Query psy2800
Match_columns 184
No_of_seqs 117 out of 1024
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:17:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 1.8E-47 4E-52 301.0 22.3 175 6-180 1-184 (212)
2 cd03759 proteasome_beta_type_3 100.0 2.1E-46 4.6E-51 291.5 22.5 169 12-180 2-171 (195)
3 cd03761 proteasome_beta_type_5 100.0 8.2E-45 1.8E-49 281.1 22.4 166 14-180 1-166 (188)
4 COG0638 PRE1 20S proteasome, a 100.0 6.6E-45 1.4E-49 290.4 21.4 172 8-180 25-198 (236)
5 cd03760 proteasome_beta_type_4 100.0 2E-44 4.4E-49 280.8 22.1 170 12-181 1-175 (197)
6 cd03758 proteasome_beta_type_2 100.0 3.5E-44 7.5E-49 278.7 22.9 167 14-180 2-170 (193)
7 TIGR03634 arc_protsome_B prote 100.0 3.7E-44 8E-49 276.6 22.5 167 13-180 1-167 (185)
8 cd03755 proteasome_alpha_type_ 100.0 3E-43 6.5E-48 276.1 21.4 168 11-179 25-196 (207)
9 cd03764 proteasome_beta_archea 100.0 5.8E-43 1.3E-47 270.6 22.3 166 14-180 1-166 (188)
10 cd03752 proteasome_alpha_type_ 100.0 4.8E-43 1E-47 276.1 21.9 172 11-182 27-202 (213)
11 PTZ00488 Proteasome subunit be 100.0 5.6E-43 1.2E-47 280.8 22.6 170 11-181 37-206 (247)
12 cd01912 proteasome_beta protea 100.0 1.4E-42 3E-47 268.4 22.6 167 14-180 1-167 (189)
13 TIGR03690 20S_bact_beta protea 100.0 1.3E-42 2.8E-47 274.7 22.5 169 12-180 1-174 (219)
14 cd03750 proteasome_alpha_type_ 100.0 1.1E-42 2.3E-47 276.6 20.9 167 11-179 25-195 (227)
15 cd03762 proteasome_beta_type_6 100.0 2.3E-42 4.9E-47 267.3 22.1 166 14-180 1-166 (188)
16 cd03751 proteasome_alpha_type_ 100.0 2.1E-42 4.6E-47 272.2 21.2 165 11-177 28-196 (212)
17 cd03763 proteasome_beta_type_7 100.0 4.8E-42 1E-46 265.8 21.8 165 14-180 1-165 (189)
18 cd03754 proteasome_alpha_type_ 100.0 4.3E-42 9.2E-47 271.0 20.9 170 9-179 25-202 (215)
19 cd01906 proteasome_protease_Hs 100.0 2.3E-41 4.9E-46 259.7 22.2 169 14-182 1-171 (182)
20 cd01911 proteasome_alpha prote 100.0 1.7E-41 3.8E-46 266.4 20.5 169 11-180 25-197 (209)
21 cd03756 proteasome_alpha_arche 100.0 2.2E-41 4.8E-46 266.2 20.9 168 10-179 25-196 (211)
22 PF00227 Proteasome: Proteasom 100.0 2.5E-41 5.4E-46 261.1 20.7 171 11-181 2-178 (190)
23 cd03753 proteasome_alpha_type_ 100.0 3.6E-41 7.9E-46 265.4 21.4 167 11-179 25-200 (213)
24 cd03749 proteasome_alpha_type_ 100.0 4.2E-41 9E-46 264.7 21.4 164 11-181 25-194 (211)
25 PTZ00246 proteasome subunit al 100.0 4.5E-41 9.9E-46 271.1 21.4 170 11-180 29-202 (253)
26 PRK03996 proteasome subunit al 100.0 7E-41 1.5E-45 268.3 20.6 169 10-180 33-205 (241)
27 TIGR03633 arc_protsome_A prote 100.0 1.1E-40 2.5E-45 264.4 21.0 168 10-179 26-197 (224)
28 KOG0179|consensus 100.0 5.3E-41 1.1E-45 254.5 17.1 180 1-180 17-207 (235)
29 cd03765 proteasome_beta_bacter 100.0 6.8E-40 1.5E-44 260.8 20.5 166 14-181 1-185 (236)
30 KOG0176|consensus 100.0 7.2E-41 1.6E-45 251.9 13.7 167 11-182 32-207 (241)
31 KOG0177|consensus 100.0 1E-39 2.2E-44 244.1 15.6 170 13-182 1-172 (200)
32 TIGR03691 20S_bact_alpha prote 100.0 2.1E-38 4.6E-43 251.6 20.7 159 11-177 25-189 (228)
33 KOG0184|consensus 100.0 7E-36 1.5E-40 228.4 16.4 168 10-182 31-202 (254)
34 KOG0181|consensus 100.0 2.3E-36 5E-41 227.1 12.3 167 10-181 29-199 (233)
35 KOG0183|consensus 100.0 3.3E-36 7.1E-41 229.2 11.2 171 10-182 27-201 (249)
36 KOG0178|consensus 100.0 3.8E-35 8.2E-40 222.9 15.4 169 11-182 29-202 (249)
37 KOG0173|consensus 100.0 9.9E-34 2.2E-38 220.1 15.6 170 5-176 29-198 (271)
38 PRK05456 ATP-dependent proteas 100.0 5.2E-33 1.1E-37 211.6 18.9 155 13-181 1-160 (172)
39 KOG0185|consensus 100.0 1.1E-33 2.4E-38 217.8 13.0 175 3-178 32-212 (256)
40 KOG0180|consensus 100.0 1E-32 2.2E-37 203.8 17.2 169 7-175 2-171 (204)
41 KOG0174|consensus 100.0 2.5E-33 5.5E-38 210.5 12.9 168 10-178 16-183 (224)
42 KOG0863|consensus 100.0 8E-33 1.7E-37 212.7 14.4 168 10-182 29-200 (264)
43 cd01901 Ntn_hydrolase The Ntn 100.0 3E-31 6.4E-36 197.9 21.4 161 14-175 1-163 (164)
44 cd01913 protease_HslV Protease 100.0 1.3E-31 2.9E-36 202.8 18.2 152 14-179 1-157 (171)
45 KOG0175|consensus 100.0 2.7E-32 5.9E-37 212.6 13.4 165 11-176 69-233 (285)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.2E-30 2.6E-35 197.6 17.8 152 14-179 1-157 (171)
47 KOG0182|consensus 100.0 1.3E-29 2.9E-34 192.8 16.2 169 9-181 32-206 (246)
48 COG5405 HslV ATP-dependent pro 99.6 1.1E-15 2.5E-20 112.4 9.8 155 11-177 2-159 (178)
49 COG3484 Predicted proteasome-t 98.9 1.9E-08 4E-13 77.2 10.7 154 13-168 1-173 (255)
50 PF09894 DUF2121: Uncharacteri 96.4 0.29 6.2E-06 37.8 13.7 130 13-177 1-161 (194)
51 KOG3361|consensus 90.0 0.51 1.1E-05 34.3 3.8 44 126-169 71-114 (157)
52 COG4079 Uncharacterized protei 80.8 28 0.00061 28.1 13.2 133 13-178 1-163 (293)
53 PF12481 DUF3700: Aluminium in 67.0 63 0.0014 25.7 8.7 78 15-98 44-131 (228)
54 PF07499 RuvA_C: RuvA, C-termi 49.2 13 0.00029 21.7 1.6 34 141-177 12-46 (47)
55 COG2920 DsrC Dissimilatory sul 43.4 56 0.0012 22.8 4.2 30 67-100 47-76 (111)
56 COG0822 IscU NifU homolog invo 42.9 79 0.0017 23.4 5.3 54 124-178 44-98 (150)
57 PF11211 DUF2997: Protein of u 41.9 37 0.0008 20.1 2.8 32 126-157 3-34 (48)
58 PRK14065 exodeoxyribonuclease 39.9 61 0.0013 21.7 3.8 33 147-179 32-64 (86)
59 PF04539 Sigma70_r3: Sigma-70 38.2 70 0.0015 20.2 4.0 29 69-97 3-31 (78)
60 PRK11325 scaffold protein; Pro 37.9 87 0.0019 22.4 4.8 50 127-176 46-95 (127)
61 PRK11508 sulfur transfer prote 37.6 1E+02 0.0022 21.7 4.9 36 61-100 39-74 (109)
62 PF07104 DUF1366: Protein of u 33.8 31 0.00068 24.6 1.8 48 128-179 11-58 (116)
63 PRK14606 ruvA Holliday junctio 32.7 55 0.0012 25.2 3.2 39 139-180 150-188 (188)
64 PF00538 Linker_histone: linke 31.9 94 0.002 19.9 3.8 37 142-178 20-56 (77)
65 TIGR03342 dsrC_tusE_dsvC sulfu 31.8 1.4E+02 0.0031 20.9 4.9 36 61-100 38-73 (108)
66 COG1754 Uncharacterized C-term 30.1 36 0.00079 28.1 1.9 53 116-171 79-134 (298)
67 PF12120 Arr-ms: Rifampin ADP- 29.5 28 0.00061 23.8 1.0 18 120-137 52-69 (100)
68 PF02609 Exonuc_VII_S: Exonucl 29.3 1E+02 0.0022 18.3 3.4 30 150-179 9-38 (53)
69 PF14821 Thr_synth_N: Threonin 27.1 1.2E+02 0.0025 19.8 3.6 28 146-173 51-78 (79)
70 PF01592 NifU_N: NifU-like N t 26.6 1.3E+02 0.0029 21.2 4.2 49 126-174 42-91 (126)
71 TIGR01999 iscU FeS cluster ass 25.1 1.7E+02 0.0037 20.7 4.5 50 127-176 44-93 (124)
72 cd06664 IscU_like Iron-sulfur 25.0 2E+02 0.0044 20.0 4.9 50 127-177 42-91 (123)
73 PF09424 YqeY: Yqey-like prote 24.9 1E+02 0.0023 22.6 3.4 89 66-178 20-108 (143)
74 COG3140 Uncharacterized protei 24.2 1.3E+02 0.0027 18.5 3.0 35 146-180 13-47 (60)
75 KOG3652|consensus 23.0 1.1E+02 0.0024 28.6 3.7 93 81-184 209-308 (1215)
76 cd01678 PFL1 Pyruvate formate 22.4 90 0.002 29.4 3.2 42 138-179 259-301 (738)
77 TIGR01255 pyr_form_ly_1 format 22.3 98 0.0021 29.2 3.4 43 138-180 257-300 (744)
78 PF13983 YsaB: YsaB-like lipop 22.1 2.3E+02 0.005 18.3 4.2 56 80-135 9-72 (77)
79 PF01726 LexA_DNA_bind: LexA D 21.2 1.8E+02 0.004 18.1 3.6 21 76-96 15-35 (65)
80 PF00165 HTH_AraC: Bacterial r 20.3 56 0.0012 18.1 0.9 28 153-180 1-28 (42)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-47 Score=301.02 Aligned_cols=175 Identities=38% Similarity=0.598 Sum_probs=168.6
Q ss_pred cccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCC
Q psy2800 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQ 85 (184)
Q Consensus 6 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 85 (184)
|+||+++|+|+|||+++||||||+|++.+.+.++..++.+|||+|++++++++||..+|++.+.+++|.+++.|++.+++
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 79999999999999999999999999999998887889999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccC-------
Q psy2800 86 PLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLS------- 158 (184)
Q Consensus 86 ~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~------- 158 (184)
+++++.+++++++++|.+|.+||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 9999999999999999988889999999999998778999999999999999999999999999999999985
Q ss_pred --CCCChhHHHHHHHHHHHHhccc
Q psy2800 159 --PYESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 159 --~~~s~~ea~~li~~~i~~l~~~ 180 (184)
++||++||.+++.+|++.+..+
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~r 184 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAER 184 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988764
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-46 Score=291.52 Aligned_cols=169 Identities=26% Similarity=0.398 Sum_probs=161.6
Q ss_pred cCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHH
Q psy2800 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPG 91 (184)
Q Consensus 12 ~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
+|+|+|||+++||||||+|++.+++.++..++.+|||+|++|+++++||+.+|++.+.+++|.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999887776778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeC-eEEEecCHHHHHHHHhcccCCCCChhHHHHHH
Q psy2800 92 TAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVA-YRLHGTSAKFMLASMSYLLSPYESEFDYTDVI 170 (184)
Q Consensus 92 ~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li 170 (184)
+++++++++|.+|.+||+|++||||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|+++||.+++
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 161 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETI 161 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 99999999998888899999999999987789999999999998877 99999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q psy2800 171 TMALEELTPV 180 (184)
Q Consensus 171 ~~~i~~l~~~ 180 (184)
.+|++.+..+
T Consensus 162 ~~~l~~~~~r 171 (195)
T cd03759 162 SQALLSAVDR 171 (195)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 3
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.2e-45 Score=281.09 Aligned_cols=166 Identities=19% Similarity=0.158 Sum_probs=159.7
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.+|.+||++++||||||++ +|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++||.+++.+|
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~-g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~ 159 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKT-GPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRA 159 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 999999999888899999999999965 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
++.+.+|
T Consensus 160 l~~~~~r 166 (188)
T cd03761 160 IYHATHR 166 (188)
T ss_pred HHHHHHh
Confidence 9887764
No 4
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-45 Score=290.43 Aligned_cols=172 Identities=27% Similarity=0.346 Sum_probs=162.9
Q ss_pred cccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2800 8 HYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPL 87 (184)
Q Consensus 8 ~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 87 (184)
+....|+|+|||+++||||||+|+|.+++.++..++.+|||+|+||++|++||+.+|++.++++++.+++.|++.+++++
T Consensus 25 a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i 104 (236)
T COG0638 25 AVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPI 104 (236)
T ss_pred HHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445799999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhcC--CCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 88 SLPGTAEMLSLLLYERRI--FPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 88 ~~~~~a~~i~~~~~~~r~--~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+++.+++.+++++|..+. |||++++||||+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|+++|+.+|
