BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2800
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 89/141 (63%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
YV +GGT++AIAG DFA++ASDTR S +I + + K ++L ++T +G SG D L +
Sbjct: 5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 64
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++A + + + ++ A MLS +LY RR FPYYV ++ G+D GKG VYS+
Sbjct: 65 TKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124
Query: 129 DPVGHCEKVAYRLHGTSAKFM 149
DPVG ++ +++ G+++ +
Sbjct: 125 DPVGSYQRDSFKAGGSASAML 145
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 88/141 (62%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGTV+AIAG DF+++ASDTR S +I + + K ++L ++T +G SG D L +
Sbjct: 5 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 64
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++A + + + ++ A MLS +LY RR FPYYV ++ G+D GKG VYS+
Sbjct: 65 TKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124
Query: 129 DPVGHCEKVAYRLHGTSAKFM 149
DPVG ++ +++ G+++ +
Sbjct: 125 DPVGSYQRDSFKAGGSASAML 145
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 3 EAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNM 62
E Y +GGT++ IAG DFA++A DTR+ ++ +I S + K+F + + +G
Sbjct: 18 EHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFA 77
Query: 63 ADSLEVVSRLQAEINR-SAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTG 121
AD +V R + + + + LS+ A + LLY +R FPYYV ++ G+D G
Sbjct: 78 ADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDG 137
Query: 122 KGGVYSYDPVGHCEKVAYRLHGTSAKFML 150
KG VYS+DPVG E+ R G +A ++
Sbjct: 138 KGAVYSFDPVGSYEREQCRAGGAAASLIM 166
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|1 Chain 1, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|L Chain L, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Z Chain Z, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|L Chain L, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|S Chain S, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|L Chain L, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Z Chain Z, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|L Chain L, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Z Chain Z, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|L Chain L, Proteasome Inhibition By Fellutamide B
pdb|3D29|Z Chain Z, Proteasome Inhibition By Fellutamide B
pdb|3E47|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|L Chain L, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Z Chain Z, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|M Chain M, Proteasome Activator Complex
pdb|1VSY|1 Chain 1, Proteasome Activator Complex
pdb|3L5Q|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|3 Chain 3, Proteasome Activator Complex
pdb|3MG4|L Chain L, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Z Chain Z, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|L Chain L, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Z Chain Z, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|L Chain L, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Z Chain Z, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|L Chain L, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Z Chain Z, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|L Chain L, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Z Chain Z, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|L Chain L, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Z Chain Z, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|M Chain M, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|L Chain L, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Z Chain Z, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|L Chain L, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Z Chain Z, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 222
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 1/143 (0%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGT++ IAG DFA++A DTR+ ++ +I S + K+F + + +G AD +
Sbjct: 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDAL 64
Query: 69 VSRLQAEINR-SAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYS 127
V R + + + + LS+ A + LLY +R FPYYV ++ G+D GKG VYS
Sbjct: 65 VKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYS 124
Query: 128 YDPVGHCEKVAYRLHGTSAKFML 150
+DPVG E+ R G +A ++
Sbjct: 125 FDPVGSYEREQCRAGGAAASLIM 147
>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|X Chain X, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G + IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGID-GTGKGGVYSYDP 130
L+ +N +G+ + M++ LLYE+R PYY + ++ G+D T K + S D
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 131 VGHCEKVA--YRLHGTSAKFMLASMSYLLSP 159
+G C V + + GT A+ M L P
Sbjct: 127 IG-CPMVTDDFVVSGTCAEQMYGMCESLWEP 156
>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|W Chain W, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|KK Chain k, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|YY Chain y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|I Chain I, Mouse Constitutive 20s Proteasome
