Query psy280
Match_columns 156
No_of_seqs 106 out of 195
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:16:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4835|consensus 100.0 2.5E-32 5.5E-37 211.8 9.9 131 7-145 5-141 (144)
2 PF04000 Sas10_Utp3: Sas10/Utp 99.7 7.1E-17 1.5E-21 112.4 9.5 73 17-89 2-85 (85)
3 PF02097 Filo_VP35: Filovirida 70.1 1.4 3.1E-05 38.4 0.0 74 14-87 82-166 (321)
4 cd04243 AAK_AK-HSDH-like AAK_A 64.3 35 0.00076 29.3 7.4 37 38-74 107-143 (293)
5 PF01503 PRA-PH: Phosphoribosy 62.2 14 0.00031 25.5 3.8 29 54-82 50-81 (83)
6 cd04257 AAK_AK-HSDH AAK_AK-HSD 61.9 43 0.00092 28.8 7.4 37 38-74 108-144 (294)
7 KOG4244|consensus 61.4 25 0.00054 30.6 5.8 41 42-82 124-166 (281)
8 cd04258 AAK_AKiii-LysC-EC AAK_ 59.3 86 0.0019 27.0 8.9 51 24-74 88-140 (292)
9 cd04247 AAK_AK-Hom3 AAK_AK-Hom 58.9 1E+02 0.0023 26.7 9.4 36 39-74 117-152 (306)
10 PRK09084 aspartate kinase III; 58.1 86 0.0019 28.4 9.1 50 25-74 87-136 (448)
11 cd04259 AAK_AK-DapDC AAK_AK-Da 56.2 1.2E+02 0.0027 26.0 9.3 36 38-74 102-138 (295)
12 cd04244 AAK_AK-LysC-like AAK_A 55.6 65 0.0014 27.6 7.5 51 23-74 92-145 (298)
13 COG4696 Uncharacterized protei 55.2 1E+02 0.0023 24.9 8.0 75 6-90 50-132 (180)
14 PRK00400 hisE phosphoribosyl-A 52.0 26 0.00057 26.0 4.0 31 54-84 59-92 (105)
15 PF06580 His_kinase: Histidine 51.6 52 0.0011 22.6 5.3 23 69-91 48-71 (82)
16 KOG3117|consensus 51.0 1.2E+02 0.0025 27.1 8.3 85 12-97 13-107 (340)
17 PLN02551 aspartokinase 49.9 1.2E+02 0.0026 28.3 8.8 36 39-74 157-192 (521)
18 COG0140 HisI Phosphoribosyl-AT 49.6 32 0.00068 25.3 4.0 30 54-83 55-87 (92)
19 PF08157 NUC129: NUC129 domain 48.8 16 0.00036 25.0 2.2 23 102-124 13-35 (63)
20 cd04245 AAK_AKiii-YclM-BS AAK_ 48.8 1.7E+02 0.0038 25.0 9.3 33 41-74 106-139 (288)
21 PF11460 DUF3007: Protein of u 48.0 34 0.00074 25.7 4.0 33 19-51 63-99 (104)
22 PF02861 Clp_N: Clp amino term 47.9 38 0.00083 20.5 3.7 34 51-84 17-52 (53)
23 PF12022 DUF3510: Domain of un 46.9 1.1E+02 0.0023 23.0 6.7 50 5-54 67-123 (125)
24 PRK09034 aspartate kinase; Rev 45.1 1.6E+02 0.0034 26.7 8.6 34 40-74 105-139 (454)
25 PRK13694 hypothetical protein; 44.1 1.2E+02 0.0026 21.9 7.5 58 6-71 10-82 (83)
26 KOG2034|consensus 43.3 2E+02 0.0043 29.1 9.4 76 29-113 433-515 (911)
27 PF06419 COG6: Conserved oligo 42.2 1.5E+02 0.0033 28.0 8.3 86 3-93 405-501 (618)
28 COG0781 NusB Transcription ter 41.1 83 0.0018 24.7 5.4 46 9-54 54-100 (151)
29 PRK09181 aspartate kinase; Val 39.7 2.6E+02 0.0057 25.7 9.2 36 39-74 131-166 (475)
30 PF08513 LisH: LisH; InterPro 39.4 29 0.00063 19.4 2.0 15 58-72 3-17 (27)
31 PRK06291 aspartate kinase; Pro 38.6 3E+02 0.0065 24.9 9.4 34 40-74 115-149 (465)
32 PHA02705 hypothetical protein; 36.1 60 0.0013 22.2 3.4 45 75-123 10-54 (72)
33 PF10073 DUF2312: Uncharacteri 34.6 1.7E+02 0.0036 20.7 7.6 55 8-70 4-73 (74)
34 PF10728 DUF2520: Domain of un 33.5 1.8E+02 0.0039 22.0 6.2 45 30-74 15-68 (132)
35 PF13801 Metal_resist: Heavy-m 32.4 1.5E+02 0.0033 20.2 5.3 33 5-37 49-81 (125)
36 PRK02759 bifunctional phosphor 32.4 68 0.0015 26.6 3.9 29 54-82 170-201 (203)
37 PF02037 SAP: SAP domain; Int 32.3 54 0.0012 19.2 2.5 24 64-87 11-35 (35)
38 PF13150 DUF3989: Protein of u 32.0 1.9E+02 0.0041 20.6 6.3 45 26-70 6-52 (85)
39 PF10393 Matrilin_ccoil: Trime 31.5 1.4E+02 0.0031 19.2 4.5 25 6-30 21-45 (47)
40 PF14966 DNA_repr_REX1B: DNA r 31.1 1.4E+02 0.003 21.6 5.0 39 18-56 50-93 (97)
41 COG1283 NptA Na+/phosphate sym 29.0 2.8E+02 0.0062 26.3 7.7 49 11-59 362-411 (533)
42 COG1730 GIM5 Predicted prefold 28.8 1.1E+02 0.0024 24.0 4.3 36 2-37 14-49 (145)
43 PF03670 UPF0184: Uncharacteri 28.4 1.3E+02 0.0029 21.6 4.3 39 11-49 29-67 (83)
44 KOG4835|consensus 28.3 1.2E+02 0.0027 24.0 4.5 114 4-117 9-138 (144)
45 TIGR03188 histidine_hisI phosp 27.6 74 0.0016 22.7 2.9 27 54-80 55-84 (84)
46 PF07033 Orthopox_B11R: Orthop 27.6 1E+02 0.0022 21.2 3.5 46 75-124 9-54 (71)
47 PF10046 BLOC1_2: Biogenesis o 27.0 1.7E+02 0.0036 21.0 4.7 19 15-33 66-84 (99)
48 PF05377 FlaC_arch: Flagella a 26.3 2E+02 0.0044 19.1 5.7 19 17-35 23-41 (55)
49 PF07058 Myosin_HC-like: Myosi 26.2 2E+02 0.0044 25.7 5.9 23 75-97 109-131 (351)
50 TIGR00383 corA magnesium Mg(2+ 25.8 3.9E+02 0.0085 22.3 8.5 28 4-31 138-165 (318)
51 PF00797 Acetyltransf_2: N-ace 25.5 48 0.001 26.6 1.8 21 54-74 48-68 (240)
52 cd02682 MIT_AAA_Arch MIT: doma 25.5 56 0.0012 22.9 1.9 18 80-97 53-70 (75)
53 COG1849 Uncharacterized protei 25.3 1.1E+02 0.0024 22.4 3.5 36 81-117 8-43 (90)
54 PF08650 DASH_Dad4: DASH compl 25.2 1.8E+02 0.0039 20.4 4.4 29 9-37 12-40 (72)
55 cd04790 HTH_Cfa-like_unk Helix 25.1 3.4E+02 0.0073 21.3 9.7 32 2-33 60-99 (172)
56 PF07072 DUF1342: Protein of u 25.0 2E+02 0.0042 23.8 5.4 48 58-112 26-74 (211)
57 cd00412 pyrophosphatase Inorga 24.7 1E+02 0.0022 24.4 3.5 40 77-116 113-154 (155)
58 COG4840 Uncharacterized protei 24.3 2.6E+02 0.0056 19.6 5.1 61 18-84 7-70 (71)
59 PF00143 Interferon: Interfero 23.6 3.6E+02 0.0079 21.1 9.3 28 64-91 127-157 (162)
60 PRK01203 prefoldin subunit alp 23.1 2.1E+02 0.0045 22.1 4.9 34 3-36 9-42 (130)
61 PRK09466 metL bifunctional asp 23.0 4.1E+02 0.009 26.2 8.0 49 26-74 101-149 (810)
62 cd04766 HTH_HspR Helix-Turn-He 22.9 1.8E+02 0.0039 20.0 4.2 30 1-31 59-88 (91)
63 PF02346 Vac_Fusion: Chordopox 22.4 2.5E+02 0.0054 18.8 4.5 33 5-37 12-44 (57)
64 smart00513 SAP Putative DNA-bi 22.4 85 0.0018 18.2 2.1 24 63-86 10-34 (35)
65 PF12128 DUF3584: Protein of u 22.3 4.8E+02 0.01 26.7 8.5 34 62-95 759-802 (1201)
66 cd02681 MIT_calpain7_1 MIT: do 22.3 2.2E+02 0.0047 19.8 4.4 18 80-97 54-71 (76)
67 cd02646 R3H_G-patch R3H domain 22.3 79 0.0017 20.5 2.1 34 25-58 2-41 (58)
68 KOG0506|consensus 22.3 1.4E+02 0.0029 28.5 4.3 51 62-118 108-162 (622)
69 PF00698 Acyl_transf_1: Acyl t 21.7 2E+02 0.0044 24.1 5.0 55 20-74 25-86 (318)
70 PF12841 YvrJ: YvrJ protein fa 21.5 1.4E+02 0.003 18.4 2.9 18 12-29 19-36 (38)
71 COG1955 FlaJ Archaeal flagella 21.0 7.3E+02 0.016 23.7 9.4 58 3-61 296-354 (527)
72 PF08385 DHC_N1: Dynein heavy 20.6 5.7E+02 0.012 23.0 7.9 30 11-40 294-323 (579)
73 PF00502 Phycobilisome: Phycob 20.4 3E+02 0.0065 21.2 5.4 49 6-61 108-156 (157)
74 COG5637 Predicted integral mem 20.4 1.6E+02 0.0034 24.7 3.8 28 62-89 182-210 (217)
75 PF13817 DDE_Tnp_IS66_C: IS66 20.4 90 0.0019 19.1 1.9 21 65-85 5-26 (39)
