRMGNSRSALKMIMEELHDVDK---AIEFAKEQDDGELWED-LILYSIDK 706
Query: 61 LYFINLRIKHVDSDFVKVEL-KRIQETMK 88
FI + ++ + + L RI+E M+
Sbjct: 707 PPFITGLLNNIGTHVDPILLIHRIKEGME 735
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 19 DLESLV---DEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHV---D 72
+++SLV +EISE KQV T + ++K+ ++DL + YA S+Y I+L IKH
Sbjct: 1365 NIKSLVLKKEEISEKRKQVNKY-ITDIESNKE-QSDLHLRYASRSIYVIDLFIKHEIINP 1422
Query: 73 SDFVKVELKRIQETMKKFKQTKDK 96
SD ++ +++E + K KQ ++
Sbjct: 1423 SDGKNFDIIKVKEMINKTKQVSNE 1446
>sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein MutS OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=mutS PE=3 SV=1
Length = 896
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 21 ESLVDEISEIIKQ---VQAVDFTKLPNDKKIEA-------------------DLLVLYAI 58
E E EI+K+ V FT++PN +K E+ DL + +
Sbjct: 200 EKTYSEYIEILKEKISFLGVKFTEVPNVRKAESYLTSYFDIMSIEVFSLKSKDLAISTSA 259
Query: 59 NSLYFINLRIKHVDSDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDA 107
N L++I+ K + F K+E K I M+ T++ L ++P+ +++A
Sbjct: 260 NLLHYIDELQKGNELPFSKIEYKNIDNIMELNISTQNNLNLVPKRNEEA 308
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Query: 19 DLESLV---DEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHV---D 72
+++SLV +EISE KQV T + ++K+ ++DL + YA S+Y I+L IKH
Sbjct: 1440 NIKSLVLKKEEISEKRKQVNKY-ITDIESNKE-QSDLHLRYASRSIYVIDLFIKHEIINP 1497
Query: 73 SDFVKVELKRIQETMKKFKQ 92
SD ++ +++E + K KQ
Sbjct: 1498 SDGKNFDIIKVKEMINKTKQ 1517
>sp|Q55318|FENR_SYNY3 Ferredoxin--NADP reductase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=petH PE=1 SV=2
Length = 413
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 68 IKHVDSDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDA-------------SKRFVRN 114
I+ S F+ V LKR+ + M++ + K+ + L+ D+ S+
Sbjct: 41 IRRSGSTFITVPLKRMNQEMRRITRMGGKIVSIKPLEGDSPLPHTEGIAKPSQSEGSGSE 100
Query: 115 ALWTP-PESD-----TPCDKKTKDIPPVSKKTKFDADGNVIE 150
A+ P PES+ TP +KK DIP + K G V+E
Sbjct: 101 AVANPAPESNKTMTTTPKEKKADDIPVNIYRPKTPYIGKVLE 142
>sp|Q9D071|MMS19_MOUSE MMS19 nucleotide excision repair protein homolog OS=Mus musculus
GN=Mms19 PE=1 SV=1
Length = 1031
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 1 MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDK-KIEADLLVLYAIN 59
+ ++ +L+SK + L V+E+ E+ +DFT PND I+ + L+L
Sbjct: 193 LAFRIVHDLISK----DYSLGPFVEELFEVTSCYFPIDFTPPPNDPYGIQREDLILSLRA 248
Query: 60 SL--------YFINLRIKHVDSDFVKVELKRIQ 84
L + + L I+ VDS+ + +L +Q
Sbjct: 249 VLASTPRFAEFLLPLLIEKVDSEILSAKLDSLQ 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,747,684
Number of Sequences: 539616
Number of extensions: 2049391
Number of successful extensions: 7758
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 7724
Number of HSP's gapped (non-prelim): 58
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)