pdb|3UNE|W Chain W, Mouse Constitutive 20s Proteasome
pdb|3UNE|KK Chain k, Mouse Constitutive 20s Proteasome
pdb|3UNE|YY Chain y, Mouse Constitutive 20s Proteasome
pdb|3UNF|I Chain I, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|W Chain W, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|I Chain I, Mouse 20s Immunoproteasome
pdb|3UNH|W Chain W, Mouse 20s Immunoproteasome
Length = 205
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G + IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGID-GTGKGGVYSYDP 130
L+ +N +G+ + M++ LLYE+R PYY + ++ G+D T K + S D
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 131 VGHCEKVA--YRLHGTSAKFMLASMSYLLSP 159
+G C V + + GT ++ M L P
Sbjct: 127 IG-CPMVTDDFVVSGTCSEQMYGMCESLWEP 156
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T + + D ++A++ R++ I S KI+++ ++ A+ +G++ D+ + ++
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
E N + + ++ A + S LL R FPY VQ+L+ GID GK +YS DP+G
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK-SIYSIDPIG 118
>pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|W Chain W, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|I Chain I, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|W Chain W, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|I Chain I, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|W Chain W, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|I Chain I, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|W Chain W, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|I Chain I, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|W Chain W, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|3 Chain 3, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|J Chain J, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 205
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMAD--SLEVV 69
+GG V+A+ G D IA D R S VSN KIF +GI+G D +L +
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEM 66
Query: 70 SRLQAEINRSAEAKG-QPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDG-TGKGGVYS 127
R + + + E + +P + +++S LYERR PY+V ++ GI+ +GK +
Sbjct: 67 FRYKTNLYKLKEERAIEPETF---TQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 123
Query: 128 YDPVGHCEKVA-YRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
+D +G ++ + + GT++ + L P D + I+ AL
Sbjct: 124 FDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQAL 171
>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|I Chain I, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|W Chain W, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|I Chain I, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|P Chain P, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|I Chain I, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|W Chain W, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|I Chain I, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|W Chain W, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|I Chain I, Proteasome Inhibition By Fellutamide B
pdb|3D29|W Chain W, Proteasome Inhibition By Fellutamide B
pdb|3E47|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|I Chain I, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|W Chain W, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|J Chain J, Proteasome Activator Complex
pdb|1VSY|X Chain X, Proteasome Activator Complex
pdb|3L5Q|N Chain N, Proteasome Activator Complex
pdb|3L5Q|Z Chain Z, Proteasome Activator Complex
pdb|3MG4|I Chain I, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|W Chain W, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|I Chain I, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|W Chain W, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|I Chain I, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|W Chain W, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|I Chain I, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|W Chain W, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|I Chain I, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|W Chain W, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|I Chain I, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|W Chain W, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|I Chain I, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|W Chain W, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|I Chain I, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|W Chain W, 20s Yeast Proteasome In Complex With Glidobactin
Length = 204
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMAD--SLEVV 69
+GG V+A+ G D IA D R S VSN KIF +GI+G D +L +
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEM 65
Query: 70 SRLQAEINRSAEAKG-QPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDG-TGKGGVYS 127
R + + + E + +P + +++S LYERR PY+V ++ GI+ +GK +
Sbjct: 66 FRYKTNLYKLKEERAIEPETF---TQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 122
Query: 128 YDPVGHCEKVA-YRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
+D +G ++ + + GT++ + L P D + I+ AL
Sbjct: 123 FDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQAL 170