76 PRK10925 superoxide dismutase; 20.0 2.9E+02 0.0063 22.5 5.4 30 51-81 74-104 (206)
77 PF13618 Gluconate_2-dh3: Gluc 20.0 3.5E+02 0.0076 19.5 6.6 51 18-68 47-107 (131)
No 1
>KOG4835|consensus
Probab=99.98 E-value=2.5e-32 Score=211.78 Aligned_cols=131 Identities=31% Similarity=0.519 Sum_probs=111.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch--hHHHHH
Q psy280 7 DELLSKFINSQHDLESLVDEISEIIKQVQAV----DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD--FVKVEL 80 (156)
Q Consensus 7 ~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~----~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~--pI~~EL 80 (156)
++++.+.++.|..|...|++|++.|+.+.+. ....+. +||||++++++|+++||||+||+++|+||+ |||+||
T Consensus 5 ~~~p~~l~e~ln~f~~~l~~l~~~le~~~s~~e~e~l~sl~-~EqAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~EL 83 (144)
T KOG4835|consen 5 DPEPESLIEYLNKFLDNLEELKPPLEDMESISELEELRSLL-LEQAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQEL 83 (144)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHH
Confidence 3455566666666688888898888888887 333455 899999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhhcccCCCccccHHHHHHHHHhhCCCCCCCCCCcCCCCCCCCCCCCCcccCCC
Q psy280 81 KRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTPCDKKTKDIPPVSKKTKFDAD 145 (156)
Q Consensus 81 ~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI~~aL~~~~~~~~~~~~~~~~~~~~~k~~kf~~~ 145 (156)
+|||.||.|+|++.++. ..|++|++||+|||+|+||+.+...+.. .....||.||..+
T Consensus 84 ~Rvk~y~~k~Kqi~d~~-~a~~l~~~aA~rfI~n~l~~~~~~~~s~------~~~~~K~~ks~~~ 141 (144)
T KOG4835|consen 84 ERVKVYMAKIKQINDRV-KAPRLNRQAAKRFISNSLWNQPEVAKSS------ATRIKKHHKSEND 141 (144)
T ss_pred HHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHhhcccCcchhHHH------HHHHHhccccccc
Confidence 99999999999999999 7999999999999999999988776432 3456677777765
No 2
>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []. It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].
Probab=99.71 E-value=7.1e-17 Score=112.35 Aligned_cols=73 Identities=27% Similarity=0.409 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHH
Q psy280 17 QHDLESLVDEISEIIKQVQAVD----FTKLPN-----DKKIEADLLVLYAINSLYFINLRIKHVDSD--FVKVELKRIQE 85 (156)
Q Consensus 17 l~~l~~sl~~Le~~L~~ll~~~----~~~lsp-----le~akl~l~laY~lnSL~~~yLKt~Gvdp~--pI~~EL~RVK~ 85 (156)
+++|.++++++++.+++++... .+.+++ ++++|.+++++|+.|++||+|||++|+++. ||++||.|+|.
T Consensus 2 l~~l~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~~~~~lk~~g~~~~~hpv~~~L~r~r~ 81 (85)
T PF04000_consen 2 LKELSESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLLFYMYLKLSGVDPKDHPVMKELVRIRQ 81 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 5677999999999999999773 578898 999999999999999999999999999999 99999999999
Q ss_pred HHHH
Q psy280 86 TMKK 89 (156)
Q Consensus 86 Ym~K 89 (156)
||+|
T Consensus 82 ~leK 85 (85)
T PF04000_consen 82 YLEK 85 (85)
T ss_pred HHcC
Confidence 9986
No 3
>PF02097 Filo_VP35: Filoviridae VP35; InterPro: IPR002953 The filoviridae are a group of viruses that cause haemorrhagic fevers with a high mortality rate. The family currently contains three viruses: Ebola virus sp., Lake Victoria marburgvirus and Reston ebolavirus, named after their corresponding outbreak regions. They possess negative-stranded RNA genomes, which encode at least 7 proteins. The VP35 protein is found in the genomes of all filoviruses. Its function is presently unknown, but it is thought to share the function of the phosphorylated proteins (polymerase subunits) of rhabdoviruses and paramyxoviruses due to its position in the genome. There is no evidence however, to suggest that VP35 is phosphorylated [].; PDB: 3KS8_D 3L2A_A 3KS4_A 3L28_E 3L25_D 3FKE_B 3L26_A 3L27_D 3L29_B.
Probab=70.08 E-value=1.4 Score=38.38 Aligned_cols=74 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH-----hhcCCChHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCch-hHHHHHHH
Q psy280 14 INSQHDLESLVDEISEIIKQVQAV-----DFTKLPNDKKIEADLLV-----LYAINSLYFINLRIKHVDSD-FVKVELKR 82 (156)
Q Consensus 14 ~~~l~~l~~sl~~Le~~L~~ll~~-----~~~~lsple~akl~l~l-----aY~lnSL~~~yLKt~Gvdp~-pI~~EL~R 82 (156)
....+.|++.|.+||..|+|+++- .+......=-||+|++. |-+...-+-+|.+-.|..|- |+.-|.+|
T Consensus 82 ~~~~e~L~~~l~~ie~~Lqpv~~M~~~i~~L~~~~sEmvAKyd~LvmttGrATaTaaA~~Ay~~EHg~pPPGP~L~~~~~ 161 (321)
T PF02097_consen 82 IVTMESLEARLTEIEAQLQPVLSMSKTISSLNRSCSEMVAKYDLLVMTTGRATATAAATEAYWQEHGRPPPGPALYEEEA 161 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHhceeeeecCCcchhHHHhhhhHHhcCCCCCCcchhhhhh
Confidence 345677889999999999999887 33445566678888776 34444456689999999999 99999999
Q ss_pred HHHHH
Q psy280 83 IQETM 87 (156)
Q Consensus 83 VK~Ym 87 (156)
++.-.
T Consensus 162 ~~ar~ 166 (321)
T PF02097_consen 162 HGARI 166 (321)
T ss_dssp -----
T ss_pred hhccc
Confidence 98654
No 4
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=64.31 E-value=35 Score=29.26 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=26.2
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 38 DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 38 ~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
.+..+++..++.+-..-=+.-..|+-.||+.+|++..
T Consensus 107 ~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~ 143 (293)
T cd04243 107 LLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAA 143 (293)
T ss_pred hhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcE
Confidence 3456778777766555455566677899999998666
No 5
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=62.23 E-value=14 Score=25.49 Aligned_cols=29 Identities=28% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVELKR 82 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL~R 82 (156)
+++.+..|+| .++...|++|++|.+|+.|
T Consensus 50 ~~~e~aDlly~~~~~~~~~gi~~~~v~~ev~~ 81 (83)
T PF01503_consen 50 VADELADLLYHLLGLLASMGIDLDEVFDEVHR 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3555566555 5667799999999999987
No 6
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=61.90 E-value=43 Score=28.76 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=25.1
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 38 DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 38 ~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
.+..+++..++.+-..-=..-..|+-.||+.+|++..
