BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2800
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 97/172 (56%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GG+++AIAG DFA+IA+DTR SS I S Q K+F+L QT +G +G AD+L +
Sbjct: 25 YESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSL 84
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++ + + ++ A+MLS+ +Y RR FPYYV +L GID GKG VYSY
Sbjct: 85 TGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSY 144
Query: 129 DPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPV 180
DP+GHCEK YR GT+ + + + + D I + E V
Sbjct: 145 DPIGHCEKATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSV 196
>sp|Q9UQY2|PSB6_SCHPO Probable proteasome subunit beta type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pam1 PE=3 SV=1
Length = 225
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 90/149 (60%)
Query: 1 MTEAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISG 60
M+++ + YVQ+GGT +AIAG FA++A DTRS + I + Q ++ + + +G SG
Sbjct: 1 MSQSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASG 60
Query: 61 NMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGT 120
AD+L +V R+Q I+ + + +S A M+ LLY +R FPYYV + GID
Sbjct: 61 FEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKE 120
Query: 121 GKGGVYSYDPVGHCEKVAYRLHGTSAKFM 149
GKG +YS+DPVG E+ R G++A F+
Sbjct: 121 GKGEIYSFDPVGSYEREWCRAGGSAANFI 149
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 1 MTEAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNG-TIVSNNQLKIFRLPNQTAVGIS 59
++ E YV +GGTV+A+AG D+ +IA DTR S G I + KIF+L + + S
Sbjct: 18 ISHGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATS 77
Query: 60 GNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDG 119
G AD++ + RL++ + + G+P+S P A+ LS LY +R FPYY L+ G+D
Sbjct: 78 GMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDE 137
Query: 120 TGKGGVYSYDPVGHCEKVAYRLHGTSAKFML 150
G+G +++YD VG E+V Y G+ + ++
Sbjct: 138 QGEGWIWTYDAVGSHERVKYSSQGSGNQLVI 168
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 89/141 (63%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
YV +GGT++AIAG DFA++ASDTR S +I + + K ++L ++T +G SG D L +
Sbjct: 33 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 92
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++A + + + ++ A MLS +LY RR FPYYV ++ G+D GKG VYS+
Sbjct: 93 TKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 152
Query: 129 DPVGHCEKVAYRLHGTSAKFM 149
DPVG ++ +++ G+++ +
Sbjct: 153 DPVGSYQRDSFKAGGSASAML 173
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 88/141 (62%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGTV+AIAG DF+++ASDTR S +I + + K ++L ++T +G SG D L +
Sbjct: 32 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 91
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++A + + + ++ A MLS +LY RR FPYYV ++ G+D GKG VYS+
Sbjct: 92 TKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSF 151
Query: 129 DPVGHCEKVAYRLHGTSAKFM 149
DPVG ++ +++ G+++ +
Sbjct: 152 DPVGSYQRDSFKAGGSASAML 172
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 87/147 (59%)
Query: 3 EAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNM 62
E Y +GGTV+A+AG DFAL+ASDTR S +I S + K ++L + T +G SG
Sbjct: 23 EHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFH 82
Query: 63 ADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGK 122
D L + ++A + + + ++ A MLS +LY RR FPYYV ++ G+D G+
Sbjct: 83 GDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGR 142
Query: 123 GGVYSYDPVGHCEKVAYRLHGTSAKFM 149
G VYS+DPVG ++ Y+ G+++ +