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T + + D ++A+D R+S + K++++ + A+ I+G++ D+ +V L A
Sbjct: 3 TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIA 62
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
E G+ + A +LS +L+ R+FP+ Q+++ G D ++S DP+G
Sbjct: 63 EAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLG 120
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 2/164 (1%)
Query: 16 VMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAE 75
++ I GPD+ L+ASD ++SN + ++ K+F++ + + G D+++ +Q
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 76 INRSAEAKGQPLSLPGTAEMLSLLLYE--RRIFPYYVQVLLVGIDGTGKGGVYSYDPVGH 133
+ G LS A L + R PY+V +LL G D +Y D +
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAA 123
Query: 134 CEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
K + HG A L+ + +P S +++ LEEL
Sbjct: 124 LAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEEL 167
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 2/164 (1%)
Query: 16 VMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAE 75
++ I GPD+ L+ASD ++SN + ++ K+F++ + + G D+++ +Q
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 76 INRSAEAKGQPLSLPGTAEMLSLLLYE--RRIFPYYVQVLLVGIDGTGKGGVYSYDPVGH 133
+ G LS A L + R PY+V +LL G D +Y D +
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAA 123
Query: 134 CEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
K + HG A L+ + +P S +++ LEEL
Sbjct: 124 LAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEEL 167
>pdb|2H6J|H Chain H, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|I Chain I, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|J Chain J, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|K Chain K, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|L Chain L, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|M Chain M, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|N Chain N, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 294
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
HG T++A+ L+A D R++ I S + K++ +A GI+G ++E+V
Sbjct: 64 HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRL 123
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYER--------RIFPYYVQVLLVGIDGTGKG 123
E+ + +G PL+ G A L+ ++ + P V L D + G
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 124 GVYSYDPVG--HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
+ SYD VG + E+ Y G+ + LA+ S L Y + D + A+E L
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGS---LAAKSALKKIYSPDSDEETALRAAIESL 236
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADS 65
+ ++ G T + I D ++A++ R + I+ N K+F++ T + I+G + D+
Sbjct: 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDA 60
Query: 66 LEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGV 125
+V ++AE+ + + + A +LS +L + + PY VQ+L+ GID V
Sbjct: 61 QVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPH--V 118
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFM 149
+S D G + Y G+ + F+
Sbjct: 119 FSIDAAGGSVEDIYASTGSGSPFV 142
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADS 65
+ ++ G T + I D ++A++ R + I+ N K+F++ T + I+G + D+
Sbjct: 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDA 60
Query: 66 LEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGV 125
+V ++AE+ + + + A +LS +L + + PY VQ+L+ GID V
Sbjct: 61 QVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPH--V 118
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFM 149
+S D G + Y G+ + F+
Sbjct: 119 FSIDAAGGSVEDIYASTGSGSPFV 142
>pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|J Chain J, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|K Chain K, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|L Chain L, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|M Chain M, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|N Chain N, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 294
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
HG T++A+ L+A D R++ I S + ++ +A GI+G ++E+V
Sbjct: 64 HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRL 123
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYER--------RIFPYYVQVLLVGIDGTGKG 123
E+ + +G PL+ G A L+ ++ + P V L D + G
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 124 GVYSYDPVG--HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
+ SYD VG + E+ Y G+ + F +++ + SP + D + A+E L
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP---DSDEETALRAAIESL 236
>pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome
pdb|1Q5Q|I Chain I, The Rhodococcus 20s Proteasome
pdb|1Q5Q|J Chain J, The Rhodococcus 20s Proteasome
pdb|1Q5Q|K Chain K, The Rhodococcus 20s Proteasome
pdb|1Q5Q|L Chain L, The Rhodococcus 20s Proteasome
pdb|1Q5Q|M Chain M, The Rhodococcus 20s Proteasome
pdb|1Q5Q|N Chain N, The Rhodococcus 20s Proteasome
Length = 235
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++A+ L+A D R++ I S + K++ +A GI+G ++E+V
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYER--------RIFPYYVQVLLVGIDGTGKGGVY 126
E+ + +G PL+ G A L+ ++ + P V L D + G +
Sbjct: 62 ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 127 SYDPVG--HCEKVAYRLHGTSAKFMLASMSYLLSPYESE 163