T Consensus 105 ~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~ee 183 (236)
T COG0638 105 SVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEE 183 (236)
T ss_pred CHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHH
Confidence 999999999999997776 89999999999998 779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|++++.+|+++..+|
T Consensus 184 ai~la~~al~~a~~r 198 (236)
T COG0638 184 AIELAVKALRAAIER 198 (236)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988887764
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-44 Score=280.76 Aligned_cols=170 Identities=24% Similarity=0.241 Sum_probs=160.1
Q ss_pred cCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHH-HHHHhcCCCCChH
Q psy2800 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEIN-RSAEAKGQPLSLP 90 (184)
Q Consensus 12 ~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 90 (184)
.|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++++++|+.+|++.+++++|.+++ .|.++++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 389999999999999999999998888888999999999999999999999999999999999987 5668889999999
Q ss_pred HHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC--CCChhHH
Q psy2800 91 GTAEMLSLLLYERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP--YESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~~ea 166 (184)
.+++++++++|.+| ++||+|++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999999999776 7899999999999976679999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhcccc
Q psy2800 167 TDVITMALEELTPVV 181 (184)
Q Consensus 167 ~~li~~~i~~l~~~~ 181 (184)
++++.+|++.+.++.
T Consensus 161 ~~l~~~~l~~~~~rd 175 (197)
T cd03760 161 RALIEECMKVLYYRD 175 (197)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
No 6
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-44 Score=278.67 Aligned_cols=167 Identities=27% Similarity=0.400 Sum_probs=158.5
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hc-CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHH
Q psy2800 94 EMLSLLLYE-RR-IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVIT 171 (184)
Q Consensus 94 ~~i~~~~~~-~r-~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~ 171 (184)
+++++++|. .| .+||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||.+++.
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~ 161 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999963 23 3699999999999976679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q psy2800 172 MALEELTPV 180 (184)
Q Consensus 172 ~~i~~l~~~ 180 (184)
+|++.+..|
T Consensus 162 ~a~~~~~~r 170 (193)
T cd03758 162 KCIKELKKR 170 (193)
T ss_pred HHHHHHHHh
Confidence 999998764
No 7
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.7e-44 Score=276.58 Aligned_cols=167 Identities=27% Similarity=0.402 Sum_probs=161.0
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
|+|+|||+++||||||+|++.+.+.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHH
Q psy2800 93 AEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITM 172 (184)
Q Consensus 93 a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~ 172 (184)
++++++++|.++++||+|++||||+|++| |+||++||+|++.+++++++|+|+++++++||+.|+++||++||.+++.+
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 159 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVR 159 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999988889999999999999765 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q psy2800 173 ALEELTPV 180 (184)
Q Consensus 173 ~i~~l~~~ 180 (184)
|++.+.++
T Consensus 160 ~l~~~~~r 167 (185)
T TIGR03634 160 AIKSAIER 167 (185)
T ss_pred HHHHHHHh
Confidence 99988764
No 8
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-43 Score=276.15 Aligned_cols=168 Identities=19% Similarity=0.279 Sum_probs=156.8
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|++.+.. ++.+++.+||++|++|+++++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus 25 ~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 103 (207)
T cd03755 25 RKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVE 103 (207)
T ss_pred HcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 58999999999999999999998654 55567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 91 GTAEMLSLLL--YERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~--~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
.+++++++++ |.+| .|||+|++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++||
T Consensus 104 ~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea 183 (207)
T cd03755 104 YITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDT 183 (207)
T ss_pred HHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHH
Confidence 9999999999 5554 67999999999999877799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy2800 167 TDVITMALEELTP 179 (184)
Q Consensus 167 ~~li~~~i~~l~~ 179 (184)
++++.+|+....+
T Consensus 184 i~l~~~~l~~~~~ 196 (207)
T cd03755 184 IKLAIKALLEVVQ 196 (207)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887654
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-43 Score=270.61 Aligned_cols=166 Identities=27% Similarity=0.396 Sum_probs=159.9
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.+|++||+|++||||+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|+++|+.+||.+++.+|
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~ 159 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRA 159 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999888899999999999997 56999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
++.+.++
T Consensus 160 l~~~~~r 166 (188)
T cd03764 160 IKSAIER 166 (188)
T ss_pred HHHHHhh
Confidence 9988764
No 10
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-43 Score=276.08 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=159.8
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|++.+++.++.+++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus 27 ~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~ 106 (213)
T cd03752 27 SHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVE 106 (213)
T ss_pred hcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 68999999999999999999999988776667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hh--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 91 GTAEMLSLLLY--ER--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~~--~~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
.+++.++..++ .+ +.|||+|++|++|||++.+|+||.+||+|++.+++++|+|+++.+++++||+.|+++|+++||
T Consensus 107 ~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea 186 (213)
T cd03752 107 QLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEA 186 (213)
T ss_pred HHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHH
Confidence 99999998863 22 356999999999999765699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccc
Q psy2800 167 TDVITMALEELTPVVK 182 (184)
Q Consensus 167 ~~li~~~i~~l~~~~~ 182 (184)
.+++.+|+....++.+
T Consensus 187 ~~l~~~al~~~~~r~~ 202 (213)
T cd03752 187 LALAVKVLSKTMDSTK 202 (213)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999988776543
No 11
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=5.6e-43 Score=280.85 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=161.5
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|+++++++|+++
T Consensus 37 ~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~ 116 (247)
T PTZ00488 37 AHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVA 116 (247)
T ss_pred CCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 47999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHH
Q psy2800 91 GTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVI 170 (184)
Q Consensus 91 ~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li 170 (184)
.+++++++++|.+|..|+.+++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++
T Consensus 117 ~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~ 195 (247)
T PTZ00488 117 AASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLG 195 (247)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHH
Confidence 9999999999998856667779999999765 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccc
Q psy2800 171 TMALEELTPVV 181 (184)
Q Consensus 171 ~~~i~~l~~~~ 181 (184)
.+|++.+.+|-
T Consensus 196 ~kal~~~~~Rd 206 (247)
T PTZ00488 196 RRAIYHATFRD 206 (247)
T ss_pred HHHHHHHHHhc
Confidence 99999887753
No 12
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-42 Score=268.36 Aligned_cols=167 Identities=26% Similarity=0.444 Sum_probs=160.2
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|++.+.+..+..++.+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.+|.+||++++||||+|++++|+||++||+|++.+++++|+|+++++++++||+.|+++|+++||.+++.+|
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 99999999877789999999999998677999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
++.+.++
T Consensus 161 l~~~~~~ 167 (189)
T cd01912 161 IDSAIER 167 (189)
T ss_pred HHHHHHh
Confidence 9887654
No 13
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.3e-42 Score=274.74 Aligned_cols=169 Identities=30% Similarity=0.438 Sum_probs=158.7
Q ss_pred cCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHH
Q psy2800 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPG 91 (184)
Q Consensus 12 ~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
+|+|+|||+++||||||+|++.+++.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---cCCCeeEEEEEEEEcCC-CceeEEEECCCC-ceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 92 TAEMLSLLLYER---RIFPYYVQVLLVGIDGT-GKGGVYSYDPVG-HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 92 ~a~~i~~~~~~~---r~~P~~~s~lv~G~d~~-g~p~Ly~id~~G-~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
+++++++++|.. +++||++++||||||++ ++|+||++||+| .+.+++++|+|+|+++++++||+.|+++||.+||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999999643 36799999999999964 679999999999 5888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy2800 167 TDVITMALEELTPV 180 (184)
Q Consensus 167 ~~li~~~i~~l~~~ 180 (184)
.+++.+|+....++
T Consensus 161 i~l~~~al~~~~~~ 174 (219)
T TIGR03690 161 LRVAVEALYDAADD 174 (219)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887764
No 14
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-42 Score=276.58 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=156.5
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++|++||+.+|++.+.+++|.+++.|++.++++++++
T Consensus 25 ~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~ 103 (227)
T cd03750 25 SSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVS 103 (227)
T ss_pred HcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 5899999999999999999999984 567778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 91 GTAEMLSLLL--YERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~--~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
.+++++++++ |.+| .|||+|++||||||++ +|+||++||+|++.+++++|+|+|+++++++||++|+++|+++||
T Consensus 104 ~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea 182 (227)
T cd03750 104 QLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDA 182 (227)
T ss_pred HHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHH
Confidence 9999999999 4444 6899999999999976 499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy2800 167 TDVITMALEELTP 179 (184)
Q Consensus 167 ~~li~~~i~~l~~ 179 (184)
++++.+||+....