Sbjct: 143 GAVYSFDPVGSYQRDTYKAGGSASAML 169
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 87/147 (59%)
Query: 3 EAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNM 62
E Y +GGTV+A+AG DFAL+ASDTR S +I S + K ++L + T +G SG
Sbjct: 24 EHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFH 83
Query: 63 ADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGK 122
D L + ++A + + + ++ A MLS +LY RR FPYYV ++ G+D G+
Sbjct: 84 GDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGR 143
Query: 123 GGVYSYDPVGHCEKVAYRLHGTSAKFM 149
G VYS+DPVG ++ Y+ G+++ +
Sbjct: 144 GAVYSFDPVGSYQRDTYKAGGSASAML 170
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 88/141 (62%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGTV+AIAG DF+++ASDTR S +I + + K ++L ++T +G SG D L +
Sbjct: 32 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 91
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++A + + + ++ A MLS +LY RR FPYYV ++ G+D GKG VYS+
Sbjct: 92 TKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 151
Query: 129 DPVGHCEKVAYRLHGTSAKFM 149
DPVG ++ +++ G+++ +
Sbjct: 152 DPVGSYQRDSFKAGGSASAML 172
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 88/141 (62%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGTV+AIAG DF+++ASDTR S +I + + K ++L ++T +G SG D L +
Sbjct: 33 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 92
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++A + + + ++ A MLS +LY RR FPYYV ++ G+D GKG VYS+
Sbjct: 93 TKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 152
Query: 129 DPVGHCEKVAYRLHGTSAKFM 149
DPVG ++ +++ G+++ +
Sbjct: 153 DPVGSYQRDSFKAGGSASAML 173
>sp|P23724|PSB6_YEAST Proteasome subunit beta type-6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE7 PE=1 SV=1
Length = 241
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 3 EAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNM 62
E Y +GGT++ IAG DFA++A DTR+ ++ +I S + K+F + + +G
Sbjct: 18 EHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFA 77
Query: 63 ADSLEVVSRLQAEINR-SAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTG 121
AD +V R + + + + LS+ A + LLY +R FPYYV ++ G+D G
Sbjct: 78 ADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDG 137
Query: 122 KGGVYSYDPVGHCEKVAYRLHGTSAKFML 150
KG VYS+DPVG E+ R G +A ++
Sbjct: 138 KGAVYSFDPVGSYEREQCRAGGAAASLIM 166
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNG-TIVSNNQLKIFRLPNQTAVGISGNMADSLE 67
Y GG+ AI+G +FA++ASDTR + N I++ + KI L + + SG D L+
Sbjct: 47 YSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQ 106
Query: 68 VVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYS 127
+ LQ+ +++ +S+ AE+LS LY RR FPYY +L GID GKG V+S
Sbjct: 107 LKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFS 166
Query: 128 YDPVGHCEKVAYRLHGTS 145
YDP+G E++ Y G +
Sbjct: 167 YDPIGCIERLGYSASGAA 184
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 82/142 (57%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGT +AIAG D+ +IA+DTR S+ +I+S + KI +L ++ + SG AD +
Sbjct: 11 YDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKAL 70
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
L++ + +S P A++LS LY +R FPYY +L G+D GKG V++Y
Sbjct: 71 QKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTY 130
Query: 129 DPVGHCEKVAYRLHGTSAKFML 150
D VG E+V Y G+ + ++
Sbjct: 131 DAVGSYERVGYGAQGSGSTLIM 152
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 77/142 (54%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGT +AIAG D+ ++A+DTR S I++ + KI L ++ A+ SG D +