SYD VG + E+ Y G+ + F +++ + SP E
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T + I D ++A++ R + I+ N K+F++ T + I+G + D+ +V ++A
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
E+ + + + A +LS +L + + PY VQ+L+ GID V+S D G
Sbjct: 62 ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPH--VFSIDAAGGS 119
Query: 135 EKVAYRLHGTSAKFM 149
+ Y G+ + F+
Sbjct: 120 VEDIYASTGSGSPFV 134
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 2/167 (1%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V G ++MA+ D ++ +D+R+++ I + K+ R+ ++ SG+ AD+ +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYD 129
+Q + G P S A + L YE + +++ G D KG VY+
Sbjct: 66 DIVQYHLELYTSQYGTP-STETAASVFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIP 123
Query: 130 PVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176
G K+ Y + G+ + F+ S+ + D I +L +
Sbjct: 124 LGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQ 170
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 2/167 (1%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V G ++MA+ D ++ +D+R+++ I + K+ R+ ++ SG+ AD+ +
Sbjct: 16 VSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 75
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYD 129
+Q + G P S A + L YE + +++ G D KG VY+
Sbjct: 76 DIVQYHLELYTSQYGTP-STETAASVFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIP 133
Query: 130 PVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176
G K+ Y + G+ + F+ S+ + D I +L +
Sbjct: 134 LGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQ 180
>pdb|3MKA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
Length = 291
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
HG T++A+ P ++A D RS+ I + K++ + TA GI+G A ++E
Sbjct: 56 HGATIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARL 115
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVL----------LVGIDGTG 121
E+ + +G PL+ G L++++ R +Q L + D
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMV--RGNLAAAMQGLLALPLLAGYDIHASDPQS 173
Query: 122 KGGVYSYDPVG--HCEKVAYRLHGTSAKFMLASMSYLLS 158
G + S+D G + E+ Y+ G+ + F +SM L S
Sbjct: 174 AGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS 212
>pdb|2JAY|A Chain A, Proteasome Beta Subunit Prcb From Mycobacterium
Tuberculosis
Length = 291
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
HG T++A+ P ++A D RS+ I + K++ + TA GI+G A ++E
Sbjct: 56 HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARL 115
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVL----------LVGIDGTG 121
E+ + +G PL+ G L++++ R +Q L + D
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMV--RGNLAAAMQGLLALPLLAGYDIHASDPQS 173
Query: 122 KGGVYSYDPVG--HCEKVAYRLHGTSAKFMLASMSYLLS 158
G + S+D G + E+ Y+ G+ + F +SM L S
Sbjct: 174 AGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS 212
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
++MA+ D ++ +D+R+++ I + K+ R+ ++ SG+ AD+ + +Q
Sbjct: 2 SIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
+ G P S A + L YE + +++ G D KG VY+ G
Sbjct: 62 HLELYTSQYGTP-STETAASVFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLGGSV 119
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176
K+ Y + G+ + F+ S+ + D I +L +
Sbjct: 120 HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQ 161
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
++MA+ D ++ +D+R+++ I + K+ R+ ++ SG+ AD+ + +Q
Sbjct: 2 SIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
+ G P S A + L YE + +++ G D KG VY+ G
Sbjct: 62 HLELYTSQYGTP-STETAASVFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLGGSV 119
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176
K+ Y + G+ + F+ S+ + D I +L +
Sbjct: 120 HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQ 161
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 18/133 (13%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G T + IA D ++A D R +S + + + KIF++ + A SG +AD+ ++
Sbjct: 35 VRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIE-KIFQIDDHVAAATSGLVADARVLI 93
Query: 70 --SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR--------IFPYYVQVLLVGIDG 119
+RL+A+I R G+ +S+ EML+ + + + + P+ V +L+ GID
Sbjct: 94 DRARLEAQIYRL--TYGEEISI----EMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID- 146
Query: 120 TGKGGVYSYDPVG 132
+ ++ DP G
Sbjct: 147 KNEARLFETDPSG 159
>pdb|2FHG|H Chain H, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|C Chain C, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|E Chain E, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|G Chain G, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|J Chain J, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|L Chain L, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|N Chain N, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|P Chain P, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|R Chain R, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|T Chain T, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|V Chain V, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|X Chain X, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|Z Chain Z, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|2 Chain 2, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHH|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|3HFA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3MFE|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MI0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3KRD|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