T Consensus 108 ~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~ 144 (294)
T cd04257 108 LLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAA 144 (294)
T ss_pred hhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeE
Confidence 3457788777665444334455567789999998766
No 7
>KOG4244|consensus
Probab=61.37 E-value=25 Score=30.62 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch--hHHHHHHH
Q psy280 42 LPNDKKIEADLLVLYAINSLYFINLRIKHVDSD--FVKVELKR 82 (156)
Q Consensus 42 lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~--pI~~EL~R 82 (156)
|++.|+|.---..+-+=|+|+|+-++.+|+|+. ..+..+-+
T Consensus 124 L~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~ 166 (281)
T KOG4244|consen 124 LSAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIG 166 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccC
Confidence 999999999999999999999999999999986 44444443
No 8
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=59.30 E-value=86 Score=26.97 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHH--hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 24 VDEISEIIKQVQAV--DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 24 l~~Le~~L~~ll~~--~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
|+..-+.|+.++.. ....+++..+..+-..--..-..|+-.||+.+|++..
T Consensus 88 i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~ 140 (292)
T cd04258 88 LEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAE 140 (292)
T ss_pred HHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeE
Confidence 33333334444433 3345677666444333334455567789999999777
No 9
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=58.93 E-value=1e+02 Score=26.70 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=22.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 39 FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 39 ~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
+..+++..++.+-..-=..-..|+-.||+.+|++..
T Consensus 117 l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~ 152 (306)
T cd04247 117 LSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAE 152 (306)
T ss_pred hhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeE
Confidence 356677665444333233345577789999999877
No 10
>PRK09084 aspartate kinase III; Validated
Probab=58.08 E-value=86 Score=28.36 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 25 DEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 25 ~~Le~~L~~ll~~~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
...-..|+.++......+++.+++.+-..-=+.-..|+-.||+.+|++..
T Consensus 87 ~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~ 136 (448)
T PRK09084 87 ERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAE 136 (448)
T ss_pred HHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcE
Confidence 33333333344332225666666555444445566788899999999855
No 11
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=56.23 E-value=1.2e+02 Score=25.95 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=22.8
Q ss_pred hhcCCChHHHHHHHHHHHHHH-HHHHHHHHHhcCCCch
Q psy280 38 DFTKLPNDKKIEADLLVLYAI-NSLYFINLRIKHVDSD 74 (156)
Q Consensus 38 ~~~~lsple~akl~l~laY~l-nSL~~~yLKt~Gvdp~ 74 (156)
.+..+++..++.+-. ....+ ..|+-.||+..|++..
T Consensus 102 ~~~~~~~~~~d~i~s-~GE~lSa~lla~~L~~~Gi~a~ 138 (295)
T cd04259 102 LLKQASPRTRAEVLA-LGELMSTRLGAAYLEAQGLKVK 138 (295)
T ss_pred hhccCCHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCeE
Confidence 345677766644443 33344 4466789999998766
No 12
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=55.65 E-value=65 Score=27.62 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHH--hhcCCChHHHHHHHHHHHHHHHH-HHHHHHHhcCCCch
Q psy280 23 LVDEISEIIKQVQAV--DFTKLPNDKKIEADLLVLYAINS-LYFINLRIKHVDSD 74 (156)
Q Consensus 23 sl~~Le~~L~~ll~~--~~~~lsple~akl~l~laY~lnS-L~~~yLKt~Gvdp~ 74 (156)
.|...-+.|+.++.. ....+++..++.+ ++....+++ |+-.||+.+|++..
T Consensus 92 ~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i-~s~GE~lSa~lla~~L~~~Gi~a~ 145 (298)
T cd04244 92 IIDSLLEELEKLLYGIAYLGELTPRSRDYI-VSFGERLSAPIFSAALRSLGIKAR 145 (298)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCchHhhHh-ccHhHHHHHHHHHHHHHhCCCCeE
Confidence 333333444444443 3446777666544 333445554 56688999998665
No 13
>COG4696 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.21 E-value=1e+02 Score=24.86 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----c--CCChHHHHHHHHHHHHHHHHHHHHH--HHhcCCCchhHH
Q psy280 6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVDF----T--KLPNDKKIEADLLVLYAINSLYFIN--LRIKHVDSDFVK 77 (156)
Q Consensus 6 i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~~~----~--~lsple~akl~l~laY~lnSL~~~y--LKt~Gvdp~pI~ 77 (156)
|-||+-+-...-++|-+.+..+-.+++...++.+ . .|.+.--|-.|+ |||.| |-..||||++|.
T Consensus 50 ivEf~yaas~g~q~ftqav~~lH~a~dqAA~kv~~k~h~e~dL~gqvdalaDl--------LYfTYGslvlmGiDp~~iF 121 (180)
T COG4696 50 IVEFLYAASPGEQDFTQAVEILHQAVDQAANKVLSKGHAEQDLIGQVDALADL--------LYFTYGSLVLMGIDPDAIF 121 (180)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHH--------HHHhhhhHHHhcCCHHHHH
Confidence 4455533344455567777777766666655522 2 333333333332 34444 566899999999
Q ss_pred HHHHHHHHHHHHH
Q psy280 78 VELKRIQETMKKF 90 (156)
Q Consensus 78 ~EL~RVK~Ym~Ki 90 (156)
.+.-|-. |.||
T Consensus 122 ~~VHrAN--m~Ki 132 (180)
T COG4696 122 AAVHRAN--MGKI 132 (180)
T ss_pred HHHHHhh--hhhc
Confidence 9887743 5554
No 14
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=51.97 E-value=26 Score=26.03 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=24.4
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVELKRIQ 84 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL~RVK 84 (156)
+.|=...|+| +.|...||+++.|.+||.|=.
T Consensus 59 ~i~E~ADLlYHllVlL~~~gv~~~dV~~eL~~R~ 92 (105)
T PRK00400 59 LVYEIADLLYHLLVLLAARGISLEDVLAELERRE 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHc
Confidence 4555666665 778899999999999998754
No 15
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=51.62 E-value=52 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=17.5
Q ss_pred cCCCch-hHHHHHHHHHHHHHHHH
Q psy280 69 KHVDSD-FVKVELKRIQETMKKFK 91 (156)
Q Consensus 69 ~Gvdp~-pI~~EL~RVK~Ym~KiK 91 (156)
.+.+.. |+..||+-|+.|+.=.+
T Consensus 48 ~~~~~~v~l~~El~~i~~Yl~i~~ 71 (82)
T PF06580_consen 48 SSKEEFVTLEEELEFIENYLEIQK 71 (82)
T ss_pred CCCCCeeeHHHHHHHHHHHHHHHH
Confidence 344444 99999999999987443
No 16
>KOG3117|consensus
Probab=50.98 E-value=1.2e+02 Score=27.06 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH-------hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cch-hHHHHHH
Q psy280 12 KFINSQHDLESLVDEISEIIKQVQAV-------DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHV--DSD-FVKVELK 81 (156)
Q Consensus 12 ~f~~~l~~l~~sl~~Le~~L~~ll~~-------~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gv--dp~-pI~~EL~ 81 (156)
+|..-+..++.+.+.+-..+..++.. ..+.+|.+ ..|=+++++|...=+|.|.-+..|. ++. +.-.=|-
T Consensus 13 s~~~L~~~l~~q~~~~~k~~~~l~e~l~~ta~~~e~gvSlL-sLKnqlll~Yl~~Lt~Lil~klddes~~~h~daveRlv 91 (340)
T KOG3117|consen 13 SLERLSGILSNQMDVLNKSIQTLLEALPKTASSSEDGVSLL-SLKNQLLLSYLQKLTFLILVKLDDESFLQHQDAVERLV 91 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccCceee-eechHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 45555555666666666666666665 22244443 3466788999888888888888885 333 4444444
Q ss_pred HHHHHHHHHHhhhccc
Q psy280 82 RIQETMKKFKQTKDKL 97 (156)
Q Consensus 82 RVK~Ym~KiK~~e~~~ 97 (156)
-++-..+|++-++++.
T Consensus 92 qhRvvlEKirPLE~Kl 107 (340)
T KOG3117|consen 92 QHRVVLEKIRPLENKL 107 (340)
T ss_pred HHHHHHHhcccHHHHH
Confidence 4555555555555544
No 17
>PLN02551 aspartokinase
Probab=49.94 E-value=1.2e+02 Score=28.25 Aligned_cols=36 Identities=8% Similarity=-0.047 Sum_probs=23.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 39 FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 39 ~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
...+++..+..+-..-=..-..|+-.||+.+|++..
