BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2801
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03445|GLK1_DROME Glutamate receptor 1 OS=Drosophila melanogaster GN=Glu-RI PE=2 SV=2
Length = 991
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 85/89 (95%)
Query: 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRP 69
+CNQFSRGV+SMLGAVSPDSFDT HSYSNTFQMPF+TPWFPEKVLAPSSG LD+AISMRP
Sbjct: 94 ICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLAPSSGLLDFAISMRP 153
Query: 70 DYHQAIIDTVKYYGWKNIIYMYDSHDEMF 98
DYHQAIIDT++YYGW++IIY+YDSHD +
Sbjct: 154 DYHQAIIDTIQYYGWQSIIYLYDSHDGLL 182
>sp|P23819|GRIA2_MOUSE Glutamate receptor 2 OS=Mus musculus GN=Gria2 PE=1 SV=3
Length = 883
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 67 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 120
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 121 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 154
>sp|Q38PU7|GRIA2_MACFA Glutamate receptor 2 OS=Macaca fascicularis GN=GRIA2 PE=2 SV=1
Length = 883
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 67 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 120
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 121 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 154
>sp|P19491|GRIA2_RAT Glutamate receptor 2 OS=Rattus norvegicus GN=Gria2 PE=1 SV=2
Length = 883
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 67 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 120
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 121 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 154
>sp|P42262|GRIA2_HUMAN Glutamate receptor 2 OS=Homo sapiens GN=GRIA2 PE=1 SV=3
Length = 883
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 67 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 120
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 121 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 154
>sp|Q5R4M0|GRIA2_PONAB Glutamate receptor 2 OS=Pongo abelii GN=GRIA2 PE=2 SV=1
Length = 883
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 2 IQNVFFVS--VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG 59
+ N F V+ C+QFSRGV+++ G S +T S+ T + FITP F P+ G
Sbjct: 67 VANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF------PTDG 120
Query: 60 FLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDS 93
+ I MRPD A++ ++YY W Y+YDS
Sbjct: 121 THPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDS 154
>sp|P19492|GRIA3_RAT Glutamate receptor 3 OS=Rattus norvegicus GN=Gria3 PE=1 SV=1
Length = 888
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFSRGV+++ G S +T S+ F+TP F P+ + + I MRP
Sbjct: 85 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF------PTDADVQFVIQMRPA 138
Query: 71 YHQAIIDTVKYYGWKNIIYMYDSH 94
AI+ + YY W+ +Y+YD+
Sbjct: 139 LKGAILSLLSYYKWEKFVYLYDTE 162
>sp|P26591|GLRK_LYMST Glutamate receptor OS=Lymnaea stagnalis PE=2 SV=1
Length = 917
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
++C+ SRG ++ G + S T SY++TF +PF+T + +S Y I MR
Sbjct: 78 ALCHHLSRGDLAIFGVSNASSLATIQSYTDTFNVPFVTISMAQN----NSHNGSYQIYMR 133
