BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2801
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 72.4 bits (176), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 43 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 96
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 97 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 130
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVSV--CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 46 VANSFAVTAAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 99
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 100 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 133
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 72.0 bits (175), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 51 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 104
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 105 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 138
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 71.6 bits (174), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 43 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 96
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 97 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 130
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP FP P
Sbjct: 43 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHP--- 99
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 100 ---FVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 130
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S + S+ T + FITP FP P
Sbjct: 41 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNAITSFCGTLHVSFITPSFPTDGTHP--- 97
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 98 ---FVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 128
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFSRGV+++ G S +T S+ F+TP F P+ + + I MRP
Sbjct: 63 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF------PTDADVQFVIQMRPA 116
Query: 71 YHQAIIDTVKYYGWKNIIYMYDSH 94
AI+ + YY W+ +Y+YD+
Sbjct: 117 LKGAILSLLSYYKWEKFVYLYDTE 140
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFS+GV+++ G + + S+ + FITP FP + S+ F+ + +RP+
Sbjct: 61 CSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP---VDTSNQFV---LQLRPE 114
Query: 71 YHQAIIDTVKYYGWKNIIYMYDS 93
+A+I + +Y W+ +Y+YD+
Sbjct: 115 LQEALISIIDHYKWQTFVYIYDA 137
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+Q+SRGVF++ G S T S+ + + ITP F P+ G + + +RP
Sbjct: 63 CSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSF------PTEGESQFVLQLRPS 116
Query: 71 YHQAIIDTVKYYGWKNIIYMYDS 93
A++ + +Y W +++YD+
Sbjct: 117 LRGALLSLLDHYEWNCFVFLYDT 139
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+Q S GV ++ G S + S N +P I + +V F +S+ PD
Sbjct: 65 CDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFY---VSLYPD 121
Query: 71 YH---QAIIDTVKYYGWKNIIYMYD 92
+ +AI+D V+++ WK + +YD
Sbjct: 122 FSSLSRAILDLVQFFKWKTVTVVYD 146
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+Q S GV ++ G S + S N +P I + +V F +S+ PD
Sbjct: 65 CDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFY---VSLYPD 121
Query: 71 YH---QAIIDTVKYYGWKNIIYMYD 92
+ +AI+D V+++ WK + +YD
Sbjct: 122 FSSLSRAILDLVQFFKWKTVTVVYD 146
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+Q + GV ++ G + S N ++P I + L F +++ PD
Sbjct: 68 CDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFY---VNLYPD 124
Query: 71 Y---HQAIIDTVKYYGWKNIIYMYD 92
Y AI+D V+ W++ +YD
Sbjct: 125 YASLSHAILDLVQSLKWRSATVVYD 149
>pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
Length = 308
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 23 GAVSPDSFDTFHSYSNTFQMPFI----TPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDT 78
G V+ D ++P + TP+ E L + + A+SM + +D
Sbjct: 136 GKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD 195
Query: 79 VKYYGWKNIIYMYDSHDEMFYEG-SPEFLRVFCHEKLNISVWNRN 122
V+ + + ++H EMF E + EF+ + E++N VW R
Sbjct: 196 VEQAPLTTLGPVLETH-EMFPERVNVEFIEILNEEEMNFRVWERG 239
>pdb|1KVP|A Chain A, Structural Analysis Of The Spiroplasma Virus, Spv4,
Implications For Evolutionary Variation To Obtain Host
Diversity Among The Microviridae, Electron Microscopy,
Alpha Carbons Only
Length = 497
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 20 SMLGAVSPDSFDT----FHSYSNTFQMPFITPWFPEKVLA 55
+ LG ++PD+ F Y N + F PW P++ A
Sbjct: 107 AFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEA 146
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 25 VSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAI 75
+S SF F + QM F P F +++ +G L Y I + DY +A+
Sbjct: 63 ISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEAL 113
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 16 RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAI 75
R V ++ G SP H T F P PE +L G++ A+ +H
Sbjct: 136 RIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYI--AVEFANIFHGLG 193
Query: 76 IDTVKYYGWKNIIYMYDSHDEMFYEGSPE--FLRVFCHE 112
+ T Y K I+ +D + E +R+ C +
Sbjct: 194 VKTTLIYRGKEILSRFDQDXRRGLHAAXEEKGIRILCED 232
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 61 LDYAISMR-PDYHQAIIDTVKYYGWKNIIYMYDSHDEMF 98
++Y I ++ PDY D V NI+ M D HD+MF
Sbjct: 1 MEYLIGIQGPDYVLVASDRV---AASNIVQMKDDHDKMF 36
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 201
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 61 LDYAISMR-PDYHQAIIDTVKYYGWKNIIYMYDSHDEMF 98
++Y I ++ PDY D V NI+ M D HD+MF
Sbjct: 1 MEYLIGIQGPDYVLVASDRV---AASNIVQMKDDHDKMF 36
>pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage
Phix174 And Its Functional Implications
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 20 SMLGAVSPDSFDT----FHSYSNTFQMPFITPWFPEKVLA 55
+ LG ++PD+ F Y N + F PW P++ A
Sbjct: 107 AFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEA 146
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 20 SMLGAVSPDSFDT----FHSYSNTFQMPFITPWFPEKVLA 55
+ LG ++PD+ F Y N + F PW P++ A
Sbjct: 107 AFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEA 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,026,657
Number of Sequences: 62578
Number of extensions: 157931
Number of successful extensions: 445
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 25
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)