Query psy2801
Match_columns 126
No_of_seqs 112 out of 624
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:19:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qel_B Glutamate [NMDA] recept 99.7 5.2E-18 1.8E-22 134.3 8.7 104 3-113 46-159 (364)
2 4gpa_A Glutamate receptor 4; P 99.7 6.6E-18 2.3E-22 131.0 8.9 97 7-112 59-155 (389)
3 3hsy_A Glutamate receptor 2; l 99.6 5.4E-16 1.9E-20 121.8 6.3 97 7-112 50-146 (376)
4 3o21_A Glutamate receptor 3; p 99.6 8.1E-16 2.8E-20 121.8 6.5 97 7-112 59-155 (389)
5 1jdp_A NPR-C, atrial natriuret 99.6 4.3E-15 1.5E-19 118.4 8.9 105 7-112 74-183 (441)
6 3ks9_A Mglur1, metabotropic gl 99.6 4E-15 1.4E-19 121.9 8.4 95 14-112 125-223 (496)
7 3sm9_A Mglur3, metabotropic gl 99.6 6.4E-15 2.2E-19 120.2 8.1 93 16-112 115-211 (479)
8 3kg2_A Glutamate receptor 2; I 99.6 6.4E-15 2.2E-19 125.3 8.0 97 7-112 50-146 (823)
9 3saj_A Glutamate receptor 1; r 99.6 3.2E-15 1.1E-19 117.5 5.6 97 7-112 57-153 (384)
10 3h6g_A Glutamate receptor, ion 99.5 3.3E-15 1.1E-19 117.3 5.3 89 7-98 61-152 (395)
11 3qek_A NMDA glutamate receptor 99.5 6.7E-15 2.3E-19 115.3 6.4 92 7-99 54-155 (384)
12 2e4u_A Metabotropic glutamate 99.5 1.6E-14 5.6E-19 119.2 8.9 94 15-112 115-212 (555)
13 3mq4_A Mglur7, metabotropic gl 99.5 7.3E-15 2.5E-19 119.6 6.0 82 16-98 116-201 (481)
14 3om0_A Glutamate receptor, ion 99.5 3.6E-14 1.2E-18 111.5 7.1 87 7-97 60-152 (393)
15 1dp4_A Atrial natriuretic pept 99.4 4.2E-13 1.4E-17 106.2 5.2 106 9-118 68-183 (435)
16 4f11_A Gamma-aminobutyric acid 99.3 1.3E-12 4.3E-17 103.7 5.7 89 8-97 74-168 (433)
17 3i45_A Twin-arginine transloca 99.0 8.5E-11 2.9E-15 91.7 3.7 102 8-113 63-169 (387)
18 3n0w_A ABC branched chain amin 98.9 9.7E-10 3.3E-14 85.5 6.2 88 9-97 64-156 (379)
19 3i09_A Periplasmic branched-ch 98.9 1E-09 3.6E-14 85.0 5.6 88 9-97 62-154 (375)
20 3ipc_A ABC transporter, substr 98.9 1.3E-09 4.4E-14 83.6 5.1 100 8-112 60-164 (356)
21 3td9_A Branched chain amino ac 98.8 7E-09 2.4E-13 79.9 7.1 98 9-112 72-176 (366)
22 4eyg_A Twin-arginine transloca 98.8 2E-09 6.8E-14 82.8 4.0 98 9-112 63-165 (368)
23 3sg0_A Extracellular ligand-bi 98.8 7.7E-09 2.6E-13 79.7 6.5 101 9-112 80-185 (386)
24 4evq_A Putative ABC transporte 98.8 1E-08 3.4E-13 79.0 6.3 100 9-112 73-177 (375)
25 3h5l_A Putative branched-chain 98.8 6.5E-09 2.2E-13 81.9 5.1 102 8-112 73-190 (419)
26 3n0x_A Possible substrate bind 98.7 4.3E-09 1.5E-13 81.9 3.6 88 8-97 63-155 (374)
27 3lop_A Substrate binding perip 98.7 5.7E-09 1.9E-13 80.5 4.0 97 9-112 64-167 (364)
28 3hut_A Putative branched-chain 98.7 1.9E-08 6.5E-13 77.1 6.4 98 9-112 63-165 (358)
29 4f06_A Extracellular ligand-bi 98.7 1.8E-08 6.2E-13 78.5 5.8 80 15-97 70-153 (371)
30 3snr_A Extracellular ligand-bi 98.7 2.3E-08 7.7E-13 76.3 5.8 97 9-112 60-161 (362)
31 1usg_A Leucine-specific bindin 98.7 2.2E-08 7.5E-13 76.2 5.2 85 9-95 61-149 (346)
32 3lkb_A Probable branched-chain 98.6 1E-07 3.5E-12 74.1 6.4 98 9-112 66-169 (392)
33 3eaf_A ABC transporter, substr 98.5 1.1E-07 3.9E-12 74.1 6.4 95 9-112 67-168 (391)
34 4gnr_A ABC transporter substra 98.2 3.3E-06 1.1E-10 64.6 7.1 77 15-94 73-152 (353)
35 1pea_A Amidase operon; gene re 98.2 2.2E-06 7.4E-11 66.7 5.8 81 9-94 66-150 (385)
36 2h4a_A YRAM (HI1655); perplasm 98.1 2.4E-06 8.2E-11 66.7 4.6 81 14-97 53-136 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 97.6 0.00018 6.3E-09 54.9 7.8 78 15-97 56-138 (327)
38 1dbq_A Purine repressor; trans 77.3 6.9 0.00024 28.0 6.4 90 15-112 61-154 (289)
39 3c3k_A Alanine racemase; struc 70.9 25 0.00085 25.1 8.1 70 15-94 62-134 (285)
40 3brq_A HTH-type transcriptiona 70.6 7.1 0.00024 27.9 5.0 72 15-94 75-149 (296)
41 2h3h_A Sugar ABC transporter, 68.5 19 0.00064 26.2 7.0 72 15-94 55-133 (313)
42 3rot_A ABC sugar transporter, 67.0 25 0.00087 25.2 7.4 96 14-113 58-159 (297)
43 3ksm_A ABC-type sugar transpor 66.4 18 0.00062 25.4 6.4 72 15-94 56-137 (276)
44 1xxa_A ARGR, arginine represso 62.6 23 0.00079 21.5 5.5 51 64-114 19-74 (78)
45 2fep_A Catabolite control prot 61.5 39 0.0013 24.1 7.5 88 15-112 70-162 (289)
46 3sr0_A Adenylate kinase; phosp 59.5 3.8 0.00013 29.4 1.6 31 18-48 2-32 (206)
47 3umf_A Adenylate kinase; rossm 57.6 4.2 0.00014 29.6 1.5 33 16-48 29-61 (217)
48 2qu7_A Putative transcriptiona 57.3 7.3 0.00025 28.0 2.9 69 15-94 61-132 (288)
49 3k4h_A Putative transcriptiona 55.5 48 0.0017 23.4 7.1 89 15-112 67-159 (292)
50 3gbv_A Putative LACI-family tr 52.8 58 0.002 23.0 7.3 72 14-93 66-144 (304)
51 3dbi_A Sugar-binding transcrip 52.5 25 0.00086 25.8 5.3 71 15-94 117-191 (338)
52 3brs_A Periplasmic binding pro 52.4 58 0.002 22.9 7.6 72 15-94 63-141 (289)
53 3kke_A LACI family transcripti 52.2 40 0.0014 24.2 6.3 70 15-95 69-142 (303)
54 1tjy_A Sugar transport protein 52.1 31 0.0011 25.2 5.7 75 12-94 55-138 (316)
55 1qpz_A PURA, protein (purine n 52.0 41 0.0014 24.7 6.4 72 15-94 112-187 (340)
56 2h0a_A TTHA0807, transcription 51.9 44 0.0015 23.4 6.3 68 15-94 53-124 (276)
57 3fdi_A Uncharacterized protein 51.7 11 0.00039 26.5 3.0 33 14-46 4-36 (201)
58 2hsg_A Glucose-resistance amyl 51.6 67 0.0023 23.4 8.0 89 14-112 113-206 (332)
59 1b4b_A Arginine repressor; cor 51.5 25 0.00085 20.9 4.2 34 64-97 17-51 (71)
60 3clk_A Transcription regulator 51.3 25 0.00084 25.1 4.9 69 15-94 63-135 (290)
61 3uug_A Multiple sugar-binding 50.0 58 0.002 23.5 6.9 73 16-94 58-141 (330)
62 3bbl_A Regulatory protein of L 49.6 43 0.0015 23.8 6.0 70 15-94 62-135 (287)
63 2iks_A DNA-binding transcripti 48.6 34 0.0012 24.4 5.4 71 15-94 74-148 (293)
64 3m9w_A D-xylose-binding peripl 48.1 71 0.0024 22.9 7.1 91 15-113 56-152 (313)
65 3l49_A ABC sugar (ribose) tran 47.9 61 0.0021 22.8 6.6 88 16-112 60-153 (291)
66 3d8u_A PURR transcriptional re 47.4 42 0.0014 23.5 5.6 56 31-95 73-131 (275)
67 2x7x_A Sensor protein; transfe 45.6 74 0.0025 23.1 6.9 72 15-94 60-138 (325)
68 2rgy_A Transcriptional regulat 45.1 39 0.0013 24.1 5.2 70 15-94 65-138 (290)
69 1cke_A CK, MSSA, protein (cyti 42.7 13 0.00043 25.8 2.1 30 17-46 6-35 (227)
70 2fn9_A Ribose ABC transporter, 42.7 73 0.0025 22.5 6.3 71 15-93 56-140 (290)
71 2rjo_A Twin-arginine transloca 42.3 96 0.0033 22.5 7.1 77 15-94 59-146 (332)
72 2zfz_A Arginine repressor; DNA 42.1 55 0.0019 19.7 5.1 48 64-111 25-76 (79)
73 3g85_A Transcriptional regulat 41.6 89 0.0031 21.9 7.6 86 15-112 66-155 (289)
74 3egc_A Putative ribose operon 41.0 45 0.0015 23.7 4.9 71 15-95 62-136 (291)
75 3k9c_A Transcriptional regulat 40.9 94 0.0032 22.0 8.4 71 13-94 62-136 (289)
76 3d02_A Putative LACI-type tran 40.7 94 0.0032 21.9 7.5 73 15-94 59-137 (303)
77 3o74_A Fructose transport syst 40.6 26 0.0009 24.5 3.6 71 16-95 57-131 (272)
78 3ake_A Cytidylate kinase; CMP 40.4 19 0.00066 24.4 2.7 29 18-46 4-32 (208)
79 2p5m_A Arginine repressor; alp 40.2 33 0.0011 21.0 3.5 36 64-99 29-65 (83)
80 2vk2_A YTFQ, ABC transporter p 39.7 71 0.0024 22.9 5.9 74 16-94 57-138 (306)
81 3tlx_A Adenylate kinase 2; str 39.1 23 0.0008 25.4 3.1 39 9-47 22-60 (243)
82 2o20_A Catabolite control prot 38.6 85 0.0029 22.8 6.3 71 15-94 117-190 (332)
83 3cs3_A Sugar-binding transcrip 37.5 1E+02 0.0036 21.5 6.7 55 31-94 71-128 (277)
84 3hcw_A Maltose operon transcri 36.3 1E+02 0.0035 21.9 6.3 54 36-95 86-142 (295)
85 3v4g_A Arginine repressor; vib 35.8 56 0.0019 23.2 4.6 48 65-112 122-174 (180)
86 3g1w_A Sugar ABC transporter; 34.4 1.2E+02 0.0042 21.4 7.7 70 16-93 60-136 (305)
87 3gyb_A Transcriptional regulat 34.3 43 0.0015 23.6 3.9 49 40-95 78-129 (280)
88 4e22_A Cytidylate kinase; P-lo 34.3 31 0.0011 24.8 3.1 30 17-46 28-57 (252)
89 3l6u_A ABC-type sugar transpor 34.1 82 0.0028 22.2 5.4 57 31-95 80-146 (293)
90 1zuh_A Shikimate kinase; alpha 33.1 29 0.00098 22.8 2.6 32 16-47 7-38 (168)
91 2h92_A Cytidylate kinase; ross 33.1 34 0.0012 23.5 3.1 31 17-47 4-34 (219)
92 1jjv_A Dephospho-COA kinase; P 32.1 52 0.0018 22.3 3.9 28 18-46 4-31 (206)
93 3tb6_A Arabinose metabolism tr 31.7 1.3E+02 0.0045 21.0 7.1 56 31-95 90-148 (298)
94 1kag_A SKI, shikimate kinase I 31.5 35 0.0012 22.4 2.8 30 17-46 5-34 (173)
95 3exa_A TRNA delta(2)-isopenten 31.4 28 0.00097 27.0 2.6 32 15-46 2-33 (322)
96 3gv0_A Transcriptional regulat 31.2 1.4E+02 0.0047 21.0 6.3 68 37-112 85-155 (288)
97 3gmt_A Adenylate kinase; ssgci 30.6 27 0.00093 25.6 2.3 31 18-48 10-40 (230)
98 1tev_A UMP-CMP kinase; ploop, 30.3 26 0.00089 23.3 2.0 31 17-47 4-34 (196)
99 3huu_A Transcription regulator 30.0 1.5E+02 0.0051 21.1 6.7 88 15-112 81-172 (305)
100 3vaa_A Shikimate kinase, SK; s 29.9 38 0.0013 23.1 2.9 31 17-47 26-56 (199)
101 3e61_A Putative transcriptiona 29.6 93 0.0032 21.7 5.0 55 31-95 76-133 (277)
102 3kb2_A SPBC2 prophage-derived 29.4 33 0.0011 22.3 2.4 30 18-47 3-32 (173)
103 1knq_A Gluconate kinase; ALFA/ 29.3 27 0.00092 23.1 1.9 32 15-46 7-38 (175)
104 3dl0_A Adenylate kinase; phosp 28.8 44 0.0015 22.9 3.1 29 19-47 3-31 (216)
105 3o1i_D Periplasmic protein TOR 28.7 1.3E+02 0.0043 21.2 5.6 75 16-94 62-146 (304)
106 2qt1_A Nicotinamide riboside k 28.3 42 0.0014 22.9 2.8 29 18-46 23-52 (207)
107 2iyv_A Shikimate kinase, SK; t 27.8 37 0.0013 22.6 2.4 30 18-47 4-33 (184)
108 3ctp_A Periplasmic binding pro 27.5 81 0.0028 22.9 4.5 50 37-95 131-183 (330)
109 1via_A Shikimate kinase; struc 27.4 33 0.0011 22.7 2.1 30 18-47 6-35 (175)
110 4eun_A Thermoresistant glucoki 27.2 39 0.0013 23.1 2.5 30 17-46 30-59 (200)
111 1ukz_A Uridylate kinase; trans 27.1 43 0.0015 22.7 2.7 30 18-47 17-46 (203)
112 3bil_A Probable LACI-family tr 27.0 1.4E+02 0.0047 22.0 5.7 70 16-94 121-194 (348)
113 2qh8_A Uncharacterized protein 26.5 1.5E+02 0.0053 21.1 5.9 24 72-95 126-151 (302)
114 3trf_A Shikimate kinase, SK; a 26.5 45 0.0016 22.1 2.7 31 17-47 6-36 (185)
115 2gak_A Beta-1,6-N-acetylglucos 26.2 1.2E+02 0.004 23.7 5.4 39 72-113 160-199 (391)
116 1vht_A Dephospho-COA kinase; s 25.9 61 0.0021 22.2 3.4 29 18-47 6-34 (218)
117 2if2_A Dephospho-COA kinase; a 25.6 55 0.0019 22.1 3.0 29 18-47 3-31 (204)
118 1q3t_A Cytidylate kinase; nucl 25.3 36 0.0012 24.0 2.1 30 17-46 17-46 (236)
119 3fb4_A Adenylate kinase; psych 24.9 44 0.0015 22.9 2.4 29 19-47 3-31 (216)
120 3lw7_A Adenylate kinase relate 24.2 55 0.0019 20.9 2.7 29 18-47 3-31 (179)
121 1b4a_A Arginine repressor; hel 24.0 1E+02 0.0035 20.9 4.2 34 65-98 96-130 (149)
122 2ze6_A Isopentenyl transferase 24.0 46 0.0016 24.0 2.5 31 17-47 2-32 (253)
123 3iij_A Coilin-interacting nucl 23.9 53 0.0018 21.7 2.7 33 15-47 10-42 (180)
124 3r20_A Cytidylate kinase; stru 23.6 40 0.0014 24.5 2.1 31 17-47 10-40 (233)
125 2c95_A Adenylate kinase 1; tra 23.2 45 0.0015 22.2 2.2 31 17-47 10-40 (196)
126 2jvw_A Uncharacterized protein 22.9 36 0.0012 21.5 1.4 41 71-112 17-57 (88)
127 1uf9_A TT1252 protein; P-loop, 22.8 69 0.0024 21.3 3.1 30 17-47 9-38 (203)
128 3c1r_A Glutaredoxin-1; oxidize 22.8 88 0.003 19.6 3.5 69 13-97 21-93 (118)
129 3ffy_A Putative tetrapyrrole ( 22.5 1.6E+02 0.0053 18.7 5.1 52 62-113 45-100 (115)
130 2bbw_A Adenylate kinase 4, AK4 22.4 51 0.0017 23.3 2.4 30 17-46 28-57 (246)
131 1e6c_A Shikimate kinase; phosp 22.3 54 0.0018 21.3 2.4 31 17-47 3-33 (173)
132 3hs3_A Ribose operon repressor 22.1 2.1E+02 0.007 20.0 6.0 66 37-112 81-150 (277)
133 2ioy_A Periplasmic sugar-bindi 22.1 2.1E+02 0.0071 20.0 7.1 72 15-94 55-133 (283)
134 4fe7_A Xylose operon regulator 21.9 1.8E+02 0.0063 21.9 5.7 57 34-94 90-149 (412)
135 3h8q_A Thioredoxin reductase 3 21.2 72 0.0025 19.9 2.7 69 10-95 10-79 (114)
136 3d3q_A TRNA delta(2)-isopenten 20.8 51 0.0017 25.6 2.2 30 17-46 8-37 (340)
137 3lub_A Putative creatinine ami 20.6 1.8E+02 0.0062 21.2 5.2 50 60-114 83-136 (254)
138 1kht_A Adenylate kinase; phosp 20.5 44 0.0015 22.0 1.7 31 17-47 4-39 (192)
139 3qk7_A Transcriptional regulat 20.4 2.3E+02 0.0079 19.9 7.8 52 36-95 83-137 (294)
140 2bwj_A Adenylate kinase 5; pho 20.4 49 0.0017 22.1 1.9 31 17-47 13-43 (199)
141 3a8t_A Adenylate isopentenyltr 20.4 74 0.0025 24.7 3.1 30 18-47 42-71 (339)
142 3t61_A Gluconokinase; PSI-biol 20.2 63 0.0021 21.9 2.5 30 17-46 19-48 (202)
143 1zd8_A GTP:AMP phosphotransfer 20.1 62 0.0021 22.4 2.5 31 17-47 8-38 (227)
144 3cm0_A Adenylate kinase; ATP-b 20.1 50 0.0017 21.8 1.9 30 18-47 6-35 (186)
No 1
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.74 E-value=5.2e-18 Score=134.29 Aligned_cols=104 Identities=9% Similarity=0.106 Sum_probs=80.3
Q ss_pred hhhh--HHHHhhccC-CCcEEEE-cCCCcchHHH--HHHhhCcCCCCeeeecCCCC-CCCCCCCCCCceEEeeCC---HH
Q psy2801 3 QNVF--FVSVCNQFS-RGVFSML-GAVSPDSFDT--FHSYSNTFQMPFITPWFPEK-VLAPSSGFLDYAISMRPD---YH 72 (126)
Q Consensus 3 ~~~f--~~~~C~~~~-~gv~AIi-Gp~~s~~~~~--v~si~~~~~IP~Is~~~~~~-~~~~~~~~~~f~~~~~P~---~~ 72 (126)
.|+| .+++|+++. .||.||| ||.++.++.+ ++++|+.++||+|+++++++ .+. +..+.+|++++.|+ ++
T Consensus 46 ~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~ls-d~~~~p~f~Rt~psd~~q~ 124 (364)
T 3qel_B 46 TDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMA-DKDESSMFFQFGPSIEQQA 124 (364)
T ss_dssp CSHHHHHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCS-SCCTTCCEEESSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCC-CcccCceEEEcCCChHHHH
Confidence 3667 589999986 4798876 5666555544 99999999999999988766 452 23457899999998 49
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCccccCCChHHHHHHHHhh
Q psy2801 73 QAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEK 113 (126)
Q Consensus 73 ~Ai~dli~~f~W~~v~iiY~dd~gl~~~~~l~~l~~~l~~~ 113 (126)
+|+++|++||||+||++||+|+. +++.+.+.+.+.