T Consensus 157 ~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~ 192 (521)
T PLN02551 157 MKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKAR 192 (521)
T ss_pred hcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcE
Confidence 356777665444333333456678899999998766
No 18
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=49.60 E-value=32 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.0
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVELKRI 83 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL~RV 83 (156)
++|=+..|+| +.|..+|++++.|.+||+|=
T Consensus 55 l~~E~ADLlYH~lVlL~~~gv~l~dV~~eL~~R 87 (92)
T COG0140 55 LVSEAADLLYHLLVLLAAQGLSLEDVLRELERR 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5666666666 66788999999999999974
No 19
>PF08157 NUC129: NUC129 domain; InterPro: IPR012579 This C-terminal domain is found in a novel family of hypothetical nucleolar proteins [].; GO: 0005634 nucleus
Probab=48.79 E-value=16 Score=24.99 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHhhCCCCCCCCC
Q psy280 102 RLDKDASKRFVRNALWTPPESDT 124 (156)
Q Consensus 102 ~ld~~AAkRfI~~aL~~~~~~~~ 124 (156)
-..++||+.||++.|.+|.....
T Consensus 13 ~~~QqaAk~Fi~~~LYGpgsnRT 35 (63)
T PF08157_consen 13 DSQQQAAKDFIQSRLYGPGSNRT 35 (63)
T ss_pred hHHHHHHHHHHHHhccCCCCCcc
Confidence 35689999999999999877654
No 20
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=48.76 E-value=1.7e+02 Score=25.04 Aligned_cols=33 Identities=15% Similarity=-0.067 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHHHHHHHHHH-HHHHHHhcCCCch
Q psy280 41 KLPNDKKIEADLLVLYAINSL-YFINLRIKHVDSD 74 (156)
Q Consensus 41 ~lsple~akl~l~laY~lnSL-~~~yLKt~Gvdp~ 74 (156)
.+++..+. .-++....++++ +-.||+.+|++..
T Consensus 106 ~~~~~~~d-~i~s~GE~lSa~ll~~~L~~~Gi~a~ 139 (288)
T cd04245 106 ANPDYLLD-ALKARGEYLNAQLMAAYLNYQGIDAR 139 (288)
T ss_pred cCCHHHHH-HHHHHhHHHHHHHHHHHHHHCCCCeE
Confidence 35566665 344455666664 5578999998766
No 21
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=48.01 E-value=34 Score=25.65 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhcCCChHHHHHHH
Q psy280 19 DLESLVDEISEIIKQVQAV----DFTKLPNDKKIEAD 51 (156)
Q Consensus 19 ~l~~sl~~Le~~L~~ll~~----~~~~lsple~akl~ 51 (156)
++.+++.+.|++.+.+... .++.|||.|+++|.
T Consensus 63 Ty~~Q~k~Ye~a~~~~~~~~lqkRle~l~~eE~~~L~ 99 (104)
T PF11460_consen 63 TYMQQRKDYEEAVDQLTNEELQKRLEELSPEELEALQ 99 (104)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 3455555666655555444 78899999999875
No 22
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=47.93 E-value=38 Score=20.48 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=25.3
Q ss_pred HHHHHHHHH--HHHHHHHHhcCCCchhHHHHHHHHH
Q psy280 51 DLLVLYAIN--SLYFINLRIKHVDSDFVKVELKRIQ 84 (156)
Q Consensus 51 ~l~laY~ln--SL~~~yLKt~Gvdp~pI~~EL~RVK 84 (156)
++++|..-+ +.+.-.|+..|+|++.+..+++++.
T Consensus 17 HlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 17 HLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344444443 4888999999999998888888763
No 23
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=46.87 E-value=1.1e+02 Score=23.02 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------hhcCCChHHHHHHHHHH
Q psy280 5 LIDELLSKFINSQHDLESLVDEISEIIKQVQAV-------DFTKLPNDKKIEADLLV 54 (156)
Q Consensus 5 ~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~-------~~~~lsple~akl~l~l 54 (156)
.+.++...|...+.++-.++.+.|+.|+.|-.. ..+.++..|++++++.+
T Consensus 67 v~~~v~~~y~~~~~evL~sv~KtEeSL~rlkk~~~~~~~~~~~~~sD~dKIr~QL~L 123 (125)
T PF12022_consen 67 VITEVTERYYEIASEVLTSVRKTEESLKRLKKRRKRTSGSSSGGMSDDDKIRLQLYL 123 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcHHHHHHHHHc
Confidence 345555677777888888888888888887776 12478899999998864
No 24
>PRK09034 aspartate kinase; Reviewed
Probab=45.12 E-value=1.6e+02 Score=26.70 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=20.7
Q ss_pred cCCChHHHHHHHHHHHHHHH-HHHHHHHHhcCCCch
Q psy280 40 TKLPNDKKIEADLLVLYAIN-SLYFINLRIKHVDSD 74 (156)
Q Consensus 40 ~~lsple~akl~l~laY~ln-SL~~~yLKt~Gvdp~ 74 (156)
...++.++..+ ++....++ .|+-.||+.+|++..
T Consensus 105 ~~~~~~~~d~l-~s~GE~~S~~l~a~~L~~~g~~a~ 139 (454)
T PRK09034 105 SRNPDRLLDAF-KARGEDLNAKLIAAYLNYEGIPAR 139 (454)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcE
Confidence 34566555422 33344444 456688999998777
No 25
>PRK13694 hypothetical protein; Provisional
Probab=44.14 E-value=1.2e+02 Score=21.90 Aligned_cols=58 Identities=26% Similarity=0.306 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------------hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy280 6 IDELLSKFINSQHDLESLVDEISEIIKQVQAV---------------DFTKLPNDKKIEADLLVLYAINSLYFINLRIKH 70 (156)
Q Consensus 6 i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~---------------~~~~lsple~akl~l~laY~lnSL~~~yLKt~G 70 (156)
..+=|..||+-++.|++--..|.+.++.+... .+-++.+.+++.-. +++-+|+...|
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~~er~E~E--------aiLe~Y~~ALG 81 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDDDERAEEE--------AILDLYMDALG 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCHhHHHHHH--------HHHHHHHHHhC
Confidence 34567889999999999999999999988776 34578888888865 55667777777
Q ss_pred C
Q psy280 71 V 71 (156)
Q Consensus 71 v 71 (156)
.
T Consensus 82 m 82 (83)
T PRK13694 82 M 82 (83)
T ss_pred C
Confidence 4
No 26
>KOG2034|consensus
Probab=43.26 E-value=2e+02 Score=29.11 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC----Cch---hHHHHHHHHHHHHHHHHhhhcccCCCc
Q psy280 29 EIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHV----DSD---FVKVELKRIQETMKKFKQTKDKLTIMP 101 (156)
Q Consensus 29 ~~L~~ll~~~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gv----dp~---pI~~EL~RVK~Ym~KiK~~e~~~~~~p 101 (156)
+.|..++.+.++.++|.++.+.+..+.+ |.|.||.-.|. |++ ..+.+.+-+..+|.+.-......
T Consensus 433 ~~L~~~L~KKL~~lt~~dk~q~~~Lv~W----Llel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~---- 504 (911)
T KOG2034|consen 433 RALRTFLDKKLDRLTPEDKTQRDALVTW----LLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDE---- 504 (911)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHH----HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHh----
Confidence 4677777778899999999999976665 56888887663 344 78888888888887766554433
Q ss_pred cccHHHHHHHHH
Q psy280 102 RLDKDASKRFVR 113 (156)
Q Consensus 102 ~ld~~AAkRfI~ 113 (156)
+|.+++-+.+.
T Consensus 505 -~nretv~~l~~ 515 (911)
T KOG2034|consen 505 -LNRETVYQLLA 515 (911)
T ss_pred -hhHHHHHHHHH
Confidence 55555554443
No 27
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=42.19 E-value=1.5e+02 Score=28.05 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHhHHHHHHHH--HH----HHHHHHHHHHH---hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy280 3 LNLIDELLSKFINSQHDLESLV--DE----ISEIIKQVQAV---DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDS 73 (156)
Q Consensus 3 ~~~i~~~~~~f~~~l~~l~~sl--~~----Le~~L~~ll~~---~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp 73 (156)
++.+.++++.+-.++...+..- .. |...|+|++.. ....|++.+. ...|.+|.|..++=+....+-
T Consensus 405 l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~-----~~if~iNCl~~i~s~L~~~~~ 479 (618)
T PF06419_consen 405 LSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLAPKDD-----RAIFMINCLDLIQSTLSPFEF 479 (618)
T ss_pred HHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhh-----hHHHHHHhHHHHHHHccChHh
Confidence 3445555555544443331111 22 23345555555 4445666665 678999999999888888765
Q ss_pred h-hHHHHHH-HHHHHHHHHHhh
Q psy280 74 D-FVKVELK-RIQETMKKFKQT 93 (156)
Q Consensus 74 ~-pI~~EL~-RVK~Ym~KiK~~ 93 (156)
. ....+|+ .+..+++.+-+.