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
L A + +S P A++LS LY +R FPYY +L G+D GKG V++Y
Sbjct: 69 HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128
Query: 129 DPVGHCEKVAYRLHGTSAKFML 150
D VG E+ Y GT + ++
Sbjct: 129 DAVGSYERTGYSAQGTGSALIM 150
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%)
Query: 3 EAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNM 62
+A Y +GGT +A+AG D+ +IA+DTR S+ I++ + KI +L ++ + SG
Sbjct: 5 QANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQ 64
Query: 63 ADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGK 122
AD + L + + +S P ++LS LY +R FPYY +L G+D GK
Sbjct: 65 ADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGK 124
Query: 123 GGVYSYDPVGHCEKVAYRLHGTSAKFML 150
G V++YD VG E+V Y G+ + ++
Sbjct: 125 GCVFTYDAVGSYERVGYSSQGSGSTLIM 152
>sp|Q9U794|PSB1_TRYBB Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 258
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTI-VSNNQLKIFRLPNQTAVGISGNMADSLE 67
Y +GGT+ AIAG ++ ++ +DTR + + I ++ K+F+L ++ + SG AD L+
Sbjct: 48 YTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQ 107
Query: 68 VVSRLQAEINRSAEAKGQPL-SLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVY 126
+ L+ I G + S A++ S +LY+RR FPYY ++VGID G G Y
Sbjct: 108 LQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGIDEKGAGVCY 167
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLS 158
SYDPVG E Y G+++ F+ + LL+
Sbjct: 168 SYDPVGSTEPFRYGTCGSASSFVEPLLDCLLT 199
>sp|Q47NZ4|PSB_THEFY Proteasome subunit beta OS=Thermobifida fusca (strain YX) GN=prcB
PE=3 SV=1
Length = 282
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 8 HYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLE 67
H T++A+ ++A D R++S I + + K+FR +AVGI+G+ +E
Sbjct: 49 HLTPEATTIVAVVFSGGVVLAGDRRATSGNVIANRDMDKLFRTDEFSAVGIAGSAGIGIE 108
Query: 68 VVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYER---RIFPYYVQVLLVGIDGT-GKG 123
+ Q E+ + +G+PLSL G A L+ ++ + + V LLVG D + G+G
Sbjct: 109 LAKLFQVELEHYEKREGRPLSLEGKANRLATMIRSNLGLAMQGFVVVPLLVGYDTSRGEG 168
Query: 124 GVYSYDPVGHC-EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
++SYDPVG C E+ Y G+ + + ++ L Y + TD +AL+ L
Sbjct: 169 RIFSYDPVGGCYEEHRYHAIGSGSVYAKGALKKL---YRDDLAETDAALVALQAL 220
>sp|Q8SRH6|PSB6_ENCCU Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE7 PE=1 SV=1
Length = 290
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADS 65
+ Y + GT + + DF ++A DTR SS+ I S KIF++ + G +G AD+
Sbjct: 83 FDPYEDNSGTTICLKQGDFIVVAGDTRHSSSMVINSREMSKIFQVGDFLLTG-TGFYADT 141
Query: 66 LEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGV 125
EV ++ EI R E +++ A +LS +LY +R FPYY +L G + GK V
Sbjct: 142 HEVYVKMVYEI-RQYEVD-DSINIHSAANLLSKILYSKRFFPYYSFCVLSGFE-KGKPYV 198
Query: 126 YSYDPVG 132
YSYDP+G
Sbjct: 199 YSYDPIG 205
>sp|A9A2U7|PSB2_NITMS Proteasome subunit beta 2 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB2 PE=3 SV=1
Length = 210
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADS 65
+E + HG T + I D ++ +D R+S+ I +NN +KI ++ + + ++G +AD+
Sbjct: 5 VEEKILHGTTTVGIKAKDGVVLCADMRASAGYFIANNNTMKIQKIDDHAGLTLAGGVADA 64
Query: 66 LEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGV 125
+V L+ N K P+S+ A + SL+ ++ R +P+ +L+ G D G +
Sbjct: 65 QNIVDILRYHSNLHRVEKHGPISIHSLARLCSLIFHQNRGYPFMADILVGGYDAEGP-AL 123
Query: 126 YSYDPVGHCEKVAYRLHGTSA 146
++ D G EK AY G+ +
Sbjct: 124 FNIDMFGSVEKKAYVTTGSGS 144
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1 PE=3
SV=2
Length = 203
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
G T + I D ++A+D R S G I+S N KIF + ++ + +G D +V +
