Query psy2800
Match_columns 184
No_of_seqs 117 out of 1024
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:17:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 5.4E-47 1.9E-51 297.1 24.3 176 5-180 1-185 (213)
2 1ryp_M 20S proteasome; multica 100.0 1.5E-46 5.3E-51 296.5 23.6 176 5-180 1-194 (222)
3 1yar_H Proteasome beta subunit 100.0 6.2E-46 2.1E-50 292.1 22.9 173 6-180 1-173 (217)
4 1iru_J 20S proteasome; cell cy 100.0 4.3E-45 1.5E-49 284.8 22.8 175 6-180 1-177 (205)
5 1ryp_J 20S proteasome; multica 100.0 2.4E-44 8.4E-49 280.3 24.2 173 7-180 2-176 (204)
6 3h4p_a Proteasome subunit beta 100.0 1.7E-44 5.9E-49 284.3 21.0 168 13-180 1-169 (219)
7 1j2q_H Proteasome beta subunit 100.0 6.1E-44 2.1E-48 277.7 22.9 166 14-180 1-167 (202)
8 1ryp_K 20S proteasome; multica 100.0 2E-43 6.8E-48 273.9 21.7 168 13-180 1-171 (198)
9 1ryp_N 20S proteasome; multica 100.0 9.7E-44 3.3E-48 282.3 20.4 170 11-180 6-187 (233)
10 1ryp_A 20S proteasome; multica 100.0 1.8E-43 6.1E-48 282.4 20.9 170 10-180 26-207 (243)
11 1g0u_M Proteasome component PR 100.0 1.5E-43 5.1E-48 286.4 20.3 177 3-180 32-220 (266)
12 1iru_K 20S proteasome; cell cy 100.0 6.2E-43 2.1E-47 271.8 22.9 168 13-180 1-170 (201)
13 1iru_N 20S proteasome; cell cy 100.0 1.2E-43 4.3E-48 279.2 19.2 170 10-180 5-179 (219)
14 1iru_L 20S proteasome; cell cy 100.0 5E-43 1.7E-47 272.9 21.8 166 14-180 1-166 (204)
15 1ryp_L 20S proteasome; multica 100.0 4.9E-43 1.7E-47 274.5 21.7 167 14-180 1-167 (212)
16 1ryp_H 20S proteasome; multica 100.0 6.1E-43 2.1E-47 272.7 22.0 169 10-180 6-174 (205)
17 1iru_H 20S proteasome; cell cy 100.0 7.3E-43 2.5E-47 272.2 21.8 166 14-180 1-166 (205)
18 1ryp_C 20S proteasome; multica 100.0 1.4E-42 4.6E-47 277.4 23.7 171 10-180 28-202 (244)
19 3nzj_K Proteasome component PR 100.0 9E-43 3.1E-47 284.1 22.1 171 10-180 72-242 (287)
20 1yar_A Proteasome alpha subuni 100.0 3.3E-42 1.1E-46 273.5 22.9 169 10-180 31-203 (233)
21 1iru_B 20S proteasome; cell cy 100.0 2.4E-42 8.2E-47 274.2 21.7 169 10-180 28-200 (233)
22 1iru_A 20S proteasome; cell cy 100.0 4.5E-42 1.5E-46 274.7 23.4 168 12-180 35-208 (246)
23 3nzj_H Proteasome component PU 100.0 3.2E-42 1.1E-46 277.6 22.3 169 9-179 25-193 (261)
24 1iru_C 20S proteasome; cell cy 100.0 3E-42 1E-46 278.0 22.0 171 10-180 28-203 (261)
25 1ryp_E 20S proteasome; multica 100.0 1.7E-42 5.8E-47 276.5 20.2 170 10-180 23-202 (242)
26 3unf_H Proteasome subunit beta 100.0 4.8E-42 1.6E-46 272.7 22.6 164 14-179 1-164 (234)
27 1ryp_D 20S proteasome; multica 100.0 5.9E-42 2E-46 273.3 22.4 170 10-179 25-202 (241)
28 1iru_D 20S proteasome; cell cy 100.0 7.2E-42 2.5E-46 273.9 22.0 169 10-179 26-200 (248)
29 1ryp_I 20S proteasome; multica 100.0 9.2E-42 3.1E-46 269.2 22.2 163 14-178 1-163 (222)
30 1iru_E 20S proteasome; cell cy 100.0 5E-42 1.7E-46 273.7 20.8 169 10-180 31-208 (241)
31 1iru_G 20S proteasome; cell cy 100.0 6.2E-42 2.1E-46 275.2 21.1 169 10-179 30-202 (254)
32 1q5q_H Proteasome beta-type su 100.0 1.4E-41 4.7E-46 270.3 22.3 166 14-179 1-176 (235)
33 1j2p_A Alpha-ring, proteasome 100.0 3.5E-41 1.2E-45 269.6 22.9 168 10-180 31-202 (246)
34 3nzj_F Proteasome component C1 100.0 2.1E-41 7.2E-46 276.1 22.0 169 11-181 32-207 (288)
35 3h4p_A Proteasome subunit alph 100.0 6.1E-42 2.1E-46 276.6 18.5 168 11-180 36-207 (264)
36 1ryp_G 20S proteasome; multica 100.0 2.3E-41 7.7E-46 270.4 21.5 169 10-180 27-202 (244)
37 1q5r_H Proteasome beta-type su 100.0 2.3E-41 7.8E-46 276.6 21.8 170 10-179 62-241 (294)
38 1ryp_B 20S proteasome; multica 100.0 2.2E-41 7.5E-46 271.3 21.3 170 10-180 28-202 (250)
39 1iru_I 20S proteasome; cell cy 100.0 4.4E-41 1.5E-45 267.3 22.6 163 14-178 1-163 (234)
40 3mi0_A Proteasome subunit alph 100.0 9.4E-41 3.2E-45 267.2 21.6 160 11-178 25-192 (248)
41 2jay_A Proteasome; hydrolase; 100.0 4.8E-41 1.7E-45 274.4 19.5 170 10-179 54-233 (291)
42 1ryp_F 20S proteasome; multica 100.0 1.2E-40 4E-45 264.5 19.4 162 10-175 28-197 (233)
43 3unf_N Proteasome subunit beta 100.0 1.8E-40 6.2E-45 257.4 19.5 164 14-180 1-165 (199)
44 1iru_F 20S proteasome; cell cy 100.0 1.7E-40 5.8E-45 268.0 19.9 167 10-180 29-201 (263)
45 1q5q_A Proteasome alpha-type s 100.0 2E-39 6.8E-44 261.2 20.0 161 10-178 24-192 (259)
46 2z3b_A ATP-dependent protease 100.0 3.1E-35 1.1E-39 225.0 16.5 156 11-180 3-166 (180)
47 1m4y_A ATP-dependent protease 100.0 7.1E-35 2.4E-39 221.1 17.6 153 14-180 1-158 (171)
48 1g3k_A ATP-dependent protease 100.0 7.2E-35 2.5E-39 221.7 16.8 153 14-180 1-159 (174)
49 1yx3_A Hypothetical protein DS 40.0 58 0.002 22.7 5.1 36 61-100 62-97 (132)
50 1sau_A Sulfite reductase, desu 32.6 60 0.0021 22.1 4.1 36 61-100 46-81 (115)
51 1qzv_F Plant photosystem I: su 27.8 86 0.0029 21.8 4.2 23 102-126 50-72 (154)
52 2hw2_A Rifampin ADP-ribosyl tr 27.2 22 0.00076 25.0 1.2 17 120-136 67-83 (143)
53 1su0_B NIFU like protein ISCU; 25.6 1.3E+02 0.0045 21.3 5.2 54 123-177 44-98 (159)
54 4gof_A Small glutamine-rich te 24.9 49 0.0017 19.2 2.2 34 149-183 9-43 (52)
55 3lvl_A NIFU-like protein; prot 23.5 58 0.002 22.3 2.8 49 124-172 43-92 (129)
56 1uhm_A Histone H1, histone HHO 23.2 98 0.0034 19.1 3.6 36 143-178 23-58 (78)
57 4asv_A Small glutamine-rich te 21.8 77 0.0026 20.7 2.9 34 149-183 26-60 (92)
58 2rli_A SCO2 protein homolog, m 21.7 1.5E+02 0.0051 20.0 4.8 14 123-136 131-144 (171)
59 2qq4_A Iron-sulfur cluster bio 21.2 1.1E+02 0.0039 21.1 4.0 55 123-178 43-98 (138)
60 2lxb_A Small glutamine-rich te 20.6 88 0.003 19.5 2.9 34 149-183 14-48 (74)
61 4h62_V Mediator of RNA polymer 20.3 94 0.0032 15.3 2.5 17 161-177 9-25 (31)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=5.4e-47 Score=297.12 Aligned_cols=176 Identities=31% Similarity=0.522 Sum_probs=169.1
Q ss_pred ccccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcC
Q psy2800 5 MLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKG 84 (184)
Q Consensus 5 ~~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 84 (184)
.|+|++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++++++++||+.+|++.|.++++.+++.|+++++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (213)
T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNN 80 (213)
T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcc--------
Q psy2800 85 QPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYL-------- 156 (184)
Q Consensus 85 ~~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~-------- 156 (184)
++++++.+++++++++|.+|++||++++||||||++|+|+||++||+|++.+++++|+|+|+++++++||+.