T Consensus 183 i~l~~~~l~~~~~ 195 (227)
T cd03750 183 IHTAILTLKEGFE 195 (227)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999986554
No 15
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-42 Score=267.30 Aligned_cols=166 Identities=16% Similarity=0.226 Sum_probs=158.1
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.+| +||++++||||+|++.+|+||++||+|++.+++++++|+|+++++++||+.|+++|+++||.+++.+|
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~a 159 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNA 159 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999998765 59999999999997556999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
++.+.+|
T Consensus 160 l~~~~~r 166 (188)
T cd03762 160 LSLAMSR 166 (188)
T ss_pred HHHHHHh
Confidence 9988764
No 16
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-42 Score=272.20 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=149.5
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|++.++ .+...++.+|||+|++|+++++||+.+|++.+.+++|.+++.|++.++++++++
T Consensus 28 ~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~ 106 (212)
T cd03751 28 ENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVK 106 (212)
T ss_pred hcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 6899999999999999999999986 445567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 91 GTAEMLSLLLYE--R--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~~~--~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
.++++++++++. + ..|||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||
T Consensus 107 ~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eea 185 (212)
T cd03751 107 VLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREA 185 (212)
T ss_pred HHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHH
Confidence 999999998742 2 25699999999999965 499999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHh
Q psy2800 167 TDVITMALEEL 177 (184)
Q Consensus 167 ~~li~~~i~~l 177 (184)
++++.++|...
T Consensus 186 i~l~~~~L~~~ 196 (212)
T cd03751 186 VKEAAKIIYIV 196 (212)
T ss_pred HHHHHHHHHHH
Confidence 66655555443
No 17
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-42 Score=265.78 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=157.1
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+++.++..++.+|||+|+++++++++|+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++.+|..+ .||+|++||||||++| |+||++||+|++.+++++|+|+++++++++||+.|+++||++||++++.+|
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~ 158 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEA 158 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 99999998654 4999999999999765 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
++.+.++
T Consensus 159 l~~~~~r 165 (189)
T cd03763 159 IEAGIFN 165 (189)
T ss_pred HHHHHHh
Confidence 9987654
No 18
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-42 Score=271.05 Aligned_cols=170 Identities=19% Similarity=0.241 Sum_probs=154.8
Q ss_pred ccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy2800 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLS 88 (184)
Q Consensus 9 ~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 88 (184)
+.++|+|+|||+++||||||+|+|.+.+. +..++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++
T Consensus 25 ~~~~g~t~igi~~~d~Vvlaad~r~~~~~-i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 103 (215)
T cd03754 25 VKNAGLTSVAVRGKDCAVVVTQKKVPDKL-IDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMP 103 (215)
T ss_pred HhcCCccEEEEEeCCEEEEEEeccccccc-cCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34468899999999999999999998754 44558899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCC--C-
Q psy2800 89 LPGTAEMLSLLL--YERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPY--E- 161 (184)
Q Consensus 89 ~~~~a~~i~~~~--~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~--~- 161 (184)
++.+++++++++ |.++ .|||++++|+||||++++|+||++||+|++.+++++|+|+|+++++++||++|+++ |
T Consensus 104 v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~ 183 (215)
T cd03754 104 VDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLI 183 (215)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccC
Confidence 999999999974 5544 46999999999999766799999999999999999999999999999999999995 7
Q ss_pred -ChhHHHHHHHHHHHHhcc
Q psy2800 162 -SEFDYTDVITMALEELTP 179 (184)
Q Consensus 162 -s~~ea~~li~~~i~~l~~ 179 (184)
+.+||++++.+|+....+
T Consensus 184 ~s~eeai~l~~~al~~~~~ 202 (215)
T cd03754 184 ESYEETVELAISCLQTVLS 202 (215)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 999999999998887754
No 19
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.3e-41 Score=259.66 Aligned_cols=169 Identities=26% Similarity=0.369 Sum_probs=160.9
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|++.+.+.....++.+|||+|+++++++++|+.+|++.+.++++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998777688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHH
Q psy2800 94 EMLSLLLYERRI--FPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVIT 171 (184)
Q Consensus 94 ~~i~~~~~~~r~--~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~ 171 (184)
+++++++|.+|. +||++++||||+|++++|+||.+||+|++.+++++|+|+++++++++||+.|+++||.+|+.+++.
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~ 160 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 999999987765 899999999999976679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccc
Q psy2800 172 MALEELTPVVK 182 (184)
Q Consensus 172 ~~i~~l~~~~~ 182 (184)
+|++.+.++..
T Consensus 161 ~~l~~~~~~~~ 171 (182)
T cd01906 161 KALKSALERDL 171 (182)
T ss_pred HHHHHHHcccC
Confidence 99999887643
No 20
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.7e-41 Score=266.45 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=158.4
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|++.+.+ ++..++.+|||+|++++++++||..+|++.+.+.++.+++.|+++++++++++
T Consensus 25 ~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~ 103 (209)
T cd01911 25 KNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVE 103 (209)
T ss_pred HcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 58999999999999999999999865 45668999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 91 GTAEMLSLLLY--ERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~~--~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
.++++++++++ .+| .|||+|++||||+|++++|+||.+||.|++.+++++++|+|+.+++++||+.|+++|+.+||
T Consensus 104 ~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea 183 (209)
T cd01911 104 VLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEA 183 (209)
T ss_pred HHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHH
Confidence 99999999884 332 56999999999999876799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy2800 167 TDVITMALEELTPV 180 (184)
Q Consensus 167 ~~li~~~i~~l~~~ 180 (184)
.+++.+|++.+..+
T Consensus 184 ~~l~~~~l~~~~~~ 197 (209)
T cd01911 184 IKLALKALKEVLEE 197 (209)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988765
No 21
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-41 Score=266.23 Aligned_cols=168 Identities=18% Similarity=0.250 Sum_probs=156.3
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|++.+. .++..++.+||++|++++++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 103 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV 103 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35899999999999999999999974 46667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hh--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLY--ER--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~--~~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.++++++.+++ .+ +.|||++++||||||+. +|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++|
T Consensus 104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~e 182 (211)
T cd03756 104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEE 182 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHH
Confidence 999999999884 23 36799999999999975 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy2800 166 YTDVITMALEELTP 179 (184)
Q Consensus 166 a~~li~~~i~~l~~ 179 (184)
|.+++.+|+....+
T Consensus 183 a~~l~~~~l~~~~~ 196 (211)
T cd03756 183 AIELALKALYAALE 196 (211)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 22
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.5e-41 Score=261.10 Aligned_cols=171 Identities=29% Similarity=0.391 Sum_probs=157.5
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCC-cCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNN-QLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
++|+|+|||+++|||+||+|++.+.+..+..++ .+|||+|++++++++||+.+|++.+.++++.+++.|++.+++++++
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 81 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP 81 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence 589999999999999999999999887775666 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeee-CeEEEecCHHHHHHHHhcccCCCCChh
Q psy2800 90 PGTAEMLSLLL----YERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKV-AYRLHGTSAKFMLASMSYLLSPYESEF 164 (184)
Q Consensus 90 ~~~a~~i~~~~----~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~ 164 (184)
+.+++.++..+ +..+++|+++++|+||+|++++|+||.+||+|++.++ +++|+|+|+++++++||+.|+++|+++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ 161 (190)
T PF00227_consen 82 EYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLE 161 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHH
T ss_pred hhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHH
Confidence 97776666655 3445789999999999998888999999999999999 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q psy2800 165 DYTDVITMALEELTPVV 181 (184)
Q Consensus 165 ea~~li~~~i~~l~~~~ 181 (184)
||.+++.+|++.+.++-
T Consensus 162 ea~~~~~~~l~~~~~~d 178 (190)
T PF00227_consen 162 EAIELALKALKEAIDRD 178 (190)
T ss_dssp HHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999887643
No 23
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-41 Score=265.37 Aligned_cols=167 Identities=16% Similarity=0.256 Sum_probs=155.5
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|++.+.+ +...++.+||++|++++++++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus 25 ~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 103 (213)
T cd03753 25 KLGSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVE 103 (213)
T ss_pred hcCCCEEEEEeCCEEEEEEecccCCc-CcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 58999999999999999999999864 45677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--hc-------CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCC
Q psy2800 91 GTAEMLSLLLYE--RR-------IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYE 161 (184)
Q Consensus 91 ~~a~~i~~~~~~--~r-------~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 161 (184)
.++++++.++|. ++ .|||+|++||||||++ +|+||++||+|++.+++++|+|+++++++++||+.|+++|
T Consensus 104 ~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~-gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~l 182 (213)
T cd03753 104 SVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN-GPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDM 182 (213)
T ss_pred HHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC-CCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCC
Confidence 999999999863 21 3799999999999965 4999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcc
Q psy2800 162 SEFDYTDVITMALEELTP 179 (184)
Q Consensus 162 s~~ea~~li~~~i~~l~~ 179 (184)
+++||++++.+||+.+.+
T Consensus 183 s~eeai~l~~~~l~~~~~ 200 (213)
T cd03753 183 TLEEAEKLALSILKQVME 200 (213)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999998754
No 24
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.2e-41 Score=264.72 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=147.2
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|+|.+.+ +.++.+|||+|++++++++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus 25 ~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~ 101 (211)
T cd03749 25 KQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVS 101 (211)
T ss_pred hcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 57999999999999999999998765 345779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccC--CCCChh
Q psy2800 91 GTAEMLSLLLYE--R--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLS--PYESEF 164 (184)
Q Consensus 91 ~~a~~i~~~~~~--~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~--~~~s~~ 164 (184)
.+++.++.+++. + +.|||+|++||||||++| |+||++||+|++.+++++|+|+|+++++++||++|+ ++|+++
T Consensus 102 ~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~g-p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~e 180 (211)
T cd03749 102 RLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESG-PHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLE 180 (211)
T ss_pred HHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCC-CeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHH
Confidence 999999998752 2 357999999999999765 999999999999999999999999999999999999 589998
Q ss_pred HHHHHHHHHHHHhcccc
Q psy2800 165 DYTDVITMALEELTPVV 181 (184)
Q Consensus 165 ea~~li~~~i~~l~~~~ 181 (184)
|+. +.|+++|++++
T Consensus 181 e~i---~~~~~~l~~~~ 194 (211)
T cd03749 181 ELI---KHALRALRETL 194 (211)
T ss_pred HHH---HHHHHHHHHHh
Confidence 865 45555555544
No 25
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.5e-41 Score=271.14 Aligned_cols=170 Identities=14% Similarity=0.113 Sum_probs=158.6
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|+|.+++.++..++.+|||+|+++++++++|+.+|++.+.+++|.+++.|++.++++++++
T Consensus 29 ~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~ 108 (253)
T PTZ00246 29 NNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVE 108 (253)
T ss_pred HhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 58999999999999999999999998877667799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 91 GTAEMLSLLLYE--R--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~~~--~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
.+++.++..++. + +.|||+|++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++||
T Consensus 109 ~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea 188 (253)
T PTZ00246 109 QLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQG 188 (253)
T ss_pred HHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHH
Confidence 999999988642 2 467999999999999766699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy2800 167 TDVITMALEELTPV 180 (184)
Q Consensus 167 ~~li~~~i~~l~~~ 180 (184)
++++.+|++.+..+
T Consensus 189 i~l~~~al~~~~~~ 202 (253)
T PTZ00246 189 LLLAAKVLTKSMDS 202 (253)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 26
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=7e-41 Score=268.30 Aligned_cols=169 Identities=19% Similarity=0.259 Sum_probs=157.0
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|++.+. .++..++.+||++|++++++++||+.+|++.+.++++.+++.|++.+++++++
T Consensus 33 v~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 111 (241)
T PRK03996 33 VKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGV 111 (241)
T ss_pred HHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 36899999999999999999999984 45667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hh--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLY--ER--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~--~~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.++++++.+++ .+ +.|||+|++||||||++| |+||++||+|++.+++++|+|+|++.++++||+.|+++|+++|
T Consensus 112 ~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ee 190 (241)
T PRK03996 112 ETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEE 190 (241)
T ss_pred HHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCc-CEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHH
Confidence 999999999984 32 256999999999999754 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|.+++.+|+....++
T Consensus 191 ai~l~~~al~~~~~~ 205 (241)
T PRK03996 191 AIELALKALAKANEG 205 (241)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
No 27
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.1e-40 Score=264.39 Aligned_cols=168 Identities=21% Similarity=0.268 Sum_probs=156.0
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+. .++..++.+||++|++++++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 26 v~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 104 (224)
T TIGR03633 26 VKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDV 104 (224)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35899999999999999999999984 56667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hh--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLY--ER--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~--~~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.++++++.+++ .+ +.|||+|++||||+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.|+++|+.+|
T Consensus 105 ~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~ee 183 (224)
T TIGR03633 105 ETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDE 183 (224)
T ss_pred HHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHH
Confidence 999999999984 33 2569999999999995 569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy2800 166 YTDVITMALEELTP 179 (184)
Q Consensus 166 a~~li~~~i~~l~~ 179 (184)
|.+++.+|++...+
T Consensus 184 ai~l~~~al~~~~~ 197 (224)
T TIGR03633 184 AIELALKALYSAVE 197 (224)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 28
>KOG0179|consensus
Probab=100.00 E-value=5.3e-41 Score=254.48 Aligned_cols=180 Identities=37% Similarity=0.586 Sum_probs=170.5
Q ss_pred CcccccccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHH
Q psy2800 1 MTEAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSA 80 (184)
Q Consensus 1 ~~~~~~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 80 (184)
|+++.|+||.++|+|+|||.+.|++|+|+|+|.+.+..+.+++.+|||+++|+++++.||+++|+..|...++...+.|+
T Consensus 17 ~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~ 96 (235)
T KOG0179|consen 17 MDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYE 96 (235)
T ss_pred cccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccC--
Q psy2800 81 EAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLS-- 158 (184)
Q Consensus 81 ~~~~~~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~-- 158 (184)
.++++.|+++.+|+.++.+||.+|++||++..+|||+|++|++.+|++||.|+++...+.|-|+++.+++++|++..+
T Consensus 97 ~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~k 176 (235)
T KOG0179|consen 97 HDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHK 176 (235)
T ss_pred hcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred ---------CCCChhHHHHHHHHHHHHhccc
Q psy2800 159 ---------PYESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 159 ---------~~~s~~ea~~li~~~i~~l~~~ 180 (184)
+.+|+++|+.|++.++..-.+|
T Consensus 177 n~~~e~~~~~~Ls~e~ai~lv~d~F~SAaER 207 (235)
T KOG0179|consen 177 NQNLENAERTPLSLERAIRLVKDAFTSAAER 207 (235)
T ss_pred CcccccCcccccCHHHHHHHHHHHhhhhhhc
Confidence 3488999999999888765544
No 29
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-40 Score=260.78 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=148.9
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcC----CceEEEEecChhHHHHHHHHHHHHHHHHHHhcCC-CCC
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLP----NQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQ-PLS 88 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 88 (184)
+-+|||+++||||||+|+|.+.+.... ++.+|||+|+ +|++|+.||+.+|++.+++++|.+++.|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 358999999999999999998775544 4799999998 8999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHh-------h---cCCCeeEEEEEEEEcCCCceeEEEECCCCceeee----CeEEEecCHHHHHHHHh
Q psy2800 89 LPGTAEMLSLLLYE-------R---RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKV----AYRLHGTSAKFMLASMS 154 (184)
Q Consensus 89 ~~~~a~~i~~~~~~-------~---r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~----~~~aiG~g~~~~~~~Le 154 (184)
++.++++++++++. . +.+||+|++||||||++.+|+||++||+|++.++ +|+|+|. +++++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999998643 1 1469999999999996556999999999999998 5689996 799999999
Q ss_pred cccCCCCChhHHHHHHHHHHHHhcccc
Q psy2800 155 YLLSPYESEFDYTDVITMALEELTPVV 181 (184)
Q Consensus 155 ~~~~~~~s~~ea~~li~~~i~~l~~~~ 181 (184)
+.|+++||++||++++.+|+++..++-
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd 185 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSN 185 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998876643
No 30
>KOG0176|consensus
Probab=100.00 E-value=7.2e-41 Score=251.88 Aligned_cols=167 Identities=22% Similarity=0.295 Sum_probs=152.4
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
+.|+|.|||+.++|||||++||++++ +..++...||++|++||+|++||+.+|++.++++.|.++++|++.++++++++
T Consensus 32 kLGsTaIGv~TkEgVvL~vEKritSp-Lm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VE 110 (241)
T KOG0176|consen 32 KLGSTAIGVKTKEGVVLAVEKRITSP-LMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVE 110 (241)
T ss_pred hcCCceeeeeccceEEEEEeccccCc-ccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHH
Confidence 67999999999999999999999986 45789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-------hhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCC
Q psy2800 91 GTAEMLSLLLY-------ERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYE 161 (184)
Q Consensus 91 ~~a~~i~~~~~-------~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 161 (184)
.+.+.++++-. ..+ -|||||++|+||+|.+| |+||+.||+|++..+++-|||+|++-+.+.|++.|++++
T Consensus 111 s~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~l 189 (241)
T KOG0176|consen 111 SLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDL 189 (241)
T ss_pred HHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcc
Confidence 99999999862 112 36999999999999655 999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhccccc
Q psy2800 162 SEFDYTDVITMALEELTPVVK 182 (184)
Q Consensus 162 s~~ea~~li~~~i~~l~~~~~ 182 (184)
+++||+ +.+++.|+++|+
T Consensus 190 tL~ea~---~~~L~iLkqVMe 207 (241)
T KOG0176|consen 190 TLKEAE---KIVLKILKQVME 207 (241)
T ss_pred cHHHHH---HHHHHHHHHHHH
Confidence 998875 566667777664
No 31
>KOG0177|consensus
Probab=100.00 E-value=1e-39 Score=244.05 Aligned_cols=170 Identities=25% Similarity=0.348 Sum_probs=162.4
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
+.+++||++.|+|++|+|+...++.++++++.+|++.|++++.|.++|..+|+.++.++++++++.|++++|.+++|+..
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--hhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHH
Q psy2800 93 AEMLSLLLY--ERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVI 170 (184)
Q Consensus 93 a~~i~~~~~--~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li 170 (184)
+|++++.+. .|..+||.|++|+||+|++-+|.||++|..|+..+.+|++.|.++.+++++||++|+||||.+||.+++
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 81 AHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 999999995 232679999999999998755999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccc
Q psy2800 171 TMALEELTPVVK 182 (184)
Q Consensus 171 ~~~i~~l~~~~~ 182 (184)
++|+.+|++|+=
T Consensus 161 kKCv~El~kRlv 172 (200)
T KOG0177|consen 161 KKCVLELKKRLV 172 (200)
T ss_pred HHHHHHHHHhcc
Confidence 999999999974
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.1e-38 Score=251.60 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=144.9
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKG-QPLSL 89 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 89 (184)
++|+|+|||+++||||||+|++. .+.+|||+|+||++|+++|+.+|++.++++++.+++.|++.++ .++++
T Consensus 25 ~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v 96 (228)
T TIGR03691 25 ARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTG 96 (228)
T ss_pred HcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccH
Confidence 57999999999999999999962 3679999999999999999999999999999999999999997 68999
Q ss_pred HHHHHHHHHHHHhh---cCCCeeEEEEEEEEcC-CCceeEEEECCCCceeeeC-eEEEecCHHHHHHHHhcccCCCCChh
Q psy2800 90 PGTAEMLSLLLYER---RIFPYYVQVLLVGIDG-TGKGGVYSYDPVGHCEKVA-YRLHGTSAKFMLASMSYLLSPYESEF 164 (184)
Q Consensus 90 ~~~a~~i~~~~~~~---r~~P~~~s~lv~G~d~-~g~p~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~ 164 (184)
+.+++.+++.++.. |.|||+|++|+||||+ +.+|+||++||+|++.+++ ++|+|+|++.++++||++|+++||.+
T Consensus 97 ~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~e 176 (228)
T TIGR03691 97 RGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLA 176 (228)
T ss_pred HHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHH
Confidence 99999888877421 3569999999999985 3459999999999999876 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2800 165 DYTDVITMALEEL 177 (184)
Q Consensus 165 ea~~li~~~i~~l 177 (184)
||++++.+||+..
T Consensus 177 eai~la~~aL~~~ 189 (228)
T TIGR03691 177 DALGLAVQALRAG 189 (228)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998887
No 33
>KOG0184|consensus
Probab=100.00 E-value=7e-36 Score=228.43 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=151.1
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+.+++|+||||||||||+++||..+++.+ .+...+|||.|++||+|+++|+.+|.+.+.+++|.++..|+.+++.|+|.
T Consensus 31 ven~~T~IGIk~kdGVVl~vEKli~SkLy-~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~ 109 (254)
T KOG0184|consen 31 VENSGTCIGIKCKDGVVLAVEKLITSKLY-EPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPG 109 (254)
T ss_pred HhcCCcEEEEecCCeEEEEEeeeeccccc-ccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCch
Confidence 46899999999999999999999998765 56888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLYER----RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~~~----r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
..+++.++++++.. -.|||||+.++++||.+| |+||.+||||....++.+|+|.|.+.+.+.|||.--++|+.