Length = 240
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++A+ P ++A D RS+ I + K++ + TA GI+G A ++E
Sbjct: 2 TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVL----------LVGIDGTGKGG 124
E+ + +G PL+ G L++++ R +Q L + D G
Sbjct: 62 ELEHYEKLEGVPLTFAGKINRLAIMV--RGNLAAAMQGLLALPLLAGYDIHASDPQSAGR 119
Query: 125 VYSYDPVG--HCEKVAYRLHGTSAKFMLASMSYLLS 158
+ S+D G + E+ Y+ G+ + F +SM L S
Sbjct: 120 IVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS 155
>pdb|3H6F|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6I|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3HF9|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|HH Chain h, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|CC Chain c, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|EE Chain e, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|GG Chain g, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|JJ Chain j, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|LL Chain l, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|NN Chain n, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|PP Chain p, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|RR Chain r, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|TT Chain t, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|VV Chain v, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|XX Chain x, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|ZZ Chain z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|4 Chain 4, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3MFE|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
Length = 240
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++A+ P ++A D RS+ I + K++ + TA GI+G A ++E
Sbjct: 2 TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVL----------LVGIDGTGKGG 124
E+ + +G PL+ G L++++ R +Q L + D G
Sbjct: 62 ELEHYEKLEGVPLTFAGKINRLAIMV--RGNLAAAMQGLLALPLLAGYDIHASDPQSAGR 119
Query: 125 VYSYDPVG--HCEKVAYRLHGTSAKFMLASMSYLLS 158
+ S+D G + E+ Y+ G+ + F +SM L S
Sbjct: 120 IVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS 155
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 16 VMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAE 75
++ I D ++AS + +++ ++ K +L T + +G D+++ +QA
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 76 INRSAEAKGQPLSLPGTAEMLSLLLYE--RRIFPYYVQVLLVGIDGT-GKGGVYSYDPVG 132
I + + LS + + L + R PY V VL+ G D K +Y D +G
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123
Query: 133 HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
++ Y HG S + + + + P + + D++ + ++EL
Sbjct: 124 TKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQEL 168
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G T + I + ++ +D R S + ++ KI+++ SG +AD+ ++
Sbjct: 22 VKRGATAIGIKCKEGVILIADKRVGSK-LLEADTIEKIYKIDEHICAATSGLVADARVLI 80
Query: 70 --SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR----IFPYYVQVLLVGIDGTGKG 123
+R++A+INR +P+++ A+ + + + P+ V +L+ G+D K
Sbjct: 81 DRARIEAQINRL--TYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPK- 137
Query: 124 GVYSYDPVG 132
+Y DP G
Sbjct: 138 -LYETDPSG 145
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 8/161 (4%)
Query: 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVS 70
Q G T +A+ G D A+I + + + + S+ +F++ ++G ADS V
Sbjct: 34 QGGLTSVAVRGKDCAVIVTQ-KKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQ 92
Query: 71 RLQAEINRSAEAKGQPLSL----PGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVY 126
R + E G + + A++ + + P ++L+GID VY
Sbjct: 93 RARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVY 152
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYT 167
DP G+ ++ K S S+L + +FD+T
Sbjct: 153 KCDPAGY--YCGFKATAAGVK-QTESTSFLEKKVKKKFDWT 190
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 8/161 (4%)
Query: 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVS 70
Q G T +A+ G D A+I + + + + S+ +F++ ++G ADS V
Sbjct: 34 QGGLTSVAVRGKDCAVIVTQ-KKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQ 92
Query: 71 RLQAEINRSAEAKGQPLSL----PGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVY 126
R + E G + + A++ + + P ++L+GID VY
Sbjct: 93 RARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVY 152
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYT 167
DP G+ ++ K S S+L + +FD+T
Sbjct: 153 KCDPAGY--YCGFKATAAGVK-QTESTSFLEKKVKKKFDWT 190
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 12/174 (6%)
Query: 7 EHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSL 66
+ V+ G T + + G D ++ + +S + KI L + + +G AD+
Sbjct: 23 QEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQD-ERTVRKICALDDNVCMAFAGLTADAR 81
Query: 67 EVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYE------RRIFPYYVQVLLVGIDGT 120
V++R + E P+++ ++ L RR P+ + L+VG D