Query: 69 PDYHQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNISVWNRNLCNI 126
P Y A++D + +Y W+ + + YDS DE F ++K+ IS+ + + ++
Sbjct: 134 PMYINALVDVIVHYRWEKVAFYYDS-DEGLVRLQQLFQATNKYDKMIISIDTKRITSV 190
>sp|Q9Z2W9|GRIA3_MOUSE Glutamate receptor 3 OS=Mus musculus GN=Gria3 PE=1 SV=2
Length = 888
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFSRGV+++ G S +T S+ F+TP F P+ + + I MRP
Sbjct: 85 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF------PTDADVQFVIQMRPA 138
Query: 71 YHQAIIDTVKYYGWKNIIYMYDSH 94
AI+ + YY W+ +Y+YD+
Sbjct: 139 LKGAILSLLGYYKWEKFVYLYDTE 162
>sp|Q38PU6|GRIA3_MACFA Glutamate receptor 3 OS=Macaca fascicularis GN=GRIA3 PE=2 SV=1
Length = 894
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFSRGV+++ G S +T S+ F+TP F P+ + + I MRP
Sbjct: 91 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF------PTDADVQFVIQMRPA 144
Query: 71 YHQAIIDTVKYYGWKNIIYMYDSH 94
AI+ + +Y W+ +Y+YD+
Sbjct: 145 LKGAILSLLGHYKWEKFVYLYDTE 168
>sp|P42263|GRIA3_HUMAN Glutamate receptor 3 OS=Homo sapiens GN=GRIA3 PE=1 SV=2
Length = 894
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFSRGV+++ G S +T S+ F+TP F P+ + + I MRP
Sbjct: 91 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF------PTDADVQFVIQMRPA 144
Query: 71 YHQAIIDTVKYYGWKNIIYMYDSH 94
AI+ + +Y W+ +Y+YD+
Sbjct: 145 LKGAILSLLGHYKWEKFVYLYDTE 168
>sp|P19493|GRIA4_RAT Glutamate receptor 4 OS=Rattus norvegicus GN=Gria4 PE=1 SV=1
Length = 902
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
+ C+Q+SRGVF++ G S T S+ + + ITP F P+ G + + +R
Sbjct: 82 AFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSF------PTEGESQFVLQLR 135
Query: 69 PDYHQAIIDTVKYYGWKNIIYMYDS 93
P A++ + +Y W +++YD+
Sbjct: 136 PSLRGALLSLLDHYEWNCFVFLYDT 160
>sp|Q9Z2W8|GRIA4_MOUSE Glutamate receptor 4 OS=Mus musculus GN=Gria4 PE=1 SV=2
Length = 902
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
+ C+Q+SRGVF++ G S T S+ + + ITP F P+ G + + +R
Sbjct: 82 AFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSF------PTEGESQFVLQLR 135
Query: 69 PDYHQAIIDTVKYYGWKNIIYMYDS 93
P A++ + +Y W +++YD+
Sbjct: 136 PSLRGALLSLLDHYEWNCFVFLYDT 160
>sp|Q38PU5|GRIA4_MACFA Glutamate receptor 4 OS=Macaca fascicularis GN=GRIA4 PE=2 SV=1
Length = 902
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
+ C+Q+SRGVF++ G S T S+ + + ITP F P+ G + + +R
Sbjct: 82 AFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSF------PTEGESQFVLQLR 135
Query: 69 PDYHQAIIDTVKYYGWKNIIYMYDS 93
P A++ + +Y W +++YD+
Sbjct: 136 PSLRGALLSLLDHYEWNCFVFLYDT 160
>sp|P48058|GRIA4_HUMAN Glutamate receptor 4 OS=Homo sapiens GN=GRIA4 PE=2 SV=2
Length = 902
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
+ C+Q+SRGVF++ G S T S+ + + ITP F P+ G + + +R
Sbjct: 82 AFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSF------PTEGESQFVLQLR 135
Query: 69 PDYHQAIIDTVKYYGWKNIIYMYDS 93
P A++ + +Y W +++YD+
Sbjct: 136 PSLRGALLSLLDHYEWNCFVFLYDT 160
>sp|P23818|GRIA1_MOUSE Glutamate receptor 1 OS=Mus musculus GN=Gria1 PE=1 SV=1
Length = 907
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFS+GV+++ G + + S+ + FITP FP + S+ F+ + +RP+