T Consensus 125 ~ai~~ll~~fgW~~V~iI~~d~~------g~~~~~~~l~~~ 159 (364)
T 3qel_B 125 SVMLNIMEEYDWYIFSIVTTYFP------GYQDFVNKIRST 159 (364)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCT------THHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEEEeCCc------cHHHHHHHHHHH
Confidence 99999999999999999999842 344555555543
No 2
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.73 E-value=6.6e-18 Score=131.01 Aligned_cols=97 Identities=25% Similarity=0.580 Sum_probs=82.9
Q ss_pred HHHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCHHHHHHHHHHHcCCcE
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDTVKYYGWKN 86 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~~~Ai~dli~~f~W~~ 86 (126)
.+++|+++++||.|||||.+|..+.+++++++.++||+|+++++.+ +..+|.++++|..++|+++|+++|||++
T Consensus 59 ~~~~~~l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~------~~~~~~~~~~~~~~~a~~~l~~~~~w~~ 132 (389)
T 4gpa_A 59 TNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE------GESQFVLQLRPSLRGALLSLLDHYEWNC 132 (389)
T ss_dssp HHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCS------SCCSSEEECSCCCHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccccc------ccccCCccccCCHHHHHHHHHHHcCCcE
Confidence 6789999999999999999999999999999999999999876532 3557889999998999999999999999
Q ss_pred EEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 87 IIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 87 v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
|++||+++++..+ ++.+.+.+.+
T Consensus 133 vaii~~~d~~~~~---~~~~~~~~~~ 155 (389)
T 4gpa_A 133 FVFLYDTDRGYSI---LQAIMEKAGQ 155 (389)
T ss_dssp EEEEECSTTCSHH---HHHHHHHHHT
T ss_pred EEEEEecchhhHH---HHHHHHHHHh
Confidence 9999999886543 4455555443
No 3
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.61 E-value=5.4e-16 Score=121.81 Aligned_cols=97 Identities=34% Similarity=0.677 Sum_probs=81.3
Q ss_pred HHHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCHHHHHHHHHHHcCCcE
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDTVKYYGWKN 86 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~~~Ai~dli~~f~W~~ 86 (126)
.+.+|+++++||.|||||..+..+.+++.+++..+||+|+++++. ....+|.++++|++++++++++++|||++
T Consensus 50 ~~~~~~li~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~------~~~~~~~~~~~p~~~~a~~~~~~~~gw~~ 123 (376)
T 3hsy_A 50 TNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT------DGTHPFVIQMRPDLKGALLSLIEYYQWDK 123 (376)
T ss_dssp HHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC------CSCCTTEEECSCCCHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCCC------cccCCceEEeCccHHHHHHHHHHhcCCCE
Confidence 578999998999999999999999999999999999999987742 23557899999999999999999999999
Q ss_pred EEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 87 IIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 87 v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
|++||++++|... ++.+++.+.+
T Consensus 124 vaii~d~~~g~~~---~~~~~~~~~~ 146 (376)
T 3hsy_A 124 FAYLYDSDRGLST---LQAVLDSAAE 146 (376)
T ss_dssp EEEEECSTTCSHH---HHHHHHHHHH
T ss_pred EEEEEeCchhHHH---HHHHHHHhhh
Confidence 9999965556543 4455555544
No 4
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.60 E-value=8.1e-16 Score=121.77 Aligned_cols=97 Identities=29% Similarity=0.637 Sum_probs=80.5
Q ss_pred HHHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCHHHHHHHHHHHcCCcE
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDTVKYYGWKN 86 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~~~Ai~dli~~f~W~~ 86 (126)
.+.+|++++++|.|||||.++..+.+++.+++..+||+|+++++. ....+|.++++|++++|+++++++|||++
T Consensus 59 ~~~a~~li~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~~~------~~~~~~~~~~~p~~~~a~~~~~~~~gw~~ 132 (389)
T 3o21_A 59 TNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPT------DADVQFVIQMRPALKGAILSLLSYYKWEK 132 (389)
T ss_dssp HHHHHHHHTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSCCC------SSCCSSEEECSCCSHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCCCC------ccCCceEEEEccCHHHHHHHHHHhCCCCE
Confidence 568999999999999999999999999999999999999876532 13457888999999999999999999999
Q ss_pred EEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 87 IIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 87 v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
|++||++++|... ++.+++.+.+
T Consensus 133 vaii~d~~~g~~~---~~~~~~~~~~ 155 (389)
T 3o21_A 133 FVYLYDTERGFSV---LQAIMEAAVQ 155 (389)
T ss_dssp EEEEECSTTCSHH---HHHHHHHHHH
T ss_pred EEEEEcCcHHHHH---HHHHHHHhhc
Confidence 9999966566543 4455555543
No 5
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.58 E-value=4.3e-15 Score=118.37 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=82.9
Q ss_pred HHHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCC-CCCceEEeeCC---HHHHHHHHHHHc
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSG-FLDYAISMRPD---YHQAIIDTVKYY 82 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~-~~~f~~~~~P~---~~~Ai~dli~~f 82 (126)
.+..|....++|.|||||.++..+.+++.+++.++||+|++.++++.+. ... ..+|++++.|+ +++|+++++++|
T Consensus 74 ~~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls-~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~ 152 (441)
T 1jdp_A 74 VDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQ-HKDSEYSHLTRVAPAYAKMGEMMLALFRHH 152 (441)
T ss_dssp HHHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGG-CTTTTTTTEEECSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhc-cccccCCceEEecCcHHHHHHHHHHHHHhc
Confidence 3456765566999999999999999999999999999999988776552 112 57899999997 499999999999
Q ss_pred CCcEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 83 GWKNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 83 ~W~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
||+||++||+|++ |......++.+++.+.+
T Consensus 153 ~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~ 183 (441)
T 1jdp_A 153 HWSRAALVYSDDKLERNCYFTLEGVHEVFQE 183 (441)
T ss_dssp TCCEEEEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEcCCcccchHHHHHHHHHHHHh
Confidence 9999999999875 54311144556666654
No 6
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.58 E-value=4e-15 Score=121.94 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=77.3
Q ss_pred cCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEE
Q psy2801 14 FSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 14 ~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~ii 90 (126)
.+.+|.|||||.++..+.+++.+++.++||+|++++.++.+. .....+|++++.|+ .++|+++++++|||+||++|
T Consensus 125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~ls-d~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li 203 (496)
T 3ks9_A 125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLS-DKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAV 203 (496)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGG-CTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCcccc-CccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEE
Confidence 467899999999999999999999999999999998877553 22457899999987 49999999999999999999
Q ss_pred EeCCC-ccccCCChHHHHHHHHh
Q psy2801 91 YDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 91 Y~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|+|++ |... ++.+++.+.+
T Consensus 204 ~~dd~~G~~~---~~~~~~~~~~ 223 (496)
T 3ks9_A 204 HTEGNYGESG---MDAFKELAAQ 223 (496)
T ss_dssp EESSHHHHHH---HHHHHHHHHH
T ss_pred EeccHHHHHH---HHHHHHHHHH
Confidence 99875 5533 4445555443
No 7
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=120.22 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEEEe
Q psy2801 16 RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYMYD 92 (126)
Q Consensus 16 ~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~iiY~ 92 (126)
.+|.|||||.++..+.+++.+++.++||+|++++.++.+. .....+|++++.|+ .++|+++++++|||+||++||+
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~ls-d~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~ 193 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLS-DKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 193 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGG-CTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCcccc-CcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 4799999999999999999999999999999998877653 22457899999987 4999999999999999999999
Q ss_pred CCC-ccccCCChHHHHHHHHh
Q psy2801 93 SHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 93 dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|++ |... ++.+++.+.+
T Consensus 194 dd~~G~~~---~~~~~~~~~~ 211 (479)
T 3sm9_A 194 EGDYGETG---IEAFEQEARL 211 (479)
T ss_dssp SSHHHHHH---HHHHHHHHHT
T ss_pred cchhhHHH---HHHHHHHHHH
Confidence 875 5433 4444555443
No 8
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.55 E-value=6.4e-15 Score=125.30 Aligned_cols=97 Identities=34% Similarity=0.700 Sum_probs=81.6
Q ss_pred HHHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCHHHHHHHHHHHcCCcE
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDTVKYYGWKN 86 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~~~Ai~dli~~f~W~~ 86 (126)
.+.+|++.++||.|||||.++..+.+++.+++..+||+|++..+. ....+|.++++|++++|+++++++|||++
T Consensus 50 ~~~~~~l~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~~------~~~~~~~~r~~p~~~~a~~~l~~~~gw~~ 123 (823)
T 3kg2_A 50 TNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT------DGTHPFVIQMRPDLKGALLSLIEYYQWDK 123 (823)
T ss_dssp HHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCC------SSCCSSEEECSCCCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccCC------CCCCceEEEeCCCHHHHHHHHHHHCCCCE
Confidence 467999999999999999999999999999999999999974432 23567999999999999999999999999
Q ss_pred EEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 87 IIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 87 v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
|++||+|++|. ..++.+.+.+.+
T Consensus 124 v~ii~d~~~g~---~~~~~~~~~~~~ 146 (823)
T 3kg2_A 124 FAYLYDSDRGL---STLQAVLDSAAE 146 (823)
T ss_dssp EEEEECGGGCT---HHHHHHHHHHHH
T ss_pred EEEEEeCChhH---HHHHHHHHHhhc
Confidence 99999665654 345566666654
No 9
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.55 E-value=3.2e-15 Score=117.52 Aligned_cols=97 Identities=25% Similarity=0.581 Sum_probs=80.1
Q ss_pred HHHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCHHHHHHHHHHHcCCcE
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDTVKYYGWKN 86 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~~~Ai~dli~~f~W~~ 86 (126)
.+.+|+++++||.|||||..+..+.+++.+++..+||+|+++.+. ....+|.++++|++++++++++++|||++
T Consensus 57 ~~~~~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~~------~~~~~~~~~~~p~~~~a~~~~~~~~g~~~ 130 (384)
T 3saj_A 57 TYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPV------DTSNQFVLQLRPELQEALISIIDHYKWQT 130 (384)
T ss_dssp HHHHHHHHHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCCC------SSCCTTEEECSCCCHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHhcCeEEEECCCCHHHHHHHHHHhccCCCCeEeccccC------cCccCceEEecccHHHHHHHHHHHCCCcE
Confidence 568999998999999999999999999999999999999985432 13557889999999999999999999999
Q ss_pred EEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 87 IIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 87 v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
|++||+|++|... ++.+.+.+.+
T Consensus 131 v~ii~d~~~g~~~---~~~~~~~~~~ 153 (384)
T 3saj_A 131 FVYIYDADRGLSV---LQRVLDTAAE 153 (384)
T ss_dssp EEEEECSTTCSHH---HHHHHHHHHH
T ss_pred EEEEEeCchhHHH---HHHHHHHhhh
Confidence 9999976666533 4445555443
No 10
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.55 E-value=3.3e-15 Score=117.32 Aligned_cols=89 Identities=26% Similarity=0.536 Sum_probs=77.6
Q ss_pred HHHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcC
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYG 83 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~ 83 (126)
.+.+|+++++||.|||||.++..+.+++.+++..+||+|++.+..+.+ + ++.+|++++.|+ .++++++++++||
T Consensus 61 ~~~a~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l--~-~~~~~~~r~~~~~~~~~~~~~~~~~~~g 137 (395)
T 3h6g_A 61 SKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVS--D-NKDSFYVSLYPDFSSLSRAILDLVQFFK 137 (395)
T ss_dssp HHHHHHHHHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCT--T-CCCCSEEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccc--c-ccCceEEEecCCHHHHHHHHHHHHHHCC
Confidence 568999999999999999999999999999999999999988776644 2 346789999987 4999999999999
Q ss_pred CcEEEEEEeCCCccc
Q psy2801 84 WKNIIYMYDSHDEMF 98 (126)
Q Consensus 84 W~~v~iiY~dd~gl~ 98 (126)
|++|++||++++|..