Sbjct: 5 GATALGIRVEDGVVLAADKRMSYGGFILSRNFKKIFVINDRIGIAFAGLYGDMGGLVRIV 64
Query: 73 QAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
+ ++ ++ G+P ++ A+ LS LLY + FP+ V+ ++ GID G+ +Y DP+G
Sbjct: 65 EGQMRLASLETGKPATVRNVAKFLSSLLYSYKFFPFNVEAIVGGIDPGGEPKLYVLDPLG 124
Query: 133 HCEKVAYRLHGTSA 146
+ Y GT A
Sbjct: 125 SIIEEDYVAAGTGA 138
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2
SV=1
Length = 205
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 7 NGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQR 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGID-GTGKGGVYSYDP 130
L+ +N +G+ + M+S LLYERR PYY++ ++ G+D T + + S D
Sbjct: 67 LKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDL 126
Query: 131 VGHCEKVA--YRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
+G C V + + GT ++ M L P D + I+ A+
Sbjct: 127 IG-CPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAM 171
>sp|A0RXV1|PSB2_CENSY Proteasome subunit beta 2 OS=Cenarchaeum symbiosum (strain A)
GN=psmB2 PE=3 SV=2
Length = 210
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADS 65
+E + HG T + I D ++ +D R+S+ I +NN +KI R+ + + ++G +AD+
Sbjct: 5 VEEKILHGTTTVGIKATDGVVLCADMRASAGYFIANNNTMKIQRIDDHAGLTLAGGVADA 64
Query: 66 LEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGV 125
+V L+ + K P+ + A + SL+ ++ R +P+ +L+ G D G +
Sbjct: 65 QNIVDVLRYHASLHRIRKQGPIPIKSLARLTSLIFHQNRGYPFMADILMGGFDAVGP-AL 123
Query: 126 YSYDPVGHCEKVAYRLHGTSA 146
Y+ D G E+ +Y G+ +
Sbjct: 124 YNIDMFGSVEEKSYVTTGSGS 144
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQ 73
GT + I D ++A++ R S ++S + K++R+ ++ + +G MAD + ++
Sbjct: 6 GTTVGIRVSDGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVE 65
Query: 74 AEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGH 133
AE+ + A++LS +LYERR+FPYY ++++ G+D G +YS DP+G
Sbjct: 66 AEMRLYELDSNISPKVWTVAKLLSYILYERRLFPYYAEIVVGGLDEEGS-HLYSLDPIGA 124
Query: 134 CEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
+ Y G+ + ++S + S Y+ + + +++AL+ + +K
Sbjct: 125 IIEDDYVALGSGTQL---AISIVESNYKKDMSLDEALSLALKSVYAAMK 170
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2
Length = 205
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G + IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGID-GTGKGGVYSYDP 130
L+ +N +G+ + M++ LLYE+R PYY + ++ G+D T K + S D
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 131 VGHCEKVA--YRLHGTSAKFMLASMSYLLSP 159
+G C V + + GT A+ M L P
Sbjct: 127 IG-CPMVTDDFVVSGTCAEQMYGMCESLWEP 156
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
G T + + + ++A+DTR+S I + N KI ++ A+ +G++ D L +V L
Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 73 QAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
+AE N G+ +S+ A +L+ +L + FPY L+ G D K ++S D VG
Sbjct: 70 KAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYD--EKPRLFSVDMVG 127
Query: 133 HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
+ Y G+ +F + S L S Y E D I +A++ + +K
Sbjct: 128 GITEDNYAAAGSGMEF---AYSILDSEYREEMSVNDGIKLAVKAINVAIK 174
>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1
SV=1
Length = 205
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G + IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGID-GTGKGGVYSYDP 130
L+ +N +G+ + M++ LLYE+R PYY + ++ G+D T K + S D
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 131 VGHCEKVA--YRLHGTSAKFMLASMSYLLSP 159
+G C V + + GT ++ M L P
Sbjct: 127 IG-CPMVTDDFVVSGTCSEQMYGMCESLWEP 156
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1
Length = 205
