RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2800
(184 letters)
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 99.1 bits (246), Expect = 8e-27
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
Y +GGT++ IAG DFA++A DTR+ ++ +I S + K+F + + +G AD +
Sbjct: 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDAL 64
Query: 69 VSRLQAEINR-SAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYS 127
V R + + + + LS+ A + LLY +R FPYYV ++ G+D GKG VYS
Sbjct: 65 VKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYS 124
Query: 128 YDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176
+DPVG E+ R G +A + M +L + + Y +++
Sbjct: 125 FDPVGSYEREQCRAGGAAASLI---MPFLDNQVNFKNQYEPGTNGKVKK 170
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 91.1 bits (225), Expect = 7e-24
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSR 71
+GG VMA+ G + IA+D R +V+ + KIF + ++ +G++G D V R
Sbjct: 6 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 65
Query: 72 LQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGG-VYSYDP 130
L+ +N +G+ + M++ LLYE+R PYY + ++ G+D + S D
Sbjct: 66 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 125
Query: 131 VGH-CEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
+G + + GT A+ M L P + I+ A+
Sbjct: 126 IGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAV 174
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 89.0 bits (220), Expect = 9e-23
Identities = 29/180 (16%), Positives = 68/180 (37%), Gaps = 13/180 (7%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ G +V+++ + +IA+D S + N ++ + + T VGISG+++D +
Sbjct: 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIE 64
Query: 70 SRLQAEI-----NRSAEAKGQPLSLPGTAEMLSLLLYER--RIFPYYVQVLLVGIDGTGK 122
L+ + + + L E L+ ++Y+R ++ P + +++ G+ G
Sbjct: 65 RLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGD 124
Query: 123 GGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
+ + +G G A L + E D ++ +
Sbjct: 125 QFLRYVNLLGVTYSSPTLATGFGAHMA---NPLLRKVVDRESDIPK---TTVQVAEEAIV 178
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 87.5 bits (216), Expect = 2e-22
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 4/171 (2%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
+GG V+A+ G D IA D R S VSN KIF + +GI+G D +
Sbjct: 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGH-VFLGITGLATDVTTL 62
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGT-GKGGVYS 127
+ + N + + + +++S LYERR PY+V ++ GI+ GK +
Sbjct: 63 NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 122
Query: 128 YDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
+D +G ++ + +A L S YE + D+ + L
Sbjct: 123 FDLIGCIDEAKDFIVSGTASDQL--FGMCESLYEPNLEPEDLFETISQALL 171
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 85.7 bits (211), Expect = 1e-21
Identities = 56/171 (32%), Positives = 98/171 (57%), Gaps = 7/171 (4%)
Query: 9 YVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEV 68
YV +GGT++AIAG DFA++ASDTR S +I + + K ++L ++T +G SG D L +
Sbjct: 5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 64
Query: 69 VSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSY 128
++A + + + ++ A MLS +LY RR FPYYV ++ G+D GKG VYS+
Sbjct: 65 TKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124
Query: 129 DPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTP 179
DPVG ++ +++ G+ + + L +++ + ++ + L+
Sbjct: 125 DPVGSYQRDSFKAGGS-------ASAMLQPLLDNQVGFKNMQNVEHVPLSL 168
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 85.1 bits (210), Expect = 4e-21
Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 8/173 (4%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ H GT + I D L+A++ R+ KI++L A ++G +D+ +
Sbjct: 27 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLT 86
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIF----PYYVQVLLVGIDGTGKGGV 125
+ L+ R +P+ L + F P+ V +L +G D +
Sbjct: 87 NELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQL 146
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPY-ESEFDYTDVITMALEEL 177
Y DP G+ G ++ +S L Y E E + +A++ L
Sbjct: 147 YQSDPSGNYGGWKATCIGNNSAAA---VSMLKQDYKEGEMTLKSALALAIKVL 196
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 84.7 bits (209), Expect = 4e-21
Identities = 32/177 (18%), Positives = 69/177 (38%), Gaps = 14/177 (7%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
++ G T + I + +A + R +S + ++ KI + +SG +AD+ ++
Sbjct: 24 IKLGSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLI 82
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYE---------RRIFPYYVQVLLVGIDGT 120