T Consensus 138 ~~~v~ii~d~~~g~~ 152 (395)
T 3h6g_A 138 WKTVTVVYDDSTGLI 152 (395)
T ss_dssp CSEEEEEESSTHHHH
T ss_pred CeEEEEEEEChhHHH
Confidence 999999997666654
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.54 E-value=6.7e-15 Score=115.34 Aligned_cols=92 Identities=12% Similarity=0.218 Sum_probs=72.3
Q ss_pred HHHHhh-ccCCCcEEEEcC-----CCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHH
Q psy2801 7 FVSVCN-QFSRGVFSMLGA-----VSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIID 77 (126)
Q Consensus 7 ~~~~C~-~~~~gv~AIiGp-----~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~d 77 (126)
.+++|+ ++++||.||||| ..+..+.+++.+++.++||+|++.+..+.+. ....++|++++.|+ .++++++
T Consensus 54 ~~~~~~~Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls-~~~~~~~~fr~~~~~~~~~~a~~~ 132 (384)
T 3qek_A 54 ALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYS-DKSIHLSFLRTVPPYSHQALVWFE 132 (384)
T ss_dssp HHHHHHHTGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGG-CSSSCTTEEESSCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhcc-CcccCCceEEecCChHHHHHHHHH
Confidence 456798 677899999994 5566778999999999999999887766442 22345789999987 4999999
Q ss_pred HHHHcCCcEEEEEEeCCC-cccc
Q psy2801 78 TVKYYGWKNIIYMYDSHD-EMFY 99 (126)
Q Consensus 78 li~~f~W~~v~iiY~dd~-gl~~ 99 (126)
++++|||++|++||+|++ |...
T Consensus 133 ~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 133 MMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp HHHHTTCCEEEEEEESSHHHHHH
T ss_pred HHHHcCCeEEEEEEEcCcccHHH
Confidence 999999999999999874 6543
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.54 E-value=1.6e-14 Score=119.23 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~iiY 91 (126)
..+|.|||||.++..+.+++.+++.++||+|++.++++.+. ...+.+|++++.|+ +++|+++++++|||+||++||
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~ls-d~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~ 193 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLS-DKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVA 193 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGG-CTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccC-CcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 56899999999999999999999999999999988877553 22356899999997 499999999999999999999
Q ss_pred eCCC-ccccCCChHHHHHHHHh
Q psy2801 92 DSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 92 ~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
+|++ |.. .++.+++.+.+
T Consensus 194 ~d~~~g~~---~~~~~~~~~~~ 212 (555)
T 2e4u_A 194 SEGDYGET---GIEAFEQEARL 212 (555)
T ss_dssp ESSTTHHH---HHHHHHHHHHT
T ss_pred eeChHHHH---HHHHHHHHHHH
Confidence 9875 543 34445555443
No 13
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.53 E-value=7.3e-15 Score=119.57 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEEEe
Q psy2801 16 RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYMYD 92 (126)
Q Consensus 16 ~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~iiY~ 92 (126)
.+|.|||||.++..+.+++.+++.++||+|++.+.++.+. .....+|++++.|+ .++|+++++++|||+||++||+
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~ls-d~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~ 194 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELS-DDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLAS 194 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGG-CTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC--
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCcccc-CcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 6899999999999999999999999999999998877653 22456899999987 4999999999999999999999
Q ss_pred CCC-ccc
Q psy2801 93 SHD-EMF 98 (126)
Q Consensus 93 dd~-gl~ 98 (126)
|++ |..
T Consensus 195 d~~~G~~ 201 (481)
T 3mq4_A 195 EGSYGEK 201 (481)
T ss_dssp -CHHHHH
T ss_pred cchhHHH
Confidence 874 553
No 14
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.49 E-value=3.6e-14 Score=111.50 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=71.2
Q ss_pred HHHHhhccCCCcEEEEcCCCcc-hHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCce--EEeeCC---HHHHHHHHHH
Q psy2801 7 FVSVCNQFSRGVFSMLGAVSPD-SFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYA--ISMRPD---YHQAIIDTVK 80 (126)
Q Consensus 7 ~~~~C~~~~~gv~AIiGp~~s~-~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~--~~~~P~---~~~Ai~dli~ 80 (126)
.+..|++.++||.|||||.++. ++.+++.+++..+||+|+++++.. +. ...+++ +++.|+ .+++++++++
T Consensus 60 ~~~~~~l~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~---~~-~~~~~~~~fr~~p~~~~~~~~~~~~~~ 135 (393)
T 3om0_A 60 TDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEET---PR-LQYLRFASVSLYPSNEDVSLAVSRILK 135 (393)
T ss_dssp HHHHHHHGGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCC---C-----CCSCCEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcC---cc-ccccccceEEecCCHHHHHHHHHHHHH
Confidence 4678998888999999999994 557999999999999999877632 12 234555 899987 4999999999
Q ss_pred HcCCcEEEEEEeCCCcc
Q psy2801 81 YYGWKNIIYMYDSHDEM 97 (126)
Q Consensus 81 ~f~W~~v~iiY~dd~gl 97 (126)
+|||++|++||+|+++.
T Consensus 136 ~~g~~~vaii~~~~~~g 152 (393)
T 3om0_A 136 SFNYPSASLICAKAECL 152 (393)
T ss_dssp HTTSCCEEEEESSTTHH
T ss_pred hCCCcEEEEEEeCchHH
Confidence 99999999999988743
No 15
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.37 E-value=4.2e-13 Score=106.19 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=80.3
Q ss_pred HHhhcc-CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQF-SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~-~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.+++++ .++|.|||||..+..+.+++.+++..+||+|++.++++.+. .....+|++++.|+ .++++++++++|||
T Consensus 68 ~a~~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls-~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w 146 (435)
T 1dp4_A 68 AAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIG-VKDEYALTTRTGPSHVKLGDFVTALHRRLGW 146 (435)
T ss_dssp HHHHHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGG-CTTTSTTEEECSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccC-cccccCeEEEecCcHHHHHHHHHHHHHHCCC
Confidence 444444 46899999999999999999999999999999888766442 22346899999987 48999999999999
Q ss_pred cEEEEE------EeCCCccccCCChHHHHHHHHhhcCccc
Q psy2801 85 KNIIYM------YDSHDEMFYEGSPEFLRVFCHEKLNISV 118 (126)
Q Consensus 85 ~~v~ii------Y~dd~gl~~~~~l~~l~~~l~~~~~~~~ 118 (126)
++|++| |++++ .+ ..++.+++.+.++....|
T Consensus 147 ~~v~ii~~~d~~~~~~~--~g-~~~~~~~~~~~~~~g~~v 183 (435)
T 1dp4_A 147 EHQALVLYADRLGDDRP--CF-FIVEGLYMRVRERLNITV 183 (435)
T ss_dssp CSEEEEEEECCSSSCCH--HH-HHHHHHHHHHHHHHCCEE
T ss_pred cEEEEEEEccCCCCcch--HH-HHHHHHHHHHHhhcCeEE
Confidence 999999 33332 12 355667777766444433
No 16
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.32 E-value=1.3e-12 Score=103.66 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=74.8
Q ss_pred HHHhhccC--CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHc
Q psy2801 8 VSVCNQFS--RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYY 82 (126)
Q Consensus 8 ~~~C~~~~--~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f 82 (126)
..+++++. .+|.|||||..+..+.+++.+++..+||+|++.+..+.+. .....+|++++.|+ .++++++++++|
T Consensus 74 ~~a~~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~-~~~~~~~~fr~~~~~~~~~~~~~~~~~~~ 152 (433)
T 4f11_A 74 KAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLA-DKKKYPYFFRTVPSDNAVNPAILKLLKHY 152 (433)
T ss_dssp HHHHHHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGG-CTTTCTTEEESSCCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCcccc-ccccCCceEEecCchHHHHHHHHHHHHHc
Confidence 45666665 3899999999999999999999999999999887766442 22346899999987 499999999999
Q ss_pred CCcEEEEEEeCCC-cc
Q psy2801 83 GWKNIIYMYDSHD-EM 97 (126)
Q Consensus 83 ~W~~v~iiY~dd~-gl 97 (126)
||++|++||+|++ |.
T Consensus 153 g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 153 QWKRVGTLTQDVQRFS 168 (433)
T ss_dssp TCCEEEEEEESSHHHH
T ss_pred CCcEEEEEEecchhhH
Confidence 9999999999875 54
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.05 E-value=8.5e-11 Score=91.69 Aligned_cols=102 Identities=8% Similarity=0.034 Sum_probs=78.0
Q ss_pred HHHhhccC-CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcC
Q psy2801 8 VSVCNQFS-RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYG 83 (126)
Q Consensus 8 ~~~C~~~~-~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~ 83 (126)
..+++++. ++|.|||||.++..+.+++.+++..+||+|++.+..+.+. .....+|.+++.|+ .++++++++.++|
T Consensus 63 ~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~-~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g 141 (387)
T 3i45_A 63 TAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALT-WEKGNRYTYRLRPSTYMQAAMLAAEAAKLP 141 (387)
T ss_dssp HHHHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGT-TTTCCTTEEECSCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhh-hccCCCCEEEeCCChHHHHHHHHHHHHHcC
Confidence 34556666 4999999999999999999999999999999876554331 12356789999998 3999999999999
Q ss_pred CcEEEEEEeCCC-ccccCCChHHHHHHHHhh
Q psy2801 84 WKNIIYMYDSHD-EMFYEGSPEFLRVFCHEK 113 (126)
Q Consensus 84 W~~v~iiY~dd~-gl~~~~~l~~l~~~l~~~ 113 (126)
|+++++||++++ |... .+.++..+.+.
T Consensus 142 ~~~vaii~~~~~~g~~~---~~~~~~~l~~~ 169 (387)
T 3i45_A 142 ITRWATIAPNYEYGQSA---VARFKELLLAA 169 (387)
T ss_dssp CCEEEEECCSSHHHHHH---HHHHHHHHHHH
T ss_pred CCeEEEEeCCchHhHHH---HHHHHHHHHHh
Confidence 999999997664 4433 34455555543
No 18
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=98.95 E-value=9.7e-10 Score=85.46 Aligned_cols=88 Identities=10% Similarity=0.102 Sum_probs=71.0
Q ss_pred HHhhccC-CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQFS-RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~~-~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.++++.. ++|.+||||.++..+.+++.++...+||+|++.+..+.+. .....++.+++.|+ .++++++.+.++||
T Consensus 64 ~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~ 142 (379)
T 3n0w_A 64 IAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIG-GTECNGYGIGFLYNFTSIVKTVVQAQLAKGY 142 (379)
T ss_dssp HHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTT-TTTCCSSEEECSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhh-cccCCCcEEEEeCChHHHHHHHHHHHHHcCC
Confidence 3455555 7999999999999999999999999999999876554331 11236788999987 38999999999999
Q ss_pred cEEEEEEeCCC-cc
Q psy2801 85 KNIIYMYDSHD-EM 97 (126)
Q Consensus 85 ~~v~iiY~dd~-gl 97 (126)
+++++||++++ |.
T Consensus 143 ~~vaii~~~~~~g~ 156 (379)
T 3n0w_A 143 KTWFLMLPDAAYGD 156 (379)
T ss_dssp CEEEEEEESSHHHH
T ss_pred cEEEEEecccchhH
Confidence 99999998774 54
No 19
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=98.92 E-value=1e-09 Score=85.00 Aligned_cols=88 Identities=10% Similarity=0.085 Sum_probs=71.3
Q ss_pred HHhhccC-CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQFS-RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~~-~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.+++++. ++|.+||||.++..+.++..++...+||+|++.+..+.+. .....++.+++.|+ .++++++.+.++||
T Consensus 62 ~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~ 140 (375)
T 3i09_A 62 KAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLT-NEQCTPYTVHYAYDTMALAKGTGSAVVKQGG 140 (375)
T ss_dssp HHHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGG-TTTCCTTEEECSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhh-cccCCCcEEEeeCChHHHHHHHHHHHHHcCC
Confidence 4555565 7999999999999999999999999999999876554331 11245788999987 38899999999999
Q ss_pred cEEEEEEeCCC-cc
Q psy2801 85 KNIIYMYDSHD-EM 97 (126)
Q Consensus 85 ~~v~iiY~dd~-gl 97 (126)
+++++||++++ |.
T Consensus 141 ~~vaii~~~~~~g~ 154 (375)
T 3i09_A 141 KTWFFLTADYAFGK 154 (375)
T ss_dssp CEEEEEEESSHHHH
T ss_pred ceEEEEecccHHHH
Confidence 99999998774 54
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=98.89 E-value=1.3e-09 Score=83.64 Aligned_cols=100 Identities=9% Similarity=-0.077 Sum_probs=74.4
Q ss_pred HHHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHH-HHHHcC
Q psy2801 8 VSVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIID-TVKYYG 83 (126)
Q Consensus 8 ~~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~d-li~~f~ 83 (126)
..++++.+++|.+||||..+..+..+..++...+||+|++....+.+ .....++.+++.|+ .++++++ ++++||
T Consensus 60 ~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 137 (356)
T 3ipc_A 60 SVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVF--TERGLWNTFRTCGRDDQQGGIAGKYLADHFK 137 (356)
T ss_dssp HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGG--GSSCCTTEEESSCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHh--hcCCCCcEEEecCChHHHHHHHHHHHHHhcC
Confidence 34556667899999999999999999999999999999877665433 12234788999987 3888888 566789
Q ss_pred CcEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 84 WKNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 84 W~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
||++++||++++ |..+ .+.+++.+.+
T Consensus 138 ~~~iaii~~~~~~~~~~---~~~~~~~l~~ 164 (356)
T 3ipc_A 138 DAKVAIIHDKTPYGQGL---ADETKKAANA 164 (356)
T ss_dssp TCCEEEEECSSHHHHHH---HHHHHHHHHH
T ss_pred CCEEEEEeCCChHHHHH---HHHHHHHHHH
Confidence 999999998653 4332 3344444444
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=98.83 E-value=7e-09 Score=79.94 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=73.4
Q ss_pred HHhhccCC-CcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHH-HHcC
Q psy2801 9 SVCNQFSR-GVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTV-KYYG 83 (126)
Q Consensus 9 ~~C~~~~~-gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli-~~f~ 83 (126)
.++++..+ +|.+||||.++..+..+..++...+||+|++....+.+ . ...++.+++.|+ .++++++.+ +++|
T Consensus 72 ~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~--~-~~~~~~f~~~~~~~~~~~~~~~~l~~~~g 148 (366)
T 3td9_A 72 AAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLV--T-QGRKFVSRVCFIDPFQGAAMAVFAYKNLG 148 (366)
T ss_dssp HHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGG--T-TTCSSEEESSCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccc--c-CCCCCEEEEeCCcHHHHHHHHHHHHHhcC
Confidence 45556555 59999999999999999999999999999987665432 1 245788999987 388899988 5689
Q ss_pred CcEEEEEEeCCC--ccccCCChHHHHHHHHh
Q psy2801 84 WKNIIYMYDSHD--EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 84 W~~v~iiY~dd~--gl~~~~~l~~l~~~l~~ 112 (126)
|+++++||+.++ |... .+.++..+.+
T Consensus 149 ~~~iaii~~~~~~~~~~~---~~~~~~~~~~ 176 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGL---SNFFINKFTE 176 (366)
T ss_dssp CCEEEEEEETTCHHHHHH---HHHHHHHHHH
T ss_pred CcEEEEEEeCCCcHHHHH---HHHHHHHHHH
Confidence 999999997432 4322 3455555544
No 22
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=98.83 E-value=2e-09 Score=82.79 Aligned_cols=98 Identities=10% Similarity=-0.046 Sum_probs=74.2
Q ss_pred HHhhccC-CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQFS-RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~~-~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.+.++.. ++|.+||||..+..+..+..++...+||+|++....+.+ . ...++.+++.|+ .++++++++.++||
T Consensus 63 ~~~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 139 (368)
T 4eyg_A 63 LAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSII--T-ERSPYIVRTSFTLAQSSIIIGDWAAKNGI 139 (368)
T ss_dssp HHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGG--G-GGCTTEEESSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhh--c-cCCCCEEEecCChHHHHHHHHHHHHHcCC
Confidence 3445554 799999999999999999999999999999987654422 1 225788999987 38899999999999
Q ss_pred cEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 85 KNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 85 ~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
+++++||++++ |..+ .+.+++.+.+
T Consensus 140 ~~ia~i~~~~~~g~~~---~~~~~~~l~~ 165 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDA---LAFFKERFTA 165 (368)
T ss_dssp CEEEEEEESSHHHHHH---HHHHHHHHHH
T ss_pred CEEEEEecCchHhHHH---HHHHHHHHHH
Confidence 99999998764 4433 3344444443
No 23
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=98.80 E-value=7.7e-09 Score=79.68 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=75.6
Q ss_pred HHhhccCC-CcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQFSR-GVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~~~-gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.+.++.++ +|.+||||..+..+..+..++...+||+|++....+.+.+.....++.+++.|+ .++++++.+..+||
T Consensus 80 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 159 (386)
T 3sg0_A 80 NARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGA 159 (386)
T ss_dssp HHHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCC
Confidence 45556655 899999999999999999999999999999876554221102356788999988 38999999999999
Q ss_pred cEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 85 KNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 85 ~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|++++||++++ |..+ .+.+++.+.+
T Consensus 160 ~~ia~i~~~~~~~~~~---~~~~~~~l~~ 185 (386)
T 3sg0_A 160 KKVGYIGFSDAYGEGY---YKVLAAAAPK 185 (386)
T ss_dssp CEEEEEEESSHHHHHH---HHHHHHHHHH
T ss_pred CEEEEEecCchHHHHH---HHHHHHHHHH
Confidence 99999998764 4433 3344444443
No 24
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=98.77 E-value=1e-08 Score=79.02 Aligned_cols=100 Identities=9% Similarity=-0.031 Sum_probs=75.2
Q ss_pred HHhhccCC-CcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQFSR-GVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~~~-gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.+.+++.+ +|.+||||..+..+..+..++...+||+|++....+.+. .....++.+++.|+ .++++++.+..+||
T Consensus 73 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 151 (375)
T 4evq_A 73 LTTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIIT-RAMCAPNVFRTSFANGQIGRATGDAMIKAGL 151 (375)
T ss_dssp HHHCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGG-TTTCCTTEEESSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhc-ccCCCCCEEEeeCChHhHHHHHHHHHHHcCC
Confidence 45566664 999999999998999999999999999998876654331 11235788999987 38899999999999
Q ss_pred cEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 85 KNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 85 ~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|++++||++++ |..+ .+.+++.+.+
T Consensus 152 ~~ia~i~~~~~~~~~~---~~~~~~~l~~ 177 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEM---VSGFKKSFTA 177 (375)
T ss_dssp CEEEEEEESSHHHHHH---HHHHHHHHHH
T ss_pred cEEEEEecCchHHHHH---HHHHHHHHHH
Confidence 99999998764 4433 3344444443
No 25
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=98.76 E-value=6.5e-09 Score=81.88 Aligned_cols=102 Identities=8% Similarity=-0.037 Sum_probs=74.2
Q ss_pred HHHhhccC-CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCC---CCCCCCCCceEEeeCC---HHHHHHHHHH
Q psy2801 8 VSVCNQFS-RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVL---APSSGFLDYAISMRPD---YHQAIIDTVK 80 (126)
Q Consensus 8 ~~~C~~~~-~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~---~~~~~~~~f~~~~~P~---~~~Ai~dli~ 80 (126)
..++++.. +||.|||||..+..+.+++.++...+||+|++....... ......+++.+++.|+ .+++++++++
T Consensus 73 ~~a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~ 152 (419)
T 3h5l_A 73 QSAQRLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLK 152 (419)
T ss_dssp HHHHHHHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHH
Confidence 34556665 799999999999999999999999999999865432100 0011345778999987 4899999999
Q ss_pred Hc--------CCcEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 81 YY--------GWKNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 81 ~f--------~W~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
++ ||++|++||++++ |.. ..+.+++.+.+
T Consensus 153 ~~~~~~~~~~~~~~vail~~~~~~g~~---~~~~~~~~~~~ 190 (419)
T 3h5l_A 153 DIEDNGEFSRPNNKIAIITGPGIYSVN---IANAIRDGAGE 190 (419)
T ss_dssp HHHHTTSCCCSSSEEEEEECSSHHHHH---HHHHHHHHGGG
T ss_pred HHHhhccccCCCCEEEEEEcCcchhHH---HHHHHHHHHHH
Confidence 87 9999999999764 542 23344444443
No 26
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=98.75 E-value=4.3e-09 Score=81.91 Aligned_cols=88 Identities=8% Similarity=0.009 Sum_probs=68.7
Q ss_pred HHHhhccC-CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcC
Q psy2801 8 VSVCNQFS-RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYG 83 (126)
Q Consensus 8 ~~~C~~~~-~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~ 83 (126)
..+++++. +||.|||||.++..+.+++.+++..+||+|++.+..+.+. .....+|.+++.|+ ...+++.++++++
T Consensus 63 ~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~-~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~ 141 (374)
T 3n0x_A 63 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQIT-GEKWNRYIFRTGRNSSQDAISNAVAIGKQG 141 (374)
T ss_dssp HHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGG-TTTCCTTEEECSCCHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhh-cCCCCCeEEEccCCchhHHHHHHHHHhccC
Confidence 34566665 5899999999999999999999999999998655444331 12235789999887 3788888899999
Q ss_pred CcEEEEEEeCCC-cc
Q psy2801 84 WKNIIYMYDSHD-EM 97 (126)
Q Consensus 84 W~~v~iiY~dd~-gl 97 (126)
| ++++||+|++ |.
