Query psy280
Match_columns 156
No_of_seqs 106 out of 195
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:16:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yvw_A PRA-PH, phosphoribosyl- 66.4 8.6 0.0003 28.1 4.6 32 54-85 59-93 (115)
2 2rfp_A Putative NTP pyrophosph 63.2 43 0.0015 26.0 8.3 61 18-82 58-125 (171)
3 3nl9_A Putative NTP pyrophosph 61.9 51 0.0018 25.2 8.7 66 17-82 57-125 (171)
4 2a7w_A PRA-PH, phosphoribosyl- 59.3 11 0.00038 27.5 4.1 31 54-84 60-93 (116)
5 2pnv_A Small conductance calci 51.6 38 0.0013 20.5 5.1 34 4-37 5-38 (43)
6 3kj0_B BCL-2-like protein 11; 46.7 18 0.00063 19.9 2.7 21 69-89 2-23 (27)
7 2rnn_A E3 SUMO-protein ligase 43.9 25 0.00085 25.7 3.9 52 62-117 45-97 (114)
8 3tjt_A Superoxide dismutase; m 36.5 40 0.0014 26.5 4.3 47 45-91 71-118 (208)
9 3vem_A Helicase protein MOM1; 34.9 28 0.00097 25.5 2.9 21 75-95 36-56 (115)
10 1ids_A Iron superoxide dismuta 32.3 92 0.0031 24.5 5.8 64 17-83 37-102 (207)
11 2do1_A Nuclear protein HCC-1; 31.6 36 0.0012 21.6 2.7 26 64-89 20-46 (55)
12 1ez3_A Syntaxin-1A; three heli 30.8 1.3E+02 0.0044 20.6 6.1 30 8-37 5-34 (127)
13 3swy_A Cyclic nucleotide-gated 29.3 96 0.0033 19.0 4.3 25 13-37 3-27 (46)
14 1b06_A Protein (superoxide dis 28.8 95 0.0032 24.4 5.3 62 17-82 42-111 (210)
15 1ix9_A Mnsod, superoxide dismu 28.6 60 0.0021 25.4 4.1 36 46-82 68-104 (205)
16 1mng_A Manganese superoxide di 28.6 1.2E+02 0.004 23.8 5.8 39 45-83 69-109 (203)
17 2wuj_A Septum site-determining 27.3 83 0.0028 19.6 3.9 30 5-34 24-53 (57)
18 3fwc_B Nuclear mRNA export pro 26.9 1.5E+02 0.0052 20.2 7.3 38 51-92 47-84 (85)
19 3dc5_A Superoxide dismutase [M 26.7 78 0.0027 24.7 4.4 37 46-82 62-99 (195)
20 1bsm_A Superoxide dismutase; o 26.7 1.1E+02 0.0036 24.0 5.2 44 40-83 56-103 (201)
21 1jrj_A Exendin-4; Trp-CAGE, GL 26.2 26 0.00088 21.0 1.2 20 103-122 14-33 (39)
22 2z5i_A TM, general control pro 26.2 55 0.0019 20.4 2.8 19 15-33 12-30 (52)
23 2cdq_A Aspartokinase; aspartat 25.9 2.5E+02 0.0084 24.7 8.0 37 38-74 131-167 (510)
24 1yxb_A PRA-PH, phosphoribosyl- 25.2 56 0.0019 23.0 3.0 29 54-82 61-92 (98)
25 1wmi_B RELB, hypothetical prot 24.8 1.5E+02 0.0052 19.4 5.3 41 75-115 8-48 (67)
26 3shg_B VBHA; ampylation, adeny 24.8 1.5E+02 0.0051 19.3 6.6 46 42-92 2-59 (61)
27 2rcv_A Superoxide dismutase [M 24.2 1.1E+02 0.0037 23.9 4.8 39 45-83 68-108 (202)
28 3viq_A SWI5-dependent recombin 23.3 2.1E+02 0.0073 20.6 6.8 13 62-74 97-109 (122)
29 2l63_A GLP-2, glucagon-like pe 23.1 44 0.0015 19.2 1.8 17 102-118 13-29 (33)
30 2oqq_A Transcription factor HY 22.8 1.3E+02 0.0046 18.1 4.4 31 7-37 2-32 (42)
31 3h4c_A Transcription factor TF 22.7 50 0.0017 27.0 2.6 55 3-64 117-176 (260)
32 3mtu_E Head morphogenesis prot 22.6 1.3E+02 0.0045 20.4 4.4 30 8-37 30-59 (77)
33 1zme_C Proline utilization tra 22.6 86 0.003 19.2 3.3 18 18-35 47-64 (70)
34 2g49_C Glucagon preproprotein; 21.8 41 0.0014 18.8 1.4 15 102-116 13-27 (29)