Sbjct: 75 CSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP---VDTSNQFV---LQLRPE 128
Query: 71 YHQAIIDTVKYYGWKNIIYMYDS 93
+A+I + +Y W+ +Y+YD+
Sbjct: 129 LQEALISIIDHYKWQTFVYIYDA 151
>sp|P19490|GRIA1_RAT Glutamate receptor 1 OS=Rattus norvegicus GN=Gria1 PE=1 SV=2
Length = 907
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFS+GV+++ G + + S+ + FITP FP + S+ F+ + +RP+
Sbjct: 75 CSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP---VDTSNQFV---LQLRPE 128
Query: 71 YHQAIIDTVKYYGWKNIIYMYDS 93
+A+I + +Y W+ +Y+YD+
Sbjct: 129 LQEALISIIDHYKWQTFVYIYDA 151
>sp|Q38PU8|GRIA1_MACFA Glutamate receptor 1 OS=Macaca fascicularis GN=GRIA1 PE=2 SV=1
Length = 906
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFS+GV+++ G + + S+ + FITP FP + S+ F+ + +RP+
Sbjct: 75 CSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP---VDTSNQFV---LQLRPE 128
Query: 71 YHQAIIDTVKYYGWKNIIYMYDS 93
A+I + +Y W+ +Y+YD+
Sbjct: 129 LQDALISIIDHYKWQKFVYIYDA 151
>sp|P42261|GRIA1_HUMAN Glutamate receptor 1 OS=Homo sapiens GN=GRIA1 PE=1 SV=2
Length = 906
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD 70
C+QFS+GV+++ G + + S+ + FITP FP + S+ F+ + +RP+
Sbjct: 75 CSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP---VDTSNQFV---LQLRPE 128
Query: 71 YHQAIIDTVKYYGWKNIIYMYDS 93
A+I + +Y W+ +Y+YD+
Sbjct: 129 LQDALISIIDHYKWQKFVYIYDA 151
>sp|Q10914|GLR2_CAEEL Glutamate receptor 2 OS=Caenorhabditis elegans GN=glr-2 PE=1 SV=3
Length = 977
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKV--LAPSSGFLDYAISM 67
+C++ G ML + ++ + +N +MP I W P K + ++ S+
Sbjct: 86 ICDEMKLGYMLMLAGTNFKNYGIYEDIANHMKMPLID-WEPSKSENIGKTTENNPMIFSV 144
Query: 68 RPDYHQAIIDTVKYYGWKNIIYMYDSHD------EMF---YEGSPEF 105
P Q +ID ++Y GW++++Y++D + MF +E SP++
Sbjct: 145 APSAEQLLIDYIQYKGWRDVVYIHDGKNADRTLRTMFSYLHEKSPKY 191
>sp|P39086|GRIK1_HUMAN Glutamate receptor ionotropic, kainate 1 OS=Homo sapiens GN=GRIK1
PE=1 SV=1
Length = 918
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-TPWFPEKVLAPSSGFLD-YAISMR 68
C+Q + GV ++ G S S N ++P I T W PS D + I++
Sbjct: 97 CDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRW-----KHPSVDNKDLFYINLY 151
Query: 69 PDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY +AI+D V YY WK + +Y+
Sbjct: 152 PDYAAISRAILDLVLYYNWKTVTVVYE 178
>sp|Q38PU4|GRIK1_MACFA Glutamate receptor ionotropic, kainate 1 OS=Macaca fascicularis
GN=GRIK1 PE=2 SV=1
Length = 918
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-TPWFPEKVLAPSSGFLD-YAISMR 68
C+Q + GV ++ G S S N ++P I T W PS D + I++
Sbjct: 97 CDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRW-----KHPSVDNKDLFYINLY 151
Query: 69 PDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY +AI+D V YY WK + +Y+
Sbjct: 152 PDYAAISRAILDLVLYYNWKTVTVVYE 178
>sp|P22756|GRIK1_RAT Glutamate receptor ionotropic, kainate 1 OS=Rattus norvegicus
GN=Grik1 PE=1 SV=3
Length = 949
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 11 CNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-TPWFPEKVLAPSSGFLD-YAISMR 68
C+Q + GV ++ G S S N ++P I T W PS D + I++
Sbjct: 97 CDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRW-----KHPSVDSRDLFYINLY 151