T Consensus 81 ~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 81 KAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 999999999999999998888899999999999987789999999999999999999999999999999999
Q ss_pred -cCCCCChhHHHHHHHHHHHHhccc
Q psy2800 157 -LSPYESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 157 -~~~~~s~~ea~~li~~~i~~l~~~ 180 (184)
|+++||++||.+++.+|+....++
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~ 185 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAER 185 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999887654
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.5e-46 Score=296.49 Aligned_cols=176 Identities=31% Similarity=0.527 Sum_probs=169.2
Q ss_pred ccccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcC
Q psy2800 5 MLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKG 84 (184)
Q Consensus 5 ~~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 84 (184)
.|+|++++|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|+.+|++.|.++++.+++.|+++++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (222)
T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN 80 (222)
T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 48999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred -CCCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcc-------
Q psy2800 85 -QPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYL------- 156 (184)
Q Consensus 85 -~~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~------- 156 (184)
++++++.+++++++++|.+|++||++++||||||++|+|+||++||+|++.+++++|+|+|+++++++||+.
T Consensus 81 ~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 81 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp TCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 999999999999999999888899999999999988889999999999999999999999999999999998
Q ss_pred ----------cCCCCChhHHHHHHHHHHHHhccc
Q psy2800 157 ----------LSPYESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 157 ----------~~~~~s~~ea~~li~~~i~~l~~~ 180 (184)
|+++|+++||.+++..|+....++
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~r 194 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATER 194 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999877654
No 3
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=6.2e-46 Score=292.09 Aligned_cols=173 Identities=23% Similarity=0.354 Sum_probs=159.1
Q ss_pred cccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCC
Q psy2800 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQ 85 (184)
Q Consensus 6 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 85 (184)
|+|++.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 86 PLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 86 ~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+++++.+++++++++|.+|.+||++++|||||| +| |+||++||+|++.+++++|+|+|+++++++||+.|+++||++|
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ee 158 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TA-PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDE 158 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SS-EEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CC-CEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHH
Confidence 999999999999999988888999999999999 54 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|.+++.+|++...++
T Consensus 159 a~~la~~al~~~~~r 173 (217)
T 1yar_H 159 GVDLVIRAISAAKQR 173 (217)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887543
No 4
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=4.3e-45 Score=284.77 Aligned_cols=175 Identities=26% Similarity=0.364 Sum_probs=165.0
Q ss_pred cccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCC
Q psy2800 6 LEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQ 85 (184)
Q Consensus 6 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 85 (184)
++|++.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 47899999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCceeEEEECCCCceee-eCeEEEecCHHHHHHHHhcccCCCCCh
Q psy2800 86 PLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDG-TGKGGVYSYDPVGHCEK-VAYRLHGTSAKFMLASMSYLLSPYESE 163 (184)
Q Consensus 86 ~~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~-~g~p~Ly~id~~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s~ 163 (184)
+++++.+++++++++|.+|..||++++||||||+ +++|+||++||+|++.+ .+|+|+|+|+++++++||+.|+++|++
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 9999999999999999888789999999999996 46799999999999855 577999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q psy2800 164 FDYTDVITMALEELTPV 180 (184)
Q Consensus 164 ~ea~~li~~~i~~l~~~ 180 (184)
+||.+++.+|+....++
T Consensus 161 eea~~l~~~al~~~~~~ 177 (205)
T 1iru_J 161 DHLFETISQAMLNAVDR 177 (205)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 5
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.4e-44 Score=280.31 Aligned_cols=173 Identities=26% Similarity=0.362 Sum_probs=163.8
Q ss_pred ccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCC
Q psy2800 7 EHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQP 86 (184)
Q Consensus 7 ~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 86 (184)
+|++.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+ |++++++|+.+|++.+.++++.+++.|+++++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 689999999999999999999999999999988888999999999 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCceeEEEECCCCceee-eCeEEEecCHHHHHHHHhcccCCCCChh
Q psy2800 87 LSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDG-TGKGGVYSYDPVGHCEK-VAYRLHGTSAKFMLASMSYLLSPYESEF 164 (184)
Q Consensus 87 ~~~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~-~g~p~Ly~id~~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s~~ 164 (184)
++++.+++++++++|.+|..||++++||||||+ +++|+||++||+|++.+ .+|+|+|+|+++++++||+.|+++|+++
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 160 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE 160 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence 999999999999999888779999999999996 46799999999999855 4779999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy2800 165 DYTDVITMALEELTPV 180 (184)
Q Consensus 165 ea~~li~~~i~~l~~~ 180 (184)
||.+++.+|+....++
T Consensus 161 ea~~l~~~al~~~~~~ 176 (204)
T 1ryp_J 161 DLFETISQALLNAADR 176 (204)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999877654
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.7e-44 Score=284.26 Aligned_cols=168 Identities=20% Similarity=0.300 Sum_probs=160.8
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeC-eEEEecCHHHHHHHHhcccCCCCChhHHHHHHH
Q psy2800 93 AEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVA-YRLHGTSAKFMLASMSYLLSPYESEFDYTDVIT 171 (184)
Q Consensus 93 a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~ 171 (184)
++++++++|.+|++||++++||||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|+++||.+++.