35 2kvu_A MKL/myocardin-like prot 21.8 63 0.0022 21.8 2.6 26 64-89 36-62 (75)
36 2hr2_A Hypothetical protein; a 21.3 93 0.0032 23.2 3.8 71 15-88 68-150 (159)
37 1pl4_A Superoxide dismutase [M 20.4 1.2E+02 0.004 23.7 4.3 37 46-82 61-99 (198)
38 4i0x_B ESAT-6-like protein MAB 20.0 2E+02 0.0069 19.1 5.1 33 5-37 15-47 (103)
No 1
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=66.41 E-value=8.6 Score=28.10 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHHHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVELKRIQE 85 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL~RVK~ 85 (156)
++|=+..|+| +.|..+|++++.|.+||.|=..
T Consensus 59 l~~E~ADLlYHllVlL~~~gv~l~dV~~eL~~R~~ 93 (115)
T 1yvw_A 59 VVKEMVDVFYHCFVLLAEKNIALEDVMREVKERNG 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 5677777777 6788899999999999998764
No 2
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=63.20 E-value=43 Score=26.00 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC---C----hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy280 18 HDLESLVDEISEIIKQVQAVDFTKL---P----NDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKR 82 (156)
Q Consensus 18 ~~l~~sl~~Le~~L~~ll~~~~~~l---s----ple~akl~l~laY~lnSL~~~yLKt~Gvdp~pI~~EL~R 82 (156)
+.|.+.+..+..+|+....+...+- + ..+.+.--.=+.|++...+. ..|+|++++..|..|
T Consensus 58 ~~~~~~~~~l~~~id~a~~k~~~~~~~~~~~~dlve~aDaL~Dl~Yv~~G~~~----~~Gid~~~~~~eVh~ 125 (171)
T 2rfp_A 58 TEFLAAIETFKAGLDQAVKKSLKETYPVTEVERLVGQGDALTDALYFIMGSFV----EAGLEPGPLFEIVQQ 125 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHH----HHTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHhCHHHHHHHHHH----HhCCCHHHHHHHHHH
Confidence 4567778877777777777633321 1 23333333333455444333 349998888887766
No 3
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=61.86 E-value=51 Score=25.19 Aligned_cols=66 Identities=5% Similarity=-0.010 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH---HHHHhcCCCchhHHHHHHH
Q psy280 17 QHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYF---INLRIKHVDSDFVKVELKR 82 (156)
Q Consensus 17 l~~l~~sl~~Le~~L~~ll~~~~~~lsple~akl~l~laY~lnSL~~---~yLKt~Gvdp~pI~~EL~R 82 (156)
...|.+++..+...+..+......+..+....+-.+-.+=++..|+| -+.-..|+|++++..|..|
T Consensus 57 ~~ef~~av~~l~~~~~~a~~~~~~e~~~a~~~~d~ve~~DaL~D~~yv~~g~~~~~g~~~~~~~~eV~~ 125 (171)
T 3nl9_A 57 ETEFLAAIETFKAGLDQAVKKSLKETYPVTEVERLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQ 125 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34567777777777777666655554443333322333333333332 2333469998877766654
No 4
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=59.27 E-value=11 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=25.5
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVELKRIQ 84 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL~RVK 84 (156)
++|=+..|+| +.|..+|++++.|.+||.|=.