T Consensus 110 ~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g-~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~-- 186 (254)
T KOG0184|consen 110 KHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEG-PQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTC-- 186 (254)
T ss_pred HHHHHHHHhhhheeehhhccccccceEEEEEEeCCC-ceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccH--
Confidence 99999999998521 146999999999999655 99999999999999999999999999999999985555655
Q ss_pred HHHHHHHHHHHhccccc
Q psy2800 166 YTDVITMALEELTPVVK 182 (184)
Q Consensus 166 a~~li~~~i~~l~~~~~ 182 (184)
.|+++.+.+.|..+.+
T Consensus 187 -~e~VkeaakIiY~~HD 202 (254)
T KOG0184|consen 187 -KELVKEAAKIIYKVHD 202 (254)
T ss_pred -HHHHHHHHheeEeecc
Confidence 6678888888876643
No 34
>KOG0181|consensus
Probab=100.00 E-value=2.3e-36 Score=227.08 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=150.5
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+.+|.+.|||+-.||||||++++..+. +......+||++|.+||+|.+||+.+|.+.+++..|+.+++|...+++++|+
T Consensus 29 v~~G~~SvGi~A~nGvVlatekk~~s~-L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt 107 (233)
T KOG0181|consen 29 VVNGQTSVGIKAANGVVLATEKKDVSP-LVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPT 107 (233)
T ss_pred HhCCCCceeeeecCceEEEeccCCCCc-cchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCH
Confidence 358999999999999999999987754 5667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLYE--RR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~~--~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
..+++.++..+.+ +. .||||+++|+||||+. +|.||++||||++..|+++|+|.+...+.++||++|++++.+++
T Consensus 108 ~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd 186 (233)
T KOG0181|consen 108 TQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDD 186 (233)
T ss_pred HHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccch
Confidence 9999999999953 22 5799999999999975 59999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcccc
Q psy2800 166 YTDVITMALEELTPVV 181 (184)
Q Consensus 166 a~~li~~~i~~l~~~~ 181 (184)
++ ..|+..|++.+
T Consensus 187 ~i---htailtlkE~f 199 (233)
T KOG0181|consen 187 AI---HTAILTLKESF 199 (233)
T ss_pred HH---HHHHHHHHHHh
Confidence 75 45555555543
No 35
>KOG0183|consensus
Probab=100.00 E-value=3.3e-36 Score=229.19 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=152.6
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+.+|+|+||++++|+|||+.+++.... +...+...||..+++|++++++|+.+|++.|++++|.+|+.|+++...|+++
T Consensus 27 vrkGstaVgvrg~~~vvlgvEkkSv~~-Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtv 105 (249)
T KOG0183|consen 27 VRKGSTAVGVRGNNCVVLGVEKKSVPK-LQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTV 105 (249)
T ss_pred HhcCceEEEeccCceEEEEEeecchhh-hhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHH
Confidence 358999999999999999999987754 4566789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhh--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLL--YER--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~--~~~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.+.++|+.+. |.+ ..||||+|+|++|||++|.|+||+.||+|.|.+|++.|+|.+++.+..+||+.|.++-...+
T Consensus 106 eyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~ 185 (249)
T KOG0183|consen 106 EYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATE 185 (249)
T ss_pred HHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhccccccccc
Confidence 99999999987 322 24599999999999999999999999999999999999999999999999999998732222
Q ss_pred HHHHHHHHHHHhccccc
Q psy2800 166 YTDVITMALEELTPVVK 182 (184)
Q Consensus 166 a~~li~~~i~~l~~~~~ 182 (184)
.++|++++++|.++++
T Consensus 186 -~~~ikL~ir~LleVvq 201 (249)
T KOG0183|consen 186 -GETIKLAIRALLEVVQ 201 (249)
T ss_pred -ccHHHHHHHHHHHHhh
Confidence 4577888888877654
No 36
>KOG0178|consensus
Probab=100.00 E-value=3.8e-35 Score=222.90 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=152.6
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
.+.+|+|||.++||||||++++.+++.+-.+...+||++|+|+|+|+++|+.+|+..|++.+|..+|+|.+.+++++|++
T Consensus 29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~e 108 (249)
T KOG0178|consen 29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCE 108 (249)
T ss_pred hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 46789999999999999999999988777778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hh--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCC-hhH
Q psy2800 91 GTAEMLSLLLY--ER--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYES-EFD 165 (184)
Q Consensus 91 ~~a~~i~~~~~--~~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~~e 165 (184)
++++.++++.. .+ ..||||||+|.+|||..-+.+||+.||||++..|++.++|.++..+.+.|++.|+++.. ++|
T Consensus 109 qLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~e 188 (249)
T KOG0178|consen 109 QLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEE 188 (249)
T ss_pred HHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHH
Confidence 99999999983 22 25699999999999987669999999999999999999999999999999999999765 655
Q ss_pred HHHHHHHHHHHhccccc
Q psy2800 166 YTDVITMALEELTPVVK 182 (184)
Q Consensus 166 a~~li~~~i~~l~~~~~ 182 (184)
| ...||+.|.+.+.
T Consensus 189 A---~~laikvL~kt~d 202 (249)
T KOG0178|consen 189 A---KALAIKVLSKTLD 202 (249)
T ss_pred H---HHHHHHHHHhhcc
Confidence 5 5666777776554
No 37
>KOG0173|consensus
Probab=100.00 E-value=9.9e-34 Score=220.12 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=159.1
Q ss_pred ccccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcC
Q psy2800 5 MLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKG 84 (184)
Q Consensus 5 ~~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 84 (184)
.-+...+.|+|++|+.++||||+++|+|.+.|.++.+.++.||+.|.++|+||.+|-.+|...+.+.+..+.+.++++.+
T Consensus 29 k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~ 108 (271)
T KOG0173|consen 29 KAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTG 108 (271)
T ss_pred CCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccC
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChh
Q psy2800 85 QPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEF 164 (184)
Q Consensus 85 ~~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ 164 (184)
+.+.+-...+.+.+.|+.+. .-.++.+|+||+|..| ||||.+.|.|+....+|.++|+|+..++++||..|++||+++
T Consensus 109 R~~rVv~A~~mlkQ~LFrYq-G~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~e 186 (271)
T KOG0173|consen 109 RKPRVVTALRMLKQHLFRYQ-GHIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKE 186 (271)
T ss_pred CCCceeeHHHHHHHHHHHhc-CcccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHH
Confidence 99999999999999986432 3679999999999887 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2800 165 DYTDVITMALEE 176 (184)
Q Consensus 165 ea~~li~~~i~~ 176 (184)
||++|+..|+.+
T Consensus 187 ea~~Lv~eAi~A 198 (271)
T KOG0173|consen 187 EAIKLVCEAIAA 198 (271)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 38
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=5.2e-33 Score=211.59 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=136.2
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEc-CCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRL-PNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPG 91 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
|+|++||+++||||||+|+|.+.|.++.+.+.+||++| +|+++|++||..+|++.|.+.++.+++.|+. + + ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 78999999999999999999999999999999999999 9999999999999999999999999999983 2 2 466
Q ss_pred HHHHHHHHHHhhc-CCCeeEEEEEEEEcCCCceeEEEECCCCceeee--CeEEEecCHHHHHHHHhcccC-CCCChhHHH
Q psy2800 92 TAEMLSLLLYERR-IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKV--AYRLHGTSAKFMLASMSYLLS-PYESEFDYT 167 (184)
Q Consensus 92 ~a~~i~~~~~~~r-~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~s~~ea~ 167 (184)
.++.++.+.. .+ .+|+.+++|++ |. |+||.+|+.|++.+. +++|+|+|+.+++++||+.|+ ++| ||.
T Consensus 76 ~a~l~~~l~~-~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~ 146 (172)
T PRK05456 76 AVELAKDWRT-DRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAE 146 (172)
T ss_pred HHHHHHHHHh-ccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHH
Confidence 6665544432 23 24888999994 42 799999999998655 899999999999999999999 999 999
Q ss_pred HHHHHHHHHhcccc
Q psy2800 168 DVITMALEELTPVV 181 (184)
Q Consensus 168 ~li~~~i~~l~~~~ 181 (184)
+++++|+++..+|.
T Consensus 147 ~la~kai~~A~~Rd 160 (172)
T PRK05456 147 EIAEKALKIAADIC 160 (172)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988775
No 39
>KOG0185|consensus
Probab=100.00 E-value=1.1e-33 Score=217.84 Aligned_cols=175 Identities=23% Similarity=0.273 Sum_probs=164.8
Q ss_pred ccccccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHH-H
Q psy2800 3 EAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSA-E 81 (184)
Q Consensus 3 ~~~~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~ 81 (184)
+++++|++ .|+++||+|++|||+||+|+..++|++....+.+++|+++||+++|+||..+|+|.+.+.+.....+.+ +
T Consensus 32 qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~ 110 (256)
T KOG0185|consen 32 QRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRL 110 (256)
T ss_pred ccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccc
Confidence 45778888 999999999999999999999999999889999999999999999999999999999999998877754 6
Q ss_pred hcCCCCChHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccC-
Q psy2800 82 AKGQPLSLPGTAEMLSLLLYERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLS- 158 (184)
Q Consensus 82 ~~~~~~~~~~~a~~i~~~~~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~- 158 (184)
..++.+.|+.+.+++..+||.+| +.|+...++|||+|.+|+|+|-.+|-.|...+.+..|+|.|...+.++|++.|+
T Consensus 111 ~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~ 190 (256)
T KOG0185|consen 111 DDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEK 190 (256)
T ss_pred ccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhc
Confidence 67799999999999999999988 789999999999998899999999999999999999999999999999999998
Q ss_pred --CCCChhHHHHHHHHHHHHhc
Q psy2800 159 --PYESEFDYTDVITMALEELT 178 (184)
Q Consensus 159 --~~~s~~ea~~li~~~i~~l~ 178 (184)
++++.+||+++|++|++.|.
T Consensus 191 k~~~~s~eeA~~li~~cMrVL~ 212 (256)
T KOG0185|consen 191 KGEDLSREEAEALIEKCMRVLY 212 (256)
T ss_pred cchhhHHHHHHHHHHHHHHHHh
Confidence 47999999999999999986
No 40
>KOG0180|consensus
Probab=100.00 E-value=1e-32 Score=203.80 Aligned_cols=169 Identities=25% Similarity=0.386 Sum_probs=161.4
Q ss_pred ccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCC
Q psy2800 7 EHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQP 86 (184)
Q Consensus 7 ~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 86 (184)
++++.+|++++|++++|+|.||+|.|........+.+.+|||+++|++++|.+|+..|++.+.++++...+.|+++++++
T Consensus 2 ~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~ 81 (204)
T KOG0180|consen 2 SIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREERE 81 (204)
T ss_pred cceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcc
Confidence 46778999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCcee-eeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 87 LSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCE-KVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 87 ~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
|.|+.+++.++.++|++|+.||.+..+|||+|++++|++..+|..|... +.+|.+.|.+++..++..|..|+|+|..+|
T Consensus 82 i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 82 IKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred cCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999864 689999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2800 166 YTDVITMALE 175 (184)
Q Consensus 166 a~~li~~~i~ 175 (184)
..|.+..++-
T Consensus 162 LFetisQa~L 171 (204)
T KOG0180|consen 162 LFETISQALL 171 (204)
T ss_pred HHHHHHHHHH
Confidence 9988888764
No 41
>KOG0174|consensus
Probab=100.00 E-value=2.5e-33 Score=210.49 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=158.2
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+..|+|++|+++++||||++|+|.+.|.++.++..+|+-+|.|+|+||-||.++|.|.+.+.++-.+..|..++++++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHH
Q psy2800 90 PGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDV 169 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~l 169 (184)
...++.++++.|++|. -+.+.+||||||++-+.++|.+---|...+.+++.-|+||.+++++++..|+++|+.+|+.++
T Consensus 96 ~~aA~l~r~~~Y~~re-~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~f 174 (224)
T KOG0174|consen 96 HTAASLFREICYNYRE-MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRF 174 (224)
T ss_pred HHHHHHHHHHHHhCHH-hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHH
Confidence 9999999999998772 478999999999876689999977788999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy2800 170 ITMALEELT 178 (184)
Q Consensus 170 i~~~i~~l~ 178 (184)
+++|+..--
T Consensus 175 vk~Av~lAi 183 (224)
T KOG0174|consen 175 VKNAVSLAI 183 (224)
T ss_pred HHHHHHHHH
Confidence 999987543
No 42
>KOG0863|consensus
Probab=100.00 E-value=8e-33 Score=212.68 Aligned_cols=168 Identities=23% Similarity=0.330 Sum_probs=149.6
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|++.||+|.++..||++-++..+. +++.++|||+|++|+++.++|+.+|++.|.+++|.+|..++..+++++++
T Consensus 29 vkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv 105 (264)
T KOG0863|consen 29 VKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV 105 (264)
T ss_pred HhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence 468999999999999999999888653 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLYE--RR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~~--~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
..++..+...++. +| .|||||.++++|||+.| |+||+++|+|.+.+++..+||+.++.+.++||+++.+.. ...
T Consensus 106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~-~~~ 183 (264)
T KOG0863|consen 106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFE-DSS 183 (264)
T ss_pred HHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHh-cCC
Confidence 9999988887741 22 35999999999999877 999999999999999999999999999999999987633 223
Q ss_pred HHHHHHHHHHHhccccc
Q psy2800 166 YTDVITMALEELTPVVK 182 (184)
Q Consensus 166 a~~li~~~i~~l~~~~~ 182 (184)
-+|||+.+|.+|+..+.