T Consensus 480 ~~~~~e~L~~~id~~~~~Lv~~ 501 (618)
T PF06419_consen 480 TSERVEELQDQIDAHVDTLVEE 501 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4444443 344455544443
No 28
>COG0781 NusB Transcription termination factor [Transcription]
Probab=41.06 E-value=83 Score=24.68 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hhcCCChHHHHHHHHHH
Q psy280 9 LLSKFINSQHDLESLVDEISEIIKQVQAV-DFTKLPNDKKIEADLLV 54 (156)
Q Consensus 9 ~~~~f~~~l~~l~~sl~~Le~~L~~ll~~-~~~~lsple~akl~l~l 54 (156)
....|..-+.......++|+..+.|.+.. ..+.|++.|||=|-+++
T Consensus 54 ~~~~~~~lv~gv~~~~~~iD~~I~~~L~~w~~~rL~~verAILRla~ 100 (151)
T COG0781 54 DSEYFRSLVKGVLENQEELDELISPHLKKWSLERLDLVERAILRLAL 100 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHhhHHHHHHHHHHH
Confidence 34455556777788888999999999987 89999999999887764
No 29
>PRK09181 aspartate kinase; Validated
Probab=39.69 E-value=2.6e+02 Score=25.73 Aligned_cols=36 Identities=6% Similarity=-0.177 Sum_probs=21.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 39 FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 39 ~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
+...+|-.+..+-..-=..-..|+-+||+.+|++..
T Consensus 131 l~e~~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~ 166 (475)
T PRK09181 131 LDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNAR 166 (475)
T ss_pred hhccChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeE
Confidence 345566555322222223355678899999998765
No 30
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=39.40 E-value=29 Score=19.39 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCC
Q psy280 58 INSLYFINLRIKHVD 72 (156)
Q Consensus 58 lnSL~~~yLKt~Gvd 72 (156)
+|.|+|-||.-.|-.
T Consensus 3 Ln~lI~~YL~~~Gy~ 17 (27)
T PF08513_consen 3 LNQLIYDYLVENGYK 17 (27)
T ss_dssp HHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHCCcH
Confidence 789999999999954
No 31
>PRK06291 aspartate kinase; Provisional
Probab=38.63 E-value=3e+02 Score=24.90 Aligned_cols=34 Identities=15% Similarity=-0.033 Sum_probs=20.8
Q ss_pred cCCChHHHHHHHHHHHHHHH-HHHHHHHHhcCCCch
Q psy280 40 TKLPNDKKIEADLLVLYAIN-SLYFINLRIKHVDSD 74 (156)
Q Consensus 40 ~~lsple~akl~l~laY~ln-SL~~~yLKt~Gvdp~ 74 (156)
..+++..+..+ ++....++ .|+-.||+..|++..
T Consensus 115 ~~~~~~~~d~i-~s~GE~~Sa~l~~~~L~~~Gi~a~ 149 (465)
T PRK06291 115 GELTPRSRDYI-LSFGERLSAPILSGALRDLGIKSV 149 (465)
T ss_pred ccCChHHHHHH-HhhhHHHHHHHHHHHHHhCCCCeE
Confidence 35566555433 33344444 466789999998776
No 32
>PHA02705 hypothetical protein; Provisional
Probab=36.05 E-value=60 Score=22.19 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCCCccccHHHHHHHHHhhCCCCCCCC
Q psy280 75 FVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESD 123 (156)
Q Consensus 75 pI~~EL~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI~~aL~~~~~~~ 123 (156)
.||.|++|-|.-+-|--+.+... .+++.--..+|+.+|--+..+.
T Consensus 10 dimneidrekeeilknvemennk----ninknhpskyirealvintssn 54 (72)
T PHA02705 10 DIMNEIDREKEEILKNVEMENNK----NINKNHPSKYIREALVINTSSN 54 (72)
T ss_pred HHHHHHHHHHHHHHHhhhhhccc----cccccCcHHHHHHHHheecCCC
Confidence 89999999998877766666554 4666666789999987665554
No 33
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.61 E-value=1.7e+02 Score=20.70 Aligned_cols=55 Identities=27% Similarity=0.283 Sum_probs=42.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------------hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy280 8 ELLSKFINSQHDLESLVDEISEIIKQVQAV---------------DFTKLPNDKKIEADLLVLYAINSLYFINLRIKH 70 (156)
Q Consensus 8 ~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~---------------~~~~lsple~akl~l~laY~lnSL~~~yLKt~G 70 (156)
+-|..|++.++.|++-...|.+.++.+... .+.++.+.++..-+. ++-.|+...|
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~~~r~E~ea--------il~~Y~~ALG 73 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKDPDEREEEEA--------ILDLYMSALG 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCHhHHHHHHH--------HHHHHHHHhC
Confidence 346789999999999999999999888776 345788888888764 4456666666
No 34
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=33.53 E-value=1.8e+02 Score=21.98 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHH---hhcCCChHHHHHHHHHHHHHHHHHHH------HHHHhcCCCch
Q psy280 30 IIKQVQAV---DFTKLPNDKKIEADLLVLYAINSLYF------INLRIKHVDSD 74 (156)
Q Consensus 30 ~L~~ll~~---~~~~lsple~akl~l~laY~lnSL~~------~yLKt~Gvdp~ 74 (156)
.++.|... ..-.+++.+|+.++.+..++-|=+.. -+|...|++..
T Consensus 15 ~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~ 68 (132)
T PF10728_consen 15 VLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFE 68 (132)
T ss_dssp HHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHH
T ss_pred HHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCch
Confidence 34444444 44478999999999999877664443 45777899984
No 35
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=32.38 E-value=1.5e+02 Score=20.25 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 5 LIDELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 5 ~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
-|+.....|......+...+......|..++..
T Consensus 49 ~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~ 81 (125)
T PF13801_consen 49 KLRALMDEFRQEMRALRQELRAARQELRALLAA 81 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356666777777777777777766666665544
No 36
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=32.35 E-value=68 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.6
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVELKR 82 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL~R 82 (156)
++|=...|+| +.|...|++++.|.+||.|
T Consensus 170 li~E~ADLlYHllVlL~~~gv~l~dV~~eL~~ 201 (203)
T PRK02759 170 LINEAADLLYHLLVLLADQGLSLSDVIAELKE 201 (203)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5677777777 7788999999999999987
No 37
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.30 E-value=54 Score=19.24 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=16.6
Q ss_pred HHHHhcCCCchhHHHHH-HHHHHHH
Q psy280 64 INLRIKHVDSDFVKVEL-KRIQETM 87 (156)
Q Consensus 64 ~yLKt~Gvdp~pI~~EL-~RVK~Ym 87 (156)
-+|+..|.++.+-+.|| +|++.|+
T Consensus 11 ~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 11 EELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 46788888888667776 5777764
No 38
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=32.05 E-value=1.9e+02 Score=20.63 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHH--HHHHHHHHHHHHHhcC
Q psy280 26 EISEIIKQVQAVDFTKLPNDKKIEADLLV--LYAINSLYFINLRIKH 70 (156)
Q Consensus 26 ~Le~~L~~ll~~~~~~lsple~akl~l~l--aY~lnSL~~~yLKt~G 70 (156)
.+.+.++.=|......|||..|..+-+.+ .|++-|||+..=-..|
T Consensus 6 ~~~~~~~~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~~ai~~ 52 (85)
T PF13150_consen 6 KIKDRADDRLRRYCGRLSPKQRLRVVLVMLVLFAALCLYMTVSAIYD 52 (85)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444468899999998876665 7777777765443333
No 39
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=31.54 E-value=1.4e+02 Score=19.18 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH
Q psy280 6 IDELLSKFINSQHDLESLVDEISEI 30 (156)
Q Consensus 6 i~~~~~~f~~~l~~l~~sl~~Le~~ 30 (156)
+...++.+-.+|+.+...|+.||..
T Consensus 21 v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 21 VTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555543
No 40
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=31.08 E-value=1.4e+02 Score=21.65 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHhhcCCChHHHHHHHHHHHH
Q psy280 18 HDLESLVDEISEIIK-----QVQAVDFTKLPNDKKIEADLLVLY 56 (156)
Q Consensus 18 ~~l~~sl~~Le~~L~-----~ll~~~~~~lsple~akl~l~laY 56 (156)
.+....|-.++..|. |-++..+..+-..|+.||.+..++
T Consensus 50 ~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~KL~lT~~l 93 (97)
T PF14966_consen 50 SAISKEILAIEAELRDEHERPDLAELIRELQEQEKEKLELTAKL 93 (97)
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888886 666667778888999999988764
No 41
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=28.96 E-value=2.8e+02 Score=26.28 Aligned_cols=49 Identities=27% Similarity=0.215 Sum_probs=41.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHH
Q psy280 11 SKFINSQHDLESLVDEISEIIKQVQAV-DFTKLPNDKKIEADLLVLYAIN 59 (156)
Q Consensus 11 ~~f~~~l~~l~~sl~~Le~~L~~ll~~-~~~~lsple~akl~l~laY~ln 59 (156)
...+..+.++++.++.+...++..+.. ....|+..|--+...++-|+.|
T Consensus 362 ~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~ 411 (533)
T COG1283 362 AKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAIN 411 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 356778889999999999999998888 7779999999998888887765
No 42
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=1.1e+02 Score=24.03 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=28.3
Q ss_pred chhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 2 TLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 2 ~~~~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
.++.+...++.+...+..++.++.+++.+++.+-..