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G + IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGID-GTGKGGVYSYDP 130
L+ +N +G+ + M++ LLYE+R PYY + ++ G+D T K + S D
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 131 VGHCEKVA--YRLHGTSAKFMLASMSYLLSP 159
+G C V + + GT ++ M L P
Sbjct: 127 IG-CPMVTDDFVVSGTCSEQMYGMCESLWEP 156
>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3
Length = 205
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G + IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGID-GTGKGGVYSYDP 130
L+ +N +G+ + M++ LLYE+R PYY + ++ G+D T K + S D
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 131 VGHCEKVA--YRLHGTSAKFMLASMSYLLSP 159
+G C V + + GT + M L P
Sbjct: 127 IG-CPMVTDDFVVSGTCTEQMYGMCESLWEP 156
>sp|Q9N9W8|PSB3_GIAIN Proteasome subunit beta type-3 OS=Giardia intestinalis GN=PRSBETA3
PE=2 SV=1
Length = 207
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 12 HGGTVMAIAGPDFALIASDTR-SSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVS 70
+G ++ I G D +A+D R S T+ N+ +IFRL +G++G D L
Sbjct: 8 NGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYR 67
Query: 71 RLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDP 130
+++ + N + + + TA+M+S LY+ R PY++ ++ G + GK + + D
Sbjct: 68 QIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDT 127
Query: 131 VGHCEKVA-YRLHGTSAKFMLASMSYLLSPYESE 163
+G + +++ GT++ F+L + P SE
Sbjct: 128 IGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSE 161
>sp|Q23237|PSB3_CAEEL Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3
PE=1 SV=1
Length = 204
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRL 72
GGTV+A+AG + IASD R T ++ +Q K+ ++ ++ VG++G +D+ V+ ++
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 73 QAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
N + + + +EM+S L Y+ R Y+ + L+ G+D T K + D +G
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 5 MLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMAD 64
M+ V G T + + D ++A++ R++ I S KI+++ ++ A+ +G++ D
Sbjct: 1 MIHDKVFKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYKITDRIAMTTAGSVGD 60
Query: 65 SLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGG 124
+ + ++ E N K + ++ A ++S LL R FPY VQ+L+ G+D TG
Sbjct: 61 AQFLARLIKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGVDKTG-AK 119
Query: 125 VYSYDPVG 132
+YS DP+G
Sbjct: 120 IYSIDPIG 127
>sp|C7R403|PSB_JONDD Proteasome subunit beta OS=Jonesia denitrificans (strain ATCC 14870
/ DSM 20603 / CIP 55134) GN=prcB PE=3 SV=1
Length = 302
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
HG T++A+ + +IA D R++ TI K+F +A+ I+G ++E+V
Sbjct: 49 HGTTIVALEYHNGIIIAGDRRATMGTTIAHREIEKVFAADEHSAIAIAGTAGLAIELVRL 108
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVL-----LVGIDGT-GKGGV 125
Q E+ + +G PLSL G A LS +L R +Q L G D T +G +
Sbjct: 109 FQLELEHYEKIEGTPLSLDGKANRLSTML--RSHLHLALQGLPIVPIFAGWDSTRHQGRL 166
Query: 126 YSYDPV-GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
++YD G E+ + G+ + F +++ L P + D T IT+ALE L
Sbjct: 167 FAYDVTGGRYEEPNFTCAGSGSVFARSALKKLWKP---QLDATRAITIALEAL 216
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 5 MLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMAD 64
M+E G T + I ++A++ R++ I S + KI+R+ + A+ I+G++ D
Sbjct: 1 MMEDKQYKGTTTIGIICDQGVVLATERRATMGNFIASRDAQKIYRITDNAAMTIAGSVGD 60
Query: 65 SLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGG 124
+ LQ E + +S+ + +LS +L E R PYYVQVL+ G+D G
Sbjct: 61 GQRLARILQVEAKLFELRRHGSMSINALSMLLSNILAEMRYAPYYVQVLIGGLDKAGP-K 119
Query: 125 VYSYDPVG 132
+YS DP+G