Query: 69 PDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY +A++D V YY WK + +Y+
Sbjct: 152 PDYAAISRAVLDLVLYYNWKTVTVVYE 178
>sp|P42260|GRIK2_RAT Glutamate receptor ionotropic, kainate 2 OS=Rattus norvegicus
GN=Grik2 PE=1 SV=2
Length = 908
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q S GV ++ G S + S N +P I + +V F +S+
Sbjct: 94 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFY---VSLY 150
Query: 69 PDYH---QAIIDTVKYYGWKNIIYMYD 92
PD+ +AI+D V+++ WK + +YD
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYD 177
>sp|P39087|GRIK2_MOUSE Glutamate receptor ionotropic, kainate 2 OS=Mus musculus GN=Grik2
PE=1 SV=4
Length = 908
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q S GV ++ G S + S N +P I + +V F +S+
Sbjct: 94 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFY---VSLY 150
Query: 69 PDYH---QAIIDTVKYYGWKNIIYMYD 92
PD+ +AI+D V+++ WK + +YD
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYD 177
>sp|Q38PU3|GRIK2_MACFA Glutamate receptor ionotropic, kainate 2 OS=Macaca fascicularis
GN=GRIK2 PE=2 SV=1
Length = 908
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q S GV ++ G S + S N +P I + +V F +S+
Sbjct: 94 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFY---VSLY 150
Query: 69 PDYH---QAIIDTVKYYGWKNIIYMYD 92
PD+ +AI+D V+++ WK + +YD
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYD 177
>sp|Q13002|GRIK2_HUMAN Glutamate receptor ionotropic, kainate 2 OS=Homo sapiens GN=GRIK2
PE=1 SV=1
Length = 908
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q S GV ++ G S + S N +P I + +V F +S+
Sbjct: 94 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFY---VSLY 150
Query: 69 PDYH---QAIIDTVKYYGWKNIIYMYD 92
PD+ +AI+D V+++ WK + +YD
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYD 177
>sp|O43424|GRID2_HUMAN Glutamate receptor ionotropic, delta-2 OS=Homo sapiens GN=GRID2
PE=2 SV=2
Length = 1007
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-----TPWFPEKV--LAPSSGFLD 62
C ++G+ +++ ++ S + S ++ +P + T P L S+ D
Sbjct: 82 ACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGCGLTRSNRNDD 141
Query: 63 YAISMRPD--YHQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNISV 118
Y +S+RP H I+ V Y W+ I YDS E G EFL + +++++
Sbjct: 142 YTLSVRPPVYLHDVILRVVTEYAWQKFIIFYDS--EYDIRGIQEFLDKVSQQGMDVAL 197
>sp|Q60934|GRIK1_MOUSE Glutamate receptor ionotropic, kainate 1 OS=Mus musculus GN=Grik1
PE=2 SV=2
Length = 836
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-TPWFPEKVLAPSSGFLD-YAISM 67
C+Q + GV ++ G S S N ++P I T W PS D + I++
Sbjct: 96 ACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRW-----KHPSVDNRDLFYINL 150
Query: 68 RPDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY +A++D V YY WK + +Y+
Sbjct: 151 YPDYAAISRAVLDLVLYYNWKTVTVVYE 178
>sp|Q61625|GRID2_MOUSE Glutamate receptor ionotropic, delta-2 OS=Mus musculus GN=Grid2
PE=1 SV=1
Length = 1007
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-----TPWFPEKV--LAPSSGFLD 62
C ++G+ +++ ++ S + S ++ +P + T P L S+ D
Sbjct: 82 ACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGCGLTRSNRNDD 141