T Consensus 14 ~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~l 49 (145)
T COG1730 14 QLQILQSQIESLQAQIAALNAAISELQTAIETLENL 49 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888887776665
No 43
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=28.39 E-value=1.3e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q psy280 11 SKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIE 49 (156)
Q Consensus 11 ~~f~~~l~~l~~sl~~Le~~L~~ll~~~~~~lsple~ak 49 (156)
...-..|+.++.+|+.||.--+.|......-|....+++
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R 67 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIR 67 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344556666677777776666555555333333333333
No 44
>KOG4835|consensus
Probab=28.35 E-value=1.2e+02 Score=23.95 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hhcCCChH--HHHHHHHHHHHHHHHHHHHHHHhcCCCch--hHHH
Q psy280 4 NLIDELLSKFINSQHDLESLVDEISEIIKQVQAV-DFTKLPND--KKIEADLLVLYAINSLYFINLRIKHVDSD--FVKV 78 (156)
Q Consensus 4 ~~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~-~~~~lspl--e~akl~l~laY~lnSL~~~yLKt~Gvdp~--pI~~ 78 (156)
..|+|+++.|...++.++..|.+++...++-... ...+.--+ =-+-+.+++-|+.--+=-.=-+-.-|--+ -|+.
T Consensus 9 ~~l~e~ln~f~~~l~~l~~~le~~~s~~e~e~l~sl~~EqAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~EL~Rvk~ 88 (144)
T KOG4835|consen 9 ESLIEYLNKFLDNLEELKPPLEDMESISELEELRSLLLEQAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQELERVKV 88 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHH
Confidence 4789999999999999999999999887764444 11122111 22333444444433332221122222223 7888
Q ss_pred HHHHHHHHHHHHHhhhc-c----------cCCCccccHHHHHHHHHhhCC
Q psy280 79 ELKRIQETMKKFKQTKD-K----------LTIMPRLDKDASKRFVRNALW 117 (156)
Q Consensus 79 EL~RVK~Ym~KiK~~e~-~----------~~~~p~ld~~AAkRfI~~aL~ 117 (156)
=++|+|+|-++++.-.. + ...+|.....++.+..+|.=.
T Consensus 89 y~~k~Kqi~d~~~a~~l~~~aA~rfI~n~l~~~~~~~~s~~~~~~K~~ks 138 (144)
T KOG4835|consen 89 YMAKIKQINDRVKAPRLNRQAAKRFISNSLWNQPEVAKSSATRIKKHHKS 138 (144)
T ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHhhcccCcchhHHHHHHHHhcccc
Confidence 89999999998874322 1 124778888888888777543
No 45
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=27.58 E-value=74 Score=22.68 Aligned_cols=27 Identities=26% Similarity=0.392 Sum_probs=21.7
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVEL 80 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL 80 (156)
+.|=...|+| +.|..+|++|..|++||
T Consensus 55 ~~~E~ADLlYHllVlL~~~gi~~~dV~~eL 84 (84)
T TIGR03188 55 LVYEAADLLYHLLVLLAAQGVSLEDVLAEL 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHhhC
Confidence 5666677766 77889999999988886
No 46
>PF07033 Orthopox_B11R: Orthopoxvirus B11R protein; InterPro: IPR009754 This family consists of several Orthopoxvirus B11R proteins of around 70 residues in length. The function of this family is unknown.
Probab=27.57 E-value=1e+02 Score=21.15 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCCCccccHHHHHHHHHhhCCCCCCCCC
Q psy280 75 FVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDT 124 (156)
Q Consensus 75 pI~~EL~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI~~aL~~~~~~~~ 124 (156)
.||.|++|-|.-+-|--+++... .+++---..+|+.||--+..+..
T Consensus 9 ~i~neidreke~ilknve~ennk----ni~knhps~yirealvintss~s 54 (71)
T PF07033_consen 9 DIMNEIDREKEEILKNVEMENNK----NINKNHPSKYIREALVINTSSNS 54 (71)
T ss_pred HHHHHHHHHHHHHHHhhhhhccc----cccccCcHHHHHHHHheecCCCc
Confidence 89999999998887777776654 35555567889999876665543
No 47
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.04 E-value=1.7e+02 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q psy280 15 NSQHDLESLVDEISEIIKQ 33 (156)
Q Consensus 15 ~~l~~l~~sl~~Le~~L~~ 33 (156)
.+++.++.+|+.||.+...
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554443
No 48
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.26 E-value=2e+02 Score=19.12 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy280 17 QHDLESLVDEISEIIKQVQ 35 (156)
Q Consensus 17 l~~l~~sl~~Le~~L~~ll 35 (156)
.+.+..+|+.+++.++.++
T Consensus 23 n~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 23 NEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333
No 49
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=26.20 E-value=2e+02 Score=25.73 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhccc
Q psy280 75 FVKVELKRIQETMKKFKQTKDKL 97 (156)
Q Consensus 75 pI~~EL~RVK~Ym~KiK~~e~~~ 97 (156)
||++=|+--+-..+.++++.++.
T Consensus 109 PVKqWLEERR~lQgEmQ~LrDKL 131 (351)
T PF07058_consen 109 PVKQWLEERRFLQGEMQQLRDKL 131 (351)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877777777777777765
No 50
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=25.82 E-value=3.9e+02 Score=22.25 Aligned_cols=28 Identities=14% Similarity=0.480 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy280 4 NLIDELLSKFINSQHDLESLVDEISEII 31 (156)
Q Consensus 4 ~~i~~~~~~f~~~l~~l~~sl~~Le~~L 31 (156)
.+++.++..|..-++.+++.++++|+.+
T Consensus 138 ~il~~ivd~~~~~l~~l~~~~~~le~~l 165 (318)
T TIGR00383 138 DIFDAIIDSYFPLLENIEDELEELEDEI 165 (318)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4566667777777788888888887765
No 51
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=25.51 E-value=48 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhcCCCch
Q psy280 54 VLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 54 laY~lnSL~~~yLKt~Gvdp~ 74 (156)
++|-+|.||...|+..|.+..
T Consensus 48 ~C~elN~lf~~lL~~lGf~v~ 68 (240)
T PF00797_consen 48 YCFELNGLFYWLLRELGFDVT 68 (240)
T ss_dssp -HHHHHHHHHHHHHHCT-EEE
T ss_pred EhHHHHHHHHHHHHHCCCeEE
Confidence 399999999999999998766
No 52
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.50 E-value=56 Score=22.91 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhccc
Q psy280 80 LKRIQETMKKFKQTKDKL 97 (156)
Q Consensus 80 L~RVK~Ym~KiK~~e~~~ 97 (156)
..||++||+|++.++...
T Consensus 53 r~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 53 EQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 478999999999998754
No 53
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.28 E-value=1.1e+02 Score=22.37 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhcccCCCccccHHHHHHHHHhhCC
Q psy280 81 KRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALW 117 (156)
Q Consensus 81 ~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI~~aL~ 117 (156)
+||..|++.++++-.....++. +..+|++|+..+..
T Consensus 8 ekiekYi~~leeaL~~~k~~~~-~~s~ae~~~~ma~~ 43 (90)
T COG1849 8 EKIEKYIELLEEALKEIKSRPG-DRSAAEDFVDMAES 43 (90)
T ss_pred HHHHHHHHHHHHHHHHhccCCC-cchHHHHHHHHHHH
Confidence 5889999998888665544443 44488888877653
No 54
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=25.25 E-value=1.8e+02 Score=20.40 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=25.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 9 LLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 9 ~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
+++--+..++.|++++..+...|+.+...