T Consensus 142 ~-~v~ii~~~~~~g~ 155 (374)
T 3n0x_A 142 V-TIATLAQDYAFGR 155 (374)
T ss_dssp E-EEEEEEESSHHHH
T ss_pred C-EEEEEeCCchHHH
Confidence 9 7999998764 54
No 27
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=98.74 E-value=5.7e-09 Score=80.55 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=74.1
Q ss_pred HHhhccC-CCcEEEEcCCCcchHHHHHH--hhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHc
Q psy2801 9 SVCNQFS-RGVFSMLGAVSPDSFDTFHS--YSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYY 82 (126)
Q Consensus 9 ~~C~~~~-~gv~AIiGp~~s~~~~~v~s--i~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f 82 (126)
.+.++.. .+|.+||||..+..+..+.. ++...+||+|++....+.+ . . .++.+++.|+ .++++++.+..+
T Consensus 64 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~--~-~-~~~~f~~~~~~~~~~~~~~~~l~~~ 139 (364)
T 3lop_A 64 NVRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSM--T-T-DPLVFPIKASYQQEIDKMITALVTI 139 (364)
T ss_dssp HHHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGG--G-S-CTTEECCSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhh--c-c-CCcEEEeCCChHHHHHHHHHHHHHc
Confidence 3445555 49999999999999999999 9999999999877654422 1 1 5788899987 388999999999
Q ss_pred CCcEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 83 GWKNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 83 ~W~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|||++++||++++ |..+ .+.+++.+.+
T Consensus 140 g~~~iaii~~~~~~g~~~---~~~~~~~~~~ 167 (364)
T 3lop_A 140 GVTRIGVLYQEDALGKEA---ITGVERTLKA 167 (364)
T ss_dssp TCCCEEEEEETTHHHHHH---HHHHHHHHHT
T ss_pred CCceEEEEEeCchhhHHH---HHHHHHHHHH
Confidence 9999999999764 4433 3445555544
No 28
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=98.72 E-value=1.9e-08 Score=77.12 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=74.1
Q ss_pred HHhhcc-CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQF-SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~-~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.+.++. .++|.+||||..+..+..+..++...+||+|++....+.+ .. ..++.+++.|+ .++++++.+...||
T Consensus 63 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 139 (358)
T 3hut_A 63 IARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDY--IK-ISPWQFRAITTPAFEGPNNAAWMIGDGF 139 (358)
T ss_dssp HHHHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGG--TT-SCTTEEESSCCGGGHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCccc--cc-CCCeEEEecCChHHHHHHHHHHHHHcCC
Confidence 455666 7899999999999889999999999999999877655422 11 22788999987 48999999888899
Q ss_pred cEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 85 KNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 85 ~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|++++||++++ |..+ .+.+++.+.+
T Consensus 140 ~~ia~i~~~~~~~~~~---~~~~~~~l~~ 165 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSS---AQAFRKAFEL 165 (358)
T ss_dssp CEEEEEEESSHHHHHH---HHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHH---HHHHHHHHHH
Confidence 99999997664 4433 3344444443
No 29
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=98.70 E-value=1.8e-08 Score=78.50 Aligned_cols=80 Identities=8% Similarity=0.010 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~iiY 91 (126)
.++|.+||||..|..+.++..++...+||+|++....+.+ . ...+|.+++.|+ ...+++++++.++|+++++||
T Consensus 70 ~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~--~-~~~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~ 146 (371)
T 4f06_A 70 KEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSI--T-EKSPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAV 146 (371)
T ss_dssp TSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGG--G-GGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEecccccchHHHHHHHHhhcCCccccccccchh--c-ccCCcceecccchhhhhhhhhhhhhhcCceEEEEEc
Confidence 4689999999999999999999999999999987765533 1 234788998887 388999999999999999999
Q ss_pred eCCC-cc
Q psy2801 92 DSHD-EM 97 (126)
Q Consensus 92 ~dd~-gl 97 (126)
+|++ |.
T Consensus 147 ~~~~~g~ 153 (371)
T 4f06_A 147 SDYGPGI 153 (371)
T ss_dssp ESSHHHH
T ss_pred CCcccch
Confidence 9874 54
No 30
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=98.68 E-value=2.3e-08 Score=76.25 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=73.7
Q ss_pred HHhhccCC-CcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQFSR-GVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~~~-gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.+.+++.+ +|.+||||..+..+..+..++...+||+|++... +. .....++.+++.|+ .++++++.+..+||
T Consensus 60 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 135 (362)
T 3snr_A 60 NARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-PI---TPERAKWSVVMPQPIPIMGKVLYEHMKKNNV 135 (362)
T ss_dssp HHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-CC---CTTTTTTEEECSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-cc---ccCCCCcEEecCCChHHHHHHHHHHHHhcCC
Confidence 34555565 8999999999988889999999999999987765 31 12345788899987 38999999999999
Q ss_pred cEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 85 KNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 85 ~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|++++||++++ |..+ .+.+++.+.+
T Consensus 136 ~~ia~i~~~~~~~~~~---~~~~~~~l~~ 161 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLW---FNDLKKQGEA 161 (362)
T ss_dssp CEEEEEEESSHHHHHH---HHHHHHHHHH
T ss_pred CEEEEEecCchHHHHH---HHHHHHHHHH
Confidence 99999998764 4433 3344444544
No 31
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=98.66 E-value=2.2e-08 Score=76.17 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=65.2
Q ss_pred HHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHH-HHcCC
Q psy2801 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTV-KYYGW 84 (126)
Q Consensus 9 ~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli-~~f~W 84 (126)
.+.++.+++|.+||||..+..+..+..++...+||+|++....+.+ .....++.+++.|+ .++++++.+ +++||
T Consensus 61 ~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 138 (346)
T 1usg_A 61 VANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPEL--TQRGYQHIMRTAGLDSSQGPTAAKYILETVKP 138 (346)
T ss_dssp HHHHHHHTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGG--GSSCCSSEEECSCCGGGHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHH--hcCCCCcEEeccCChHHHHHHHHHHHHHhcCC
Confidence 3445556799999999988888888899999999999876654322 11124677888886 388888887 56899
Q ss_pred cEEEEEEeCCC
Q psy2801 85 KNIIYMYDSHD 95 (126)
Q Consensus 85 ~~v~iiY~dd~ 95 (126)
+++++||++++
T Consensus 139 ~~i~~i~~~~~ 149 (346)
T 1usg_A 139 QRIAIIHDKQQ 149 (346)
T ss_dssp SSEEEEECSSH
T ss_pred CeEEEEECCCc
Confidence 99999998653
No 32
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=98.56 E-value=1e-07 Score=74.12 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=70.3
Q ss_pred HHhhccCC-CcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHH-cC
Q psy2801 9 SVCNQFSR-GVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKY-YG 83 (126)
Q Consensus 9 ~~C~~~~~-gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~-f~ 83 (126)
.++++..+ +|.+||| .++..+..+..++...+||+|++....+.. .....++.+++.|+ .++++++.+.. +|
T Consensus 66 ~~~~li~~~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g 142 (392)
T 3lkb_A 66 FFEEAVDRFKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIELI--DPPNNDYIFLPTTSYSEQVVALLEYIAREKK 142 (392)
T ss_dssp HHHHHHHTTCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGGGG--SSSSCTTBCEEECCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChhhc--cCCCCCceEecCCChHHHHHHHHHHHHHhCC
Confidence 45556665 8999999 567778888999999999999876644321 11245678888887 38888888776 79
Q ss_pred CcEEEEEEeCCC-ccccCCChHHHHHHHHh
Q psy2801 84 WKNIIYMYDSHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 84 W~~v~iiY~dd~-gl~~~~~l~~l~~~l~~ 112 (126)
||++++||++++ |.. -.+.+++.+.+
T Consensus 143 ~~~iaii~~~~~~g~~---~~~~~~~~l~~ 169 (392)
T 3lkb_A 143 GAKVALVVHPSPFGRA---PVEDARKAARE 169 (392)
T ss_dssp TCEEEEEECSSHHHHT---THHHHHHHHHH
T ss_pred CCEEEEEEeCCchhhh---HHHHHHHHHHH
Confidence 999999998754 433 34455555544
No 33
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=98.55 E-value=1.1e-07 Score=74.09 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHhhcc-CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHH-cC
Q psy2801 9 SVCNQF-SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKY-YG 83 (126)
Q Consensus 9 ~~C~~~-~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~-f~ 83 (126)
.+.++. .++|.+||| ..+..+..+..++...+||+|++....+ . . ..++.+++.|+ .+.++++.+.. ||
T Consensus 67 ~~~~li~~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~--~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g 140 (391)
T 3eaf_A 67 YYREFRDRYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-L--L--VKPFNFYPAPDYSTQACSGLAFLASEFG 140 (391)
T ss_dssp HHHHHHHTTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-G--T--TSTTEECSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-h--c--CCCcEEEeCCCHHHHHHHHHHHHHHhcC
Confidence 345566 679999999 5777888899999999999998766543 1 1 45688888887 38888888877 79
Q ss_pred CcEEEEEEe-CCC-ccccCCChHHHHHHHHh
Q psy2801 84 WKNIIYMYD-SHD-EMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 84 W~~v~iiY~-dd~-gl~~~~~l~~l~~~l~~ 112 (126)
|+++++||+ +++ |.. -.+.+++.+.+
T Consensus 141 ~~~iaii~~~~~~~g~~---~~~~~~~~l~~ 168 (391)
T 3eaf_A 141 QGKLALAYDSKVAYSRS---PIGAIKKAAPS 168 (391)
T ss_dssp SEEEEEEECTTCHHHHT---THHHHHHHTGG
T ss_pred CCEEEEEEecCChhHHH---HHHHHHHHHHH
Confidence 999999999 543 433 34445555543
No 34
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=98.20 E-value=3.3e-06 Score=64.61 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=59.3
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~iiY 91 (126)
..++.+|+||..+..+.++..++...+||+|++....+.+ . ....|.+++.|+ ..+++++++...+|++.++++
T Consensus 73 ~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l--~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (353)
T 4gnr_A 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGL--T-KGQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLY 149 (353)
T ss_dssp TSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTT--T-TTCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred hCCceEEeccccCcccceehhhhhccCcceEeeccccccc--c-cCCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3468999999999999999999999999999987766533 2 345678888876 388999998876555555555
Q ss_pred eCC
Q psy2801 92 DSH 94 (126)
Q Consensus 92 ~dd 94 (126)
.++
T Consensus 150 ~~~ 152 (353)
T 4gnr_A 150 TDN 152 (353)
T ss_dssp EET
T ss_pred EcC
Confidence 443
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=98.18 E-value=2.2e-06 Score=66.65 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=63.2
Q ss_pred HHhhccC-CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCC
Q psy2801 9 SVCNQFS-RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGW 84 (126)
Q Consensus 9 ~~C~~~~-~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W 84 (126)
.++++.. ++|.+|||+..+..+..+..++...+||+|++..... . ...++.+++.|+ .++++++.+...+|
T Consensus 66 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~----~-~~~~~~~~v~~~~~~~~~~~~~~l~~~g~ 140 (385)
T 1pea_A 66 CAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG----F-EYSPNIVYGGPAPNQNSAPLAAYLIRHYG 140 (385)
T ss_dssp HHHHHHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCC----C-CCCTTEEECSCCGGGTHHHHHHHHHTTTC
T ss_pred HHHHHHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccC----c-cCCCCEEEecCChHHhHHHHHHHHHHccC
Confidence 3455664 7999999998887778888899999999998765321 1 123567788876 38899999999999
Q ss_pred cEEEEEEeCC
Q psy2801 85 KNIIYMYDSH 94 (126)
Q Consensus 85 ~~v~iiY~dd 94 (126)
|++++|++++
T Consensus 141 ~~ia~i~~~~ 150 (385)
T 1pea_A 141 ERVVFIGSDY 150 (385)
T ss_dssp SEEEEEEESS
T ss_pred cEEEEEeCCC
Confidence 9999999864
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=98.10 E-value=2.4e-06 Score=66.68 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=64.5
Q ss_pred cCCCcEEEEcCCCcchHHHHHHhh-CcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC-HHHHHHHHHHHcCCcEEEEEE
Q psy2801 14 FSRGVFSMLGAVSPDSFDTFHSYS-NTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD-YHQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 14 ~~~gv~AIiGp~~s~~~~~v~si~-~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~-~~~Ai~dli~~f~W~~v~iiY 91 (126)
.++||.+||||..+..+.++..+. ...+||+|++..+... ......|.+++.|. .++++++.+...|.|++++||
T Consensus 53 ~~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~---~~~~~~~~f~~~~~~~~~~~a~~a~~~g~k~vail~ 129 (325)
T 2h4a_A 53 KQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAM 129 (325)
T ss_dssp HHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccc---cCCCCeEEEECCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 367999999999999999999998 7799999987765431 11234577777775 589999999889999999999
Q ss_pred eCCC-cc
Q psy2801 92 DSHD-EM 97 (126)
Q Consensus 92 ~dd~-gl 97 (126)
.+++ |.