T Consensus 184 ~eELI~~gi~Alr~tlp 200 (264)
T KOG0863|consen 184 PEELIKHGIMALRETLP 200 (264)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 36789999999987764
No 43
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=100.00 E-value=3e-31 Score=197.94 Aligned_cols=161 Identities=25% Similarity=0.325 Sum_probs=151.9
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++|||++|+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|++.+++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988776578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCCeeEEEEEEEEcCCCceeEEEECCCCceeee-CeEEEecCHHHHHHHHhcccCCCCChhHHHHHHH
Q psy2800 94 EMLSLLLYERR-IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKV-AYRLHGTSAKFMLASMSYLLSPYESEFDYTDVIT 171 (184)
Q Consensus 94 ~~i~~~~~~~r-~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~ 171 (184)
+.+++.++..| .+|+++++|+||+|+ ++|+||.+||+|++.++ +++++|+++..+.++|++.|+++++.+|+.+++.
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELAL 159 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999998765 379999999999997 66999999999999999 9999999999999999999999999999998888
Q ss_pred HHHH
Q psy2800 172 MALE 175 (184)
Q Consensus 172 ~~i~ 175 (184)
.|++
T Consensus 160 ~~l~ 163 (164)
T cd01901 160 KALK 163 (164)
T ss_pred HHHh
Confidence 8775
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=1.3e-31 Score=202.77 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=128.8
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCC-ceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPN-QTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|+| |++|++||..+|+++|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 689999999999999999999999999999999999999 999999999999999999999999999988774 44
Q ss_pred HHHHHHHHHhhcCCCee-EEEEEEEEcCCCceeEEEECCCCceeee--CeEEEecCHHHHHHHHhcccCCC-CChhHHHH
Q psy2800 93 AEMLSLLLYERRIFPYY-VQVLLVGIDGTGKGGVYSYDPVGHCEKV--AYRLHGTSAKFMLASMSYLLSPY-ESEFDYTD 168 (184)
Q Consensus 93 a~~i~~~~~~~r~~P~~-~s~lv~G~d~~g~p~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~-~s~~ea~~ 168 (184)
++.+..++ ..|.+|+. +.+|++++ ++||.+||.|.+.++ +++++|+|+.+++++||..|+++ |+ +++
T Consensus 76 a~l~~~l~-~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~ 146 (171)
T cd01913 76 VELAKDWR-TDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEE 146 (171)
T ss_pred HHHHHHHH-hccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHH
Confidence 55555443 22444666 66666433 499999999999887 49999999999999999999995 99 457
Q ss_pred HHHHHHHHhcc
Q psy2800 169 VITMALEELTP 179 (184)
Q Consensus 169 li~~~i~~l~~ 179 (184)
++.+|++.--+
T Consensus 147 la~~Av~~A~~ 157 (171)
T cd01913 147 IARKALKIAAD 157 (171)
T ss_pred HHHHHHHHHHh
Confidence 77777765443
No 45
>KOG0175|consensus
Probab=100.00 E-value=2.7e-32 Score=212.59 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=158.2
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
.+|+|++|.+++.|||+|+|+|.+.|.+|-+...+||.+|+++++-+.+|-++|++...+.+..+|+.|++++++.+++.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHH
Q psy2800 91 GTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVI 170 (184)
Q Consensus 91 ~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li 170 (184)
..++.+++++|++|.--+.+..+|+|||+.| |.||++|..|+....+-.++|+|+.+|+++|+..|+.||+.+||.+|.
T Consensus 149 aASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~ 227 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLA 227 (285)
T ss_pred HHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHH
Confidence 9999999999998855677889999999887 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2800 171 TMALEE 176 (184)
Q Consensus 171 ~~~i~~ 176 (184)
+.||-.
T Consensus 228 rrAI~h 233 (285)
T KOG0175|consen 228 RRAIYH 233 (285)
T ss_pred HHHHHH
Confidence 998753
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.2e-30 Score=197.58 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=127.0
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEc-CCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRL-PNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
+|+|||+++||||||+|+|.+.|.++.+++.+||++| +|+++|+++|..+|+++|.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999999999999999999999 599999999999999999999999999988643 3666
Q ss_pred HHHHHHHHHhhcCCCee-EEEEEEEEcCCCceeEEEECCCCceeee--CeEEEecCHHHHHHHHhcccC-CCCChhHHHH
Q psy2800 93 AEMLSLLLYERRIFPYY-VQVLLVGIDGTGKGGVYSYDPVGHCEKV--AYRLHGTSAKFMLASMSYLLS-PYESEFDYTD 168 (184)
Q Consensus 93 a~~i~~~~~~~r~~P~~-~s~lv~G~d~~g~p~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~s~~ea~~ 168 (184)
++.++.+. ..++.|+. +.+|++++ ++||.+||.|.+.++ +++++|+|+.+++++||..|+ ++|+ |++
T Consensus 76 a~l~~~~~-~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~ 146 (171)
T TIGR03692 76 VELAKDWR-TDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEE 146 (171)
T ss_pred HHHHHHHh-hcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHH
Confidence 77766632 22333444 66666532 499999999999886 699999999999999999995 6666 788
Q ss_pred HHHHHHHHhcc
Q psy2800 169 VITMALEELTP 179 (184)
Q Consensus 169 li~~~i~~l~~ 179 (184)
++.+|++.--+
T Consensus 147 la~~Av~~A~~ 157 (171)
T TIGR03692 147 IAREALKIAAD 157 (171)
T ss_pred HHHHHHHHHHh
Confidence 88888776543
No 47
>KOG0182|consensus
Probab=99.97 E-value=1.3e-29 Score=192.78 Aligned_cols=169 Identities=20% Similarity=0.227 Sum_probs=150.7
Q ss_pred ccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy2800 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLS 88 (184)
Q Consensus 9 ~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 88 (184)
..+.|-|+||++++|++|+++.++.+.+ ++.+++...+|+|+++|+|+++|..+|++..+.++|.++.++++++|.+||
T Consensus 32 in~~gltsVavrgkDcavvvsqKkvpDK-Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp 110 (246)
T KOG0182|consen 32 INQAGLTSVAVRGKDCAVVVTQKKVPDK-LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMP 110 (246)
T ss_pred hhcCCCceEEEcCCceEEEEecccCccc-ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCC
Confidence 3445889999999999999999999876 456788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCC--
Q psy2800 89 LPGTAEMLSLLL--YERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYES-- 162 (184)
Q Consensus 89 ~~~~a~~i~~~~--~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-- 162 (184)
++.|+++++++- |.++ +||+||.+++.|+|++.+|.+|..||.|.+..++++|.|-....+.++||++|+++..
T Consensus 111 ~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t 190 (246)
T KOG0182|consen 111 CDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLT 190 (246)
T ss_pred HHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCccch
Confidence 999999999987 4444 7799999999999998779999999999999999999999999999999999999844
Q ss_pred hhHHHHHHHHHHHHhcccc
Q psy2800 163 EFDYTDVITMALEELTPVV 181 (184)
Q Consensus 163 ~~ea~~li~~~i~~l~~~~ 181 (184)
.+| ++..++.+|..++
T Consensus 191 ~~e---~ve~ai~al~~sl 206 (246)
T KOG0182|consen 191 FEE---TVETAISALQSSL 206 (246)
T ss_pred HHH---HHHHHHHHHHHHH
Confidence 544 5566666666554
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-15 Score=112.44 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=122.3
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCC-ceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPN-QTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
.+++|+++++-++-|+||+|.++|.|..+++.+.+|+.+|.+ .++.|++|..+|+..|.++++.+++.|.-+--+ ..
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HH
Confidence 378999999999999999999999999999999999988886 799999999999999999999999988621111 33
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCcee-e-eCeEEEecCHHHHHHHHhcccCCCCChhHHH
Q psy2800 90 PGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCE-K-VAYRLHGTSAKFMLASMSYLLSPYESEFDYT 167 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~-~-~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~ 167 (184)
..+++.+++--|.+ -+.+-+||+ |+ -.+|-+...|... + .+.+|||||..++++..+..++. +..+|.
T Consensus 80 velaKdwr~Dk~lr---~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~--~~lsA~ 149 (178)
T COG5405 80 VELAKDWRTDKYLR---KLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN--TELSAR 149 (178)
T ss_pred HHHHHhhhhhhHHH---HHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc--cCCCHH
Confidence 44555555433433 356778887 64 3688888899754 3 45999999999999988888755 234567
Q ss_pred HHHHHHHHHh
Q psy2800 168 DVITMALEEL 177 (184)
Q Consensus 168 ~li~~~i~~l 177 (184)
|+++++++.-
T Consensus 150 eIa~~sl~iA 159 (178)
T COG5405 150 EIAEKSLKIA 159 (178)
T ss_pred HHHHHHHhhh
Confidence 8888888764
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.9e-08 Score=77.21 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=115.2
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcC---Cc-eEEEEecChhHHHHHHHHHHHHHHHHHHhc-CCCC
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLP---NQ-TAVGISGNMADSLEVVSRLQAEINRSAEAK-GQPL 87 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~-~~~~ 87 (184)
++-|||++-..|.|+++|+|...|.- .-+..+|+|... |+ ++++.+|..+=.|.+++.+.+..+...-.. -.-+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 46799999999999999999877632 235778876554 44 667889999999999999988876322111 1224
Q ss_pred ChHHHHHHHHHHHH---hh-c------CCCeeEEEEEEEEcCCCceeEEEECCCCcee----eeCeEEEecCHHHHHHHH
Q psy2800 88 SLPGTAEMLSLLLY---ER-R------IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCE----KVAYRLHGTSAKFMLASM 153 (184)
Q Consensus 88 ~~~~~a~~i~~~~~---~~-r------~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~----~~~~~aiG~g~~~~~~~L 153 (184)
+.-+.+..+....- .+ + .--|.||+|+||.-..+.|+||.+-|.|++. +.+|.-||. +..-+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhh
Confidence 55555555555542 11 1 2357899999999876678999999999986 468999998 46779999
Q ss_pred hcccCCCCChhHHHH
Q psy2800 154 SYLLSPYESEFDYTD 168 (184)
Q Consensus 154 e~~~~~~~s~~ea~~ 168 (184)
++.+..+++++|+..