+ + E + +++ + +S L + P+ V +L G+D
Sbjct: 83 DKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK 142
Query: 121 GKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
G ++ DP G + R G++++ S L Y + I +L L
Sbjct: 143 G-PQLFHMDPSGTFVQCDARAIGSASEGA---QSSLQELYHKSMTLKEAIKSSLIIL 195
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 84.3 bits (208), Expect = 6e-21
Identities = 22/172 (12%), Positives = 58/172 (33%), Gaps = 8/172 (4%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V++ T + I D + + S + ++F + + ++G +AD+ +
Sbjct: 30 VENSSTAIGIRCKDGVVFGVEKLVLSK-LYEEGSNKRLFNVDRHVGMAVAGLLADARSLA 88
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR----IFPYYVQVLLVGIDGTGKGGV 125
+ E + G + L A+ +++ ++ + P+ +L +
Sbjct: 89 DIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQL 148
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
Y DP G G + + + + E D++ + +
Sbjct: 149 YMIDPSGVSYGYWGCAIGKARQAA---KTEIEKLQMKEMTCRDIVKEVAKII 197
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 82.1 bits (202), Expect = 2e-20
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 2/169 (1%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V G ++MA+ D ++ +D+R+++ I + K+ R+ ++ SG+ AD+ +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYD 129
+Q + G P S A + L YE + +++ G D KG VY+
Sbjct: 66 DIVQYHLELYTSQYGTP-STETAASVFKELCYENK-DNLTAGIIVAGYDDKNKGEVYTIP 123
Query: 130 PVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
G K+ Y + G+ + F+ S+ + D I +L +
Sbjct: 124 LGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAI 172
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 81.7 bits (201), Expect = 3e-20
Identities = 26/164 (15%), Positives = 65/164 (39%), Gaps = 1/164 (0%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T+MA+ ++ +D+R+++ I + K+ + ++ SG+ AD+ V +
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
++ + +P + A + + Y R +++ G D G VYS G
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEMCY-RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM 120
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
+ ++ + G+ + ++ + ++ + AL
Sbjct: 121 VRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAM 164
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 81.3 bits (200), Expect = 4e-20
Identities = 26/168 (15%), Positives = 62/168 (36%), Gaps = 4/168 (2%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T +A ++A+D+R+++ I S K+ + ++G AD L
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
+ + +S+ +++L+ ++Y+ + + ++ G D G G Y D G+
Sbjct: 62 QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY-VDSEGNR 120
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
A G+ + + + Y + + +A +
Sbjct: 121 ISGATFSVGSGSVYA---YGVMDRGYSYDLEVEQAYDLARRAIYQATY 165
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 81.7 bits (201), Expect = 7e-20
Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G T + I + +IA++ +SSS +S K+ L SG D +V
Sbjct: 28 VKQGVTSLGIKATNGVVIATEKKSSS-PLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLV 86
Query: 70 SRLQAEINRSAEAK-GQPLSLPGTAEMLSLLL----YERRIFPYYVQVLLVGIDGTGKGG 124
+ + + S + G+ ++ ++ + P+ V +L+ G D
Sbjct: 87 DKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFS 146
Query: 125 VYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
+Y DP G G + ++L + E + D I +AL L
Sbjct: 147 LYQVDPSGSYFPWKATAIGKGSVAA---KTFLEKRWNDELELEDAIHIALLTL 196
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 81.7 bits (201), Expect = 7e-20
Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 7/172 (4%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ H GT + I D ++A++ + +S + K+++L ++ AV ++G AD+ ++
Sbjct: 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 87
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIF----PYYVQVLLVGIDGTGKGGV 125
+ + + + + + LS + P+ V + G D +
Sbjct: 88 NTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQL 147
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
Y+ +P G+ G + + L Y+ + D I +AL+ L
Sbjct: 148 YTSNPSGNYTGWKAISVGANTSAA---QTLLQMDYKDDMKVDDAIELALKTL 196
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 81.3 bits (200), Expect = 7e-20
Identities = 27/178 (15%), Positives = 68/178 (38%), Gaps = 14/178 (7%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
++ G T + IA + ++ + R++S + S++ KI + +SG AD+ ++
Sbjct: 23 IKLGSTAIGIATKEGVVLGVEKRATS-PLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 81
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYE----------RRIFPYYVQVLLVGIDG 119
+ + +++ + + L P+ V +L+ G D