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999998888899999999999985679999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q psy2800 172 MALEELTPV 180 (184)
Q Consensus 172 ~~i~~l~~~ 180 (184)
.||.....+
T Consensus 161 ~al~~~~~r 169 (219)
T 3h4p_a 161 NALKSAMER 169 (219)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhh
Confidence 999887654
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=6.1e-44 Score=277.66 Aligned_cols=166 Identities=21% Similarity=0.301 Sum_probs=159.1
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeC-eEEEecCHHHHHHHHhcccCCCCChhHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVA-YRLHGTSAKFMLASMSYLLSPYESEFDYTDVITM 172 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~ 172 (184)
+++++++|.+|.+||++++||||||++ +|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|+++||.+++.+
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~ 159 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVR 159 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETT-EEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCC-CCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHH
Confidence 999999998888899999999999974 59999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhccc
Q psy2800 173 ALEELTPV 180 (184)
Q Consensus 173 ~i~~l~~~ 180 (184)
|+....++
T Consensus 160 al~~~~~~ 167 (202)
T 1j2q_H 160 AIYSAMKR 167 (202)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99887543
No 8
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2e-43 Score=273.93 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=159.0
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 68999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-cC-CCeeEEEEEEEEcC-CCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHH
Q psy2800 93 AEMLSLLLYER-RI-FPYYVQVLLVGIDG-TGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDV 169 (184)
Q Consensus 93 a~~i~~~~~~~-r~-~P~~~s~lv~G~d~-~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~l 169 (184)
++++++++|.. |. +||++++||||||+ +++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||.++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 160 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL 160 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999999864 33 49999999999997 46799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q psy2800 170 ITMALEELTPV 180 (184)
Q Consensus 170 i~~~i~~l~~~ 180 (184)
+.+|++...++
T Consensus 161 ~~~al~~~~~~ 171 (198)
T 1ryp_K 161 LKLCVQELEKR 171 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 9
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=9.7e-44 Score=282.29 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=162.6
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHH-----hcCC
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAE-----AKGQ 85 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~~ 85 (184)
.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|++ ++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (233)
T 1ryp_N 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEE 85 (233)
T ss_dssp EEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTT
T ss_pred cCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCC
Confidence 47999999999999999999999998889999999999999999999999999999999999999999999 8999
Q ss_pred CCChHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC----
Q psy2800 86 PLSLPGTAEMLSLLLYERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP---- 159 (184)
Q Consensus 86 ~~~~~~~a~~i~~~~~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~---- 159 (184)
+++++.+++++++++|.+| ++||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++
T Consensus 86 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~ 165 (233)
T 1ryp_N 86 ALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDI 165 (233)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGG
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcccccc
Confidence 9999999999999999876 6899999999999987679999999999999999999999999999999999999
Q ss_pred -CCChhHHHHHHHHHHHHhccc
Q psy2800 160 -YESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 160 -~~s~~ea~~li~~~i~~l~~~ 180 (184)
+||++||.+++.+||+...++
T Consensus 166 ~~ms~eea~~la~~al~~~~~r 187 (233)
T 1ryp_N 166 PKTTVQVAEEAIVNAMRVLYYR 187 (233)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 10
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.8e-43 Score=282.40 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=160.3
Q ss_pred ccc-CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy2800 10 VQH-GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLS 88 (184)
Q Consensus 10 ~~~-g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 88 (184)
+++ |+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++|+++|+.+|++.+.++++.+++.|+++++++++
T Consensus 26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~ 104 (243)
T 1ryp_A 26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMP 104 (243)
T ss_dssp TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 357 9999999999999999999998 66777889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC-----
Q psy2800 89 LPGTAEMLSLLL--YERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP----- 159 (184)
Q Consensus 89 ~~~~a~~i~~~~--~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~----- 159 (184)
++.+++++++++ |.+| ++||+|++||||||++++|+||++||+|++.+++++|+|+|++.++++||+.|++
T Consensus 105 v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~ 184 (243)
T 1ryp_A 105 CDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDH 184 (243)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhccccc
Confidence 999999999999 7777 7899999999999976679999999999999999999999999999999999999
Q ss_pred --CCChhHHHHHHHHHHHHhccc
Q psy2800 160 --YESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 160 --~~s~~ea~~li~~~i~~l~~~ 180 (184)
+|+++||.+++.+||....++
T Consensus 185 ~~~ms~eea~~l~~~al~~~~~r 207 (243)
T 1ryp_A 185 INEESWEKVVEFAITHMIDALGT 207 (243)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999876544
No 11
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.5e-43 Score=286.35 Aligned_cols=177 Identities=18% Similarity=0.224 Sum_probs=166.5
Q ss_pred ccccccccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHH-
Q psy2800 3 EAMLEHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAE- 81 (184)
Q Consensus 3 ~~~~~~~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 81 (184)
++.+.|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++|+++|+.+|++.|.+++|.+++.|++
T Consensus 32 ~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 32 VNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp --CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 56677777 7999999999999999999999998888999999999999999999999999999999999999999998
Q ss_pred ----hcCCCCChHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhc
Q psy2800 82 ----AKGQPLSLPGTAEMLSLLLYERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSY 155 (184)
Q Consensus 82 ----~~~~~~~~~~~a~~i~~~~~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~ 155 (184)
+++++++++.+++++++++|.+| ++||++++||||+|++++|+||++||+|++.+++++|+|+|+++++++||+
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 190 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK 190 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTT
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHH
Confidence 89999999999999999999876 689999999999998767999999999999999999999999999999999
Q ss_pred ccCC-----CCChhHHHHHHHHHHHHhccc
Q psy2800 156 LLSP-----YESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 156 ~~~~-----~~s~~ea~~li~~~i~~l~~~ 180 (184)
.|++ +||++||++++.+||+...++
T Consensus 191 ~~~~~~~~~~ms~eeA~~la~~al~~a~~r 220 (266)
T 1g0u_M 191 VVDRESDIPKTTVQVAEEAIVNAMRVLYYR 220 (266)
T ss_dssp TCSSGGGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999999887654
No 12
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=6.2e-43 Score=271.80 Aligned_cols=168 Identities=24% Similarity=0.336 Sum_probs=157.9
Q ss_pred CceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 13 GGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 13 g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhhc-CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHH
Q psy2800 93 AEMLSLLL-YERR-IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVI 170 (184)
Q Consensus 93 a~~i~~~~-~~~r-~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li 170 (184)
++++++.+ |..| .+||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++||.+++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~ 160 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELL 160 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 99998876 5433 369999999999997667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q psy2800 171 TMALEELTPV 180 (184)
Q Consensus 171 ~~~i~~l~~~ 180 (184)
.+|++...++
T Consensus 161 ~~al~~a~~r 170 (201)
T 1iru_K 161 RKCLEELQKR 170 (201)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 13
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.2e-43 Score=279.16 Aligned_cols=170 Identities=19% Similarity=0.194 Sum_probs=161.8
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHH-hcCCCCC
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAE-AKGQPLS 88 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 88 (184)
+.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.|.+++|.+++.|++ +++++++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS 84 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 347999999999999999999999998899999999999999999999999999999999999999999998 8999999
Q ss_pred hHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC--CCChh
Q psy2800 89 LPGTAEMLSLLLYERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP--YESEF 164 (184)
Q Consensus 89 ~~~~a~~i~~~~~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~~ 164 (184)
++.+++++++++|.+| ++||++++||||+|++ +|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++
T Consensus 85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~e 163 (219)
T 1iru_N 85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQT 163 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHH
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999999999877 7899999999999964 69999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhccc
Q psy2800 165 DYTDVITMALEELTPV 180 (184)
Q Consensus 165 ea~~li~~~i~~l~~~ 180 (184)
||.+++.+||....++
T Consensus 164 ea~~l~~~al~~~~~~ 179 (219)
T 1iru_N 164 EARDLVERCMRVLYYR 179 (219)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999877654
No 14
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=5e-43 Score=272.88 Aligned_cols=166 Identities=17% Similarity=0.140 Sum_probs=158.7
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.+|.+||++++||||||++ +|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||.+++.+|
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~a 159 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKR-GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRA 159 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSS-SEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCC-CCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 999999998887899999999999975 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
++...++
T Consensus 160 l~~~~~r 166 (204)
T 1iru_L 160 IYQATYR 166 (204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9876543
No 15
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=4.9e-43 Score=274.54 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=159.9
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.+|..||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||.+++.+|
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~a 160 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 99999999887779999999999996667999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
++...++
T Consensus 161 l~~~~~r 167 (212)
T 1ryp_L 161 ILAAAHR 167 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9877654
No 16
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=6.1e-43 Score=272.67 Aligned_cols=169 Identities=21% Similarity=0.299 Sum_probs=160.4
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++++++ +++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v 84 (205)
T 1ryp_H 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PST 84 (205)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCH
T ss_pred CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCH
Confidence 4589999999999999999999999998888999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHH
Q psy2800 90 PGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDV 169 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~l 169 (184)
+.+++++++++|.+|.+ |++++||||||++++|+||++||+|++.+++++|+|+|++.++++||+.|+++||++||.++
T Consensus 85 ~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 163 (205)
T 1ryp_H 85 ETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDF 163 (205)
T ss_dssp HHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999987765 99999999999766799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q psy2800 170 ITMALEELTPV 180 (184)
Q Consensus 170 i~~~i~~l~~~ 180 (184)
+.+|++...++
T Consensus 164 ~~~al~~a~~~ 174 (205)
T 1ryp_H 164 IKHSLSQAIKW 174 (205)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999876543
No 17
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=7.3e-43 Score=272.17 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=158.6
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.+|. ||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|+++|+++||.+++.+|
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~a 159 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999997765 9999999999998667999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy2800 174 LEELTPV 180 (184)
Q Consensus 174 i~~l~~~ 180 (184)
+....++
T Consensus 160 l~~~~~~ 166 (205)
T 1iru_H 160 LALAMER 166 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9877554
No 18
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.4e-42 Score=277.38 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=160.7