T Consensus 159 dR~i~~~~pLeea~k 173 (255)
T COG3484 159 DRTITYDTPLEEAAK 173 (255)
T ss_pred hhhhhccCCHHHHhh
Confidence 999999999987643
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.39 E-value=0.29 Score=37.84 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=75.9
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
|+-+||--+++|.|+|+|+|. ++|-|.-.....|-+.+ | .|+--+=+.|
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEeeL------Y---sG~IktdeEL 49 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEEL------Y---SGKIKTDEEL 49 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHHH------h---CCccCCHHHH
Confidence 567999999999999999873 23445555444444332 1 3444444555
Q ss_pred HHHHHHH---HH--hhc--CCCeeEEEEEEEE------cCCCceeEEEECCCCcee-------eeCeEEEecCH------
Q psy2800 93 AEMLSLL---LY--ERR--IFPYYVQVLLVGI------DGTGKGGVYSYDPVGHCE-------KVAYRLHGTSA------ 146 (184)
Q Consensus 93 a~~i~~~---~~--~~r--~~P~~~s~lv~G~------d~~g~p~Ly~id~~G~~~-------~~~~~aiG~g~------ 146 (184)
.+....+ ++ ..| .+-.+- +|+|-+ +.. .-++|-. .|.+. +..-...|.++
T Consensus 50 ~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~sk-RRRiY~t--~g~~~Ivei~~~~i~~~~~g~~sgiIVfG 125 (194)
T PF09894_consen 50 LKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSK-RRRIYAT--KGKYAIVEIENDEITNKSRGEGSGIIVFG 125 (194)
T ss_pred HHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccce-eeEEEec--CCCEEEEEecCCeEEEEecCCceeEEEEC
Confidence 4443332 11 111 111121 344333 322 2466653 34432 12223334443
Q ss_pred -----HHHHHHHhcccCCCCChhHHHHHHHHHHHHh
Q psy2800 147 -----KFMLASMSYLLSPYESEFDYTDVITMALEEL 177 (184)
Q Consensus 147 -----~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l 177 (184)
+.+...|.++|++.|++.++.+++..+++.+
T Consensus 126 Nk~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~ 161 (194)
T PF09894_consen 126 NKFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEV 161 (194)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999987
No 51
>KOG3361|consensus
Probab=90.00 E-value=0.51 Score=34.32 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=40.1
Q ss_pred EEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHH
Q psy2800 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDV 169 (184)
Q Consensus 126 y~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~l 169 (184)
..+|.+|.+++.+|-..|.||..+-+.+-..|-+.++++|+..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 57888999999999999999999999999999999999987643
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.83 E-value=28 Score=28.15 Aligned_cols=133 Identities=20% Similarity=0.191 Sum_probs=75.4
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
++-+|+--++||.|+|.|+|. +.+-|.-.|-..|-+.+ -.|.--|-+.+
T Consensus 1 MtLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEekL---------YsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHHh---------hcCccccHHHH
Confidence 467899999999999999874 13445555655554433 13554555566
Q ss_pred HHHHHHHH-----Hhhc--CCCeeEEEEEEEEcCCC-----ceeEEEECCCCcee-------ee---------CeEEEec
Q psy2800 93 AEMLSLLL-----YERR--IFPYYVQVLLVGIDGTG-----KGGVYSYDPVGHCE-------KV---------AYRLHGT 144 (184)
Q Consensus 93 a~~i~~~~-----~~~r--~~P~~~s~lv~G~d~~g-----~p~Ly~id~~G~~~-------~~---------~~~aiG~ 144 (184)
+++...+= ..-| .+...-++++|-+..-+ .-++|.. .|++. +. ...+.|.
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gn 127 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGN 127 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECc
Confidence 55544431 0001 11222223333333211 1245543 33331 11 2222232
Q ss_pred C--HHHHHHHHhcccCCCCChhHHHHHHHHHHHHhc
Q psy2800 145 S--AKFMLASMSYLLSPYESEFDYTDVITMALEELT 178 (184)
Q Consensus 145 g--~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~ 178 (184)
. -+.+..+|.+.|.+.+++.++.+++..+++.+.
T Consensus 128 k~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vs 163 (293)
T COG4079 128 KFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVS 163 (293)
T ss_pred HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhh
Confidence 1 234668889999999999999999999998876
No 53
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=66.98 E-value=63 Score=25.73 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=50.6
Q ss_pred eEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHH---------HHHHHHHHH-HhcC
Q psy2800 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR---------LQAEINRSA-EAKG 84 (184)
Q Consensus 15 t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~---------~~~~~~~~~-~~~~ 84 (184)
..+.+..-+...||.-..... .-.++.|..-|+|+|.+.|.....-.|.+. +.--++-|+ ++.+
T Consensus 44 ~a~s~~~g~~~~lAys~~~~~------~l~pR~F~~~DdIfCiF~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDR 117 (228)
T PF12481_consen 44 NAFSMNFGDSAALAYSHSNQS------SLHPRLFAGVDDIFCIFLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDR 117 (228)
T ss_pred CeEEEEcCCCEEEEEecCCCC------ccccccccccCCEEEEEecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhcc
Confidence 567888888888886433221 245888999999999999998777766643 122234455 4444
Q ss_pred CCCChHHHHHHHHH
Q psy2800 85 QPLSLPGTAEMLSL 98 (184)
Q Consensus 85 ~~~~~~~~a~~i~~ 98 (184)
-|-|.+++++.+..
T Consensus 118 gPyPadqvv~~L~G 131 (228)
T PF12481_consen 118 GPYPADQVVKDLEG 131 (228)
T ss_pred CCCChHHHHHhccC
Confidence 55566666555443
No 54
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=49.16 E-value=13 Score=21.69 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=23.4
Q ss_pred EEecCHHHHHHHHhccc-CCCCChhHHHHHHHHHHHHh
Q psy2800 141 LHGTSAKFMLASMSYLL-SPYESEFDYTDVITMALEEL 177 (184)
Q Consensus 141 aiG~g~~~~~~~Le~~~-~~~~s~~ea~~li~~~i~~l 177 (184)
+.|+....+...+++.. .++++. .++|+.|++.|
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~---e~~ik~aLk~L 46 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDV---EELIKQALKLL 46 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-H---HHHHHHHHCCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHhhc
Confidence 35777788888888776 677765 56788888765
No 55
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=43.44 E-value=56 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy2800 67 EVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLL 100 (184)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~ 100 (184)
.++.++| .|...++..++++.+.+.+++.+
T Consensus 47 evv~fvR----~fy~ef~tsPaiRMLvK~~~~~~ 76 (111)
T COG2920 47 EVVRFVR----EFYEEFNTSPAIRMLVKAMAKKL 76 (111)
T ss_pred HHHHHHH----HHHHHHCCCchHHHHHHHHHHHh
Confidence 4555555 55667788899999999888766
No 56
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=42.86 E-value=79 Score=23.45 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=42.5
Q ss_pred eEE-EECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHhc
Q psy2800 124 GVY-SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178 (184)
Q Consensus 124 ~Ly-~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~ 178 (184)
.|| .+| .|.+.+..|-..|.+...+-+-+=..+=++.|.+||.++.....+.++
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444 345 888999999999999998888777777788999999988855555444
No 57
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=41.89 E-value=37 Score=20.13 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.5
Q ss_pred EEECCCCceeeeCeEEEecCHHHHHHHHhccc
Q psy2800 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLL 157 (184)
Q Consensus 126 y~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~ 157 (184)
|.|+|+|.+...--...|.....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988877888888888888887754
No 58
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=39.90 E-value=61 Score=21.72 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=28.7
Q ss_pred HHHHHHHhcccCCCCChhHHHHHHHHHHHHhcc
Q psy2800 147 KFMLASMSYLLSPYESEFDYTDVITMALEELTP 179 (184)
Q Consensus 147 ~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~~ 179 (184)
..+..+|++.-.+++|+++..++=+.++..|+.
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL~e 64 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFL 64 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999998888764
No 59
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=38.18 E-value=70 Score=20.21 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q psy2800 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLS 97 (184)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 97 (184)
.+.+++.........|++++.+.+|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 34555566667777899999999998753
No 60
>PRK11325 scaffold protein; Provisional
Probab=37.91 E-value=87 Score=22.36 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=37.3
Q ss_pred EECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHH
Q psy2800 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176 (184)
Q Consensus 127 ~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~ 176 (184)
.+|+.|.+.+..|.+.|.+...+-..+=..+=++.+++|+.++....+..
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~ 95 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAE 95 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHH
Confidence 55557889999999999887776655555556777899988887765544
No 61
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=37.58 E-value=1e+02 Score=21.69 Aligned_cols=36 Identities=8% Similarity=-0.046 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy2800 61 NMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLL 100 (184)
Q Consensus 61 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~ 100 (184)
+..|--.+++++|+ |..+++..++++.+++.+...+
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 44555678888875 4455688899999998876644
No 62
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=33.83 E-value=31 Score=24.56 Aligned_cols=48 Identities=27% Similarity=0.368 Sum_probs=23.1
Q ss_pred ECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHhcc
Q psy2800 128 YDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTP 179 (184)
Q Consensus 128 id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~~ 179 (184)
+|++|+....+-.-.|... .++--....+....+..|+++.|++.+++
T Consensus 11 ~~~dGsv~~T~ViL~~~dG----a~ip~~L~~D~~~ks~~ELi~~ale~iy~ 58 (116)
T PF07104_consen 11 YDPDGSVSKTKVILTNDDG----AYIPVFLPGDKIDKSNTELIELALEMIYQ 58 (116)
T ss_pred cCCCCCeeeeEEEEEcCCC----cEEEeeCChhhhcCCHHHHHHHHHHHHHH
Confidence 4555555555444444441 11122233343444445667777766654
No 63
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.71 E-value=55 Score=25.24 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=30.1
Q ss_pred eEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHhccc
Q psy2800 139 YRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 139 ~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~~~ 180 (184)
-.+.|.....+...+++...++++. .++++.|++.|.+|
T Consensus 150 L~~LGy~~~ea~~av~~~~~~~~~~---e~lik~ALk~l~~~ 188 (188)
T PRK14606 150 LVSLGYPEKQAREAVKHVYREGMKT---SELIKEALKFLSQR 188 (188)
T ss_pred HHHcCCCHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcC
Confidence 4578999999999888876555554 67899999998654
No 64
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=31.87 E-value=94 Score=19.91 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=28.3
Q ss_pred EecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHhc
Q psy2800 142 HGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178 (184)
Q Consensus 142 iG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~ 178 (184)
-|+....+..+|+..|+-+.+.......++.+|+.+-
T Consensus 20 ~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v 56 (77)
T PF00538_consen 20 KGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGV 56 (77)
T ss_dssp SSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHH
Confidence 3677788999999999766666556777888877654
No 65
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=31.82 E-value=1.4e+02 Score=20.86 Aligned_cols=36 Identities=11% Similarity=-0.011 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy2800 61 NMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLL 100 (184)
Q Consensus 61 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~ 100 (184)
+..+--.+++++|. |..+++..++++.+.+.+...+
T Consensus 38 LT~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 38 LTEAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 44555678888875 4455688899999998877654
No 66
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=30.12 E-value=36 Score=28.11 Aligned_cols=53 Identities=19% Similarity=0.104 Sum_probs=37.4
Q ss_pred EEcCC-CceeEEEECCCCceeeeCeEEEecC-HHHHHHHHhcccCC-CCChhHHHHHHH
Q psy2800 116 GIDGT-GKGGVYSYDPVGHCEKVAYRLHGTS-AKFMLASMSYLLSP-YESEFDYTDVIT 171 (184)
Q Consensus 116 G~d~~-g~p~Ly~id~~G~~~~~~~~aiG~g-~~~~~~~Le~~~~~-~~s~~ea~~li~ 171 (184)
|.|+. |.+-....-..|-|... ..|.. -.-..+.|-+.|.+ ++|+++|+.|+.
T Consensus 79 G~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLs 134 (298)
T COG1754 79 GIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLS 134 (298)
T ss_pred ccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHc
Confidence 77854 66666666666765543 55666 55667778888887 799999887764
No 67
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=29.48 E-value=28 Score=23.83 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=11.5
Q ss_pred CCceeEEEECCCCceeee
Q psy2800 120 TGKGGVYSYDPVGHCEKV 137 (184)
Q Consensus 120 ~g~p~Ly~id~~G~~~~~ 137 (184)
+|.+++|.+.|.|.++..