T Consensus 130 ~~~~yG~ 136 (325)
T 2h4a_A 130 PQNDLGQ 136 (325)
T ss_dssp ESSHHHH
T ss_pred cCCcHHH
Confidence 9764 44
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=97.63 E-value=0.00018 Score=54.88 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCCcchHHHHHH-hhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHS-YSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~s-i~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~ii 90 (126)
.+||.+||||..+..+.++.. +.....+|.++...++. . ...++.+++.+. .++++++.+...|+|+++++
T Consensus 56 ~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii 130 (327)
T 3ckm_A 56 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN----S-RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVA 130 (327)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTT----C-CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred HcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcc----c-ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEE
Confidence 569999999998877666554 55566777776544432 1 123455666654 49999999999999999999
Q ss_pred EeCCC-cc
Q psy2801 91 YDSHD-EM 97 (126)
Q Consensus 91 Y~dd~-gl 97 (126)
|++++ |.
T Consensus 131 ~~~~~yg~ 138 (327)
T 3ckm_A 131 MPQNDLGQ 138 (327)
T ss_dssp EESSHHHH
T ss_pred ecCChHHH
Confidence 99874 54
No 38
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=77.26 E-value=6.9 Score=27.98 Aligned_cols=90 Identities=10% Similarity=-0.027 Sum_probs=45.4
Q ss_pred CCCcEEEEc-CCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSMLG-AVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIiG-p~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
++++-+||. +.... ...+..+....+||.|......+ . ..+.-.+.++. ++.+++.+...|-++++++
T Consensus 61 ~~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~~~----~---~~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i 132 (289)
T 1dbq_A 61 QKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEA----K---ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVI 132 (289)
T ss_dssp HTTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECSSC----C---SSSCEEEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccCCC----c---cCcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 456655543 33322 22233332237899998765421 1 12233455663 6666676666799999999
Q ss_pred EeCCCccccCCChHHHHHHHHh
Q psy2801 91 YDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 91 Y~dd~gl~~~~~l~~l~~~l~~ 112 (126)
+.+.+......-.+-++..+.+
T Consensus 133 ~~~~~~~~~~~R~~g~~~~l~~ 154 (289)
T 1dbq_A 133 PGPLERNTGAGRLAGFMKAMEE 154 (289)
T ss_dssp CCC------CHHHHHHHHHHHH
T ss_pred ecCCccccHHHHHHHHHHHHHH
Confidence 7654322222223344444544
No 39
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=70.90 E-value=25 Score=25.10 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY 91 (126)
++++-+||..........+..+. .+||.|......+ . . . .-.+.++. ++..++.+...|-++++++.
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~l~--~~iPvV~~~~~~~----~-~--~-~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 131 (285)
T 3c3k_A 62 GKMVDGVITMDALSELPELQNII--GAFPWVQCAEYDP----L-S--T-VSSVSIDDVAASEYVVDQLVKSGKKRIALIN 131 (285)
T ss_dssp TTCCSEEEECCCGGGHHHHHHHH--TTSSEEEESSCCT----T-S--S-SCEEECCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hCCCCEEEEeCCCCChHHHHHHh--cCCCEEEEccccC----C-C--C-CCEEEEChHHHHHHHHHHHHHcCCCeEEEEe
Confidence 55676665432222234555554 8999998765421 1 1 1 22455663 55566666667999999998
Q ss_pred eCC
Q psy2801 92 DSH 94 (126)
Q Consensus 92 ~dd 94 (126)
...
T Consensus 132 ~~~ 134 (285)
T 3c3k_A 132 HDL 134 (285)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
No 40
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=70.58 E-value=7.1 Score=27.91 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY 91 (126)
.+++-+||..........+..+.+..+||.|......+ . .....+.++. ++.+++.+...|.+++++++
T Consensus 75 ~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~------~--~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~ 146 (296)
T 3brq_A 75 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLR------K--NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLT 146 (296)
T ss_dssp HTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCS------S--SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred hcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccC------C--CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEc
Confidence 45665555422222234455443227999998764321 1 1122455663 55666666667999999998
Q ss_pred eCC
Q psy2801 92 DSH 94 (126)
Q Consensus 92 ~dd 94 (126)
.+.
T Consensus 147 ~~~ 149 (296)
T 3brq_A 147 GSM 149 (296)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 41
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=68.46 E-value=19 Score=26.18 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCcEEEE-cCCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHc--CCcEE
Q psy2801 15 SRGVFSML-GAVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYY--GWKNI 87 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f--~W~~v 87 (126)
.+++-+|| .|..... ...++. +...+||.|......+ .. .....+.++. ++.+++.+... |-+++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~~---~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I 126 (313)
T 2h3h_A 55 AEGVNGIAIAPSDPTAVIPTIKK-ALEMGIPVVTLDTDSP----DS---GRYVYIGTDNYQAGYTAGLIMKELLGGKGKV 126 (313)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHH-HHHTTCCEEEESSCCT----TS---CCSCEEECCHHHHHHHHHHHHHHHHTSCSEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHH-HHHCCCeEEEeCCCCC----Cc---ceeEEECcCHHHHHHHHHHHHHHHcCCCCEE
Confidence 45665554 4544433 244444 4457999998765422 11 1222345662 56666666665 99999
Q ss_pred EEEEeCC
Q psy2801 88 IYMYDSH 94 (126)
Q Consensus 88 ~iiY~dd 94 (126)
++++...
T Consensus 127 ~~i~~~~ 133 (313)
T 2h3h_A 127 VIGTGSL 133 (313)
T ss_dssp EEEESCS
T ss_pred EEEECCC
Confidence 9998753
No 42
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=67.00 E-value=25 Score=25.23 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=51.8
Q ss_pred cCCCcEEE-EcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcC--CcEE
Q psy2801 14 FSRGVFSM-LGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYG--WKNI 87 (126)
Q Consensus 14 ~~~gv~AI-iGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~--W~~v 87 (126)
..+++-+| +.|............+...+||.|......+ ........-.+.++. ++.+++.+...| =+++
T Consensus 58 ~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~----~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i 133 (297)
T 3rot_A 58 LATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPK----DKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRA 133 (297)
T ss_dssp HHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCS----CTTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCc----cccccCcceEEccChHHHHHHHHHHHHHhcCCCceE
Confidence 34555444 4565554333333445567999998765532 111112334555662 666666666667 8999
Q ss_pred EEEEeCCCccccCCChHHHHHHHHhh
Q psy2801 88 IYMYDSHDEMFYEGSPEFLRVFCHEK 113 (126)
Q Consensus 88 ~iiY~dd~gl~~~~~l~~l~~~l~~~ 113 (126)
+++..+.+......-.+-++..+.+.
T Consensus 134 ~~i~g~~~~~~~~~R~~Gf~~~l~~~ 159 (297)
T 3rot_A 134 LVLNPQPGHIGLEKRAYGIKTILQDK 159 (297)
T ss_dssp EEEESCTTCHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence 99976543222222233444445443
No 43
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=66.41 E-value=18 Score=25.37 Aligned_cols=72 Identities=11% Similarity=-0.086 Sum_probs=42.0
Q ss_pred CCC-cEEEE-cCCCc-chHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHc----CC
Q psy2801 15 SRG-VFSML-GAVSP-DSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYY----GW 84 (126)
Q Consensus 15 ~~g-v~AIi-Gp~~s-~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f----~W 84 (126)
.++ +-+|| .|.+. .....+. .+...+||.|......+ ...+.-.+.++. ++.+++.+... |-
T Consensus 56 ~~~~vdgii~~~~~~~~~~~~~~-~~~~~~ipvV~~~~~~~-------~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~ 127 (276)
T 3ksm_A 56 SQAPPDALILAPNSAEDLTPSVA-QYRARNIPVLVVDSDLA-------GDAHQGLVATDNYAAGQLAARALLATLDLSKE 127 (276)
T ss_dssp HHSCCSEEEECCSSTTTTHHHHH-HHHHTTCCEEEESSCCS-------SSCSSEEEECCHHHHHHHHHHHHHHHSCTTSC
T ss_pred HhCCCCEEEEeCCCHHHHHHHHH-HHHHCCCcEEEEecCCC-------CCCcceEEccCHHHHHHHHHHHHHHhcCcCCC
Confidence 345 54444 44333 3334444 45667999998765432 112333455663 66666666666 89
Q ss_pred cEEEEEEeCC
Q psy2801 85 KNIIYMYDSH 94 (126)
Q Consensus 85 ~~v~iiY~dd 94 (126)
++++++..+.
T Consensus 128 ~~i~~i~~~~ 137 (276)
T 3ksm_A 128 RNIALLRLRA 137 (276)
T ss_dssp EEEEECBCCT
T ss_pred ceEEEEEcCC
Confidence 9999997653
No 44
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=62.56 E-value=23 Score=21.51 Aligned_cols=51 Identities=12% Similarity=-0.083 Sum_probs=37.9
Q ss_pred eEEeeCCHHHHHHHHHHHc-CCc-EEEEEEeCCCccc---cCCChHHHHHHHHhhc
Q psy2801 64 AISMRPDYHQAIIDTVKYY-GWK-NIIYMYDSHDEMF---YEGSPEFLRVFCHEKL 114 (126)
Q Consensus 64 ~~~~~P~~~~Ai~dli~~f-~W~-~v~iiY~dd~gl~---~~~~l~~l~~~l~~~~ 114 (126)
.+++.|..+++++.++.+. .|. =++.|..||.=+. .....+.+.+.+++-+
T Consensus 19 VikT~PG~A~~va~~iD~~~~~~~I~GTIAGDDTIlvi~r~~~~a~~l~~~i~~l~ 74 (78)
T 1xxa_A 19 VIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELF 74 (78)
T ss_dssp EEEESTTTHHHHHHHHTTTTTTTTEEEEEECSSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred EEEeCCCcHHHHHHHHHhcCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHHHHHh
Confidence 3677788999999999976 888 7888888876332 2466677777766543
No 45
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=61.47 E-value=39 Score=24.13 Aligned_cols=88 Identities=10% Similarity=0.081 Sum_probs=48.9
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .|... ....+..+ ...+||.|......+ . . .+ -.+.++. ++..++.+...|-++++++
T Consensus 70 ~~~vdgiIi~~~~~-~~~~~~~l-~~~~iPvV~~~~~~~----~-~--~~-~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 139 (289)
T 2fep_A 70 GKQVDGIVFMGGNI-TDEHVAEF-KRSPVPIVLAASVEE----Q-E--ET-PSVAIDYEQAIYDAVKLLVDKGHTDIAFV 139 (289)
T ss_dssp HTTCSEEEECCSCC-CHHHHHHH-HHSSSCEEEESCCCT----T-C--CS-CEEECCHHHHHHHHHHHHHHTTCSSEEEE
T ss_pred hCCCCEEEEecCCC-CHHHHHHH-HhcCCCEEEEccccC----C-C--CC-CEEEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence 45555554 33322 23445554 367999998765421 1 1 11 2455663 6666666666799999999
Q ss_pred EeCC-CccccCCChHHHHHHHHh
Q psy2801 91 YDSH-DEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 91 Y~dd-~gl~~~~~l~~l~~~l~~ 112 (126)
.... +......-++-+++.+.+
T Consensus 140 ~~~~~~~~~~~~R~~Gf~~al~~ 162 (289)
T 2fep_A 140 SGPMAEPINRSKKLQGYKRALEE 162 (289)
T ss_dssp ESCTTSHHHHTTHHHHHHHHHHH
T ss_pred eCCccccccHHHHHHHHHHHHHH
Confidence 8765 322222334445555554
No 46
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=59.52 E-value=3.8 Score=29.36 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=23.0
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeeec
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITPW 48 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~~ 48 (126)
++.++||-.+--.-.-+.++..+++|||+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4567887777444455788899999999853
No 47
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=57.61 E-value=4.2 Score=29.57 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCcchHHHHHHhhCcCCCCeeeec
Q psy2801 16 RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPW 48 (126)
Q Consensus 16 ~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~ 48 (126)
..|+.|+||-.+--.-..+.++..+++|||+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 357888998877555555788899999999853
No 48
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=57.34 E-value=7.3 Score=27.97 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY 91 (126)
.+++-+||..........++.+ .+||.|......+ . . ....+.++. ++.+++.+...|-++++++.
T Consensus 61 ~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~----~-~---~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~ 129 (288)
T 2qu7_A 61 SQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELE----S-T---SLPSITVDNEEAAYIATKRVLESTCKEVGLLL 129 (288)
T ss_dssp HTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCS----S-C---CCCEEEECHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred HcCccEEEEecCCCChHHHHHh---cCCCEEEEecccC----C-C---CCCEEEECcHHHHHHHHHHHHHcCCCcEEEEe
Confidence 4577666643322211233443 6899998765422 1 1 122344552 66666666667999999998
Q ss_pred eCC
Q psy2801 92 DSH 94 (126)
Q Consensus 92 ~dd 94 (126)
...
T Consensus 130 ~~~ 132 (288)
T 2qu7_A 130 ANP 132 (288)
T ss_dssp CCT
T ss_pred cCC
Confidence 754
No 49
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=55.51 E-value=48 Score=23.39 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
++++-+|| -|.... ...+ ..+...+||.|......+ .. ...-.+..+. ++..++.+...|-++++++
T Consensus 67 ~~~vdgiIi~~~~~~-~~~~-~~l~~~~iPvV~~~~~~~----~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i 137 (292)
T 3k4h_A 67 GRQIGGIILLYSREN-DRII-QYLHEQNFPFVLIGKPYD----RK---DEITYVDNDNYTAAREVAEYLISLGHKQIAFI 137 (292)
T ss_dssp TTCCCEEEESCCBTT-CHHH-HHHHHTTCCEEEESCCSS----CT---TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCCCEEEEeCCCCC-hHHH-HHHHHCCCCEEEECCCCC----CC---CCCCEEEECcHHHHHHHHHHHHHCCCceEEEE
Confidence 45565544 332222 2333 345567999998765432 11 1123455663 6666666667899999999
Q ss_pred EeCCCccccCCChHHHHHHHHh
Q psy2801 91 YDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 91 Y~dd~gl~~~~~l~~l~~~l~~ 112 (126)
....+......-++-++..+.+
T Consensus 138 ~~~~~~~~~~~R~~gf~~~l~~ 159 (292)
T 3k4h_A 138 GGGSDLLVTRDRLAGMSDALKL 159 (292)
T ss_dssp ESCTTBHHHHHHHHHHHHHHHH
T ss_pred eCcccchhHHHHHHHHHHHHHH
Confidence 8765432222223444455544
No 50
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=52.77 E-value=58 Score=23.00 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=43.2
Q ss_pred cCCCcEEEE-cCCCcc-hHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCC--cE
Q psy2801 14 FSRGVFSML-GAVSPD-SFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGW--KN 86 (126)
Q Consensus 14 ~~~gv~AIi-Gp~~s~-~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W--~~ 86 (126)
..+++-+|| .|.... ....++. +...+||.|......+ .. ...-.+.++. ++.+++.+...|- ++
T Consensus 66 ~~~~vdgiii~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~~---~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~ 137 (304)
T 3gbv_A 66 IEEQPDGVMFAPTVPQYTKGFTDA-LNELGIPYIYIDSQIK----DA---PPLAFFGQNSHQSGYFAARMLMLLAVNDRE 137 (304)
T ss_dssp HTTCCSEEEECCSSGGGTHHHHHH-HHHHTCCEEEESSCCT----TS---CCSEEEECCHHHHHHHHHHHHHHHSTTCSE
T ss_pred HhcCCCEEEECCCChHHHHHHHHH-HHHCCCeEEEEeCCCC----CC---CceEEEecChHHHHHHHHHHHHHHhCCCCe
Confidence 355665444 444443 3344444 4556999998765432 11 1234555663 7777777777788 99
Q ss_pred EEEEEeC
Q psy2801 87 IIYMYDS 93 (126)
Q Consensus 87 v~iiY~d 93 (126)
++++..+
T Consensus 138 i~~i~~~ 144 (304)
T 3gbv_A 138 IVIFRKI 144 (304)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999854
No 51
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=52.52 E-value=25 Score=25.84 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=42.8
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .|... ....+..++...+||.|......+ . ..+ -.+..+. ++..++.+...|-++++++
T Consensus 117 ~~~vdgiIi~~~~~-~~~~~~~~~~~~~iPvV~~~~~~~----~---~~~-~~V~~D~~~~~~~a~~~L~~~G~~~I~~i 187 (338)
T 3dbi_A 117 DLRCDAIMIYPRFL-SVDEIDDIIDAHSQPIMVLNRRLR----K---NSS-HSVWCDHKQTSFNAVAELINAGHQEIAFL 187 (338)
T ss_dssp HTTCSEEEECCSSS-CHHHHHHHHHHCSSCEEEESSCCS----S---SGG-GEECBCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCCEEEEeCCCC-ChHHHHHHHHcCCCCEEEEcCCCC----C---CCC-CEEEEChHHHHHHHHHHHHHCCCCEEEEE
Confidence 34554544 33332 235566778888999998765422 1 112 2355663 5555666666799999999
Q ss_pred EeCC
Q psy2801 91 YDSH 94 (126)
Q Consensus 91 Y~dd 94 (126)
....