T Consensus 60 l~~E~ADLlYHllVlL~~~gv~l~dV~~eL~~R~ 93 (116)
T 2a7w_A 60 LVREVADLWFHTMVLLTYHGLRPEDVVMELHRRE 93 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5677777777 668889999999999999854
No 5
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=51.55 E-value=38 Score=20.55 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 4 NLIDELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 4 ~~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
|.+-++.+++...-+.|+..|..||.-|+.|...
T Consensus 5 n~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999887654
No 6
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=46.75 E-value=18 Score=19.88 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=15.9
Q ss_pred cCCCch-hHHHHHHHHHHHHHH
Q psy280 69 KHVDSD-FVKVELKRIQETMKK 89 (156)
Q Consensus 69 ~Gvdp~-pI~~EL~RVK~Ym~K 89 (156)
.|..|. -|-+||.||-.-|+.
T Consensus 2 s~~~PE~wiAqELRRIGDeFN~ 23 (27)
T 3kj0_B 2 SGGRPEIWYAQELRRIGDEFNA 23 (27)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHh
Confidence 477888 999999999776654
No 7
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=43.89 E-value=25 Score=25.66 Aligned_cols=52 Identities=12% Similarity=-0.114 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCchhHHHHH-HHHHHHHHHHHhhhcccCCCccccHHHHHHHHHhhCC
Q psy280 62 YFINLRIKHVDSDFVKVEL-KRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALW 117 (156)
Q Consensus 62 ~~~yLKt~Gvdp~pI~~EL-~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI~~aL~ 117 (156)
+=.+||..|....+.|+|| +||..|++.-.... ..-.+-..|.+++|.+...
T Consensus 45 LK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g----~~D~~rl~ai~~lI~~~~~ 97 (114)
T 2rnn_A 45 LKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVG----KSDPYRVQAVKFLIERIRK 97 (114)
T ss_dssp HHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTT----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccC----CCCHHHHHHHHHHHHHHhc
Confidence 4468899999888899998 59999998755221 1123445667778877663
No 8
>3tjt_A Superoxide dismutase; metal ION binding, rossmann fold, oxidoreductase; 1.80A {Clostridium difficile}
Probab=36.46 E-value=40 Score=26.53 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHHHHH
Q psy280 45 DKKIEADLLVLYAINSLYFINLRIKHVDSD-FVKVELKRIQETMKKFK 91 (156)
Q Consensus 45 le~akl~l~laY~lnSL~~~yLKt~Gvdp~-pI~~EL~RVK~Ym~KiK 91 (156)
...+-.++...+...||||--|.-.|..|. .+..-++|-=.-+++.|
T Consensus 71 ~~~~~~nn~gg~~NH~~fw~~l~p~g~~p~g~L~~aI~~~FGS~d~fk 118 (208)
T 3tjt_A 71 IATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEAIDRDFGSFEKFK 118 (208)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTBCSSCCCCCHHHHHHHHHHHSSHHHHH
T ss_pred hhHHHHHhhHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCHHHHH
Confidence 344555667788999999987777777787 77766655433334433
No 9
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.93 E-value=28 Score=25.47 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q psy280 75 FVKVELKRIQETMKKFKQTKD 95 (156)
Q Consensus 75 pI~~EL~RVK~Ym~KiK~~e~ 95 (156)
|+..||+|++.+++.+.+.-+
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE 56 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFE 56 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877643
No 10
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A
Probab=32.30 E-value=92 Score=24.48 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhc-CCCch-hHHHHHHHH
Q psy280 17 QHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIK-HVDSD-FVKVELKRI 83 (156)
Q Consensus 17 l~~l~~sl~~Le~~L~~ll~~~~~~lsple~akl~l~laY~lnSL~~~yLKt~-Gvdp~-pI~~EL~RV 83 (156)
|++|+..++.+.+... ...+..+-.+.++-.++.......|+||--|.-. |..|. .+...++|-
T Consensus 37 V~~LN~~~~~~~~~~~---~~~~~~i~~~~~~i~~N~ggh~NHs~fw~~L~P~gg~~P~g~L~~aI~~~ 102 (207)
T 1ids_A 37 VKGANDAVAKLEEARA---KEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSPNGGDKPTGELAAAIADA 102 (207)
T ss_dssp HHHHHHHHHHHHHHHH---TTCCTTHHHHHHHHHHHHHHHHHHHHHHHHBCTTCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHhHh---cCCHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence 4455666655544321 1122223344566666677888899999999876 45676 776666543
No 11
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=31.62 E-value=36 Score=21.56 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.0
Q ss_pred HHHHhcCCCchhHHHHH-HHHHHHHHH
Q psy280 64 INLRIKHVDSDFVKVEL-KRIQETMKK 89 (156)
Q Consensus 64 ~yLKt~Gvdp~pI~~EL-~RVK~Ym~K 89 (156)
.+|+..|.++..-+.|| +|++.|+..