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36899999999999999999999999877668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLYE--R--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~~--~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.++++++++++. + +.+||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++|
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 187 (244)
T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDD 187 (244)
T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHH
Confidence 9999999999953 2 36799999999999955679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|.+++.+|+....++
T Consensus 188 a~~la~~al~~~~~r 202 (244)
T 1ryp_C 188 AIELALKTLSKTTDS 202 (244)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887765
No 19
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=9e-43 Score=284.07 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=160.9
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv 151 (287)
T 3nzj_K 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISV 151 (287)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred eccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHH
Q psy2800 90 PGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDV 169 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~l 169 (184)
+.+++++++++|.+|..||++++||||||++++|+||++||+|++.++++.|+|+|+++++++||+.|+++|+++||.++
T Consensus 152 ~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~l 231 (287)
T 3nzj_K 152 AAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 231 (287)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHH
Confidence 99999999999988878999999999999767799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q psy2800 170 ITMALEELTPV 180 (184)
Q Consensus 170 i~~~i~~l~~~ 180 (184)
+.+||.....+
T Consensus 232 a~~aL~~a~~r 242 (287)
T 3nzj_K 232 GKRSILAAAHR 242 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999876543
No 20
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=3.3e-42 Score=273.45 Aligned_cols=169 Identities=18% Similarity=0.206 Sum_probs=157.9
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 458999999999999999999999986 5678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLYERR----IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r----~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.+++++++++|..+ .|||++++||||||++ +|+||++||+|++.+++++|+|+|++.++++||+.|+++|+++|
T Consensus 110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 188 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKE 188 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSS-CEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHH
Confidence 999999999997432 4699999999999974 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|.+++.+|++...++
T Consensus 189 a~~la~~al~~~~~~ 203 (233)
T 1yar_A 189 AVTLGIKALKSSLEE 203 (233)
T ss_dssp HHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999877654
No 21
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.4e-42 Score=274.24 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=157.5
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 106 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT 106 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3579999999999999999999998 467778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLL--YERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~--~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.+++++++++ |.++ ++||++++||||||++ +|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++|
T Consensus 107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ee 185 (233)
T 1iru_B 107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELED 185 (233)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSS-SEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCC-CCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHH
Confidence 99999999999 4443 6799999999999954 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|.+++.+|++...++
T Consensus 186 a~~la~~al~~~~~~ 200 (233)
T 1iru_B 186 AIHTAILTLKESFEG 200 (233)
T ss_dssp HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998877654
No 22
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=4.5e-42 Score=274.72 Aligned_cols=168 Identities=18% Similarity=0.215 Sum_probs=157.9
Q ss_pred cCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHH
Q psy2800 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPG 91 (184)
Q Consensus 12 ~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 35 ~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
T 1iru_A 35 GGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM 113 (246)
T ss_dssp TCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 39999999999999999999998 56777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC--CCChhH
Q psy2800 92 TAEMLSLLL--YERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP--YESEFD 165 (184)
Q Consensus 92 ~a~~i~~~~--~~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~~e 165 (184)
+++++++++ |.+| .+||+|++||||||++++|+||++||+|++.+++++|+|+|++.++++||+.|++ +|+++|
T Consensus 114 la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~ee 193 (246)
T 1iru_A 114 LCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQ 193 (246)
T ss_dssp HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHH
Confidence 999999985 6555 7899999999999976679999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|.+++.+|++...++
T Consensus 194 a~~la~~al~~~~~r 208 (246)
T 1iru_A 194 TVETAITCLSTVLSI 208 (246)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877654
No 23
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=3.2e-42 Score=277.62 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=156.7
Q ss_pred ccccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy2800 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLS 88 (184)
Q Consensus 9 ~~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 88 (184)
.+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++
T Consensus 25 av~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~ 104 (261)
T 3nzj_H 25 ATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR 104 (261)
T ss_dssp -----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCC
Confidence 45689999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHH
Q psy2800 89 LPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTD 168 (184)
Q Consensus 89 ~~~~a~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~ 168 (184)
++.+++++++.+|.++ +||++++||||||++| |+||++||+|++.+++++|+|+|++.++++||+.|+++|+++||.+
T Consensus 105 v~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~ 182 (261)
T 3nzj_H 105 VVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIK 182 (261)
T ss_dssp HHHHHHHHHHHHHHTT-TCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CcccEEEEEEEEeCCC-CEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHH
Confidence 9999999999998643 5999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy2800 169 VITMALEELTP 179 (184)
Q Consensus 169 li~~~i~~l~~ 179 (184)
++.+||.....
T Consensus 183 la~~al~~a~~ 193 (261)
T 3nzj_H 183 LASDAIQAGIW 193 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 24
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=3e-42 Score=278.01 Aligned_cols=171 Identities=18% Similarity=0.159 Sum_probs=161.2
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++|++|++||+.+|++.|.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC 107 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36899999999999999999999999988877779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC-CCChh
Q psy2800 90 PGTAEMLSLLLYERR----IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP-YESEF 164 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r----~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~-~~s~~ 164 (184)
+.+++.++++++..+ .+||+|++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~e 187 (261)
T 1iru_C 108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLK 187 (261)
T ss_dssp HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHH
T ss_pred HHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHH
Confidence 999999999997542 6799999999999976679999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhccc
Q psy2800 165 DYTDVITMALEELTPV 180 (184)
Q Consensus 165 ea~~li~~~i~~l~~~ 180 (184)
||.+++..||....++
T Consensus 188 eA~~la~~al~~~~~~ 203 (261)
T 1iru_C 188 SALALAIKVLNKTMDV 203 (261)
T ss_dssp HHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 25
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.7e-42 Score=276.50 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=159.3
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++|++|++||+.+|++.+.++++.+++.|++++++++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 468999999999999999999999998776 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--c--------CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC
Q psy2800 90 PGTAEMLSLLLYER--R--------IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP 159 (184)
Q Consensus 90 ~~~a~~i~~~~~~~--r--------~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 159 (184)
+.+++.+++++|.. + .|||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 181 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHS 181 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhcc
Confidence 99999999998641 1 4599999999999966679999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhccc
Q psy2800 160 YESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 160 ~~s~~ea~~li~~~i~~l~~~ 180 (184)
+|+++||.+++.+|+....++
T Consensus 182 ~ms~eea~~la~~al~~~~~~ 202 (242)
T 1ryp_E 182 SLTLKEAELLVLKILKQVMEE 202 (242)
T ss_dssp TCCHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999887665
No 26
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=4.8e-42 Score=272.73 Aligned_cols=164 Identities=14% Similarity=0.174 Sum_probs=156.1
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++++|.++ +||++++||||+|++ +|+||++||+|++.+++++|+|+|++.++++||+.|+++|+++||.+++.+|
T Consensus 81 ~~l~~~l~~~~-~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (234)
T 3unf_H 81 RILRQTLFRYQ-GHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEA 158 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHH
Confidence 99999998643 599999999999975 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q psy2800 174 LEELTP 179 (184)
Q Consensus 174 i~~l~~ 179 (184)
|+....
T Consensus 159 l~~~~~ 164 (234)
T 3unf_H 159 ITAGIL 164 (234)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987643
No 27
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=5.9e-42 Score=273.27 Aligned_cols=170 Identities=15% Similarity=0.225 Sum_probs=159.2
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++|++++++|+.+|++.+.++++.+++.|++++++++++
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV 104 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999987776699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCC-CceeEEEECCCCceeeeCeEEEecCHHHHHHHHhccc---CCCC
Q psy2800 90 PGTAEMLSLLLYER--R--IFPYYVQVLLVGIDGT-GKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLL---SPYE 161 (184)
Q Consensus 90 ~~~a~~i~~~~~~~--r--~~P~~~s~lv~G~d~~-g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~---~~~~ 161 (184)
+.+++++++++|.. + .|||++++||||||++ ++|+||++||+|++.+++++|+|+|++.++++||+.| +++|
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~m 184 (241)
T 1ryp_D 105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPA 184 (241)
T ss_dssp HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCC
T ss_pred HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCC
Confidence 99999999999753 2 4699999999999974 6799999999999999999999999999999999999 9999
Q ss_pred ChhHHHHHHHHHHHHhcc
Q psy2800 162 SEFDYTDVITMALEELTP 179 (184)
Q Consensus 162 s~~ea~~li~~~i~~l~~ 179 (184)
+++||.+++.+|+....+
T Consensus 185 s~eea~~l~~~al~~~~~ 202 (241)
T 1ryp_D 185 TVEECVKLTVRSLLEVVQ 202 (241)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999977643
No 28
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=7.2e-42 Score=273.90 Aligned_cols=169 Identities=20% Similarity=0.265 Sum_probs=156.9
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++++++|+.+|++.+.++++.+++.|++++++++++
T Consensus 26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (248)
T 1iru_D 26 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTV 104 (248)
T ss_dssp HHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 357999999999999999999999987 4667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCC--Ch
Q psy2800 90 PGTAEMLSLLLYE--RR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYE--SE 163 (184)
Q Consensus 90 ~~~a~~i~~~~~~--~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~--s~ 163 (184)
+.++++++++++. ++ .|||+|++||||||++++|+||++||+|++.+++++|+|+|++.++++||+.|+++| ++
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~ 184 (248)
T 1iru_D 105 EYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETD 184 (248)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSH
T ss_pred HHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCH
Confidence 9999999999953 22 469999999999996567999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHhcc
Q psy2800 164 FDYTDVITMALEELTP 179 (184)
Q Consensus 164 ~ea~~li~~~i~~l~~ 179 (184)
+||.+++.+||....+
T Consensus 185 eea~~la~~al~~~~~ 200 (248)
T 1iru_D 185 DLTIKLVIKALLEVVQ 200 (248)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999988876543
No 29
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=9.2e-42 Score=269.19 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=155.7
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+++++.+|.++ +||++++||||+|++ +|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++||.+++.+|
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDA 158 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeCC-CCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Confidence 99999998654 699999999999975 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q psy2800 174 LEELT 178 (184)
Q Consensus 174 i~~l~ 178 (184)
++...