T Consensus 12 LLsRIi~NvekLNEsv~~lN~~l~eIn~~ 40 (72)
T PF08650_consen 12 LLSRIIGNVEKLNESVAELNQELEEINRA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777888999999999999999887766
No 55
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=25.15 E-value=3.4e+02 Score=21.28 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=16.9
Q ss_pred chhhhHHHHH--------HHHHhHHHHHHHHHHHHHHHHH
Q psy280 2 TLNLIDELLS--------KFINSQHDLESLVDEISEIIKQ 33 (156)
Q Consensus 2 ~~~~i~~~~~--------~f~~~l~~l~~sl~~Le~~L~~ 33 (156)
.+.-|+.++. .+.+.+..+++.+..++...+-
T Consensus 60 sL~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~L~~~~~~ 99 (172)
T cd04790 60 SLEDIRSLLQQPGDDATDVLRRRLAELNREIQRLRQQQRA 99 (172)
T ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665 3444555555555555554433
No 56
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=24.96 E-value=2e+02 Score=23.81 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCCch-hHHHHHHHHHHHHHHHHhhhcccCCCccccHHHHHHHH
Q psy280 58 INSLYFINLRIKHVDSD-FVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFV 112 (156)
Q Consensus 58 lnSL~~~yLKt~Gvdp~-pI~~EL~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI 112 (156)
+.+||=+.=-+.=.|-+ .+.+||+|-+.-+.+.. ..|.||.++-...+
T Consensus 26 l~~Lfellev~~R~DlK~eLlKELeRq~~~L~~~~-------~~p~vd~~~l~~~l 74 (211)
T PF07072_consen 26 LRALFELLEVLERADLKSELLKELERQRQKLNQWR-------DNPGVDQEALDALL 74 (211)
T ss_dssp HHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCTT-------T-TTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHH
Confidence 34444433333445666 99999999988776543 45567776655443
No 57
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=24.70 E-value=1e+02 Score=24.38 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccCC--CccccHHHHHHHHHhhC
Q psy280 77 KVELKRIQETMKKFKQTKDKLTI--MPRLDKDASKRFVRNAL 116 (156)
Q Consensus 77 ~~EL~RVK~Ym~KiK~~e~~~~~--~p~ld~~AAkRfI~~aL 116 (156)
.+-|+.|+.||.-.|.++.+... ..-.|.++|.+.|+.+.
T Consensus 113 ~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~ 154 (155)
T cd00412 113 PHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESI 154 (155)
T ss_pred HHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHh
Confidence 57789999999999999874322 34789999999998864
No 58
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.30 E-value=2.6e+02 Score=19.60 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch---hHHHHHHHHH
Q psy280 18 HDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD---FVKVELKRIQ 84 (156)
Q Consensus 18 ~~l~~sl~~Le~~L~~ll~~~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~---pI~~EL~RVK 84 (156)
+++..-|.++.+.|.-+-. .-+.|. +++..---.+..+|=+-.|-....|. .|-+||.|+|
T Consensus 7 Enl~fmi~eI~~KLnmvN~---gvl~~e---~~d~~~~edLtdiy~mvkkkenfSpsEmqaiA~eL~rlR 70 (71)
T COG4840 7 ENLDFMIEEIREKLNMVNV---GVLDPE---KYDNANYEDLTDIYDMVKKKENFSPSEMQAIADELGRLR 70 (71)
T ss_pred hhHHHHHHHHHHHHhhhhh---hccCHH---hcccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Confidence 3445555555555433222 223332 34444445667778888899999999 9999999987
No 59
>PF00143 Interferon: Interferon alpha/beta domain; InterPro: IPR000471 Interferons [] are proteins which produce antiviral and antiproliferative responses in cells. On the basis of their sequence interferons are classified into five groups: alpha, alpha-II (or omega), beta, delta (or trophoblast). The sequence differences may possibly cause different responses to various inducers, or result in the recognition of different target cell types []. The main conserved structural feature of interferons is a disulphide bond that, except in mouse beta interferon, occurs in all alpha, beta and omega sequences.; GO: 0005126 cytokine receptor binding, 0006952 defense response, 0005576 extracellular region; PDB: 3UX9_C 3PIW_A 1AU1_B 1WU3_I 3PIV_B 1B5L_A 3SE4_B 3OQ3_A 2KZ1_A 1ITF_A ....
Probab=23.58 E-value=3.6e+02 Score=21.11 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHhcCCCch---hHHHHHHHHHHHHHHHH
Q psy280 64 INLRIKHVDSD---FVKVELKRIQETMKKFK 91 (156)
Q Consensus 64 ~yLKt~Gvdp~---pI~~EL~RVK~Ym~KiK 91 (156)
.|||.++-.+- -|..|..|.=.++.++-
T Consensus 127 ~yLk~K~yS~CAWEiVR~Ei~r~l~~~~~L~ 157 (162)
T PF00143_consen 127 KYLKEKKYSACAWEIVRVEIRRCLSFIDRLT 157 (162)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999998888 88999998888887764
No 60
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.10 E-value=2.1e+02 Score=22.13 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy280 3 LNLIDELLSKFINSQHDLESLVDEISEIIKQVQA 36 (156)
Q Consensus 3 ~~~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~ 36 (156)
+|.++.-++.+...++.++.+..++..+++-+-.
T Consensus 9 ~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 9 LNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6777888888877777777777777777766643
No 61
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=22.99 E-value=4.1e+02 Score=26.25 Aligned_cols=49 Identities=8% Similarity=-0.104 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 26 EISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 26 ~Le~~L~~ll~~~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
.+...++.+.......+++.++..+-..-=..-..|+-+||+.+|++..
T Consensus 101 ~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~ 149 (810)
T PRK09466 101 RLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAA 149 (810)
T ss_pred HHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcE
Confidence 3344444443333346677766554333334456678899999999776
No 62
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.92 E-value=1.8e+02 Score=20.04 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=17.4
Q ss_pred CchhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy280 1 MTLNLIDELLSKFINSQHDLESLVDEISEII 31 (156)
Q Consensus 1 ~~~~~i~~~~~~f~~~l~~l~~sl~~Le~~L 31 (156)
|++.-|+.++. +.++++.+.+.|..|...|
T Consensus 59 ~~l~~i~~~l~-l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 59 VNLAGVKRILE-LEEELAELRAELDELRARL 88 (91)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 34556666664 5556666666666665544
No 63
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=22.45 E-value=2.5e+02 Score=18.78 Aligned_cols=33 Identities=6% Similarity=0.194 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 5 LIDELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 5 ~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
.+.+.+...+..++..++.+..||.+++.+=..
T Consensus 12 ~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 12 VLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344555566677788888888898888876544
No 64
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.41 E-value=85 Score=18.16 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=17.5
Q ss_pred HHHHHhcCCCchhHHHHH-HHHHHH
Q psy280 63 FINLRIKHVDSDFVKVEL-KRIQET 86 (156)
Q Consensus 63 ~~yLKt~Gvdp~pI~~EL-~RVK~Y 86 (156)
=..|+..|.++.+.++|| +|+..|
T Consensus 10 k~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 10 KDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 356888898888667776 577766
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.34 E-value=4.8e+02 Score=26.74 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCch----------hHHHHHHHHHHHHHHHHhhhc
Q psy280 62 YFINLRIKHVDSD----------FVKVELKRIQETMKKFKQTKD 95 (156)
Q Consensus 62 ~~~yLKt~Gvdp~----------pI~~EL~RVK~Ym~KiK~~e~ 95 (156)
+-.=|+.+||||. .+..+|.+|+..-.+|.+.+.
T Consensus 759 ~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~ 802 (1201)
T PF12128_consen 759 YNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYED 802 (1201)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3466889999995 566677777777666666654
No 66
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.30 E-value=2.2e+02 Score=19.79 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhccc
Q psy280 80 LKRIQETMKKFKQTKDKL 97 (156)
Q Consensus 80 L~RVK~Ym~KiK~~e~~~ 97 (156)
..+|++||+|+..+.+..