Sbjct: 82 EHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA 141
Query: 120 TGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
++ +P G + + G+ ++ + LL+ + S + + L+ L
Sbjct: 142 DDGYQLFHAEPSGTFYRYNAKAIGSGSEGA---QAELLNEWHSSLTLKEAELLVLKIL 196
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 79.4 bits (195), Expect = 2e-19
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 3/167 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
++ I D ++AS + +++ ++ K +L T + +G D+++ +QA
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYE--RRIFPYYVQVLLVGIDGTGKGGV-YSYDPV 131
I + + LS + + L + R PY V VL+ G D Y D +
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 132 GHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
G ++ Y HG S + + + + P + + D++ + ++EL
Sbjct: 123 GTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELE 169
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 79.1 bits (194), Expect = 2e-19
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T + I D ++A++ R + I+ N K+F++ T + I+G + D+ +V ++A
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
E+ + + + A +LS +L + + PY VQ+L+ GID V+S D G
Sbjct: 62 ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGS 119
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
+ Y G+ + F+ + S + + D++ A+
Sbjct: 120 VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAK 163
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 79.4 bits (195), Expect = 3e-19
Identities = 24/164 (14%), Positives = 59/164 (35%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T +A ++A D+R+++ + S ++ + ++G AD + L +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
+ + + +S+ +++LS L+Y+ + + ++ G +Y D G
Sbjct: 62 QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR 121
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
K G+ F + S D + ++
Sbjct: 122 LKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAA 165
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 78.9 bits (194), Expect = 7e-19
Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 6/172 (3%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V++G T + I D + A + +S +V +KI + SG + D +V
Sbjct: 27 VENGTTSIGIKCNDGVVFAVEKLITS-KLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLV 85
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIF----PYYVQVLLVGIDGTGKGGV 125
+R + E + P+ +P A+ L + ++ P+ V + G+D G +
Sbjct: 86 NRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHL 144
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
Y +P G G + A + L+ + + + A + +
Sbjct: 145 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 196
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 78.5 bits (193), Expect = 1e-18
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 8/169 (4%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G T + + G D ++ + +S + KI L + + +G AD+ V+
Sbjct: 25 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVI 83
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYE----RRIFPYYVQVLLVGIDGTGKGGV 125
+R + E P+++ ++ L P+ + L+VG D G +
Sbjct: 84 NRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 143
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMAL 174
Y DP G G AK + +L Y E TD +T+ L
Sbjct: 144 YQTDPSGTYHAWKANAIGRGAKSV---REFLEKNYTDEAIETDDLTIKL 189
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 77.9 bits (191), Expect = 1e-18
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 4/173 (2%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ G +V+ + +IA+D S N +I R+ N T +G SG+ AD +
Sbjct: 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLK 64
Query: 70 SRLQAEINRSAEAK-GQPLSLPGTAEMLSLLLYERRI-FPYYVQVLLVGIDGTGKGGVYS 127
L + G S L+ +Y RR +++G G+ +
Sbjct: 65 QVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGY 124
Query: 128 YDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYE--SEFDYTDVITMALEELT 178
D +G + G A + +L S+ + D++ + L
Sbjct: 125 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLY 177
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 77.8 bits (191), Expect = 1e-18
Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 9/172 (5%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G T + + + L+ SD + S I N+ KI + + A SG +AD+ +V
Sbjct: 19 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLV 77
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIF----PYYVQVLLVGIDGTGKGGV 125
+ + G +++ + ++ + + + PY V ++ GID G +
Sbjct: 78 DFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGP-RL 136
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
+ DP G + G+ + +S+L Y+ + +T+ ++ L