T Consensus 20 ~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 20 QECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp HHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 46888998888778886 699999876
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.84 E-value=1.3e+02 Score=20.62 Aligned_cols=30 Identities=17% Similarity=0.520 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 8 ELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 8 ~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
+++..|...++.....|+.|+..++.|-..
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~ 34 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRK 34 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999887666
No 13
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.35 E-value=96 Score=19.01 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 13 FINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 13 f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
+-++++.++.+++.|..-+..|+..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae 27 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999998888888876
No 14
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A
Probab=28.76 E-value=95 Score=24.42 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHHHHHHHHHHHhc---CCCch-hHHHHHHH
Q psy280 17 QHDLESLVDEISEIIKQVQAVDFT----KLPNDKKIEADLLVLYAINSLYFINLRIK---HVDSD-FVKVELKR 82 (156)
Q Consensus 17 l~~l~~sl~~Le~~L~~ll~~~~~----~lsple~akl~l~laY~lnSL~~~yLKt~---Gvdp~-pI~~EL~R 82 (156)
|++|+..++++++.-.. .+. .+-.+.++-.++.......|+||--|.-. |..|. .+...+++
T Consensus 42 V~nLN~~~~~l~~~~~~----~~~~~~~~i~~~~~~i~nn~gg~~NH~~fw~~L~P~~~~g~~P~g~L~~aI~~ 111 (210)
T 1b06_A 42 VNGANSLLDRLEKLIKG----DLPQGQYDLQGILRGLTFNINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDK 111 (210)
T ss_dssp HHHHHHHHHHHHHHHHT----SSCTTSCCHHHHHHHHHHHHHHHHHHHHHHHTBCCTTTSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchh----hccccHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH
Confidence 45556666555553111 111 23334455566667888999999999865 45676 66666554
No 15
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F mutant, hydrogen bond, reactivity, ultra-high resolution, oxidoreductase; 0.90A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A 1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A
Probab=28.65 E-value=60 Score=25.44 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCch-hHHHHHHH
Q psy280 46 KKIEADLLVLYAINSLYFINLRIKHVDSD-FVKVELKR 82 (156)
Q Consensus 46 e~akl~l~laY~lnSL~~~yLKt~Gvdp~-pI~~EL~R 82 (156)
.++-.++.......|+||--|.- |..|. .+...++|
T Consensus 68 ~~~i~nn~gg~~NH~~fw~~L~p-g~~P~g~L~~aI~~ 104 (205)
T 1ix9_A 68 KTVLRNNAGGHANHSLFWKGLKK-GTTLQGDLKAAIER 104 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHTBCS-SCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHH
Confidence 45556667788899999999987 77777 66666554
No 16
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A
Probab=28.61 E-value=1.2e+02 Score=23.75 Aligned_cols=39 Identities=10% Similarity=-0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCch-hHHHHHHHH
Q psy280 45 DKKIEADLLVLYAINSLYFINLRIK-HVDSD-FVKVELKRI 83 (156)
Q Consensus 45 le~akl~l~laY~lnSL~~~yLKt~-Gvdp~-pI~~EL~RV 83 (156)
++++-.++.......|+||--|.-. |..|. .+...++|-
T Consensus 69 ~~~~i~nn~gg~~NH~~fw~~L~p~gg~~P~g~L~~aI~~~ 109 (203)
T 1mng_A 69 IQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQ 109 (203)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCTTSCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Confidence 4456667777899999999999875 44566 666665543
No 17
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.29 E-value=83 Score=19.61 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy280 5 LIDELLSKFINSQHDLESLVDEISEIIKQV 34 (156)
Q Consensus 5 ~i~~~~~~f~~~l~~l~~sl~~Le~~L~~l 34 (156)