T Consensus 159 l~~~~ 163 (222)
T 1ryp_I 159 IQAGI 163 (222)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 30
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=5e-42 Score=273.67 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=158.6
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++++++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467999999999999999999999998776 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhhc-------CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCC
Q psy2800 90 PGTAEMLSLLL--YERR-------IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPY 160 (184)
Q Consensus 90 ~~~a~~i~~~~--~~~r-------~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~ 160 (184)
+.+++++++++ |.++ .|||++++|||||| +++|+||++||+|++.+++++|+|+|++.++++||+.|+++
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 188 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKS 188 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccC
Confidence 99999999999 4333 46999999999999 55699999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhccc
Q psy2800 161 ESEFDYTDVITMALEELTPV 180 (184)
Q Consensus 161 ~s~~ea~~li~~~i~~l~~~ 180 (184)
|+++||.+++.+|+....++
T Consensus 189 ms~eea~~la~~al~~~~~~ 208 (241)
T 1iru_E 189 MTLKEAIKSSLIILKQVMEE 208 (241)
T ss_dssp CCHHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887654
No 31
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=6.2e-42 Score=275.18 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=157.6
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++. ++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++++++++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 108 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL 108 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4579999999999999999999999988764 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLYERR----IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r----~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.++++++++++..+ ++||+|++||||||++++|+||++||+|++.+++++|+|+|++.++++||+.|+++|+++|
T Consensus 109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 188 (254)
T 1iru_G 109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRD 188 (254)
T ss_dssp HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHH
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHH
Confidence 999999999996443 5799999999999955679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy2800 166 YTDVITMALEELTP 179 (184)
Q Consensus 166 a~~li~~~i~~l~~ 179 (184)
|.+++..||+...+
T Consensus 189 a~~la~~al~~~~~ 202 (254)
T 1iru_G 189 IVKEVAKIIYIVHD 202 (254)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHh
Confidence 99988888876643
No 32
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-41 Score=270.31 Aligned_cols=166 Identities=25% Similarity=0.342 Sum_probs=157.1
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCCeeEEEEEEEEcCCCc-----eeEEEECCCCceeee--CeEEEecCHHHHHHHHhcccCCCCCh
Q psy2800 94 EMLSLLLYERR---IFPYYVQVLLVGIDGTGK-----GGVYSYDPVGHCEKV--AYRLHGTSAKFMLASMSYLLSPYESE 163 (184)
Q Consensus 94 ~~i~~~~~~~r---~~P~~~s~lv~G~d~~g~-----p~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~s~ 163 (184)
+.+++++|.++ .+||++++||||||++++ |+||++||+|++.++ +++|+|+|+++++++||+.|+++|++
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 99999997533 679999999999998756 999999999999999 99999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcc
Q psy2800 164 FDYTDVITMALEELTP 179 (184)
Q Consensus 164 ~ea~~li~~~i~~l~~ 179 (184)
+||.+++.+|+....+
T Consensus 161 eeA~~la~~al~~a~~ 176 (235)
T 1q5q_H 161 ETALRAAIESLYDAAD 176 (235)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999986554
No 33
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.5e-41 Score=269.62 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=156.8
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+. +.+++.+||++|+++++++++|+.+|++.+.++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV 109 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3579999999999999999999999875 457899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhH
Q psy2800 90 PGTAEMLSLLLY--ERR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFD 165 (184)
Q Consensus 90 ~~~a~~i~~~~~--~~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 165 (184)
+.++++++++++ .++ .|||++++|||||| + +|+||++||+|++.+++++|+|+|++.++++||+.|+++|+++|
T Consensus 110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 187 (246)
T 1j2p_A 110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-E-VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDD 187 (246)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-S-SEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-C-CCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHH
Confidence 999999999994 333 56999999999999 4 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy2800 166 YTDVITMALEELTPV 180 (184)
Q Consensus 166 a~~li~~~i~~l~~~ 180 (184)
|.+++.+|+....++
T Consensus 188 a~~la~~al~~~~~~ 202 (246)
T 1j2p_A 188 AMVLGLVAMGLSIES 202 (246)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999887654
No 34
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.1e-41 Score=276.13 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=158.8
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|+|.+.+.++. .+.+|||+|++|++|+++|+.+|++.|+++++.+++.|+++++++++++
T Consensus 32 ~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~ 110 (288)
T 3nzj_F 32 ENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP 110 (288)
T ss_dssp HTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHH
Confidence 589999999999999999999999987765 4779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcc---cCCCCCh
Q psy2800 91 GTAEMLSLLLYER----RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYL---LSPYESE 163 (184)
Q Consensus 91 ~~a~~i~~~~~~~----r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~---~~~~~s~ 163 (184)
.++++++++++.. +++||+|++||||||++| |+||++||+|++.+++++|+|+|++.++++||+. |+++|++
T Consensus 111 ~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~ 189 (288)
T 3nzj_F 111 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSA 189 (288)
T ss_dssp HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCH
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCC-CEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCH
Confidence 9999999999632 367999999999999855 9999999999999999999999999999999999 9999999
Q ss_pred hHHHHHHHHHHHHhcccc
Q psy2800 164 FDYTDVITMALEELTPVV 181 (184)
Q Consensus 164 ~ea~~li~~~i~~l~~~~ 181 (184)
+||.+++.+||....++.
T Consensus 190 eEAv~la~~al~~a~~~~ 207 (288)
T 3nzj_F 190 REAVKQAAKIIYLAHEDN 207 (288)
T ss_dssp HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999998887664
No 35
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.1e-42 Score=276.55 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=157.5
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLP 90 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|++|++|+++|+.+|++.|+++++.+++.|++.++++++++
T Consensus 36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~ 114 (264)
T 3h4p_A 36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIE 114 (264)
T ss_dssp HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Confidence 57999999999999999999999986 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHH
Q psy2800 91 GTAEMLSLLLYE--RR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDY 166 (184)
Q Consensus 91 ~~a~~i~~~~~~--~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 166 (184)
.+++.++++++. ++ ++||+|++||||||++ +|+||++||+|++.+++++|+|+|++.++++||+.|+++|+++||
T Consensus 115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~-gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea 193 (264)
T 3h4p_A 115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKN-EARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEG 193 (264)
T ss_dssp HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETT-EEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCC-cCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHH
Confidence 999999999853 22 5799999999999964 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy2800 167 TDVITMALEELTPV 180 (184)
Q Consensus 167 ~~li~~~i~~l~~~ 180 (184)
.+++.+||....++
T Consensus 194 ~~la~~al~~a~~~ 207 (264)
T 3h4p_A 194 LELAITALTKANED 207 (264)
T ss_dssp HHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 36
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.3e-41 Score=270.44 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=156.9
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++.+ +.+||++|++|+++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 105 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 105 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 35899999999999999999999999887655 45999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcc---cCCCCC
Q psy2800 90 PGTAEMLSLLLYE--RR--IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYL---LSPYES 162 (184)
Q Consensus 90 ~~~a~~i~~~~~~--~r--~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~---~~~~~s 162 (184)
+.++++++++++. ++ ++||++++||||||++ +|+||++||+|++.+++++|+|+|++.++++||+. |+++||
T Consensus 106 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms 184 (244)
T 1ryp_G 106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLS 184 (244)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCC-cCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCC
Confidence 9999999999943 22 5799999999999964 59999999999999999999999999999999997 999999
Q ss_pred hhHHHHHHHHHHHHhccc
Q psy2800 163 EFDYTDVITMALEELTPV 180 (184)
Q Consensus 163 ~~ea~~li~~~i~~l~~~ 180 (184)
++||.+++.+||....++
T Consensus 185 ~eea~~la~~al~~~~~~ 202 (244)
T 1ryp_G 185 AREAVKQAAKIIYLAHED 202 (244)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999887765
No 37
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.3e-41 Score=276.63 Aligned_cols=170 Identities=25% Similarity=0.351 Sum_probs=160.4
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++|+++|+.+|++.|.++++.+++.|++++++++++
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv 141 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTF 141 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCH
Confidence 46899999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCc-----eeEEEECCCCceeee--CeEEEecCHHHHHHHHhcccCC
Q psy2800 90 PGTAEMLSLLLYERR---IFPYYVQVLLVGIDGTGK-----GGVYSYDPVGHCEKV--AYRLHGTSAKFMLASMSYLLSP 159 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r---~~P~~~s~lv~G~d~~g~-----p~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~ 159 (184)
+.+++.+++++|.++ .+||+|++||||||++++ |+||++||+|++.++ +++|+|+|+++++++||+.|++
T Consensus 142 ~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~ 221 (294)
T 1q5r_H 142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP 221 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccC
Confidence 999999999997543 479999999999998755 999999999999998 9999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhcc
Q psy2800 160 YESEFDYTDVITMALEELTP 179 (184)
Q Consensus 160 ~~s~~ea~~li~~~i~~l~~ 179 (184)
+|+++||++++.+||.....