T Consensus 52 ~g~~RiYiVEPtG~~EdD 69 (100)
T PF12120_consen 52 EGRGRIYIVEPTGPFEDD 69 (100)
T ss_dssp SS--EEEEEEESS--EE-
T ss_pred CCCCcEEEEccCCCcccC
Confidence 577899999999999864
No 68
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=29.26 E-value=1e+02 Score=18.29 Aligned_cols=30 Identities=13% Similarity=-0.089 Sum_probs=20.1
Q ss_pred HHHHhcccCCCCChhHHHHHHHHHHHHhcc
Q psy2800 150 LASMSYLLSPYESEFDYTDVITMALEELTP 179 (184)
Q Consensus 150 ~~~Le~~~~~~~s~~ea~~li~~~i~~l~~ 179 (184)
..++++.=++++|++++.++...+++.++.
T Consensus 9 e~Iv~~Le~~~~sLdes~~lyeeg~~l~~~ 38 (53)
T PF02609_consen 9 EEIVEKLESGELSLDESLKLYEEGMELIKK 38 (53)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 344445546799999999988888887763
No 69
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=27.11 E-value=1.2e+02 Score=19.79 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.2
Q ss_pred HHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 146 AKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 146 ~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
.+.|..+|+.....+++.++..++|..|
T Consensus 51 ~elA~~il~~f~~~di~~~~L~~ii~~A 78 (79)
T PF14821_consen 51 AELAFEILSPFLGDDIPEEELKEIIEKA 78 (79)
T ss_dssp HHHHHHHHHHHCCCCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 5678899999988999999998888876
No 70
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=26.59 E-value=1.3e+02 Score=21.23 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=35.0
Q ss_pred EEECCC-CceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHH
Q psy2800 126 YSYDPV-GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174 (184)
Q Consensus 126 y~id~~-G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i 174 (184)
..+|.+ |.+.+..|.+.|.+-..+-.-+=..+=.+.+++|+.++...-+
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i 91 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDI 91 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHH
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567877 8899999999999877766544444456678888876654333
No 71
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=25.13 E-value=1.7e+02 Score=20.65 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=35.8
Q ss_pred EECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHH
Q psy2800 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176 (184)
Q Consensus 127 ~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~ 176 (184)
.+|..|.+.+..|.+.|.....+-.-+=..+=++.+++|+.++....+..
T Consensus 44 ~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i~~~~i~~ 93 (124)
T TIGR01999 44 KVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKIKNTEIAK 93 (124)
T ss_pred EECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhccHHHHHH
Confidence 44656888999999999887776654444445677889988887765443
No 72
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=25.00 E-value=2e+02 Score=19.96 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=36.6
Q ss_pred EECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHh
Q psy2800 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177 (184)
Q Consensus 127 ~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l 177 (184)
.+|. |.+.+..|.+.|.+...+-..+=..+-.+.+.+|+.+++..-+..+
T Consensus 42 ~i~~-~~I~d~~f~~~GC~i~~Asas~~~~~~~Gk~~~ea~~i~~~~~~~~ 91 (123)
T cd06664 42 KVED-GRITDAKFQGFGCAISIASASLLTELIKGKTLDEALKLLNKDIAML 91 (123)
T ss_pred EEcC-CEEEEEEEEecCcHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 3443 7888889998888877665544444456779999999998877765
No 73
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=24.91 E-value=1e+02 Score=22.58 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecC
Q psy2800 66 LEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTS 145 (184)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g 145 (184)
..+++.+...+.+.....+.+++-..+...|+..+-.++- .+ .-|.+.|.+.|. ..
T Consensus 20 ~~~lr~~~a~i~~~e~~~~~~l~d~~v~~vi~k~iKqr~e---a~----e~y~~agR~dla-----------------e~ 75 (143)
T PF09424_consen 20 LNTLRMLLAAIKNAEKDKGRELTDEEVIAVIRKEIKQRKE---AA----EQYEKAGRPDLA-----------------EK 75 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHH---HH----HHHHHHT-HHHH-----------------HH
T ss_pred HHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH---HH----HHHHHCCCHHHH-----------------HH
Confidence 3556777778888888888888888888888887743330 00 000001111110 01
Q ss_pred HHHHHHHHhcccCCCCChhHHHHHHHHHHHHhc
Q psy2800 146 AKFMLASMSYLLSPYESEFDYTDVITMALEELT 178 (184)
Q Consensus 146 ~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~ 178 (184)
...=..+|+.+.++.||.+|...+|..++..+.
T Consensus 76 e~~Ei~iL~~yLP~~lseeEi~~~v~~~i~e~g 108 (143)
T PF09424_consen 76 EQAEIEILEEYLPKQLSEEEIEAIVEEAIAELG 108 (143)
T ss_dssp HHHHHHHHGGGS-----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHhC
Confidence 344568999999999999999999999998875
No 74
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.18 E-value=1.3e+02 Score=18.52 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=28.1
Q ss_pred HHHHHHHHhcccCCCCChhHHHHHHHHHHHHhccc
Q psy2800 146 AKFMLASMSYLLSPYESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 146 ~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~~~ 180 (184)
.+.+..-+.+...+.||--||+.++...|++-++.
T Consensus 13 QQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~ 47 (60)
T COG3140 13 QQKAVERIQELMAEGMSSGEAIALVAQELRENHKG 47 (60)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHhcc
Confidence 35566777888888999999999999988876653
No 75
>KOG3652|consensus
Probab=23.03 E-value=1.1e+02 Score=28.62 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=52.8
Q ss_pred HhcCCCCChHHHHHHHHHHHHhhc-----CCCeeEEEEEEEEcCCCceeEEEECCCCcee--eeCeEEEecCHHHHHHHH
Q psy2800 81 EAKGQPLSLPGTAEMLSLLLYERR-----IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCE--KVAYRLHGTSAKFMLASM 153 (184)
Q Consensus 81 ~~~~~~~~~~~~a~~i~~~~~~~r-----~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~--~~~~~aiG~g~~~~~~~L 153 (184)
...|+++...++.++.+.++.... -+|.-+++++ +| |.||..|--|.-. ++-..|. ..++.-=
T Consensus 209 KksgEeIl~a~LS~FY~ll~Q~Lq~kdyvchpmLasl~l-----n~-p~LFccdLkGId~llP~Fi~AL----d~il~dr 278 (1215)
T KOG3652|consen 209 KKSGEEILNAQLSNFYALLFQCLQEKDYVCHPMLASLFL-----NG-PNLFCCDLKGIDSLLPHFIFAL----DIILIDR 278 (1215)
T ss_pred ccCcccccHHHHHHHHHHHHHHHhhcccccchhheeeee-----cC-CceeeecCCchhHhhHHHHHHH----HhhhccH
Confidence 346889999999999888774221 1366666655 45 9999999988532 2221111 1111000
Q ss_pred hcccCCCCChhHHHHHHHHHHHHhcccccCC
Q psy2800 154 SYLLSPYESEFDYTDVITMALEELTPVVKVP 184 (184)
Q Consensus 154 e~~~~~~~s~~ea~~li~~~i~~l~~~~~~~ 184 (184)
++ .++.-+..+-.|+=+.||++|...+-.|
T Consensus 279 e~-~rkfkS~~n~tElRRa~in~LlSli~lP 308 (1215)
T KOG3652|consen 279 EK-LRKFKSISNETELRRACINALLSLICLP 308 (1215)
T ss_pred HH-hhhccccCCHHHHHHHHHHHHHHhccCc
Confidence 11 1122223333677889999987665443
No 76
>cd01678 PFL1 Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.
Probab=22.41 E-value=90 Score=29.44 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=34.8
Q ss_pred CeEEEecCHHHHHHHHhcccCCC-CChhHHHHHHHHHHHHhcc
Q psy2800 138 AYRLHGTSAKFMLASMSYLLSPY-ESEFDYTDVITMALEELTP 179 (184)
Q Consensus 138 ~~~aiG~g~~~~~~~Le~~~~~~-~s~~ea~~li~~~i~~l~~ 179 (184)
.+.+.|.=.++..+++++-..+. +|+++|+||+..-+-.+..
T Consensus 259 ~a~S~GR~DqyL~pyyerDl~~G~iteeeAqELid~~~iKl~~ 301 (738)
T cd01678 259 AAMSLGRVSTFLDIYIERDLKAGTITEAEAQELIDQFIMKLRM 301 (738)
T ss_pred cccCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccc
Confidence 45678999999999999988775 8999999999887655544
No 77
>TIGR01255 pyr_form_ly_1 formate acetyltransferase 1. This model describes formate acetyltransferase 1. More distantly related putative formate acetyltransferases have also been identified, including formate acetyltransferase 2 from E. coli, which is excluded from this model.
Probab=22.33 E-value=98 Score=29.21 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=35.5
Q ss_pred CeEEEecCHHHHHHHHhcccCCC-CChhHHHHHHHHHHHHhccc
Q psy2800 138 AYRLHGTSAKFMLASMSYLLSPY-ESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 138 ~~~aiG~g~~~~~~~Le~~~~~~-~s~~ea~~li~~~i~~l~~~ 180 (184)
.+.+.|.=+++..++.++-.... +|+++|+||+..-+-.|..+
T Consensus 257 ~a~S~GR~Dq~L~pYyerDl~~G~lTeeeAqELid~f~iKl~~~ 300 (744)
T TIGR01255 257 AAMSLGRTSTFLDIYIERDLARGTITEQEAQEFVDDFVLKLRTV 300 (744)
T ss_pred cccCCCccchHHHHHHHhHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 44678888999999999988775 89999999999877666543
No 78
>PF13983 YsaB: YsaB-like lipoprotein
Probab=22.05 E-value=2.3e+02 Score=18.26 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=30.7
Q ss_pred HHhcCCCCChHHHHHHHHHHHHhh--------cCCCeeEEEEEEEEcCCCceeEEEECCCCcee
Q psy2800 80 AEAKGQPLSLPGTAEMLSLLLYER--------RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCE 135 (184)
Q Consensus 80 ~~~~~~~~~~~~~a~~i~~~~~~~--------r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~ 135 (184)
+..-.+.+..+.+++.=+..-|+. .+..|.-|-=+-|+....+.++.++||+|-+.
T Consensus 9 kvsp~~sL~ME~lCk~~AA~RYnt~~q~idv~~FeqfQgSYEm~G~T~r~E~FvCSFD~dGqFL 72 (77)
T PF13983_consen 9 KVSPQRSLNMEQLCKDQAAHRYNTGAQKIDVTGFEQFQGSYEMRGYTARKEGFVCSFDADGQFL 72 (77)
T ss_pred ccCcccccCHHHHHHHHHHHhhcCCceeEeecchhhhccceEeecccccccceEEeECCCCcEE
Confidence 334445555666666555444421 12234444444555544456889999998764
No 79
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.20 E-value=1.8e+02 Score=18.10 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=13.1
Q ss_pred HHHHHHhcCCCCChHHHHHHH
Q psy2800 76 INRSAEAKGQPLSLPGTAEML 96 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~a~~i 96 (184)
+..|...+|.+||+.++++.+
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~ 35 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEAL 35 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHh
Confidence 345556679999999998865
No 80
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=20.26 E-value=56 Score=18.08 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=13.8
Q ss_pred HhcccCCCCChhHHHHHHHHHHHHhccc
Q psy2800 153 MSYLLSPYESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 153 Le~~~~~~~s~~ea~~li~~~i~~l~~~ 180 (184)
|+.++..+++++|..+.+-.....+.+.
T Consensus 1 I~~~~~~~~~l~~iA~~~g~S~~~f~r~ 28 (42)
T PF00165_consen 1 IEENLQQKLTLEDIAEQAGFSPSYFSRL 28 (42)
T ss_dssp HHTTT-SS--HHHHHHHHTS-HHHHHHH
T ss_pred CCccccCCCCHHHHHHHHCCCHHHHHHH
Confidence 4566777788877665554444444433
Done!