-++.||...+..++.|......|+..++.+
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888877654
No 18
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=26.89 E-value=1.5e+02 Score=20.16 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh
Q psy280 51 DLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMKKFKQ 92 (156)
Q Consensus 51 ~l~laY~lnSL~~~yLKt~Gvdp~pI~~EL~RVK~Ym~KiK~ 92 (156)
+|+-||.=..+|++||-+.- ....+....|.||.|+++
T Consensus 47 eLy~AFihE~lY~~~leskA----d~f~~~~lkk~~~~kw~~ 84 (85)
T 3fwc_B 47 ELYDAFLHERLYLIYMDSRA----ELKRNSTLKKKFFEKWQA 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 56779999999999997722 788888888999998874
No 19
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A
Probab=26.71 E-value=78 Score=24.69 Aligned_cols=37 Identities=14% Similarity=-0.047 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCch-hHHHHHHH
Q psy280 46 KKIEADLLVLYAINSLYFINLRIKHVDSD-FVKVELKR 82 (156)
Q Consensus 46 e~akl~l~laY~lnSL~~~yLKt~Gvdp~-pI~~EL~R 82 (156)
.++-.++...+...|+||--|.-.|..|. .+...++|
T Consensus 62 ~~~~~~n~ggh~NH~~fw~~l~P~gg~P~g~L~~aI~~ 99 (195)
T 3dc5_A 62 QPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKR 99 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHTBCSSCCCCCHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 34444555677788999999987776777 66665554
No 20
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A
Probab=26.70 E-value=1.1e+02 Score=23.97 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=30.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHhc---CCCch-hHHHHHHHH
Q psy280 40 TKLPNDKKIEADLLVLYAINSLYFINLRIK---HVDSD-FVKVELKRI 83 (156)
Q Consensus 40 ~~lsple~akl~l~laY~lnSL~~~yLKt~---Gvdp~-pI~~EL~RV 83 (156)
..+..++++-.++.......|+||--|.-. |..|. .+...++|-
T Consensus 56 ~~i~~~~~~i~nn~ggh~NH~~fw~~l~p~~~~g~~P~g~L~~aI~~~ 103 (201)
T 1bsm_A 56 GAINKLEKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAIDEF 103 (201)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTBCCTTSSCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence 344555666666777888999999999865 45666 666665543
No 21
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=26.24 E-value=26 Score=21.02 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHhhCCCCCCC
Q psy280 103 LDKDASKRFVRNALWTPPES 122 (156)
Q Consensus 103 ld~~AAkRfI~~aL~~~~~~ 122 (156)
++..||++||..-+.+....
T Consensus 14 l~~~aak~fv~wL~~~k~r~ 33 (39)
T 1jrj_A 14 MEEEAVRLFIEWLKNGGPSS 33 (39)
T ss_dssp HHHHHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 67889999999988765343
No 22
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.20 E-value=55 Score=20.35 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q psy280 15 NSQHDLESLVDEISEIIKQ 33 (156)
Q Consensus 15 ~~l~~l~~sl~~Le~~L~~ 33 (156)
++|..|+..||+||+.|..
T Consensus 12 RsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677889999999987653
No 23
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=25.91 E-value=2.5e+02 Score=24.73 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=24.0
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q psy280 38 DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD 74 (156)
Q Consensus 38 ~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~ 74 (156)
.....++-++..+-..--+....++-+||...|++..
T Consensus 131 ~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~ 167 (510)
T 2cdq_A 131 MMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKAR 167 (510)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 3556777666554444345555567799999998743
No 24
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=25.16 E-value=56 Score=23.05 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHHH---HHHHhcCCCchhHHHHHHH
Q psy280 54 VLYAINSLYF---INLRIKHVDSDFVKVELKR 82 (156)
Q Consensus 54 laY~lnSL~~---~yLKt~Gvdp~pI~~EL~R 82 (156)
++|=+..|+| +.|..+|++++.|.+||..