Sbjct: 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRR--PFGISALIVGFDFD 139
Query: 121 GKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
G +Y DP G G AK + +L Y E TD +T+ L
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAK---SVREFLEKNYTDEAIETDDLTIKL 190
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
G T++ + + +IA+DTRS+ + N K+ R+ + +G AD+ V +
Sbjct: 29 GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLI 88
Query: 73 QAEINRSAEAKGQPLSLPGTAEMLS--LLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDP 130
+ I + + + +ML L Y+ I Y +++ G+D TG ++S
Sbjct: 89 GSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAY---LIVAGVDPTGS-HLFSIHA 144
Query: 131 VGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
G + V Y L S LA+M+ L S ++ + + I +A + +
Sbjct: 145 HGSTD-VGYYLSLGSGS--LAAMAVLESHWKQDLTKEEAIKLASDAI 188
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 75/175 (42%), Gaps = 22/175 (12%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G T + I + ++ +D R S + + KI+++ SG +AD+ ++
Sbjct: 31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLI 89
Query: 70 --SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR--------IFPYYVQVLLVGIDG 119
+R++A+INR +P T + L+ + + + + P+ V +L+ G++
Sbjct: 90 DRARIEAQINRLT------YDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE 143
Query: 120 TGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
K +Y DP G + Y+ M A + Y + + D + + L
Sbjct: 144 VPK--LYETDPSGAL--LEYKATAIGMGRM-AVTEFFEKEYRDDLSFDDAMVLGL 193
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 12/174 (6%)
Query: 7 EHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSL 66
+ V+ G T + + G D ++ + +S + KI L + + +G AD+
Sbjct: 23 QEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQD-ERTVRKICALDDNVCMAFAGLTADAR 81
Query: 67 EVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYE------RRIFPYYVQVLLVGIDGT 120
V++R + E P+++ ++ L RR P+ + L+VG D
Sbjct: 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRR--PFGISALIVGFDFD 139
Query: 121 GKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
G +Y DP G G AK + +L Y + TD +T+ L
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAK---SVREFLEKNYTDDAIETDDLTIKL 190
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++ + + +IA+DTRS+ + N K+ R+ + +G AD+ V + +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLS--LLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
I + + + +ML L Y+ I Y +++ G+D TG ++S G
Sbjct: 62 NIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAY---LIVAGVDPTGS-HLFSIHAHG 117
Query: 133 HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173
+ V Y L S LA+M+ L S ++ + + I +A
Sbjct: 118 STD-VGYYLSLGSGS--LAAMAVLESHWKQDLTKEEAIKLA 155
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++ + + +IA+DTRS+ + N K+ R+ + +G AD+ V + +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLS--LLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
I + + + +ML L Y+ I Y +++ G+D TG ++S G
Sbjct: 62 NIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAY---LIVAGVDPTGS-HLFSIHAHG 117
Query: 133 HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
+ V Y L S LA+M+ L S ++ + + I +A + +
Sbjct: 118 STD-VGYYLSLGSGS--LAAMAVLESHWKQDLTKEEAIKLASDAI 159
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G + + A++ + R+ S ++ +Q KI + N + I+G AD+ +
Sbjct: 29 VKQGSATVGLKSKTHAVLVALKRAQSE---LAAHQKKILHVDNHIGISIAGLTADARLLC 85
Query: 70 SRLQAEINRSAEAKGQPL------SLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTG 121
+ ++ E S +PL SL G+ + Y RR PY V +L+ G D G
Sbjct: 86 NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR--PYGVGLLIAGYDDMG 141
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G + + A++ + R+ S ++ +Q KI + N + I+G AD+ +
Sbjct: 29 VKQGSATVGLKSKTHAVLVALKRAQSE---LAAHQKKILHVDNHIGISIAGLTADARLLC 85
Query: 70 SRLQAEINRSAEAKGQPL------SLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTG 121
+ ++ E S +PL SL G+ + Y RR PY V +L+ G D G
Sbjct: 86 NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR--PYGVGLLIAGYDDMG 141
>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|2 Chain 2, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|M Chain M, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|1 Chain 1, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|M Chain M, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|T Chain T, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|M Chain M, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|1 Chain 1, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|M Chain M, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|1 Chain 1, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|M Chain M, Proteasome Inhibition By Fellutamide B
pdb|3D29|1 Chain 1, Proteasome Inhibition By Fellutamide B
pdb|3E47|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|M Chain M, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|1 Chain 1, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|N Chain N, Proteasome Activator Complex
pdb|1VSY|2 Chain 2, Proteasome Activator Complex
pdb|3L5Q|R Chain R, Proteasome Activator Complex
pdb|3L5Q|4 Chain 4, Proteasome Activator Complex