Sbjct: 120 IYSLDPLG 127
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR- 71
G T + I G + ++A++ R S G I+S K++++ + + ++G AD L+ +S+
Sbjct: 8 GATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFAD-LQAISKI 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPV 131
L+AEI G+ +S+ A +L+ +LY + +P+ + L+ G++ G +Y DP+
Sbjct: 67 LRAEIEYYNIVTGRRISVRAVARLLATILYSYKYYPFLSETLVGGLEADGTAKLYVMDPL 126
Query: 132 GHCEKVAYRLHGTSA 146
G + Y G+ A
Sbjct: 127 GSLIEDDYAAIGSGA 141
>sp|A1RWY6|PSB1_THEPD Proteasome subunit beta 1 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB1 PE=3 SV=1
Length = 200
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 4 AMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMA 63
A L V G T + + G DF ++A+D R+++ I + KI + + A I+G +
Sbjct: 3 ADLRDKVLKGTTTVGLVGKDFVVLAADRRATAGYFIANKQTWKIVEIDSHIAATIAGTVG 62
Query: 64 DSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKG 123
D+ ++V RL+ E G + + A + SL+L++ R VQ+L+ G+D G
Sbjct: 63 DAQQLVDRLRVEARYYKTITGDSMPVKSVATLASLILFQYRPI-LSVQMLIGGVDSDGP- 120
Query: 124 GVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALE 175
++S D +G + Y G+ + + ++S L Y + + + +A++
Sbjct: 121 SLFSVDWLGTVTREKYTATGSGSPY---AVSLLEHEYREDLSLEEAVNLAVK 169
>sp|C9Z4D0|PSB_STRSW Proteasome subunit beta OS=Streptomyces scabies (strain 87.22)
GN=prcB PE=3 SV=1
Length = 281
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
HG T++A+ P ++A D R++ I + K+F +AVGI+G ++E+V
Sbjct: 52 HGTTIVAVTFPGGVVLAGDRRATMGNMIAQRDIEKVFPADEYSAVGIAGTAGLAVEMVKL 111
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYER---RIFPYYVQVLLVGID-GTGKGGVYS 127
Q E+ + +G LSL G A LS ++ + V L G D +G ++S
Sbjct: 112 FQLELEHFEKVEGAQLSLEGKANRLSTMIRSNLGMAMQGLAVVPLFAGYDVDRNRGRIFS 171
Query: 128 YDPV-GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
YD G E+ Y G+ + F +M L SE D T ++ AL
Sbjct: 172 YDVTGGRSEESGYAATGSGSIFARGAMKKLFRADLSEADATTLVVQAL 219
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 4 AMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMA 63
+M+E + G T + + D ++A++ R++ I S KI+++ ++ A+ +G++
Sbjct: 2 SMIEEKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVG 61
Query: 64 DSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKG 123
D+ + ++ E N + + ++ A + S LL R FPY VQ+L+ GID GK
Sbjct: 62 DAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK- 120
Query: 124 GVYSYDPVG 132
+YS DP+G
Sbjct: 121 SIYSIDPIG 129
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 5 MLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMAD 64
M E G T + I D ++A++ R++ I S K++++ ++ + +G + D
Sbjct: 1 MSEAETLKGTTTIGIVFKDGIILATEKRATMGSMIASKRAKKVYQVADRIGMTTAGGVGD 60
Query: 65 SLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGG 124
+ ++ + E N +G+ +S+ ++ +LS L + R +PYYVQ+L+ G+D TG
Sbjct: 61 AQQLARIMSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQLLVGGVDATGP-S 119
Query: 125 VYSYDPVGHCEK 136
VYS D +G +
Sbjct: 120 VYSVDAMGGATR 131
>sp|A4WMZ0|PSB2_PYRAR Proteasome subunit beta 2 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB2 PE=3 SV=1
Length = 203
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
VQ G T + I D ++A++ R S +S+ K+F + ++ A+ +G +AD ++ +
Sbjct: 5 VQIGATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGRKVFVIDDKLAIASAGIIAD-MQSL 63
Query: 70 SRLQAEINRSA---EAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVY 126
+R+ +IN A E + +P ++ A++LS++++ RR P++ +VL+ G+D G +
Sbjct: 64 ARI-VKINAKAYELETRKKP-TVRSMAKLLSVIMFSRRYMPFFAEVLVGGVDEEG-SHLI 120
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