T Consensus 222 ~ms~eEAi~la~~aL~~a~~ 241 (294)
T 1q5r_H 222 DSDEETALRAAIESLYDAAD 241 (294)
T ss_dssp SCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999986544
No 38
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=2.2e-41 Score=271.34 Aligned_cols=170 Identities=17% Similarity=0.128 Sum_probs=157.4
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHH-HHHhcCCCCC
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINR-SAEAKGQPLS 88 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~ 88 (184)
+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|++||..+|++.+.++++.+++. |+..++.+++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP 106 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3589999999999999999999998 6677889999999999999999999999999999999999999 9999999999
Q ss_pred hHHHHHHHHHHHH----hhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChh
Q psy2800 89 LPGTAEMLSLLLY----ERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEF 164 (184)
Q Consensus 89 ~~~~a~~i~~~~~----~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ 164 (184)
++.+++.+++++. .++++||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++|+++
T Consensus 107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 186 (250)
T 1ryp_B 107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELE 186 (250)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHH
Confidence 9999888888873 234679999999999997667999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy2800 165 DYTDVITMALEELTPV 180 (184)
Q Consensus 165 ea~~li~~~i~~l~~~ 180 (184)
||.+++.+|++...++
T Consensus 187 ea~~la~~al~~~~~~ 202 (250)
T 1ryp_B 187 DAIHIALLTLKESVEG 202 (250)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999877543
No 39
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=4.4e-41 Score=267.28 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=155.3
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMA 173 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~ 173 (184)
+.+++.+|.+| +||++++||||||++| |+||++||+|++.+++++|+|+|++.++++||+.|+++|+++||.+++.+|
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEA 158 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECSSC-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHH
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcCCC-CEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 99999998654 5999999999999755 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q psy2800 174 LEELT 178 (184)
Q Consensus 174 i~~l~ 178 (184)
++...
T Consensus 159 l~~a~ 163 (234)
T 1iru_I 159 IAAGI 163 (234)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 40
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=9.4e-41 Score=267.22 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=147.6
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKG-QPLSL 89 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 89 (184)
++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ +++++
T Consensus 25 ~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v 96 (248)
T 3mi0_A 25 ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTG 96 (248)
T ss_dssp HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 5899999999999999999999 24789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHH---HhhcCCCeeEEEEEEEEcC---CCceeEEEECCCCcee-eeCeEEEecCHHHHHHHHhcccCCCCC
Q psy2800 90 PGTAEMLSLLL---YERRIFPYYVQVLLVGIDG---TGKGGVYSYDPVGHCE-KVAYRLHGTSAKFMLASMSYLLSPYES 162 (184)
Q Consensus 90 ~~~a~~i~~~~---~~~r~~P~~~s~lv~G~d~---~g~p~Ly~id~~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~~s 162 (184)
+.+++.+++.+ |.++++||+|++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++|+
T Consensus 97 ~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt 176 (248)
T 3mi0_A 97 RQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENAS 176 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCC
Confidence 99999999554 5556789999999999997 3669999999999999 599999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhc
Q psy2800 163 EFDYTDVITMALEELT 178 (184)
Q Consensus 163 ~~ea~~li~~~i~~l~ 178 (184)
++||++++.+||....
T Consensus 177 ~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 177 LTDALRIAVAALRAGS 192 (248)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988888887664
No 41
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=4.8e-41 Score=274.44 Aligned_cols=170 Identities=25% Similarity=0.354 Sum_probs=148.3
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++|+++|..+|++.|.++++.+++.|++.+++++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 56899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCc-----eeEEEECCCCcee--eeCeEEEecCHHHHHHHHhcccCC
Q psy2800 90 PGTAEMLSLLLYERR---IFPYYVQVLLVGIDGTGK-----GGVYSYDPVGHCE--KVAYRLHGTSAKFMLASMSYLLSP 159 (184)
Q Consensus 90 ~~~a~~i~~~~~~~r---~~P~~~s~lv~G~d~~g~-----p~Ly~id~~G~~~--~~~~~aiG~g~~~~~~~Le~~~~~ 159 (184)
+.+++.+++++|.++ .+||+|++||||||++++ |+||++||+|++. +++|+|+|+|+++++++||+.|++
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~ 213 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ 213 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCC
Confidence 999999999997543 359999999999998765 9999999999988 899999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhcc
Q psy2800 160 YESEFDYTDVITMALEELTP 179 (184)
Q Consensus 160 ~~s~~ea~~li~~~i~~l~~ 179 (184)
+|+++||.+++.+||.....
T Consensus 214 ~ms~eEAi~la~~aL~~a~~ 233 (291)
T 2jay_A 214 VTDGDSGLRVAVEALYDAAD 233 (291)
T ss_dssp CCSHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999886543
No 42
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.2e-40 Score=264.54 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=147.7
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.. ++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (233)
T 1ryp_F 28 IKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAV 104 (233)
T ss_dssp HHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999998743 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hh--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC--CC--
Q psy2800 90 PGTAEMLSLLLY--ER--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP--YE-- 161 (184)
Q Consensus 90 ~~~a~~i~~~~~--~~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~-- 161 (184)
+.+++.++++++ .+ +.|||+|++||||||++ +|+||++||+|++.+++++|+|+|++.++++||+.|++ +|
T Consensus 105 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~ 183 (233)
T 1ryp_F 105 ERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDG 183 (233)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC-cCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCC
Confidence 999999999994 32 25699999999999975 59999999999999999999999999999999999999 99
Q ss_pred ChhHHHHHHHHHHH
Q psy2800 162 SEFDYTDVITMALE 175 (184)
Q Consensus 162 s~~ea~~li~~~i~ 175 (184)
+++||.+++..|+.