T Consensus 61 l~~E~ADLlYHllVlL~~~gv~l~dV~~eL~~ 92 (98)
T 1yxb_A 61 AAEEISQLLYHVQVMMVARGISLDDVYAHLLE 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677777777 6688899999999999853
No 25
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=24.81 E-value=1.5e+02 Score=19.40 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCCCccccHHHHHHHHHhh
Q psy280 75 FVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNA 115 (156)
Q Consensus 75 pI~~EL~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI~~a 115 (156)
.|+.||+|+|.-+.|+...--+..+...++.+--..+.+-|
T Consensus 8 ~vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~eA 48 (67)
T 1wmi_B 8 DVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELA 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 59999999999999988775444222235554444444433
No 26
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=24.79 E-value=1.5e+02 Score=19.31 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch-hHHHHHHH-----------HHHHHHHHHh
Q psy280 42 LPNDKKIEADLLVLYAINSLYFINLRIKHVDSD-FVKVELKR-----------IQETMKKFKQ 92 (156)
Q Consensus 42 lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~-pI~~EL~R-----------VK~Ym~KiK~ 92 (156)
|+..|+..=.-+...++.| -|.-|.+|+ .+-..++| |+.||.|++.
T Consensus 2 ltEeE~~~Rr~avq~Aian-----~RLEGLEpd~~~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 2 LSEEEIEYRRRDARNALAS-----QRLEGLEPDPQVVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----HHTTTCCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHh-----hhhccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4555665555666666665 688999999 66666666 5778877764
No 27
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A
Probab=24.21 E-value=1.1e+02 Score=23.92 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCch-hHHHHHHHH
Q psy280 45 DKKIEADLLVLYAINSLYFINLRIK-HVDSD-FVKVELKRI 83 (156)
Q Consensus 45 le~akl~l~laY~lnSL~~~yLKt~-Gvdp~-pI~~EL~RV 83 (156)
+.++-.++.......|+||--|.-. |..|. .+...++|-
T Consensus 68 ~~~~i~nn~gg~~NH~~fw~~L~p~gg~~P~g~L~~aI~~~ 108 (202)
T 2rcv_A 68 IRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSV 108 (202)
T ss_dssp THHHHHHHHHHHHHHHHHHHTBCTTCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Confidence 4556667777899999999999875 45676 666665543
No 28
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=23.32 E-value=2.1e+02 Score=20.61 Aligned_cols=13 Identities=15% Similarity=-0.095 Sum_probs=11.6
Q ss_pred HHHHHHhcCCCch
Q psy280 62 YFINLRIKHVDSD 74 (156)
Q Consensus 62 ~~~yLKt~Gvdp~ 74 (156)
+-++|++.||||+
T Consensus 97 m~~mLk~L~Id~~ 109 (122)
T 3viq_A 97 MSMFLNQFGVPVH 109 (122)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHcCCCHH
Confidence 7789999999987
No 29
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=23.10 E-value=44 Score=19.24 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHhhCCC
Q psy280 102 RLDKDASKRFVRNALWT 118 (156)
Q Consensus 102 ~ld~~AAkRfI~~aL~~ 118 (156)
-++..||++||..-+..
T Consensus 13 ~l~~~aak~fl~wL~~~ 29 (33)
T 2l63_A 13 ILDNLAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 36889999999887754
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.82 E-value=1.3e+02 Score=18.13 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=24.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 7 DELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 7 ~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
|-|++++-..+.+++....+||+-+..|...
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888889999999998888766554
No 31
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=22.70 E-value=50 Score=26.96 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----hhcCCChHHHHHHHHHHHHHHHHHHHH
Q psy280 3 LNLIDELLSKFINSQHDLESLVDEISEIIKQVQAV-----DFTKLPNDKKIEADLLVLYAINSLYFI 64 (156)
Q Consensus 3 ~~~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~-----~~~~lsple~akl~l~laY~lnSL~~~ 64 (156)
-|+|+.|+..+ .-.+...+..-.-|+.. .++.+...||+-+-+++|-+-++|-|.