Sbjct: 137 FDCDPAGTINEYKATAIGSGKDAV---VSFLEREYKENLPEKEAVTLGIKAL 185
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 77.8 bits (191), Expect = 1e-18
Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 5/178 (2%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G + + G + ++ + RS+ K+ ++ + + SG ADS ++
Sbjct: 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI 84
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYE----RRIFPYYVQVLLVGIDGTGKGG- 124
+ + E P+++ ++ + + P+ V L+ G D
Sbjct: 85 EKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 144
Query: 125 VYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
+Y +P G + + G ++K + + E + + + + L VV+
Sbjct: 145 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ 202
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 76.8 bits (188), Expect = 2e-18
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
++ I GPD+ L+ASD ++SN + ++ K+F++ + + G D+++ +Q
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK 62
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLL--YERRIFPYYVQVLLVGIDGTGKGGVYSYDPVG 132
+ G LS A L R PY+V +LL G D +Y D +
Sbjct: 63 NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122
Query: 133 HCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
K + HG A L+ + +P S +++ LEEL
Sbjct: 123 ALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQ 168
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 77.1 bits (189), Expect = 3e-18
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 9/175 (5%)
Query: 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVS 70
Q +A+ G D ++ S + + IF + + ++G + D+
Sbjct: 28 QTNINSLAVRGKDCTVVISQKKVPDK-LLDPTTVSYIFCISRTIGMVVNGPIPDARNAAL 86
Query: 71 RLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR----IFPYYVQVLLVGIDGTGKGGVY 126
R +AE G + A+ ++ L + P V + V +D +Y
Sbjct: 87 RAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIY 146
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYL----LSPYESEFDYTDVITMALEEL 177
DP G+ G + + ++ + +E + V+ A+ +
Sbjct: 147 KTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHM 201
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 72.9 bits (178), Expect = 8e-17
Identities = 31/163 (19%), Positives = 69/163 (42%), Gaps = 5/163 (3%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++ + + +IA+DTRS+ + N K+ R+ + +G AD+ V + +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
I + + + +ML L+ + +++ G+D TG ++S G
Sbjct: 62 NIELHSLYTSREPRVVSALQMLKQHLF-KYQGHIGAYLIVAGVDPTGS-HLFSIHAHGST 119
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
+ Y G+ + M+ L S ++ + + I +A + +
Sbjct: 120 DVGYYLSLGSGSLAA---MAVLESHWKQDLTKEEAIKLASDAI 159
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 71.8 bits (175), Expect = 2e-16
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 10/174 (5%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++A+ L+A D R++ I S + K++ +A GI+G ++E+V
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYER--------RIFPYYVQVLLVGIDGTGKGGVY 126
E+ + +G PL+ G A L+ ++ + P V L D + G +
Sbjct: 62 ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 127 SYDPVGH--CEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELT 178
SYD VG E+ Y G+ + F +++ + SP E +L +
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 71.4 bits (174), Expect = 3e-16
Identities = 36/168 (21%), Positives = 74/168 (44%), Gaps = 3/168 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T + + D ++A++ R++ I S KI+++ ++ A+ +G++ D+ + ++
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
E N + + ++ A + S LL R FPY VQ+L+ GID GK G
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAI 121
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
E+ G+ + L + E + + +A+ + +K
Sbjct: 122 EEKDIVATGSGSLTA---YGVLEDRFTPEIGVDEAVELAVRAIYSAMK 166
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 71.3 bits (174), Expect = 4e-16
Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 7/171 (4%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V G + I + ++A++ + S + K+ + + SG D +V
Sbjct: 28 VAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLV 86
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERR---IFPYYVQVLLVGIDGTGKGGVY 126
R + + +P+ + ++ ++ E + LL+ G+ ++
Sbjct: 87 HRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLF 146
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
DP G G + ++L Y + + D I A+ L
Sbjct: 147 QSDPSGAYFAWKATAMGKNYVNG---KTFLEKRYNEDLELEDAIHTAILTL 194
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 70.2 bits (171), Expect = 8e-16
Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T+ + D ++ +DTR++ + N KI + +G AD+ + +
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
+ + + G+ + ML + R ++L G+D TG +YS P G
Sbjct: 62 NLELHSLSTGRLPRVVTANRMLK-QMLFRYRGYIGAALVLGGVDVTGP-HLYSIYPHGST 119
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEE 176
+K+ Y G+ + +A P E + ++++ A+
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAA 161
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 70.4 bits (172), Expect = 1e-15
Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 10/173 (5%)
Query: 11 QHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVS 70
Q G T +A+ G D A+I + + + S+ +F++ ++G ADS V
Sbjct: 33 QGGLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQ 91
Query: 71 RLQAEINRSAEAKGQPLSLPGTAEMLSLL----LYERRIFPYYVQVLLVGIDGTGKGGVY 126
R + E G + + + ++ + + P ++L+GID VY
Sbjct: 92 RARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVY 151
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYL--LSPYESEFDYTDVITMALEEL 177
DP G+ G S+L + ++ + + A+ L
Sbjct: 152 KCDPAGYYCGFKATAAGVKQTES---TSFLEKKVKKKFDWTFEQTVETAITCL 201
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 70.1 bits (171), Expect = 1e-15
Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G T + I + ++ +D R S + + KI+++ SG +AD+ ++
Sbjct: 28 VKRGATAIGIKCKEGVILIADKRVGS-KLLEKDTIEKIYKIDEHICAATSGLVADARVLI 86
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIF----PYYVQVLLVGIDGTGKGGV 125
R + E + P+++ A+ + + + P+ V +L+ G++ K +
Sbjct: 87 DRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPK--L 144
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
Y DP G + G + + Y + + D + + L +
Sbjct: 145 YETDPSGALLEYKATAIGMGRMAV---TEFFEKEYRDDLSFDDAMVLGLVAM 193
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 68.6 bits (167), Expect = 4e-15
Identities = 27/178 (15%), Positives = 76/178 (42%), Gaps = 9/178 (5%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
++ G + + A++ + R++ +S+ Q KI + + ++G D+ +
Sbjct: 28 IKQGSVTVGLRSNTHAVLVALKRNAD---ELSSYQKKIIKCDEHMGLSLAGLAPDARVLS 84
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIF----PYYVQVLLVGIDGTGKGGV 125
+ L+ + N S+ + L++ +L + PY V +L++G D +G +
Sbjct: 85 NYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG-AHL 143
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASM-SYLLSPYESEFDYTDVITMALEELTPVVK 182
+ P G+ ++ G ++ + L + + + + ++I +E ++ ++
Sbjct: 144 LEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLR 201
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 66.6 bits (162), Expect = 2e-14
Identities = 31/177 (17%), Positives = 70/177 (39%), Gaps = 9/177 (5%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
V+ G + + A++ + R+ S ++ +Q KI + N + I+G AD+ +
Sbjct: 26 VKQGSATVGLKSKTHAVLVALKRAQSE---LAAHQKKILHVDNHIGISIAGLTADARLLC 82
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLL--LYERRI--FPYYVQVLLVGIDGTGKGGV 125
+ ++ E S +PL + ++ + +R PY V +L+ G D G +
Sbjct: 83 NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP-HI 141
Query: 126 YSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEELTPVVK 182
+ P + G ++ + +S + E + +++ L L +
Sbjct: 142 FQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM-ECNLNELVKHGLRALRETLP 197
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 66.2 bits (161), Expect = 3e-14
Identities = 20/175 (11%), Positives = 54/175 (30%), Gaps = 17/175 (9%)
Query: 10 VQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVV 69
+ G +V+ + D L ++ S++ K+ L ++ G + +
Sbjct: 16 IARGRSVVVLTFRDGVLFVAENPSTA--------LHKVSELYDRLGFAAVGKYNEFENLR 67
Query: 70 SRLQAEIN-RSAEAKGQPLSLPGTAEMLSLL---LYERRIFPYYVQVLLVGIDGT---GK 122
+ R + ++ A + ++ + PY V++ + +
Sbjct: 68 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKA 127
Query: 123 GGVYSYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
+Y G V + + + Y ++ D + +A+ L
Sbjct: 128 PQLYRITYDGSI--VDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNAL 180
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 63.6 bits (154), Expect = 1e-13
Identities = 15/161 (9%), Positives = 44/161 (27%), Gaps = 9/161 (5%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++ + ++ D + + T++ N K+ +L + +
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFE 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
R ++ + + + R V + S +
Sbjct: 62 AKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVA-------DKENIFIISGNGEVIQ 114
Query: 135 EKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALE 175
G+ + LA+ L ++ +++ A+
Sbjct: 115 PDDDAAAIGSGGPYALAAAKAL--LRNTDLSAREIVEKAMT 153