T Consensus 54 r~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 54 QEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 889999999999998754
No 67
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.27 E-value=79 Score=20.46 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHH-----hhcCCChHHHHHHHHHH-HHHH
Q psy280 25 DEISEIIKQVQAV-----DFTKLPNDKKIEADLLV-LYAI 58 (156)
Q Consensus 25 ~~Le~~L~~ll~~-----~~~~lsple~akl~l~l-aY~l 58 (156)
+++++.|+.++.. ...-|++.+|+-++-+. .|-+
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm~~~~R~~vH~lA~~~~L 41 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPMDKHGRKTIHKLANCYNL 41 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCCCHHHHHHHHHHHHHcCC
Confidence 4566666666655 55678999999887665 4433
No 68
>KOG0506|consensus
Probab=22.26 E-value=1.4e+02 Score=28.53 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCch-hHHHHHHHHHHHHHHHHhhhc---ccCCCccccHHHHHHHHHhhCCC
Q psy280 62 YFINLRIKHVDSD-FVKVELKRIQETMKKFKQTKD---KLTIMPRLDKDASKRFVRNALWT 118 (156)
Q Consensus 62 ~~~yLKt~Gvdp~-pI~~EL~RVK~Ym~KiK~~e~---~~~~~p~ld~~AAkRfI~~aL~~ 118 (156)
|+--||..|+-++ | |++..|.++|..+. ..++.--+|++-=|+.|.+.+.=
T Consensus 108 FiTALkstGLrtsDP------RLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~l 162 (622)
T KOG0506|consen 108 FITALKSTGLRTSDP------RLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVL 162 (622)
T ss_pred HHHHHHHcCCCcCCc------hHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhH
Confidence 4567888998665 5 78888888888774 33345589999999999888753
No 69
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=21.71 E-value=2e+02 Score=24.10 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHH-----hhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 20 LESLVDEISEIIKQVQAV-----DFTKL--PNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 20 l~~sl~~Le~~L~~ll~~-----~~~~l--sple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
|.+.++++.+.+++.+.- ....- +.+.+..+--...|+++--+|.+|+..|+.|+
T Consensus 25 f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~~al~~~l~~~Gi~P~ 86 (318)
T PF00698_consen 25 FRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQVALARLLRSWGIKPD 86 (318)
T ss_dssp HHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHHHHHHHHHHHTTHCES
T ss_pred hHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhhhhhhhhhcccccccc
Confidence 455566555555443222 11111 23444445455566677778899999999998
No 70
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=21.46 E-value=1.4e+02 Score=18.36 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=9.0
Q ss_pred HHHHhHHHHHHHHHHHHH
Q psy280 12 KFINSQHDLESLVDEISE 29 (156)
Q Consensus 12 ~f~~~l~~l~~sl~~Le~ 29 (156)
.+..++++|..++.+|..
T Consensus 19 R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 19 RIEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555555555443
No 71
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.05 E-value=7.3e+02 Score=23.66 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q psy280 3 LNLIDELLSKFINSQHDLESLVDE-ISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSL 61 (156)
Q Consensus 3 ~~~i~~~~~~f~~~l~~l~~sl~~-Le~~L~~ll~~~~~~lsple~akl~l~laY~lnSL 61 (156)
+|-.++....|++++.+-...... +-++|+++.......|+++=+ +|+-=+++-++|.
T Consensus 296 I~~rDe~F~~FIRSLgss~sa~G~~l~~aLe~l~~~nfG~L~~~I~-~LYkRL~~gids~ 354 (527)
T COG1955 296 INRRDEAFPSFIRSLGSSLSAVGNTLVEALEALDRHNFGILTEDIR-RLYKRLAMGIDSN 354 (527)
T ss_pred HhhHHhhhHHHHHHhhhhhhhcchhHHHHHHHhhhhccccccHHHH-HHHHHHHccCCHH
Confidence 467889999999999999888888 889999999887777777654 4455555555543
No 72
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=20.57 E-value=5.7e+02 Score=22.96 Aligned_cols=30 Identities=3% Similarity=0.247 Sum_probs=25.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy280 11 SKFINSQHDLESLVDEISEIIKQVQAVDFT 40 (156)
Q Consensus 11 ~~f~~~l~~l~~sl~~Le~~L~~ll~~~~~ 40 (156)
..|......|.+.+..+|..|..++....+
T Consensus 294 ~~w~~~~~~f~~~i~~lE~~l~~~l~~~f~ 323 (579)
T PF08385_consen 294 EEWERDFSEFRERIEDLERRLANILRQAFD 323 (579)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 377888889999999999999999888444
No 73
>PF00502 Phycobilisome: Phycobilisome protein; InterPro: IPR012128 Cyanobacteria and red algae harvest light through water-soluble complexes, called phycobilisomes, which are attached to the outer face of the thylakoid membrane []. These complexes are capable of transferring the absorbed energy to the photosynthetic reaction centre with greater than 95% efficiency. Phycobilisomes contain various photosynthetic light harvesting proteins known as biliproteins, and linker proteins which help assemble the structure. The two main structural elements of the complex are a core located near the photosynthetic reaction centre, and rods attached to this core. Allophycocyanin is the major component of the core, while the rods contain phycocyanins, phycoerythrins and linker proteins. The rod biliproteins harvest photons, with the excitation energy being passed through the rods into the allophycocyanin in the core. Other core biliproteins subsequently pass this energy to chlorophyll within the thylakoid membrane. This entry represents the alpha and beta subunits found in biliproteins from cyanobacteria and red algae. Structural studies indicate that the basic structural unit of most biliproteins is a heterodimer composed of these alpha and beta subunits [, , , ]. The full protein is a ring-like trimer assembly of these heterodimers. Each subunit of the heterodimer has eight helices and binds chromophores through thioester bonds formed at particular cysteine residues. These chromophores, also known as bilins, are open-chain tetrapyrroles whose number and type vary with the particular biliprotein eg R-phyocerythrin binds five phycoerythrobilins per heterodimer, while allophycocyanin binds two phycocyanobilins per heterodimer.; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2VML_I 2VJR_A 1KTP_B 3L0F_B 1JBO_B 3KVS_B 1PHN_B 3BRP_B 2C7K_B 2C7L_B ....
Probab=20.43 E-value=3e+02 Score=21.25 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q psy280 6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSL 61 (156)
Q Consensus 6 i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~~~~~lsple~akl~l~laY~lnSL 61 (156)
+++.+.+| .-.++..-.+++-+-......|++.+.+.+.-.+=|+++.|
T Consensus 108 l~ei~~al-------~vp~~~~v~al~~lk~~~~~~l~~e~~~~~~~yfD~~i~~l 156 (157)
T PF00502_consen 108 LREIYRAL-------GVPIDAYVEALQCLKEAALQLLSPEAAAEIAPYFDYLINAL 156 (157)
T ss_dssp HHHHHHHH-------T--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------cCCchHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHC
Confidence 44555555 33333344444444444566777999999999999999887
No 74
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=20.42 E-value=1.6e+02 Score=24.67 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCch-hHHHHHHHHHHHHHH
Q psy280 62 YFINLRIKHVDSD-FVKVELKRIQETMKK 89 (156)
Q Consensus 62 ~~~yLKt~Gvdp~-pI~~EL~RVK~Ym~K 89 (156)
--|--+.-|-.|. -|..+|+|.|.||+-
T Consensus 182 ~a~va~~fgeepeqqI~~DL~RFk~~~e~ 210 (217)
T COG5637 182 GAVVAKLFGEEPEQQIQDDLERFKEYQEN 210 (217)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHc
Confidence 3344566699999 999999999999975
No 75
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=20.39 E-value=90 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=17.5
Q ss_pred HHHhcCCCch-hHHHHHHHHHH
Q psy280 65 NLRIKHVDSD-FVKVELKRIQE 85 (156)
Q Consensus 65 yLKt~Gvdp~-pI~~EL~RVK~ 85 (156)
-.|.+||||. -+..=|+||..
T Consensus 5 TcK~ngv~P~~yL~~vL~~i~~ 26 (39)
T PF13817_consen 5 TCKLNGVNPYAYLTDVLERIPN 26 (39)
T ss_pred HHHHcCCCHHHHHHHHHHHHcc
Confidence 3588999999 88888888876
No 76
>PRK10925 superoxide dismutase; Provisional
Probab=20.05 E-value=2.9e+02 Score=22.53 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCch-hHHHHHH
Q psy280 51 DLLVLYAINSLYFINLRIKHVDSD-FVKVELK 81 (156)
Q Consensus 51 ~l~laY~lnSL~~~yLKt~Gvdp~-pI~~EL~ 81 (156)
++...+...++||--|.- |-.|. .+...++
T Consensus 74 nna~g~~NH~~fw~~L~P-~~~p~g~L~~~I~ 104 (206)
T PRK10925 74 NNAGGHANHSLFWKGLKK-GTTLQGDLKAAIE 104 (206)
T ss_pred HHHHHHHHHHHHHhccCC-CCCCCHHHHHHHH
Confidence 667789999999999976 43566 6654443
No 77
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=20.00 E-value=3.5e+02 Score=19.53 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH----------HHHHHHHHHh
Q psy280 18 HDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAI----------NSLYFINLRI 68 (156)
Q Consensus 18 ~~l~~sl~~Le~~L~~ll~~~~~~lsple~akl~l~laY~l----------nSL~~~yLKt 68 (156)
..|...|..|+..-..........|++.+|.++--.+...- .+-||..||.
T Consensus 47 ~~~~~gl~~ld~~a~~~~g~~F~~l~~~~~~~lL~~~~~~~~~~~~~~~~~~~~ff~~lr~ 107 (131)
T PF13618_consen 47 RAFRAGLAALDAYAQKRYGKSFAELSPAQREALLDALEKSEAAGPDWDGIPGARFFQQLRN 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHhccccccccccCcHHHHHHHHHH
Confidence 44566666666655555555778999999988877776543 3556666554
Done!