T Consensus 117 ~NLl~~Yv~kL-------~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLLArT~~~l~W~ 176 (260)
T 3h4c_A 117 DNLLVKYILKL-------GLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALLLARTAQTLSWE 176 (260)
T ss_dssp HHHHHHHHHHT-------TCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHHHHSCGGGGC
T ss_pred hhHHHHHHHHh-------ccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccccccc
Confidence 37777777666 44455566666666666 678999999999999999999999997
No 32
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=22.63 E-value=1.3e+02 Score=20.40 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 8 ELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 8 ~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
+.++.+...--.|+.+||+||+.|...-.+
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK 59 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVAHAKEE 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456666666778899999999988544333
No 33
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.59 E-value=86 Score=19.22 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy280 18 HDLESLVDEISEIIKQVQ 35 (156)
Q Consensus 18 ~~l~~sl~~Le~~L~~ll 35 (156)
+.|++.|..||..|..|-
T Consensus 47 ~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 34
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=21.85 E-value=41 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHhhC
Q psy280 102 RLDKDASKRFVRNAL 116 (156)
Q Consensus 102 ~ld~~AAkRfI~~aL 116 (156)
-++..||++||+.-+
T Consensus 13 ~l~~~aak~fv~wL~ 27 (29)
T 2g49_C 13 YLDSRRAQDFVQWLM 27 (29)
T ss_pred HHHHHHHHHHHHHHh
Confidence 367889999998654
No 35
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.78 E-value=63 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.2
Q ss_pred HHHHhcCCCchhHHHHH-HHHHHHHHH
Q psy280 64 INLRIKHVDSDFVKVEL-KRIQETMKK 89 (156)
Q Consensus 64 ~yLKt~Gvdp~pI~~EL-~RVK~Ym~K 89 (156)
.+|+..|.+..+-+.|| +|++.|++.
T Consensus 36 ~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 36 QELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp HHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 47889999888777776 688888654
No 36
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=21.29 E-value=93 Score=23.19 Aligned_cols=71 Identities=7% Similarity=-0.037 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH----HHHHHHHHHH------HHHHHHhcCCCch--hHHHHHHH
Q psy280 15 NSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEAD----LLVLYAINSL------YFINLRIKHVDSD--FVKVELKR 82 (156)
Q Consensus 15 ~~l~~l~~sl~~Le~~L~~ll~~~~~~lsple~akl~----l~laY~lnSL------~~~yLKt~Gvdp~--pI~~EL~R 82 (156)
..+.+++++|...+.+|+- ++. .-++.| +.++.. ...+.++..| +-.|-+...++|. .|+.||+|
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l-~n~-~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHY-FNR-RGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHH-HHH-HCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHHh-hhc-cccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3455666777777776652 222 123344 344444 4444444443 4578888889999 99999999
Q ss_pred HHHHHH
Q psy280 83 IQETMK 88 (156)
Q Consensus 83 VK~Ym~ 88 (156)
|+.-..
T Consensus 145 ~~~~~~ 150 (159)
T 2hr2_A 145 MMEVAI 150 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 37
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ...
Probab=20.41 E-value=1.2e+02 Score=23.65 Aligned_cols=37 Identities=14% Similarity=-0.042 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCCch-hHHHHHHH
Q psy280 46 KKIEADLLVLYAINSLYFINLRIK-HVDSD-FVKVELKR 82 (156)
Q Consensus 46 e~akl~l~laY~lnSL~~~yLKt~-Gvdp~-pI~~EL~R 82 (156)
.++-.++..+....|+||--|.-. |..|. .+...++|
T Consensus 61 ~~~~~~n~ggh~NH~~fw~~L~P~ggg~P~g~L~~aI~~ 99 (198)
T 1pl4_A 61 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKR 99 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTBCTTCCSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 445556667888899999999876 45677 66666554
No 38
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.01 E-value=2e+02 Score=19.06 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy280 5 LIDELLSKFINSQHDLESLVDEISEIIKQVQAV 37 (156)
Q Consensus 5 ~i~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~ 37 (156)
-|+.....+......++..|+.|+..|.+|...
T Consensus 15 ~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 15 HIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555666666777777888888887777654
Done!