RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy280
         (156 letters)



>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 110

 Score = 25.5 bits (55), Expect = 1.8
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 17  QHDLESLVDEISEIIKQVQAVDFTKLPNDKKI 48
           + ++   +DEI +  + + AV+  K+ + K I
Sbjct: 75  KIEIMKYLDEIDKDAQLIGAVNTIKIEDGKAI 106


>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 150

 Score = 24.8 bits (53), Expect = 3.8
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 64  INLRIKHVDS--DFVKVELKRIQETMKKFKQTKDKLTIMPRLD 104
            N+  +++ S       EL+ + +  +  K+ K   T    L 
Sbjct: 2   FNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLK 44


>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE
          {Haemophilus influenzae [TaxId: 727]}
          Length = 101

 Score = 24.3 bits (52), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 23 LVDEISEIIKQVQAVDFTKLPNDKKIEAD 51
          L DE S+  K  +A +  K  +D K+ AD
Sbjct: 71 LADEYSQRAKLAEACNTLKKLDDGKLYAD 99


>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5,
          PP5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 24.9 bits (54), Expect = 4.5
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 1  MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPN 44
          +T++ + EL+  + + +           +I+ QV+ V  +KL  
Sbjct: 11 VTISFMKELMQWYKDQKKLHR---KCAYQILVQVKEV-LSKLST 50


>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
           channel {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 145

 Score = 24.3 bits (52), Expect = 5.9
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 76  VKVELKRIQE--TMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTPCDKKTKDI 133
           +++E  RIQ+    K+F   K        L +  S  F      TP  +     K TK I
Sbjct: 84  LRLENIRIQQEQKRKRFHGGKSSGNSSSSLGEMVSGTFRA----TPTTTAKQKQKVTKHI 139

Query: 134 PP 135
           PP
Sbjct: 140 PP 141


>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 92

 Score = 23.6 bits (51), Expect = 6.8
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 3  LNLIDELLSKFINSQHDLESLVDEISEIIKQVQAV 37
          LN+  +LL +      +  S  + + E++ +V   
Sbjct: 55 LNITHDLLHRKERLDQESSSTRERVRELLDRVDRA 89


>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine
          5'-diphospho)-2C-methyl-D-erythritol kinase IspE
          {Thermus thermophilus [TaxId: 274]}
          Length = 148

 Score = 23.9 bits (51), Expect = 7.4
 Identities = 12/75 (16%), Positives = 23/75 (30%)

Query: 3  LNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLY 62
          +NL   +  +  +  H+L +L    S   + V     + L        + L   A +   
Sbjct: 9  VNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPVSSGLHFQGPYGRENLAYRAASLYL 68

Query: 63 FINLRIKHVDSDFVK 77
              +   V     K
Sbjct: 69 EAAGQPGGVRILLEK 83


>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 152

 Score = 24.0 bits (51), Expect = 7.4
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 64  INLRIKHV--DSDFVKVELKRIQETMKKFKQTKDKLTIMPRLD 104
           +NL+ + +    DF   E++ + +  K+ K          R  
Sbjct: 3   VNLKGRSLLTLLDFSPEEIRYLLDISKQVKMENRSKLRTERFK 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,967
Number of extensions: 25397
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 29
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)