T Consensus 188 ~~~~ 191 (338)
T 3dbi_A 188 TGSM 191 (338)
T ss_dssp CCCT
T ss_pred eCCC
Confidence 7653
No 52
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=52.40 E-value=58 Score=22.91 Aligned_cols=72 Identities=15% Similarity=-0.030 Sum_probs=40.8
Q ss_pred CCCcEEEE-cCCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHH-cC-CcEE
Q psy2801 15 SRGVFSML-GAVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKY-YG-WKNI 87 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~-f~-W~~v 87 (126)
.+++-+|| .+..... ...+.. +...+||.|......+ . ......+.++. ++.+++.+.. .| -+++
T Consensus 63 ~~~vdgii~~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~---~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i 134 (289)
T 3brs_A 63 KRKPDVILLAAADYEKTYDAAKE-IKDAGIKLIVIDSGMK----Q---DIADITVATDNIQAGIRIGAVTKNLVRKSGKI 134 (289)
T ss_dssp HTCCSEEEECCSCTTTTHHHHTT-TGGGTCEEEEESSCCS----S---CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEE
T ss_pred HhCCCEEEEeCCChHHhHHHHHH-HHHCCCcEEEECCCCC----C---CcceEEEeeChHHHHHHHHHHHHHHcCCCceE
Confidence 45665555 3433332 244444 4457999998765421 1 11234566763 5555555555 46 9999
Q ss_pred EEEEeCC
Q psy2801 88 IYMYDSH 94 (126)
Q Consensus 88 ~iiY~dd 94 (126)
+++....
T Consensus 135 ~~i~~~~ 141 (289)
T 3brs_A 135 GVISFVK 141 (289)
T ss_dssp EEEESCT
T ss_pred EEEECCC
Confidence 9998653
No 53
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=52.19 E-value=40 Score=24.24 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=41.5
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .|........+..+.+ +||.|......+ . .+ -.+..+. ++..++.+...|-++++++
T Consensus 69 ~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~------~--~~-~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 137 (303)
T 3kke_A 69 EGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVP------G--RV-GSVILDDQKGGGIATEHLITLGHSRIAFI 137 (303)
T ss_dssp SCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCT------T--CC-CEEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCC------C--CC-CEEEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence 45664444 3433332226666666 999998765422 1 11 2344552 5666666666799999999
Q ss_pred EeCCC
Q psy2801 91 YDSHD 95 (126)
Q Consensus 91 Y~dd~ 95 (126)
....+
T Consensus 138 ~~~~~ 142 (303)
T 3kke_A 138 SGTAI 142 (303)
T ss_dssp ESCSS
T ss_pred eCCCc
Confidence 86544
No 54
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=52.14 E-value=31 Score=25.18 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=41.8
Q ss_pred hccCCCcEE-EEcCCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEe-eCC---HHHHHHHHHHH---c
Q psy2801 12 NQFSRGVFS-MLGAVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISM-RPD---YHQAIIDTVKY---Y 82 (126)
Q Consensus 12 ~~~~~gv~A-IiGp~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~-~P~---~~~Ai~dli~~---f 82 (126)
.+..+|+-+ |+.|.+... ...+. .+...+||.|.+....+ . ....+ .+ ..+ ..+..++.+.. .
T Consensus 55 ~li~~~vdgiii~~~~~~~~~~~~~-~a~~~gipvV~~d~~~~----~-~~~~~--~v~~~D~~~~g~~~~~~L~~~~~~ 126 (316)
T 1tjy_A 55 NFVNQGYDAIIVSAVSPDGLCPALK-RAMQRGVKILTWDSDTK----P-ECRSY--YINQGTPKQLGSMLVEMAAHQVDK 126 (316)
T ss_dssp HHHHTTCSEEEECCSSSSTTHHHHH-HHHHTTCEEEEESSCCC----G-GGCSE--EEESCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHcCCCEEEEeCCCHHHHHHHHH-HHHHCcCEEEEecCCCC----C-CCceE--EEecCCHHHHHHHHHHHHHHHcCC
Confidence 334567655 456666544 33444 45667999998765421 1 11112 23 455 25555555444 4
Q ss_pred CCcEEEEEEeCC
Q psy2801 83 GWKNIIYMYDSH 94 (126)
Q Consensus 83 ~W~~v~iiY~dd 94 (126)
|-++++++....
T Consensus 127 g~~~i~~i~g~~ 138 (316)
T 1tjy_A 127 EKAKVAFFYSSP 138 (316)
T ss_dssp SSEEEEEEESCS
T ss_pred CCCEEEEEEcCC
Confidence 688999997643
No 55
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=52.00 E-value=41 Score=24.74 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=39.2
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .+.... ...+..+....+||.|......+ . ..+.-.+.++. ++..++.+...|-+++++|
T Consensus 112 ~~~vdgiI~~~~~~~-~~~~~~l~~~~~iPvV~~~~~~~----~---~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i 183 (340)
T 1qpz_A 112 QKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEA----K---ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVI 183 (340)
T ss_dssp HTTCSEEEECCSCCC-HHHHHHHHTTTTSCEEEEEESSC----C---CSSSEEEECCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cCCCCEEEEeCCCCC-hHHHHHHHhhCCCCEEEEecccC----C---CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34555554 233222 22333333346899998654321 1 12223566663 5555665556799999999
Q ss_pred EeCC
Q psy2801 91 YDSH 94 (126)
Q Consensus 91 Y~dd 94 (126)
....
T Consensus 184 ~g~~ 187 (340)
T 1qpz_A 184 PGPL 187 (340)
T ss_dssp CCCT
T ss_pred eCCC
Confidence 7643
No 56
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=51.94 E-value=44 Score=23.39 Aligned_cols=68 Identities=4% Similarity=-0.202 Sum_probs=37.2
Q ss_pred CCCcEEEEc-CCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSMLG-AVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIiG-p~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+||. +.... ...++. +...+||.|...... .+ .-.+.++ .++.+++.+...|-++++++
T Consensus 53 ~~~vdgiI~~~~~~~-~~~~~~-~~~~~iPvV~~~~~~------~~----~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i 120 (276)
T 2h0a_A 53 AYLTDGLILASYDLT-ERFEEG-RLPTERPVVLVDAQN------PR----YDSVYLDNRLGGRLAGAYLARFPGPIFAIA 120 (276)
T ss_dssp -CCCSEEEEESCCCC--------CCSCSSCEEEESSCC------TT----SEEEEECSHHHHHHHHHHHTTSSSCEEEEE
T ss_pred hCCCCEEEEecCCCC-HHHHHH-HhhcCCCEEEEeccC------CC----CCEEEEccHHHHHHHHHHHHHcCCCeEEEE
Confidence 345545442 33322 234443 456799999875432 11 2344455 26666677767799999999
Q ss_pred EeCC
Q psy2801 91 YDSH 94 (126)
Q Consensus 91 Y~dd 94 (126)
....
T Consensus 121 ~~~~ 124 (276)
T 2h0a_A 121 VEEE 124 (276)
T ss_dssp ECCS
T ss_pred ecCc
Confidence 8754
No 57
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=51.68 E-value=11 Score=26.48 Aligned_cols=33 Identities=3% Similarity=0.175 Sum_probs=27.9
Q ss_pred cCCCcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 14 FSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 14 ~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
|...+++|.|+..+.-+..-..++..+++|++.
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 345689999999998888888899999999995
No 58
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=51.57 E-value=67 Score=23.37 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=48.1
Q ss_pred cCCCcEEEEc-CCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEE
Q psy2801 14 FSRGVFSMLG-AVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIY 89 (126)
Q Consensus 14 ~~~gv~AIiG-p~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~i 89 (126)
..+++-+||- +.... ...+.. +...+||.|......+ . . .+ -.+..+. ++..++.+...|-+++++
T Consensus 113 ~~~~vdgiI~~~~~~~-~~~~~~-l~~~~iPvV~~~~~~~----~-~--~~-~~V~~D~~~~~~~a~~~L~~~G~~~I~~ 182 (332)
T 2hsg_A 113 LGKQVDGIIFMSGNVT-EEHVEE-LKKSPVPVVLAASIES----T-N--QI-PSVTIDYEQAAFDAVQSLIDSGHKNIAF 182 (332)
T ss_dssp SCCSSCCEEECCSSCC-HHHHHH-HTTSSSCEEEESCCCS----C-T--TS-CEEEECHHHHHHHHHHHHHTTTCSCEEE
T ss_pred HhCCCcEEEEecCCCC-HHHHHH-HHhCCCCEEEEccccC----C-C--CC-CEEEEChHHHHHHHHHHHHHCCCCEEEE
Confidence 3556655543 33222 344554 4567999998765421 1 1 11 2345553 555566666679999999
Q ss_pred EEeCC-CccccCCChHHHHHHHHh
Q psy2801 90 MYDSH-DEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 90 iY~dd-~gl~~~~~l~~l~~~l~~ 112 (126)
+.... +......-++-+++.+.+
T Consensus 183 i~~~~~~~~~~~~R~~Gf~~al~~ 206 (332)
T 2hsg_A 183 VSGTLEEPINHAKKVKGYKRALTE 206 (332)
T ss_dssp EESCTTSHHHHTTHHHHHHHHHHT
T ss_pred EeCCcccCccHHHHHHHHHHHHHH
Confidence 98765 322222333444445544
No 59
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=51.53 E-value=25 Score=20.89 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=25.5
Q ss_pred eEEeeCCHHHHHHHHHHHcCCcEEE-EEEeCCCcc
Q psy2801 64 AISMRPDYHQAIIDTVKYYGWKNII-YMYDSHDEM 97 (126)
Q Consensus 64 ~~~~~P~~~~Ai~dli~~f~W~~v~-iiY~dd~gl 97 (126)
.+++.|..+++++.++.+.+|..+. .|..||.=+
T Consensus 17 VikT~pG~A~~va~~iD~~~~~eI~GTIAGDDTIl 51 (71)
T 1b4b_A 17 VLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCL 51 (71)
T ss_dssp EEEESTTCHHHHHHHHHHHCCTTEEEEEECSSEEE
T ss_pred EEEeCCCcHHHHHHHHHhCCCCCeEEEEeeCCEEE
Confidence 3677788999999999999999864 444444433
No 60
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=51.32 E-value=25 Score=25.14 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=36.6
Q ss_pred CCCcEEEEc-CCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSMLG-AVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIiG-p~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+||. +.... ...+.. +...+||.|......+ . . .-.+.++. ++.+++.+...|-++++++
T Consensus 63 ~~~vdgiI~~~~~~~-~~~~~~-l~~~~iPvV~~~~~~~------~--~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i 131 (290)
T 3clk_A 63 ERPVMGILLLSIALT-DDNLQL-LQSSDVPYCFLSMGFD------D--D-RPFISSDDEDIGYQATNLLINEGHRQIGIA 131 (290)
T ss_dssp SSCCSEEEEESCC-----CHHH-HHCC--CEEEESCC--------C--C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred hcCCCEEEEecccCC-HHHHHH-HHhCCCCEEEEcCCCC------C--C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEE
Confidence 455555442 32222 233444 3457999998765421 1 1 23455663 6666666666799999999
Q ss_pred EeCC
Q psy2801 91 YDSH 94 (126)
Q Consensus 91 Y~dd 94 (126)
....
T Consensus 132 ~~~~ 135 (290)
T 3clk_A 132 GIDQ 135 (290)
T ss_dssp SCCC
T ss_pred eCCC
Confidence 7653
No 61
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=49.96 E-value=58 Score=23.49 Aligned_cols=73 Identities=12% Similarity=-0.005 Sum_probs=39.7
Q ss_pred CCcEEE-EcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHH-------cCC
Q psy2801 16 RGVFSM-LGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKY-------YGW 84 (126)
Q Consensus 16 ~gv~AI-iGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~-------f~W 84 (126)
+++-+| +.|.........-..+...+||.|......+ . ...+...+..+. ++..++.+.. .|-
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~----~--~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~ 131 (330)
T 3uug_A 58 KGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIR----N--SGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGP 131 (330)
T ss_dssp HTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCC----S--CTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCC
T ss_pred cCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCC----C--CCceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCc
Confidence 344333 4555543333333345667999998765532 1 112223444452 4555554444 588
Q ss_pred cEEEEEEeCC
Q psy2801 85 KNIIYMYDSH 94 (126)
Q Consensus 85 ~~v~iiY~dd 94 (126)
++++++....
T Consensus 132 ~~i~~i~g~~ 141 (330)
T 3uug_A 132 FNIELFGGSP 141 (330)
T ss_dssp EEEEECBCCT
T ss_pred eEEEEEECCC
Confidence 8999996544
No 62
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=49.62 E-value=43 Score=23.83 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=39.7
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .|..... ..+.. +...+||.|......+ . . .+ -.+.++. ++..++.+...|-++++++
T Consensus 62 ~~~vdgiIi~~~~~~~-~~~~~-l~~~~iPvV~~~~~~~----~-~--~~-~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 131 (287)
T 3bbl_A 62 SGNVDGFVLSSINYND-PRVQF-LLKQKFPFVAFGRSNP----D-W--DF-AWVDIDGTAGTRQAVEYLIGRGHRRIAIL 131 (287)
T ss_dssp TTCCSEEEECSCCTTC-HHHHH-HHHTTCCEEEESCCST----T-C--CC-CEEEECHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cCCCCEEEEeecCCCc-HHHHH-HHhcCCCEEEECCcCC----C-C--CC-CEEEeccHHHHHHHHHHHHHCCCCeEEEE
Confidence 45565554 3333222 34444 3457999998765421 1 1 11 2344552 5556666656799999999
Q ss_pred EeCC
Q psy2801 91 YDSH 94 (126)
Q Consensus 91 Y~dd 94 (126)
....
T Consensus 132 ~~~~ 135 (287)
T 3bbl_A 132 AWPE 135 (287)
T ss_dssp ECCT
T ss_pred eCCc
Confidence 8654
No 63
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=48.65 E-value=34 Score=24.40 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=40.3
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .|........+.. +...+||.|......+ . . .+ -.+.++. ++.+++.+...|-++++++
T Consensus 74 ~~~vdgii~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~-~--~~-~~V~~d~~~~~~~a~~~L~~~G~~~I~~i 144 (293)
T 2iks_A 74 QRQVDAIIVSTSLPPEHPFYQR-WANDPFPIVALDRALD----R-E--HF-TSVVGADQDDAEMLAEELRKFPAETVLYL 144 (293)
T ss_dssp HTTCSEEEECCSSCTTCHHHHT-TTTSSSCEEEEESCCC----T-T--TC-EEEEECHHHHHHHHHHHHHTSCCSSEEEE
T ss_pred HcCCCEEEEeCCCCCcHHHHHH-HHhCCCCEEEECCccC----c-C--CC-CEEEecCHHHHHHHHHHHHHCCCCEEEEE
Confidence 34554544 3333222223344 4567999998765421 1 1 12 2455553 5556666666799999999
Q ss_pred EeCC
Q psy2801 91 YDSH 94 (126)
Q Consensus 91 Y~dd 94 (126)
....