Query: 63 YAISMRPD--YHQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNISV 118
Y +S+RP ++ I+ V Y W+ I YDS E G EFL + +++++
Sbjct: 142 YTLSVRPPVYLNEVILRVVTEYAWQKFIIFYDS--EYDIRGIQEFLDKVSQQGMDVAL 197
>sp|Q63226|GRID2_RAT Glutamate receptor ionotropic, delta-2 OS=Rattus norvegicus
GN=Grid2 PE=1 SV=2
Length = 1007
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-----TPWFPEKV--LAPSSGFLD 62
C ++G+ +++ ++ S + S ++ +P + T P L S+ D
Sbjct: 82 ACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGCGLTRSNRNDD 141
Query: 63 YAISMRPD--YHQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNISV 118
Y +S+RP ++ I+ V Y W+ I YDS E G EFL + +++++
Sbjct: 142 YTLSVRPPVYLNEVILRVVTEYAWQKFIIFYDS--EYDIRGIQEFLDKVSQQGMDVAL 197
>sp|Q38PU2|GRIK3_MACFA Glutamate receptor ionotropic, kainate 3 OS=Macaca fascicularis
GN=GRIK3 PE=2 SV=1
Length = 919
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q + GV ++ G + S N ++P I + L F +++
Sbjct: 97 KACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFY---VNLY 153
Query: 69 PDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY AI+D V+Y W++ +YD
Sbjct: 154 PDYASLSHAILDLVQYLKWRSATVVYD 180
>sp|Q13003|GRIK3_HUMAN Glutamate receptor ionotropic, kainate 3 OS=Homo sapiens GN=GRIK3
PE=2 SV=3
Length = 919
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q + GV ++ G + S N ++P I + L F +++
Sbjct: 97 KACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFY---VNLY 153
Query: 69 PDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY AI+D V+Y W++ +YD
Sbjct: 154 PDYASLSHAILDLVQYLKWRSATVVYD 180
>sp|P34299|GLR1_CAEEL Glutamate receptor 1 OS=Caenorhabditis elegans GN=glr-1 PE=1 SV=2
Length = 962
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI--TPWFPEKVLAPSSGFLDYAIS 66
+VC++ G ++L +V + S+ +MP + T + G L + +S
Sbjct: 86 AVCDELKEGAMALLSSVDGKGREGIRGVSDALEMPLVSLTALSNDDHQQQQFGNL-FEVS 144
Query: 67 MRPDYHQAIIDTVKYYGWKNIIYMYD 92
+RP + + D + + GW ++ + D
Sbjct: 145 VRPPISELLADFIVHKGWGEVLVLID 170
>sp|Q9SDQ4|GLR37_ARATH Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2
Length = 921
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 9 SVCNQF----------SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSS 58
S CN F + V +M+G +S T + P ++ + P+
Sbjct: 77 SACNVFRGSFGAFELLEKEVVAMIGPISSSVAHTISDIAKGLHFPLVSFAATD----PTL 132
Query: 59 GFLDYAISMRP---DYHQ--AIIDTVKYYGWKNIIYMYDSHDEMFYEG 101
L + +R D HQ A++D + +YGWK +I +Y S DE+ G
Sbjct: 133 SALQFPFFLRTTPNDAHQMSALVDLINFYGWKEVISVY-SDDELGRNG 179
>sp|P42264|GRIK3_RAT Glutamate receptor ionotropic, kainate 3 OS=Rattus norvegicus
GN=Grik3 PE=1 SV=1
Length = 919
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q + GV ++ G + S N ++P I + L F +++
Sbjct: 97 KACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFY---VNLY 153
Query: 69 PDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY AI+D V+ W++ +YD
Sbjct: 154 PDYASLSHAILDLVQSLKWRSATVVYD 180
>sp|B1AS29|GRIK3_MOUSE Glutamate receptor ionotropic, kainate 3 OS=Mus musculus GN=Grik3
PE=2 SV=1
Length = 919
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMR 68
C+Q + GV ++ G + S N ++P I + L F +++
Sbjct: 97 KACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFY---VNLY 153