T Consensus 184 s~eea~~~a~~al~ 197 (233)
T 1ryp_F 184 NPDELIKAGVEAIS 197 (233)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99887765555544
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.8e-40 Score=257.45 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=152.9
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTA 93 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 93 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceeEEEECCCCceee-eCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHH
Q psy2800 94 EMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEK-VAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITM 172 (184)
Q Consensus 94 ~~i~~~~~~~r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~ 172 (184)
+++++++|.+| +||++++||||+|++++|+||+ |+|.+.+ .+++++|+|+++++++||+.|+++||++||.+++.+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~ 157 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTN 157 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 99999998765 4999999999999867799999 9998654 556667999999999999999999999999999999
Q ss_pred HHHHhccc
Q psy2800 173 ALEELTPV 180 (184)
Q Consensus 173 ~i~~l~~~ 180 (184)
|+....++
T Consensus 158 al~~~~~~ 165 (199)
T 3unf_N 158 AITLAMNR 165 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99876543
No 44
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.7e-40 Score=268.05 Aligned_cols=167 Identities=18% Similarity=0.189 Sum_probs=154.2
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCCh
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSL 89 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (184)
+++|+|+|||+++||||||+|+|.+.+.. ++.+||++|++|++|++||+.+|++.|.++++.+++.|++++++++++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 35799999999999999999999998742 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceeEEEECCCCceeeeCeEEEecCHHHHHHHHhcccCC--CCCh
Q psy2800 90 PGTAEMLSLLLYE--R--RIFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSP--YESE 163 (184)
Q Consensus 90 ~~~a~~i~~~~~~--~--r~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~ 163 (184)
+.+++++++++|. + ..|||+|++||||||++ +|+||++||+|++.+++++|+|+|++.++++||+.|++ +|++
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~ 184 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM-GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNL 184 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcCC-CCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCH
Confidence 9999999999963 2 25699999999999974 59999999999999999999999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHhccc
Q psy2800 164 FDYTDVITMALEELTPV 180 (184)
Q Consensus 164 ~ea~~li~~~i~~l~~~ 180 (184)
+||.+++.+||....++
T Consensus 185 eea~~la~~al~~~~~r 201 (263)
T 1iru_F 185 NELVKHGLRALRETLPA 201 (263)
T ss_dssp HHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999888876543
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2e-39 Score=261.23 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=147.7
Q ss_pred cccCceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEcCCceEEEEecChhHHHHHHHHHHHHHHHHHHhcC-CCCC
Q psy2800 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQAEINRSAEAKG-QPLS 88 (184)
Q Consensus 10 ~~~g~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~ 88 (184)
+++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|.+.++ ++++
T Consensus 24 v~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~ 95 (259)
T 1q5q_A 24 IARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVT 95 (259)
T ss_dssp HHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred HhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 35899999999999999999998 25789999999999999999999999999999999999998887 5999
Q ss_pred hHHHHHHHHHHH---HhhcCCCeeEEEEEEEEc--C-CCceeEEEECCCCcee-eeCeEEEecCHHHHHHHHhcccCCCC
Q psy2800 89 LPGTAEMLSLLL---YERRIFPYYVQVLLVGID--G-TGKGGVYSYDPVGHCE-KVAYRLHGTSAKFMLASMSYLLSPYE 161 (184)
Q Consensus 89 ~~~~a~~i~~~~---~~~r~~P~~~s~lv~G~d--~-~g~p~Ly~id~~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~~ 161 (184)
++.+++++++++ |..+.+||+|++|||||| + +++|+||++||+|++. +++++|+|+|++.++++||+.|+++|
T Consensus 96 v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~m 175 (259)
T 1q5q_A 96 GRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADL 175 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCC
Confidence 999999999963 666778999999999999 3 4569999999999998 88999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhc
Q psy2800 162 SEFDYTDVITMALEELT 178 (184)
Q Consensus 162 s~~ea~~li~~~i~~l~ 178 (184)
+++||.+++.+||....
T Consensus 176 s~eea~~la~~al~~~~ 192 (259)
T 1q5q_A 176 DLEAAVGIAVNALRQGG 192 (259)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999988888886654
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3.1e-35 Score=225.01 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=134.3
Q ss_pred ccCceEEEEEcCCEEEEEEecCcccCce-eeeCCcCcEEEc-CCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy2800 11 QHGGTVMAIAGPDFALIASDTRSSSNGT-IVSNNQLKIFRL-PNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLS 88 (184)
Q Consensus 11 ~~g~t~igi~~~dgVvla~d~~~~~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 88 (184)
.+|+|+|||+++||||||+|+|.+.+.+ +.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5799999999999999999999999877 899999999999 999999999999999999999999999987 3 22
Q ss_pred hHHHHHHHHHHHHhhc-CCCeeEEEEEEEEcCCCceeEEEECCCCceee--eCeEEEecCHHHHHHHHhcccCC---CCC
Q psy2800 89 LPGTAEMLSLLLYERR-IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEK--VAYRLHGTSAKFMLASMSYLLSP---YES 162 (184)
Q Consensus 89 ~~~~a~~i~~~~~~~r-~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~--~~~~aiG~g~~~~~~~Le~~~~~---~~s 162 (184)
+. .+..+++.++..+ .|||++++||| | + |+||++||+|++.+ +++.|+|+|+++++++||+.|++ +|+
T Consensus 78 ~~-~~~~l~~~~~~~~~~rp~~~~~lva--d--~-p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt 151 (180)
T 2z3b_A 78 KR-AAVELAKEWRSDKVLRKLEAMLIVM--N--Q-DTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMS 151 (180)
T ss_dssp HH-HHHHHHHHHHHCTTGGGCCCCEEEE--C--S-SCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCC
T ss_pred HH-HHHHHHHHHHhhhCcCcceEEEEEE--c--C-CeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCC
Confidence 33 3334566665443 45999999998 4 3 99999999999887 59999999999999999999998 999
Q ss_pred hhHHHHHHHHHHHHhccc
Q psy2800 163 EFDYTDVITMALEELTPV 180 (184)
Q Consensus 163 ~~ea~~li~~~i~~l~~~ 180 (184)
.+| ++++|++...++
T Consensus 152 ~ee---l~~~al~~a~~r 166 (180)
T 2z3b_A 152 ASE---IARAALETAGEI 166 (180)
T ss_dssp HHH---HHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHh
Confidence 977 567777765543
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=7.1e-35 Score=221.14 Aligned_cols=153 Identities=16% Similarity=0.256 Sum_probs=135.4
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEc-CCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRL-PNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+| ++|++++++|+.+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999888999999999999 99999999999999999999999999998754 25666
Q ss_pred HHHHHHHHHhhc-CCCeeEEEEEEEEcCCCceeEEEECCCCceeeeC--eEEEecCHHHHHHHHhcccC-CCCChhHHHH
Q psy2800 93 AEMLSLLLYERR-IFPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVA--YRLHGTSAKFMLASMSYLLS-PYESEFDYTD 168 (184)
Q Consensus 93 a~~i~~~~~~~r-~~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~--~~aiG~g~~~~~~~Le~~~~-~~~s~~ea~~ 168 (184)
++.. +.++.+| .+||++++|+| | +|+||++||+|++.+++ +.|+|+|+++++++||+.|+ ++|+. ++
T Consensus 76 ~~l~-~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~ 146 (171)
T 1m4y_A 76 VELA-KDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---RE 146 (171)
T ss_dssp HHHH-HHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HH
T ss_pred HHHH-HHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HH
Confidence 6654 4666655 34799999998 5 49999999999999987 99999999999999999999 99987 67
Q ss_pred HHHHHHHHhccc
Q psy2800 169 VITMALEELTPV 180 (184)
Q Consensus 169 li~~~i~~l~~~ 180 (184)
++++|++...++
T Consensus 147 l~~~al~~a~~r 158 (171)
T 1m4y_A 147 IVEKAMTIAGEI 158 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 889998877654
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=7.2e-35 Score=221.72 Aligned_cols=153 Identities=16% Similarity=0.224 Sum_probs=136.1
Q ss_pred ceEEEEEcCCEEEEEEecCcccCceeeeCCcCcEEEc-CCceEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q psy2800 14 GTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRL-PNQTAVGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGT 92 (184)
Q Consensus 14 ~t~igi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+| ++|++++++|+.+|++.|.+++|.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999888899999999999 9999999999999999999999999999875 45566
Q ss_pred HHHHHHHHHhhcC-CCeeEEEEEEEEcCCCceeEEEECCCCceeeeC---eEEEecCHHHHHHHHhcccC-CCCChhHHH
Q psy2800 93 AEMLSLLLYERRI-FPYYVQVLLVGIDGTGKGGVYSYDPVGHCEKVA---YRLHGTSAKFMLASMSYLLS-PYESEFDYT 167 (184)
Q Consensus 93 a~~i~~~~~~~r~-~P~~~s~lv~G~d~~g~p~Ly~id~~G~~~~~~---~~aiG~g~~~~~~~Le~~~~-~~~s~~ea~ 167 (184)
+..+++.++.+|. +|+ +.+++|+| +|+||++||+|++.+++ +.|+|+|+++++++||+.|+ ++|+. +
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~---~ 146 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSA---H 146 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCH---H
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCH---H
Confidence 7778888877663 465 56777887 49999999999999988 99999999999999999999 99985 4
Q ss_pred HHHHHHHHHhccc
Q psy2800 168 DVITMALEELTPV 180 (184)
Q Consensus 168 ~li~~~i~~l~~~ 180 (184)
+++++|++...++
T Consensus 147 ~l~~~al~~a~~r 159 (174)
T 1g3k_A 147 EIVEKSLRIAGDI 159 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7899999887654
No 49
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=40.03 E-value=58 Score=22.74 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy2800 61 NMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLL 100 (184)
Q Consensus 61 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~ 100 (184)
+..|=-.+++++| .|..+++..++++.+++.+...+
T Consensus 62 LTe~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 5566778888887 45556688899999999886655
No 50
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=32.63 E-value=60 Score=22.06 Aligned_cols=36 Identities=6% Similarity=-0.048 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy2800 61 NMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLL 100 (184)
Q Consensus 61 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~ 100 (184)
+..+--.+++++| .|...++..++++.+++.+...+
T Consensus 46 LTe~HW~VI~flR----~~Y~e~~~~P~iR~l~K~~~~~~ 81 (115)
T 1sau_A 46 LTEEHWKIIRYLR----DYFIKYGVAPPVRMLVKHCKKEV 81 (115)
T ss_dssp CCHHHHHHHHHHH----HHHHHHSSCCCHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHHHHh
Confidence 5566678888887 45556688899999999884443
No 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=27.85 E-value=86 Score=21.85 Aligned_cols=23 Identities=0% Similarity=-0.057 Sum_probs=18.5
Q ss_pred hhcCCCeeEEEEEEEEcCCCceeEE
Q psy2800 102 ERRIFPYYVQVLLVGIDGTGKGGVY 126 (184)
Q Consensus 102 ~~r~~P~~~s~lv~G~d~~g~p~Ly 126 (184)
.+|+.-|+-+-|++|-| |=|+|.