pdb|3MG4|M Chain M, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|1 Chain 1, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|M Chain M, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|1 Chain 1, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|M Chain M, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|1 Chain 1, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|M Chain M, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|1 Chain 1, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|M Chain M, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|1 Chain 1, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|M Chain M, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|AA Chain a, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|N Chain N, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|M Chain M, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|AA Chain a, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|M Chain M, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|AA Chain a, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 233
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
G +V+++ + +IA+D S + N ++ + + T VGISG+++D ++ + RL
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISD-MQHIERL 66
Query: 73 QAEINRSAEAKGQPLSLPGTA-------EMLSLLLYERR--IFPYYVQVLLVGIDGTG 121
++ + A PL+ A E L+ ++Y+RR + P + +++ G+ G
Sbjct: 67 LKDL-VTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 123
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 7 EHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSL 66
+ V+ G T + + G D ++ +S + KI L + + +G AD+
Sbjct: 23 QEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQD-ERTVRKICALDDNVCMAFAGLTADAR 81
Query: 67 EVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYE------RRIFPYYVQVLLVGIDGT 120
V++R + E P+++ ++ L RR P+ + L+VG D
Sbjct: 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRR--PFGISALIVGFDFD 139
Query: 121 GKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
G +Y DP G G AK + +L Y + TD +T+ L
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAK---SVREFLEKNYTDDAIETDDLTIKL 190
>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|1 Chain 1, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|M Chain M, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|0 Chain 0, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|M Chain M, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|0 Chain 0, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|7 Chain 7, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 266
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
G +V+++ + +IA+D S + N ++ + + T VGISG+++D ++ + RL
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISD-MQHIERL 99
Query: 73 QAEINRSAEAKGQPLSLPGTA-------EMLSLLLYERR--IFPYYVQVLLVGIDGTG 121
++ + A PL+ A E L+ ++Y+RR + P + +++ G+ G
Sbjct: 100 LKDL-VTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 156
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 15/178 (8%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ H GT + I D ++A++ + +S + K+++L ++ AV ++G AD+ ++
Sbjct: 16 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 75
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR--------IFPYYVQVLLVGIDGTG 121
+ A I+ K +P E+L L + + + P+ V + G D
Sbjct: 76 N--TARIHAQNYLKTYNEDIP--VEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRY 131
Query: 122 KGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTP 179
+Y+ +P G+ ++ A A+ + L Y+ + D I +AL+ L+
Sbjct: 132 GYQLYTSNPSGNY--TGWKAISVGAN-TSAAQTLLQMDYKDDMKVDDAIELALKTLSK 186
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 15/178 (8%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ H GT + I D ++A++ + +S + K+++L ++ AV ++G AD+ ++
Sbjct: 19 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 78
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR--------IFPYYVQVLLVGIDGTG 121
+ A I+ K +P E+L L + + + P+ V + G D
Sbjct: 79 N--TARIHAQNYLKTYNEDIP--VEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRY 134
Query: 122 KGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTP 179
+Y+ +P G+ ++ A A+ + L Y+ + D I +AL+ L+
Sbjct: 135 GYQLYTSNPSGNY--TGWKAISVGAN-TSAAQTLLQMDYKDDMKVDDAIELALKTLSK 189
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ H GT + I D ++A++ + +S + K+++L ++ AV ++G AD+ ++
Sbjct: 29 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 88
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR--------IFPYYVQVLLVGIDGTG 121
+ A I+ K +P E+L L + + + P+ V + G D
Sbjct: 89 N--TARIHAQNYLKTYNEDIP--VEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRY 144
Query: 122 KGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVV 181
+Y+ +P G+ ++ A A+ + L Y+ + D I +AL+ L+
Sbjct: 145 GYQLYTSNPSGNY--TGWKAISVGAN-TSAAQTLLQMDYKDDMKVDDAIELALKTLSKTT 201
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ H GT + I D ++A++ + +S + K+++L ++ AV ++G AD+ ++
Sbjct: 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 87
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR--------IFPYYVQVLLVGIDGTG 121
+ A I+ K +P E+L L + + + P+ V + G D