DP+G + Y GT AK ++S L + Y + D +A++ L ++
Sbjct: 121 VMDPLGSLIEDNYAALGTGAKL---AISVLDTGYREDITLQDAKKLAVKALKAAIE 173
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
G T + I D ++A+D R+S + + N KI ++ A+ +G++ D L +V
Sbjct: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPV 131
L+AE G+ +S+ A +L+ +L R+ PY L+ G D K +YS D +
Sbjct: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFD--EKPRLYSVDMM 126
Query: 132 GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
G + Y G+ +F + S L S Y + + I +A+E + +K
Sbjct: 127 GGITEDKYVAAGSGMEF---AYSVLDSEYREDLKVREGIKIAVEAINSAIK 174
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
G T + I D ++A+D R+S I + N KI ++ A+ +G++ D L +V
Sbjct: 9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPV 131
L+AE G+ +S+ A +L+ ++ + FPY L+ G D K +YS D V
Sbjct: 69 LRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMV 126
Query: 132 GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
G + Y G+ +F + S L S Y+ + I +A++ + +K
Sbjct: 127 GGITEDKYATAGSGMEF---AYSILDSEYKDNLTLEEGIKLAVKAINTAIK 174
>sp|A0LU50|PSB_ACIC1 Proteasome subunit beta OS=Acidothermus cellulolyticus (strain ATCC
43068 / 11B) GN=prcB PE=3 SV=1
Length = 290
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V HG T++A+A ++A D R++ I + K+F+ + VGI+G+ +LEVV
Sbjct: 55 VPHGTTIVAVAYQGGVVMAGDRRATMGNVIAQRDIEKVFQTDEHSCVGIAGSAGIALEVV 114
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYER--------RIFPYYVQVLLVGIDGTG 121
Q E+ + +G LSL G A L++++ + P + L D
Sbjct: 115 RLFQVELEHYEKLQGTTLSLEGKANRLAMMIRANLPMALQGLAVVPLFAGYDLFADDPQR 174
Query: 122 KGGVYSYDPV-GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
G ++S+D G E+ ++ G+ + F ++ L + +FD + +E L
Sbjct: 175 AGRIFSFDVTGGRYEEHSFHAVGSGSTFARGALKKL---FRDDFDEPHAVRTCIEAL 228
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
G T + + D ++A+D R+S I K++++ + A+ I+G++ D+ +V
Sbjct: 5 KGTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRA 64
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPV 131
L AE G+ +S A +LS +L+ R+FP+ Q+++ G D T ++S DP+
Sbjct: 65 LIAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKLFSLDPL 124
Query: 132 G 132
G
Sbjct: 125 G 125
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 7 EHY-VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADS 65
EH V+ G T + I ++A++ R++ I S K+ + ++ + I+G + D+
Sbjct: 4 EHQDVKTGTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDA 63
Query: 66 LEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGV 125
++V + E N +GQ +S+ A +LS L + R PYYVQ+L+ G+D +G V
Sbjct: 64 QQLVRIINVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQLLVGGVDTSGP-SV 122
Query: 126 YSYDPVG 132
YS D G
Sbjct: 123 YSVDAAG 129
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
G T + I + ++A++ R++ I S + KI++L + A+ I+G++ D +
Sbjct: 7 KGTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDGQRLARM 66
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPV 131
LQAE + P+S+ + +LS LL+E RIF Y+QVL+ G+D +G ++S DP
Sbjct: 67 LQAESKLFELRRHGPMSINALSMLLSNLLWEYRIF--YIQVLVGGVDKSGP-KLFSLDPA 123
Query: 132 G 132
G
Sbjct: 124 G 124
>sp|D1A3V2|PSB2_THECD Proteasome subunit beta 2 OS=Thermomonospora curvata (strain ATCC
19995 / DSM 43183 / JCM 3096 / NCIMB 10081) GN=prcB2
PE=3 SV=1
Length = 280
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ HG T++A+ P+ ++A D R++S I + K+ R +AV ++G + +LE++
Sbjct: 49 IPHGTTIVAVRYPEGVMLAGDRRATSGNLIAQKDLEKVHRADEHSAVAMAGTVGLALEMI 108
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLV-----GID-GTGKG 123
LQ E+ + + LSLPG A L ++ R + +Q L V G D G G