T Consensus 50 K~RFdkYgkSGLLCG~D--GLPHLI 72 (154)
T 1qzv_F 50 XXXXXXXXXXXXXXXXX--XXXXXX 72 (154)
T ss_pred hcccccccccccccccc--cccccc
Confidence 35788899999999986 568874
No 52
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=27.22 E-value=22 Score=25.00 Aligned_cols=17 Identities=29% Similarity=0.732 Sum_probs=14.9
Q ss_pred CCceeEEEECCCCceee
Q psy2800 120 TGKGGVYSYDPVGHCEK 136 (184)
Q Consensus 120 ~g~p~Ly~id~~G~~~~ 136 (184)
+|.+++|.+.|.|.++.
T Consensus 67 eg~~RIYiVEPtG~fEd 83 (143)
T 2hw2_A 67 EGRGRIFIVEPEGAIED 83 (143)
T ss_dssp SSCCEEEEEEESSCCEE
T ss_pred CCCCeEEEEccCCCccc
Confidence 57789999999999975
No 53
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=25.61 E-value=1.3e+02 Score=21.34 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=39.3
Q ss_pred eeEE-EECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHh
Q psy2800 123 GGVY-SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177 (184)
Q Consensus 123 p~Ly-~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l 177 (184)
-.|| .+| .|.+.+..|...|++...|-+.+=..+=...|++||.++...-.+.|
T Consensus 44 i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml 98 (159)
T 1su0_B 44 ISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMV 98 (159)
T ss_dssp EEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3455 355 58899999999999888777655555557889999998887644433
No 54
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=24.89 E-value=49 Score=19.16 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=22.2
Q ss_pred HHHHHhcccC-CCCChhHHHHHHHHHHHHhcccccC
Q psy2800 149 MLASMSYLLS-PYESEFDYTDVITMALEELTPVVKV 183 (184)
Q Consensus 149 ~~~~Le~~~~-~~~s~~ea~~li~~~i~~l~~~~~~ 183 (184)
+..+|++... ..++.++ .|-+..|++.|.++++|
T Consensus 9 Ii~FL~~~~~~~~~s~D~-~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDA-QESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHSCCCHHH-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHhH-HHHHHHHHHHHHHHcCC
Confidence 4455655543 3566654 56678888888888776
No 55
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=23.49 E-value=58 Score=22.34 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=35.7
Q ss_pred eEE-EECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHH
Q psy2800 124 GVY-SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITM 172 (184)
Q Consensus 124 ~Ly-~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~ 172 (184)
.|| .+|+.|.+.+..|...|.+...+-+.+=..+=...|++||.++...
T Consensus 43 ~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~ 92 (129)
T 3lvl_A 43 KLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNT 92 (129)
T ss_dssp EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHH
T ss_pred EEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 454 5676688999999999998877665544444567888888877654
No 56
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=23.17 E-value=98 Score=19.08 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=25.3
Q ss_pred ecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHhc
Q psy2800 143 GTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178 (184)
Q Consensus 143 G~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~ 178 (184)
|+..+.+..+++..|..+.+......+++.+|+.+-
T Consensus 23 GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v 58 (78)
T 1uhm_A 23 GSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGV 58 (78)
T ss_dssp CEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHH
Confidence 677788999999998765542344567777777653
No 57
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=21.75 E-value=77 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=22.7
Q ss_pred HHHHHhcccC-CCCChhHHHHHHHHHHHHhcccccC
Q psy2800 149 MLASMSYLLS-PYESEFDYTDVITMALEELTPVVKV 183 (184)
Q Consensus 149 ~~~~Le~~~~-~~~s~~ea~~li~~~i~~l~~~~~~ 183 (184)
+..+|+.... ..++.++ .|-+..|++.|.++++|
T Consensus 26 IIdFL~~sv~~~~ls~D~-~ESLEVAIqCI~~AF~V 60 (92)
T 4asv_A 26 IVNYFSSIVEKKEISEDG-ADSLNVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHHH-HHHHHHHHHHHHHHhCC
Confidence 4455655543 3566654 56678888888888876
No 58
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=21.66 E-value=1.5e+02 Score=19.99 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.8
Q ss_pred eeEEEECCCCceee
Q psy2800 123 GGVYSYDPVGHCEK 136 (184)
Q Consensus 123 p~Ly~id~~G~~~~ 136 (184)
|..|.+|+.|.+..
T Consensus 131 ~~~~lid~~G~i~~ 144 (171)
T 2rli_A 131 IAIYLLNPDGLFTD 144 (171)
T ss_dssp CEEEEECTTSCEEE
T ss_pred ceEEEECCCCeEEE
Confidence 48999999998765
No 59
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=21.15 E-value=1.1e+02 Score=21.09 Aligned_cols=55 Identities=7% Similarity=-0.046 Sum_probs=39.5
Q ss_pred eeEEE-ECCCCceeeeCeEEEecCHHHHHHHHhcccCCCCChhHHHHHHHHHHHHhc
Q psy2800 123 GGVYS-YDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178 (184)
Q Consensus 123 p~Ly~-id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~li~~~i~~l~ 178 (184)
-.||. +| .|.+.+..|...|.+...|-+.+=..+=...|.+||.++...-...++
T Consensus 43 i~l~l~v~-~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~~~ml~ 98 (138)
T 2qq4_A 43 VEVMVLLE-GDTIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVV 98 (138)
T ss_dssp EEEEEEEE-TTEEEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 34543 44 688999999999998887765555555578899999988876554443
No 60
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=20.57 E-value=88 Score=19.50 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=22.6
Q ss_pred HHHHHhcccC-CCCChhHHHHHHHHHHHHhcccccC
Q psy2800 149 MLASMSYLLS-PYESEFDYTDVITMALEELTPVVKV 183 (184)
Q Consensus 149 ~~~~Le~~~~-~~~s~~ea~~li~~~i~~l~~~~~~ 183 (184)
+..+|+.... ..++.++ .|-+..|++.|.++++|
T Consensus 14 Ii~FL~~~~~~~~ls~D~-~ESLeVAiqCI~~aF~v 48 (74)
T 2lxb_A 14 IVNYFSSIVEKKEISEDG-ADSLNVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHHH-HHHHHHHHHHHHHHhCC
Confidence 4456655543 3566654 56678888888888776
No 61
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=20.27 E-value=94 Score=15.34 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHHHHh
Q psy2800 161 ESEFDYTDVITMALEEL 177 (184)
Q Consensus 161 ~s~~ea~~li~~~i~~l 177 (184)
+++++.++++..||+..
T Consensus 9 fdekqieelldncietf 25 (31)
T 4h62_V 9 FDEKQIEELLDNCIETF 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45678889999999865
Done!