T Consensus 145 ~~~~ 148 (293)
T 2iks_A 145 GALP 148 (293)
T ss_dssp EECT
T ss_pred ecCc
Confidence 8764
No 64
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=48.07 E-value=71 Score=22.91 Aligned_cols=91 Identities=9% Similarity=-0.112 Sum_probs=47.8
Q ss_pred CCCcEEE-EcCCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHH-HcCCcEEE
Q psy2801 15 SRGVFSM-LGAVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVK-YYGWKNII 88 (126)
Q Consensus 15 ~~gv~AI-iGp~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~-~f~W~~v~ 88 (126)
.+++-+| +.|..... ...++. +...+||.|......+ . ..+.-.+..+ .++..++.+. ..|=++++
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~---~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~ 127 (313)
T 3m9w_A 56 NRGVDVLVIIPYNGQVLSNVVKE-AKQEGIKVLAYDRMIN----D---ADIDFYISFDNEKVGELQAKALVDIVPQGNYF 127 (313)
T ss_dssp HTTCSEEEEECSSTTSCHHHHHH-HHTTTCEEEEESSCCT----T---SCCSEEEEECHHHHHHHHHHHHHHHCSSEEEE
T ss_pred HcCCCEEEEeCCChhhhHHHHHH-HHHCCCeEEEECCcCC----C---CCceEEEecCHHHHHHHHHHHHHHhCCCCcEE
Confidence 3454333 33444333 445554 4567999998765432 1 1222344455 2555565555 78999999
Q ss_pred EEEeCCCccccCCChHHHHHHHHhh
Q psy2801 89 YMYDSHDEMFYEGSPEFLRVFCHEK 113 (126)
Q Consensus 89 iiY~dd~gl~~~~~l~~l~~~l~~~ 113 (126)
++..+.+......-.+-++..+.+.
T Consensus 128 ~i~g~~~~~~~~~R~~Gf~~~l~~~ 152 (313)
T 3m9w_A 128 LMGGSPVDNNAKLFRAGQMKVLKPY 152 (313)
T ss_dssp EEESCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCccHHHHHHHHHHHHHhh
Confidence 9976543222222233444445443
No 65
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=47.93 E-value=61 Score=22.82 Aligned_cols=88 Identities=7% Similarity=-0.039 Sum_probs=47.9
Q ss_pred CCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHH--cCCcEEEE
Q psy2801 16 RGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKY--YGWKNIIY 89 (126)
Q Consensus 16 ~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~--f~W~~v~i 89 (126)
+++-+|| .|............+...+||.|......+ . ..-.+..+. ++..++.+.. -|=+++++
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~------~---~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~ 130 (291)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP------H---AINNTTSNNYSIGAELALQMVADLGGKGNVLV 130 (291)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT------T---CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC------C---cCceEecChHHHHHHHHHHHHHHcCCCceEEE
Confidence 4554443 555544443444446667999998765421 1 122455552 6666666666 78999999
Q ss_pred EEeCCCccccCCChHHHHHHHHh
Q psy2801 90 MYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 90 iY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
+....+......-++-+++.+.+
T Consensus 131 i~~~~~~~~~~~R~~gf~~~l~~ 153 (291)
T 3l49_A 131 FNGFYSVPVCKIRYDQMKYVLEA 153 (291)
T ss_dssp ECSCTTSHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCchHHHHHHHHHHHHHH
Confidence 96543322222223344444544
No 66
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=47.37 E-value=42 Score=23.49 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=34.4
Q ss_pred HHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCC
Q psy2801 31 DTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHD 95 (126)
Q Consensus 31 ~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~ 95 (126)
..+.. +...+||.|......+ . ...-.+.++. ++.+++.+...|-++++++..+.+
T Consensus 73 ~~~~~-l~~~~iPvV~~~~~~~----~----~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 131 (275)
T 3d8u_A 73 RTHQL-LEASNTPVLEIAELSS----K----ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGN 131 (275)
T ss_dssp HHHHH-HHHHTCCEEEESSSCS----S----SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCS
T ss_pred HHHHH-HHhCCCCEEEEeeccC----C----CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 44444 3457899998754321 1 1123455663 555666666679999999987643
No 67
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=45.64 E-value=74 Score=23.10 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=39.6
Q ss_pred CCCcEEEEc-CCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHc--CCcEE
Q psy2801 15 SRGVFSMLG-AVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYY--GWKNI 87 (126)
Q Consensus 15 ~~gv~AIiG-p~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f--~W~~v 87 (126)
.+++-+||. |..... ...+.. +...+||.|......+ . ......+.++. ++.+++.+... |-+++
T Consensus 60 ~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~---~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I 131 (325)
T 2x7x_A 60 DEGVDLLIISANEAAPMTPIVEE-AYQKGIPVILVDRKIL----S---DKYTAYIGADNYEIGRSVGNYIASSLKGKGNI 131 (325)
T ss_dssp HTTCSEEEECCSSHHHHHHHHHH-HHHTTCCEEEESSCCS----S---SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEE
T ss_pred HcCCCEEEEeCCCHHHHHHHHHH-HHHCCCeEEEeCCCCC----C---cceeEEEecCHHHHHHHHHHHHHHHcCCCceE
Confidence 456656554 333322 233433 4457999998765421 1 11223455663 44455555443 89999
Q ss_pred EEEEeCC
Q psy2801 88 IYMYDSH 94 (126)
Q Consensus 88 ~iiY~dd 94 (126)
+++....
T Consensus 132 ~~i~~~~ 138 (325)
T 2x7x_A 132 VELTGLS 138 (325)
T ss_dssp EEEESCT
T ss_pred EEEECCC
Confidence 9998653
No 68
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=45.13 E-value=39 Score=24.11 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=40.4
Q ss_pred CCCcEEEEc-CCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSMLG-AVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIiG-p~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+||- |.... ...+..+ ...+||.|......+ . .. .-.+.++. ++..++.+...|-++++++
T Consensus 65 ~~~vdgiIi~~~~~~-~~~~~~l-~~~~iPvV~~~~~~~----~---~~-~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 134 (290)
T 2rgy_A 65 GRDCDGVVVISHDLH-DEDLDEL-HRMHPKMVFLNRAFD----A---LP-DASFCPDHRRGGELAAATLIEHGHRKLAVI 134 (290)
T ss_dssp HTTCSEEEECCSSSC-HHHHHHH-HHHCSSEEEESSCCT----T---SG-GGEECCCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hcCccEEEEecCCCC-HHHHHHH-hhcCCCEEEEccccC----C---CC-CCEEEeCcHHHHHHHHHHHHHCCCceEEEE
Confidence 445555543 33322 3444443 347899998765421 1 11 22455663 5666666666799999999
Q ss_pred EeCC
Q psy2801 91 YDSH 94 (126)
Q Consensus 91 Y~dd 94 (126)
....
T Consensus 135 ~~~~ 138 (290)
T 2rgy_A 135 SGPF 138 (290)
T ss_dssp ESCT
T ss_pred eCCC
Confidence 8754
No 69
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=42.71 E-value=13 Score=25.84 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=24.5
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|+||..+--+-...-++..+++|+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 479999999997776667777778999996
No 70
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=42.71 E-value=73 Score=22.45 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=37.6
Q ss_pred CCCcEEEEc-CCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEE-eeCCH---HHHHHHHHHHc------
Q psy2801 15 SRGVFSMLG-AVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAIS-MRPDY---HQAIIDTVKYY------ 82 (126)
Q Consensus 15 ~~gv~AIiG-p~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~-~~P~~---~~Ai~dli~~f------ 82 (126)
.+++-+||. +..... ...++. +...+||.|......+ . ...... +.++. ++.+++.+...
T Consensus 56 ~~~vdgiI~~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~---~~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~ 127 (290)
T 2fn9_A 56 AAGYDAIIFNPTDADGSIANVKR-AKEAGIPVFCVDRGIN----A---RGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYP 127 (290)
T ss_dssp HTTCSEEEECCSCTTTTHHHHHH-HHHTTCCEEEESSCCS----C---SSSSSEEEEECHHHHHHHHHHHHHHHHHHHCS
T ss_pred HcCCCEEEEecCChHHHHHHHHH-HHHCCCeEEEEecCCC----C---CCceEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence 345655543 333322 234444 4457999998765422 1 111123 55662 55555555555
Q ss_pred CCcE--EEEEEeC
Q psy2801 83 GWKN--IIYMYDS 93 (126)
Q Consensus 83 ~W~~--v~iiY~d 93 (126)
|-|+ ++++...
T Consensus 128 G~r~i~i~~l~g~ 140 (290)
T 2fn9_A 128 DAKEIPYAELLGI 140 (290)
T ss_dssp SCSCEEEEEEECC
T ss_pred cccceeEEEEEcC
Confidence 8899 6777654
No 71
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=42.27 E-value=96 Score=22.49 Aligned_cols=77 Identities=9% Similarity=-0.030 Sum_probs=41.9
Q ss_pred CCC--cEEEEc-CCCcchH-HHHHHhhCcCCCCeeeecCCCCCCCCCCCC-C-CceEEeeCCH---HHHHHHHHHH--cC
Q psy2801 15 SRG--VFSMLG-AVSPDSF-DTFHSYSNTFQMPFITPWFPEKVLAPSSGF-L-DYAISMRPDY---HQAIIDTVKY--YG 83 (126)
Q Consensus 15 ~~g--v~AIiG-p~~s~~~-~~v~si~~~~~IP~Is~~~~~~~~~~~~~~-~-~f~~~~~P~~---~~Ai~dli~~--f~ 83 (126)
+++ +-+||. +...... ..++. +...+||.|......+.. .... . ...-.+.++. ++.+++.+.. -|
T Consensus 59 ~~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~--~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G 135 (332)
T 2rjo_A 59 QKTGGNLVLNVDPNDSADARVIVEA-CSKAGAYVTTIWNKPKDL--HPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGG 135 (332)
T ss_dssp HHTTTCEEEEECCSSHHHHHHHHHH-HHHHTCEEEEESCCCTTC--CGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTT
T ss_pred HCCCCCCEEEEeCCCHHHHHHHHHH-HHHCCCeEEEECCCCCcc--cchhcccceeEEEccChHHHHHHHHHHHHHHcCC
Confidence 446 766654 4333322 33443 445689999876542200 0000 0 2334566763 5555555555 69
Q ss_pred CcEEEEEEeCC
Q psy2801 84 WKNIIYMYDSH 94 (126)
Q Consensus 84 W~~v~iiY~dd 94 (126)
-+++++|....
T Consensus 136 ~~~I~~i~g~~ 146 (332)
T 2rjo_A 136 KGGVVALGGIF 146 (332)
T ss_dssp CEEEEEEECCT
T ss_pred CCeEEEEECCC
Confidence 99999998653
No 72
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=42.13 E-value=55 Score=19.69 Aligned_cols=48 Identities=4% Similarity=0.055 Sum_probs=31.7
Q ss_pred eEEeeCCHHHHHHHHHHHcCCcEEE-EEEeCCCccc---cCCChHHHHHHHH
Q psy2801 64 AISMRPDYHQAIIDTVKYYGWKNII-YMYDSHDEMF---YEGSPEFLRVFCH 111 (126)
Q Consensus 64 ~~~~~P~~~~Ai~dli~~f~W~~v~-iiY~dd~gl~---~~~~l~~l~~~l~ 111 (126)
.+++.|..+++++.+|.+.+|..+. .|..||.=+. .....+.+.+.+.
T Consensus 25 VikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~l~ 76 (79)
T 2zfz_A 25 VLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFE 76 (79)
T ss_dssp EEECSTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEECTTCCHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHHH
Confidence 3666688999999999999999864 4444443222 2345555555544
No 73
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=41.60 E-value=89 Score=21.94 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=47.5
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .|..... ..+... ...+||.|......+ .+ -.+..+. ++.+++.+...|-++++++
T Consensus 66 ~~~vdgiIi~~~~~~~-~~~~~~-~~~~iPvV~~~~~~~---------~~-~~V~~D~~~~~~~a~~~L~~~G~~~i~~i 133 (289)
T 3g85_A 66 ENSFDAAIIANISNYD-LEYLNK-ASLTLPIILFNRLSN---------KY-SSVNVDNYKMGEKASLLFAKKRYKSAAAI 133 (289)
T ss_dssp TTCCSEEEESSCCHHH-HHHHHH-CCCSSCEEEESCCCS---------SS-EEEEECHHHHHHHHHHHHHHTTCCBCEEE
T ss_pred ccCCCEEEEecCCccc-HHHHHh-ccCCCCEEEECCCCC---------CC-CEEEeCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34554444 4443333 333333 367999998765421 11 2455562 6666666667899999999
Q ss_pred EeCCCccccCCChHHHHHHHHh
Q psy2801 91 YDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 91 Y~dd~gl~~~~~l~~l~~~l~~ 112 (126)
..+.+......-.+-++..+.+
T Consensus 134 ~~~~~~~~~~~R~~gf~~~l~~ 155 (289)
T 3g85_A 134 LTESLNDAMDNRNKGFIETCHK 155 (289)
T ss_dssp ECCCSSHHHHHHHHHHHHHHHH
T ss_pred eCCcccccHHHHHHHHHHHHHH
Confidence 8765432222223444444544
No 74
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=40.98 E-value=45 Score=23.67 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=42.1
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| .|... ....++ .+...+||.|......+ . ..+ -.+..+. ++.+++.+...|-++++++
T Consensus 62 ~~~vdgiIi~~~~~-~~~~~~-~~~~~~iPvV~~~~~~~----~---~~~-~~V~~D~~~~g~~a~~~L~~~G~~~i~~i 131 (291)
T 3egc_A 62 ERRVDGLILAPSEG-EHDYLR-TELPKTFPIVAVNRELR----I---PGC-GAVLSENVRGARTAVEYLIARGHTRIGAI 131 (291)
T ss_dssp HTTCSEEEECCCSS-CCHHHH-HSSCTTSCEEEESSCCC----C---TTC-EEEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HCCCCEEEEeCCCC-ChHHHH-HhhccCCCEEEEecccC----C---CCC-CEEEECcHHHHHHHHHHHHHcCCCEEEEE
Confidence 34554444 33333 333444 45667999998765432 1 112 3455562 6666676677899999999
Q ss_pred EeCCC
Q psy2801 91 YDSHD 95 (126)
Q Consensus 91 Y~dd~ 95 (126)
....+
T Consensus 132 ~~~~~ 136 (291)
T 3egc_A 132 VGSAG 136 (291)
T ss_dssp CSCTT
T ss_pred eCCCC
Confidence 76543
No 75
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=40.91 E-value=94 Score=22.02 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=42.2
Q ss_pred ccCCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEE
Q psy2801 13 QFSRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNII 88 (126)
Q Consensus 13 ~~~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ 88 (126)
+..+++-+|| .|.... ...+..+. . +||.|......+ . . .+ -.+..+. ++..++.+...|-++++
T Consensus 62 l~~~~vdgiIi~~~~~~-~~~~~~~~-~-~iPvV~i~~~~~----~-~--~~-~~V~~D~~~~~~~a~~~L~~~G~~~I~ 130 (289)
T 3k9c_A 62 LMRERCEAAILLGTRFD-TDELGALA-D-RVPALVVARASG----L-P--GV-GAVRGDDVAGITLAVDHLTELGHRNIA 130 (289)
T ss_dssp HTTTTEEEEEEETCCCC-HHHHHHHH-T-TSCEEEESSCCS----S-T--TS-EEEEECHHHHHHHHHHHHHHTTCCSEE
T ss_pred HHhCCCCEEEEECCCCC-HHHHHHHH-c-CCCEEEEcCCCC----C-C--CC-CEEEeChHHHHHHHHHHHHHCCCCcEE
Confidence 3456665554 333332 35555554 4 999998765422 1 1 12 3455552 66666666668999999
Q ss_pred EEEeCC
Q psy2801 89 YMYDSH 94 (126)
Q Consensus 89 iiY~dd 94 (126)
++....
T Consensus 131 ~i~~~~ 136 (289)
T 3k9c_A 131 HIDGAD 136 (289)
T ss_dssp EECCTT
T ss_pred EEeCCC
Confidence 997654
No 76
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=40.67 E-value=94 Score=21.94 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=40.6
Q ss_pred CCCcEEE-EcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHH-cCCc-EEE
Q psy2801 15 SRGVFSM-LGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKY-YGWK-NII 88 (126)
Q Consensus 15 ~~gv~AI-iGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~-f~W~-~v~ 88 (126)
.+++-+| +.|............+...+||.|....... . . ..+ ..+.++. ++..++.+.. .|-+ +++
T Consensus 59 ~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~----~-~-~~~-~~v~~d~~~~g~~a~~~l~~~~g~~~~i~ 131 (303)
T 3d02_A 59 ARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQ----P-S-ANW-DVEIIDNEKFAAEYVEHMAKRMGGKGGYV 131 (303)
T ss_dssp HTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTTC----T-T-CSE-EEESSCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCC----C-C-Cce-EEEecCHHHHHHHHHHHHHHHhCcCceEE
Confidence 4566554 4565443332223345567999998765411 1 1 122 2355662 5555555555 8887 999
Q ss_pred EEEeCC
Q psy2801 89 YMYDSH 94 (126)
Q Consensus 89 iiY~dd 94 (126)
++....