Sbjct: 109 RLLQVELEHYEKLQSAKLSLPGKARRLGAVI--RANLAHAMQGLAVVPVFAGYDLDAGVG 166
Query: 124 GVYSYDPVGHC-EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDV 169
+Y+YD G E + G+ + F ++ L P +E + V
Sbjct: 167 RIYNYDITGMPQESRDFHAEGSGSPFARGALKKLYRPDLTEAEAAAV 213
>sp|A0B5B1|PSB_METTP Proteasome subunit beta OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=psmB PE=3 SV=1
Length = 207
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 5 MLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMAD 64
M+E + G T + I ++AS++R++ I S KI+++ + + +G + D
Sbjct: 1 MVEAF--KGTTTVGIVCDGGVVLASESRATMGSFIASRTAKKIYQIDDLVGLTTAGVVGD 58
Query: 65 SLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGG 124
+ +V +QAE +G+PL++ +LS +L RR FP+ VQ+++ G+D G
Sbjct: 59 AQALVRMIQAEARLYRMQRGEPLTIKAITSLLSNILSARRYFPFLVQLVVGGVDKMGP-K 117
Query: 125 VYSYDPVG 132
++S D +G
Sbjct: 118 IFSLDALG 125
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 4/169 (2%)
Query: 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQ 73
GTV+ I + +IA + R + +G ++S N K+ + +G +G + D+ ++ L+
Sbjct: 18 GTVLGIKAVNGVVIAGEKRLTYDGYVLSKNTRKVHPITKHVGIGFAGLVGDAQFIIRALR 77
Query: 74 AEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGH 133
E G+ + + G A++LSL+LY ++ P +V++ G D G +Y DPVG
Sbjct: 78 MEAENYELQLGREIRVRGLAKILSLILYSYKLAPLMTEVVVGGFDEKGP-QIYVLDPVGS 136
Query: 134 CEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
+ Y G+ L + Y + D + +A+ + ++
Sbjct: 137 LIEDKYVALGSGGPIALGIIE---KEYREDIDVDEAEKLAVSAIREAIE 182
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
VQ G T + I D ++A++ R S +S+ K+F + ++ A+ +G +AD +
Sbjct: 5 VQIGATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTLA 64
Query: 70 SRLQAEI-NRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
L+ + + E + +P ++ A++LS++++ RR+ P+Y +VL+ G+D G +
Sbjct: 65 RILKLNVMSYELEVRKKP-TVRAMAKLLSIIMFSRRLLPFYAEVLVGGVDEEGP-HLIVM 122
Query: 129 DPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
DP+G + Y GT AK ++S L + Y + + +A++ + ++
Sbjct: 123 DPLGSLIEDNYAALGTGAKL---AVSLLDATYRPDISLQEAKKLAVQAIKAAIE 173
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ G T + + ++A++ R++ I S KI+++ + + +G + D+ ++V
Sbjct: 8 IMKGTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQQLV 67
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYD 129
LQ E N +G+ +S+ + +LS L + R +PYYVQ+L+ G D G VYS D
Sbjct: 68 RILQVECNLFEMRRGKTMSVGAASTLLSNYLNQNRYYPYYVQLLMGGFDDEGP-SVYSVD 126
Query: 130 PVGHCEK 136
+G K
Sbjct: 127 AMGGATK 133
>sp|Q7AKQ5|PSB_STRCO Proteasome subunit beta OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=prcB PE=1 SV=1
Length = 281
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
HG T++A+ P ++A D R++ I + K+F +AVGI+G ++E+V
Sbjct: 52 HGTTIVAVTFPGGVVLAGDRRATMGNMIAQRDIEKVFPADEYSAVGIAGTAGLAVEMVKL 111
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYER---RIFPYYVQVLLVGID-GTGKGGVYS 127
Q E+ + +G LSL G A LS ++ + V L G D G+G ++S
Sbjct: 112 FQLELEHFEKVEGAQLSLEGKANRLSTMIRSNLGMAMQGLAVVPLFAGYDVDRGRGRIFS 171
Query: 128 YDPV-GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
YD G E+ + G+ + F +M L +E T ++ AL
Sbjct: 172 YDVTGGRSEERHFATTGSGSVFARGAMKKLFRDDLTEEQATTLVVQAL 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,475,669
Number of Sequences: 539616
Number of extensions: 2452246
Number of successful extensions: 6715
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 228
Number of HSP's that attempted gapping in prelim test: 6414
Number of HSP's gapped (non-prelim): 458
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)