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 61.0 bits (147), Expect = 1e-12
Identities = 20/166 (12%), Positives = 50/166 (30%), Gaps = 10/166 (6%)
Query: 12 HGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQ--TAVGISGNMADSLEVV 69
H T+ A+ + ++ D + + +V + + R G +G++AD+ +
Sbjct: 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLF 63
Query: 70 SRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYD 129
+ +A++ + +L + + + S
Sbjct: 64 EKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLI--------VMNQDTLLLVSGT 115
Query: 130 PVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALE 175
G+ + LA+ L +++ ALE
Sbjct: 116 GEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALE 161
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 53.6 bits (128), Expect = 4e-10
Identities = 17/142 (11%), Positives = 42/142 (29%), Gaps = 6/142 (4%)
Query: 15 TVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSLEVVSRLQA 74
T++++ ++ D + S T++ N K+ RL N + + L
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFE 61
Query: 75 EINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVYSYDPVGHC 134
+ + + ++ +L+ D + V
Sbjct: 62 RKLE------MHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQP 115
Query: 135 EKVAYRLHGTSAKFMLASMSYL 156
E+ G+ + L++ L
Sbjct: 116 EEDQILAIGSGGNYALSAARAL 137
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
papillomavirus type 16 [TaxId: 333760]}
Length = 455
Score = 28.5 bits (64), Expect = 0.41
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 30/100 (30%)
Query: 7 EHYVQ------HGGT--VMAIAGPDFALIASDTRSSSNGTI----VSNNQLKIFRL---- 50
+ YV H GT ++A+ P F + + +N I VS Q ++FR+
Sbjct: 6 DEYVARTNIYYHAGTSRLLAVGHPYFPI-----KKPNNNKILVPKVSGLQYRVFRIHLPD 60
Query: 51 PNQTAVGISGNM--ADSLEVVSRLQA-EINRSAEAKGQPL 87
PN+ + D+ +V E+ R GQPL
Sbjct: 61 PNKFGF-PDTSFYNPDTQRLVWACVGVEVGR-----GQPL 94
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 26.9 bits (59), Expect = 1.6
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 111 QVLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAK 147
+ V +D G++ Y P+ + +R HG + +
Sbjct: 163 GITFVVVDEPKLPGLFPYRPITTTDYAYFRFHGRNER 199
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.5 bits (57), Expect = 1.8
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 112 VLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFMLASM 153
V++ G+ G G + L + + S
Sbjct: 4 VVVTGVPGVGSTTS--------SQLAMDNLRKEGVNYKMVSF 37
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 26.4 bits (57), Expect = 2.1
Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 4/171 (2%)
Query: 7 EHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLPNQTAVGISGNMADSL 66
EH V HG +A+A + +S+ ++ N T + +
Sbjct: 19 EHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQG 78
Query: 67 EVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLVGIDGTGKGGVY 126
+V + ++ + + G P G + L + Q L +D V+
Sbjct: 79 DVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIM----VW 134
Query: 127 SYDPVGHCEKVAYRLHGTSAKFMLASMSYLLSPYESEFDYTDVITMALEEL 177
S P G + A +L + + +P + L+ +
Sbjct: 135 SELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSI 185
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 25.7 bits (55), Expect = 3.5
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 8/39 (20%)
Query: 112 VLLVGIDGTGKGGVYSYDPVGHCEKVAYRLHGTSAKFML 150
++ GI G GK V KV L +
Sbjct: 4 GIVTGIPGVGKSTV--------LAKVKEILDNQGINNKI 34
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 25.3 bits (54), Expect = 3.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 95 MLSLLLYERRIFPYYVQVLLVGIDGTGK 122
+LS+L + V++LL+G+D GK
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGK 29
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 24.4 bits (52), Expect = 8.4
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 7 EHYVQHGGTVMAIAGPDFALIASDTRSSSNGTIVSNNQLKIFRLP 51
EH V +G +++A + I + N+ K L
Sbjct: 19 EHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLN 63
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 24.3 bits (52), Expect = 9.7
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 56 VGISGNMADSLEVVSRLQAEINRSAEAKGQPLSLPGTAEMLSLLLYERRIFPYYVQVLLV 115
+G S + + + V R+ +++ R +P E+ ++ Y++ +L
Sbjct: 38 IGGSDGVTE--DNVLRMMSKVRRF--------LVPCVLEVSAIEAIVPGFDLYFIPSVLN 87
Query: 116 GID 118
+
Sbjct: 88 SKN 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,546
Number of extensions: 27493
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 47
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)