Query: 69 PDY---HQAIIDTVKYYGWKNIIYMYD 92
PDY AI+D V+ W++ +YD
Sbjct: 154 PDYASLSHAILDLVQSLKWRSATVVYD 180
>sp|A9IJZ8|ECTC_BORPD L-ectoine synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM
12804 / CCUG 43448) GN=ectC PE=3 SV=1
Length = 133
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 73 QAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFC 110
+ I D KY ++Y + HDE + G E LRV C
Sbjct: 69 ETIADGKKYELGPGVVYALNEHDEHWLCGGKEPLRVIC 106
>sp|P91685|GRM_DROME Metabotropic glutamate receptor OS=Drosophila melanogaster
GN=mGluRA PE=1 SV=2
Length = 976
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 12 NQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY 71
N S VF ++G + F +P ++P K L+ + F +A ++ PD
Sbjct: 143 NASSGPVFGVIGGSYSSVSLQVANLLRLFHIPQVSPASTAKTLSDKTRFDLFARTVPPDT 202
Query: 72 HQ--AIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNISVWNRNLC 124
Q A++D +K + W Y+ H E Y + E L+ RN+C
Sbjct: 203 FQSVALVDILKNFNWS---YVSTIHSEGSYGE-------YGIEALHKEATERNVC 247
>sp|Q68Y21|GRID2_DANRE Glutamate receptor ionotropic, delta-2 OS=Danio rerio GN=grid2 PE=2
SV=1
Length = 1009
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFI-----TPWFPEKVLAPSSGFL--D 62
C +RG+ +++ ++ S + S ++ +P + P P++ D
Sbjct: 82 ACELMNRGILALVSSIGCMSAGSLQSLADAMHIPHLFIQRAPAGTPRSSCPPTTRAQPDD 141
Query: 63 YAISMRPD--YHQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNISV 118
Y + +RP + I V Y W+ I YD+ ++ G FL + +++S+
Sbjct: 142 YTLFVRPPVYLNDVIFQVVMEYTWQKFIIFYDTDYDI--RGIENFLDQTSQQGMDVSL 197
>sp|Q5V4K3|HIS8_HALMA Histidinol-phosphate aminotransferase OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=hisC PE=3 SV=1
Length = 360
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 51 EKVLAPSSGFLDYAISMR--------------PDYHQAIIDTVKYYGWKNIIYMYDSHDE 96
+ VL PS GF YA+S R D+ Q +K Y + I+Y+ H+
Sbjct: 107 QDVLVPSPGFAYYAMSARYHHGEVNEYTLSKADDFAQTADTVLKDYDGERIVYLTSPHNP 166
Query: 97 MFYEGSPEFLRVFCHE 112
E + + +R E
Sbjct: 167 TGAEFTTDAVRTIAEE 182
>sp|P19192|F_BPCHP Capsid protein VP1 OS=Chlamydia phage 1 GN=ORF1 PE=1 SV=2
Length = 596
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 29 SFDTFHSYSNTFQMPFITPWFPEKVL 54
SFD H Y TF M ++ P+F ++VL
Sbjct: 27 SFDRSHGYKTTFDMDYLVPFFVDEVL 52
>sp|A0RKC7|DAPF_BACAH Diaminopimelate epimerase OS=Bacillus thuringiensis (strain Al
Hakam) GN=dapF PE=1 SV=1
Length = 288
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 23 GAVSPDSFDTFHSYSNTFQMPFI----TPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDT 78
G V+ D ++P + TP+ E L + + A+SM + +D
Sbjct: 116 GKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNSHAVIFVDD 175
Query: 79 VKYYGWKNIIYMYDSHDEMFYEG-SPEFLRVFCHEKLNISVWNRN 122
V+ + + ++H EMF E + EF+ + E++N VW R
Sbjct: 176 VEQAPLTTLGPVLETH-EMFPERVNVEFIEILNEEEMNFRVWERG 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,565,910
Number of Sequences: 539616
Number of extensions: 1846201
Number of successful extensions: 4378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4312
Number of HSP's gapped (non-prelim): 67
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)