Sbjct: 88 N--TARIHAQNYLKTYNEDIP--VEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRY 143
Query: 122 KGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVV 181
+Y+ +P G+ ++ A A+ + L Y+ + D I +AL+ L+
Sbjct: 144 GYQLYTSNPSGNY--TGWKAISVGAN-TSAAQTLLQMDYKDDMKVDDAIELALKTLSKTT 200
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ H GT + I D ++A++ + +S + K+++L ++ AV ++G AD+ ++
Sbjct: 29 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 88
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR--------IFPYYVQVLLVGIDGTG 121
+ A I+ K +P E+L L + + + P+ V + G D
Sbjct: 89 N--TARIHAQNYLKTYNEDIP--VEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRY 144
Query: 122 KGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVV 181
+Y+ +P G+ ++ A A+ + L Y+ + D I +AL+ L+
Sbjct: 145 GYQLYTSNPSGNY--TGWKAISVGAN-TSAAQTLLQMDYKDDMKVDDAIELALKTLSKTT 201
>pdb|1KYT|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc014)
pdb|1KYT|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc014)
Length = 227
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 55 AVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFP-YYVQVL 113
A+ + GN+ D ++S E RSAE KG L++ L + P Y +
Sbjct: 9 AIDVDGNLTDRDRLISTKAIESIRSAEKKG-----------LTVSLLSGNVIPVVYALKI 57
Query: 114 LVGIDGT--GKGGVYSYDPVGHCEKVAYRLHGTSAKFM 149
+GI+G G+ G +D G +K + GT+ KF+
Sbjct: 58 FLGINGPVFGENGGIXFDNDGSIKKF-FSNEGTN-KFL 93
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 30 DTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89
D R S +V IF N+T A+ + V+R++A +N GQ SL
Sbjct: 44 DARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEMMPYVNRVKATVN------GQVFSL 97
Query: 90 P 90
P
Sbjct: 98 P 98
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 30 DTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89
D R S +V IF N+T A+ + V+R++A +N GQ SL
Sbjct: 44 DARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEMMPYVNRVKATVN------GQVFSL 97
Query: 90 P 90
P
Sbjct: 98 P 98
>pdb|1L6R|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
pdb|1L6R|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
Length = 227
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 55 AVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFP-YYVQVL 113
A+ + GN+ D ++S E RSAE KG L++ L + P Y +
Sbjct: 9 AIDVDGNLTDRDRLISTKAIESIRSAEKKG-----------LTVSLLSGNVIPVVYALKI 57
Query: 114 LVGIDG--TGKGGVYSYDPVGHCEKVAYRLHGTSAKFM 149
+GI+G G+ G +D G +K + GT+ KF+
Sbjct: 58 FLGINGPVFGENGGIMFDNDGSIKKF-FSNEGTN-KFL 93
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 30 DTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89
D R S +V IF N+T A+ + V+R++A +N GQ SL
Sbjct: 44 DARDSETNVMVHVYGPHIFHTDNETVWNYINKHAEMMPYVNRVKATVN------GQVFSL 97
Query: 90 P 90
P
Sbjct: 98 P 98
>pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|2 Chain 2, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 219
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
G +V+ + +IA+D S N +I R+ N T +G SG+ AD + L
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67
Query: 73 -QAEINRSAEAKGQPLSLPGTAEMLSLLLYERR 104
Q I+ G S L+ +Y RR
Sbjct: 68 GQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRR 100
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 44/95 (46%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ HG T +A ++A D+R+++ + S K+ + ++G AD
Sbjct: 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWE 131
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR 104
+ L ++ + + +S+ +++LS L+Y+ +
Sbjct: 132 TWLGSQCRLHELREKERISVAAASKILSNLVYQYK 166
>pdb|2JGP|A Chain A, Structure Of The Tycc5-6 Pcp-C Bidomain Of The Tyrocidine
Synthetase Tycc
Length = 520
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 110 VQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYE 161
+Q L I+ T KG V+S +PV +K AY ++ K M Y+L +E
Sbjct: 70 IQELAAFIEETAKGNVFSIEPV---QKQAYYPVSSAQKRM-----YILDQFE 113
>pdb|3UNB|M Chain M, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|AA Chain a, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|OO Chain o, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|3 Chain 3, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|M Chain M, Mouse Constitutive 20s Proteasome
pdb|3UNE|AA Chain a, Mouse Constitutive 20s Proteasome
pdb|3UNE|OO Chain o, Mouse Constitutive 20s Proteasome
pdb|3UNE|3 Chain 3, Mouse Constitutive 20s Proteasome
pdb|3UNF|M Chain M, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|AA Chain a, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|M Chain M, Mouse 20s Immunoproteasome
pdb|3UNH|AA Chain a, Mouse 20s Immunoproteasome
Length = 219
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
G +V+ + +IA+D S N +I R+ + T +G SG+ AD + L
Sbjct: 8 GTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVL 67
Query: 73 -QAEINRSAEAKGQPLSLPGTAEMLSLLLYERR 104
Q I+ G S L+ +Y RR
Sbjct: 68 GQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRR 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,211,586
Number of Sequences: 62578
Number of extensions: 194429
Number of successful extensions: 447
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 61
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)