T Consensus 132 ~i~g~~ 137 (303)
T 3d02_A 132 IYVGSL 137 (303)
T ss_dssp EECSCS
T ss_pred EEecCC
Confidence 886543
No 77
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=40.60 E-value=26 Score=24.49 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=40.5
Q ss_pred CCcEEE-EcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEE
Q psy2801 16 RGVFSM-LGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 16 ~gv~AI-iGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY 91 (126)
+++-+| +.|........++. +...+||.|......+ . . .+ -.+.++. ++..++.+...|-++++++.
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~-~--~~-~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~ 127 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRE-LQDKGLPVIAIDRRLD----P-A--HF-CSVISDDRDASRQLAASLLSSAPRSIALIG 127 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHH-HHHTTCCEEEESSCCC----T-T--TC-EEEEECHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cCCCEEEEecCccccHHHHHH-HHHcCCCEEEEccCCC----c-c--cc-CEEEEchHHHHHHHHHHHHHCCCcEEEEEe
Confidence 454343 34443222333333 4557999998765432 1 1 11 2345553 66666666667999999998
Q ss_pred eCCC
Q psy2801 92 DSHD 95 (126)
Q Consensus 92 ~dd~ 95 (126)
...+
T Consensus 128 ~~~~ 131 (272)
T 3o74_A 128 ARPE 131 (272)
T ss_dssp ECTT
T ss_pred cCCC
Confidence 7654
No 78
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=40.39 E-value=19 Score=24.37 Aligned_cols=29 Identities=7% Similarity=0.306 Sum_probs=23.9
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
+++|.|+..+--+.....++..+++|++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 78999998887776667777778999996
No 79
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=40.20 E-value=33 Score=20.96 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=26.8
Q ss_pred eEEeeCCHHHHHHHHHHHcCCcEE-EEEEeCCCcccc
Q psy2801 64 AISMRPDYHQAIIDTVKYYGWKNI-IYMYDSHDEMFY 99 (126)
Q Consensus 64 ~~~~~P~~~~Ai~dli~~f~W~~v-~iiY~dd~gl~~ 99 (126)
.+++.|..+++++.+|.+.+|..+ +.|..||.=+.-
T Consensus 29 VikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi 65 (83)
T 2p5m_A 29 VLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILII 65 (83)
T ss_dssp EEEESTTCHHHHHHHHHTTTCTTCCEEEECSSEEEEE
T ss_pred EEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEE
Confidence 367778899999999999999986 455555444433
No 80
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=39.71 E-value=71 Score=22.86 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=39.4
Q ss_pred CCcEEEE-cCCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcC---CcEE
Q psy2801 16 RGVFSML-GAVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYG---WKNI 87 (126)
Q Consensus 16 ~gv~AIi-Gp~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~---W~~v 87 (126)
+++-+|| .|..... ...+.. +...+||.|......+ ......+.-.+..+. ++..++.+...| -+++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I 131 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKE-AKDAEIPVFLLDRSID----VKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNV 131 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHH-HHHTTCCEEEESSCCC----CSCGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEE
T ss_pred cCCCEEEEeCCChhhHHHHHHH-HHHCCCCEEEecCCCC----CCCccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeE
Confidence 4554444 3443322 334443 4457899998765422 111111234566663 555555555555 7899
Q ss_pred EEEEeCC
Q psy2801 88 IYMYDSH 94 (126)
Q Consensus 88 ~iiY~dd 94 (126)
+++....
T Consensus 132 ~~i~~~~ 138 (306)
T 2vk2_A 132 VELQGTV 138 (306)
T ss_dssp EEEECST
T ss_pred EEEEcCC
Confidence 9998653
No 81
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.13 E-value=23 Score=25.36 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=27.9
Q ss_pred HHhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 9 SVCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 9 ~~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
..|.....-.++|.||..+--+-..+.++..+++|+|+.
T Consensus 22 ~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 22 YACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred HHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 455443333678889988866666677778899999975
No 82
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=38.56 E-value=85 Score=22.83 Aligned_cols=71 Identities=18% Similarity=0.083 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEE
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY 91 (126)
.+++-+||..........+..+ ...+||.|......+ . . .+ -.+.++. ++..++.+...|-++++++.
T Consensus 117 ~~~vdgiI~~~~~~~~~~~~~l-~~~~iPvV~~~~~~~----~-~--~~-~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 187 (332)
T 2o20_A 117 SKQVDGIVYMGSSLDEKIRTSL-KNSRTPVVLVGTIDG----D-K--EI-PSVNIDYHLAAYQSTKKLIDSGNKKIAYIM 187 (332)
T ss_dssp HTTCSEEEECSSCCCHHHHHHH-HHHCCCEEEESCCCT----T-S--CS-CEEECCHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred hCCCCEEEEeCCCCCHHHHHHH-HhCCCCEEEEccccC----C-C--CC-CEEEeChHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4556555432221223344444 356899998765421 1 1 11 2455663 55566666667999999997
Q ss_pred eCC
Q psy2801 92 DSH 94 (126)
Q Consensus 92 ~dd 94 (126)
.+.
T Consensus 188 ~~~ 190 (332)
T 2o20_A 188 GSL 190 (332)
T ss_dssp SCT
T ss_pred CCc
Confidence 654
No 83
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=37.46 E-value=1e+02 Score=21.52 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=33.9
Q ss_pred HHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCC
Q psy2801 31 DTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSH 94 (126)
Q Consensus 31 ~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd 94 (126)
..+..+ ...+||.|......+ . ...-.+..+. ++.+++.+...|-++++++..+.
T Consensus 71 ~~~~~l-~~~~iPvV~~~~~~~----~----~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~ 128 (277)
T 3cs3_A 71 KEIEKF-AERGHSIVVLDRTTE----H----RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPE 128 (277)
T ss_dssp HHHHHH-HHTTCEEEESSSCCC----S----TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCT
T ss_pred HHHHHH-HhcCCCEEEEecCCC----C----CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCc
Confidence 444443 457999998754321 1 1123455663 55556666667999999998764
No 84
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=36.29 E-value=1e+02 Score=21.87 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=33.1
Q ss_pred hhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCC
Q psy2801 36 YSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHD 95 (126)
Q Consensus 36 i~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~ 95 (126)
.+...+||.|......+ . ...-...+..+. ++..++.+...|-++++++....+
T Consensus 86 ~l~~~~iPvV~i~~~~~----~--~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~ 142 (295)
T 3hcw_A 86 MLIDESMPFIVIGKPTS----D--IDHQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGN 142 (295)
T ss_dssp HHHHTTCCEEEESCCCS----S--GGGGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSC
T ss_pred HHHhCCCCEEEECCCCc----c--ccCCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCcc
Confidence 35567999998765422 1 100123445552 555666666679999999987643
No 85
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=35.82 E-value=56 Score=23.21 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=34.1
Q ss_pred EEeeCCHHHHHHHHHHHcCCcE--EEEEEeCCCcccc---CCChHHHHHHHHh
Q psy2801 65 ISMRPDYHQAIIDTVKYYGWKN--IIYMYDSHDEMFY---EGSPEFLRVFCHE 112 (126)
Q Consensus 65 ~~~~P~~~~Ai~dli~~f~W~~--v~iiY~dd~gl~~---~~~l~~l~~~l~~ 112 (126)
+++.|..+.+++.+|...+|.. ++.|..||.=+.. ....+.+...+.+
T Consensus 122 IkT~PG~A~~vA~~ID~~~~~e~IlGTIAGDDTIlVi~r~~~~a~~l~~~l~~ 174 (180)
T 3v4g_A 122 IHTGPGAAQLIARMLDSLGKSEGILGVVAGDDTIFITPTLTITTEQLFKSVCE 174 (180)
T ss_dssp EEESTTCHHHHHHHHHHHCGGGTEEEEEECSSEEEEEECTTSCHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHhCCCCCCeEEEEecCCEEEEEeCCHHHHHHHHHHHHH
Confidence 6666888999999999998886 7888887763322 3445555555544
No 86
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=34.40 E-value=1.2e+02 Score=21.40 Aligned_cols=70 Identities=9% Similarity=-0.011 Sum_probs=40.8
Q ss_pred CCcEEEE-cCCCcc-hHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHc--CCcEEE
Q psy2801 16 RGVFSML-GAVSPD-SFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYY--GWKNII 88 (126)
Q Consensus 16 ~gv~AIi-Gp~~s~-~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f--~W~~v~ 88 (126)
+++-+|| .|.... ....++. +...+||.|......+ . ....-.+.++. ++.+++.+... |=++++
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~---~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~ 131 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINK-AVDAGIPIVLFDSGAP----D---SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVA 131 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHH-HHHTTCCEEEESSCCT----T---SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHH-HHHCCCcEEEECCCCC----C---CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 3444433 444433 3344444 4557999998765432 1 11223455663 66666666666 999999
Q ss_pred EEEeC
Q psy2801 89 YMYDS 93 (126)
Q Consensus 89 iiY~d 93 (126)
++...
T Consensus 132 ~i~~~ 136 (305)
T 3g1w_A 132 VITLP 136 (305)
T ss_dssp EEECT
T ss_pred EEeCC
Confidence 99854
No 87
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=34.35 E-value=43 Score=23.56 Aligned_cols=49 Identities=12% Similarity=0.000 Sum_probs=30.7
Q ss_pred CCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEEEeCCC
Q psy2801 40 FQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYMYDSHD 95 (126)
Q Consensus 40 ~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~iiY~dd~ 95 (126)
.+||.|......+ .... + -.+.++ .++.+++.+...|-++++++.....
T Consensus 78 ~~iPvV~~~~~~~----~~~~--~-~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~ 129 (280)
T 3gyb_A 78 SLPPFVIAGTRIT----QAST--H-DSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSG 129 (280)
T ss_dssp -CCCEEEESCCCS----SSCS--T-TEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSH
T ss_pred cCCCEEEECCCCC----CCCC--C-CEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCc
Confidence 8999998765531 1111 1 234455 2666777777779999999977543
No 88
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=34.29 E-value=31 Score=24.81 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=25.8
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|+||+.+--+-...-++..++++++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 489999999998888888888888998885
No 89
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.09 E-value=82 Score=22.16 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=31.6
Q ss_pred HHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHH-c-CCc-----EEEEEEeCCC
Q psy2801 31 DTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKY-Y-GWK-----NIIYMYDSHD 95 (126)
Q Consensus 31 ~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~-f-~W~-----~v~iiY~dd~ 95 (126)
..+.. +...+||.|......+ . ....-.+.++. ++..++.+.. + |=+ +++++....+
T Consensus 80 ~~~~~-~~~~~iPvV~~~~~~~----~---~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~ 146 (293)
T 3l6u_A 80 SAIEE-AKKAGIPVFAIDRMIR----S---DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTAN 146 (293)
T ss_dssp HHHHH-HHHTTCCEEEESSCCC----C---TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTT
T ss_pred HHHHH-HHHcCCCEEEecCCCC----C---CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCC
Confidence 44444 4556999998765432 1 11223455552 4444444444 4 444 9999976543
No 90
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=33.12 E-value=29 Score=22.85 Aligned_cols=32 Identities=3% Similarity=0.118 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 16 RGVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 16 ~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+.+++|.|+..+--+.....++..+++|++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45788999887766656566677789999964
No 91
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=33.12 E-value=34 Score=23.49 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=25.1
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
-+++|.|+..+.-+.....++..+++|++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3788999988877777777788899999963
No 92
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=32.15 E-value=52 Score=22.31 Aligned_cols=28 Identities=7% Similarity=0.411 Sum_probs=21.2
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
+++|+||..+--+-....+++ ++.|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 688999988865555566655 8999995
No 93
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.69 E-value=1.3e+02 Score=20.97 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCC
Q psy2801 31 DTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHD 95 (126)
Q Consensus 31 ~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~ 95 (126)
..++. +...+||.|......+ . . .+ -.+..+. ++..++.+...|-++++++...++
T Consensus 90 ~~~~~-~~~~~iPvV~~~~~~~----~-~--~~-~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 148 (298)
T 3tb6_A 90 GYYLN-LEKNGIPFAMINASYA----E-L--AA-PSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADD 148 (298)
T ss_dssp HHHHH-HHHTTCCEEEESSCCT----T-C--SS-CEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSS
T ss_pred HHHHH-HHhcCCCEEEEecCcC----C-C--CC-CEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCC
Confidence 34443 5567999998765432 1 1 11 2344552 666777777789999999987554
No 94
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=31.53 E-value=35 Score=22.35 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=24.3
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|+||..+--+-...-+++.++.|++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 378999999997777777778878888885
No 95
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=31.36 E-value=28 Score=26.98 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=26.4
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
...+++|.||+.+.-+.....++..++.+.|+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 34578899999998887888888888888875
No 96
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.21 E-value=1.4e+02 Score=21.04 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=39.3
Q ss_pred hCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 37 SNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 37 ~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
+...+||.|......+ . . .+ -.+..+. ++..++.+...|-++++++....+......-.+-+++.+.+
T Consensus 85 l~~~~iPvV~i~~~~~----~-~--~~-~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~ 155 (288)
T 3gv0_A 85 MTERNMPFVTHGRSDM----G-I--EH-AFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRD 155 (288)
T ss_dssp HHHTTCCEEEESCCCS----S-C--CC-EEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCEEEECCcCC----C-C--CC-cEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHH
Confidence 4567999998765422 1 1 11 2345563 66666666677999999997654432222223344444544
No 97
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=30.58 E-value=27 Score=25.57 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=24.3
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeeec
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITPW 48 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~~ 48 (126)
-++|+||..+--+-..+.++..+++|+|+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~g 40 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTG 40 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeech
Confidence 4788988887666666778888999999853
No 98
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=30.34 E-value=26 Score=23.26 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=22.9
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.+++|.|+..+--+-....++..+++|+|+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 3678888888765555566777788999963
No 99
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=29.96 E-value=1.5e+02 Score=21.06 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=47.5
Q ss_pred CCCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEE
Q psy2801 15 SRGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYM 90 (126)
Q Consensus 15 ~~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~ii 90 (126)
.+++-+|| -|..... ..+. .+...+||.|....... . ...-.+..+. ++..++.+...|-++++++
T Consensus 81 ~~~vdgiIi~~~~~~~-~~~~-~l~~~~iPvV~i~~~~~----~----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 150 (305)
T 3huu_A 81 SKSVDGFILLYSLKDD-PIEH-LLNEFKVPYLIVGKSLN----Y----ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFL 150 (305)
T ss_dssp TTCCSEEEESSCBTTC-HHHH-HHHHTTCCEEEESCCCS----S----TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCCEEEEeCCcCCc-HHHH-HHHHcCCCEEEECCCCc----c----cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 44554443 3333222 3333 35567999998765421 1 1123455663 6666666667799999999
Q ss_pred EeCCCccccCCChHHHHHHHHh
Q psy2801 91 YDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 91 Y~dd~gl~~~~~l~~l~~~l~~ 112 (126)
....+......-.+-+++.+.+
T Consensus 151 ~~~~~~~~~~~R~~Gf~~~l~~ 172 (305)
T 3huu_A 151 QESGHYAVTEDRSVGFKQYCDD 172 (305)
T ss_dssp EESSCBHHHHHHHHHHHHHHHH
T ss_pred cCCcccchhHHHHHHHHHHHHH
Confidence 8765432222223444444544
No 100
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=29.89 E-value=38 Score=23.10 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=26.4
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.+++|+|+..+--+-....++..++.|+++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4789999999987777888888899999963
No 101
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=29.57 E-value=93 Score=21.68 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=31.0
Q ss_pred HHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCC
Q psy2801 31 DTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHD 95 (126)
Q Consensus 31 ~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~ 95 (126)
..+...+...+||.|......+ . . . .+.++. ++..++.+...|-++++++....+
T Consensus 76 ~~~~~~l~~~~iPvV~~~~~~~----~--~-~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~ 133 (277)
T 3e61_A 76 NIIENTLTDHHIPFVFIDRINN----E--H-N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLL 133 (277)
T ss_dssp HHHHHHHHHC-CCEEEGGGCC-------------------HHHHHHHHHHHHHHTTCCSEEEEESCTT
T ss_pred HHHHHHHHcCCCCEEEEeccCC----C--C-C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCC
Confidence 3344145567999998765432 1 1 1 556663 666677677789999999986543
No 102
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=29.41 E-value=33 Score=22.26 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=23.8
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+++|.|+..+--+-....++..++.|+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 678899988866666677788888999863
No 103
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=29.29 E-value=27 Score=23.11 Aligned_cols=32 Identities=6% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
...+++|+|+..+--+-....+++.++.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 33478999999886666666666667888886
No 104
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=28.79 E-value=44 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.230 Sum_probs=22.5
Q ss_pred EEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 19 FSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 19 ~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
++|.||..+--+-..+.++..+++|+|+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 67888888866666677778899999964
No 105
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=28.70 E-value=1.3e+02 Score=21.20 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=41.1
Q ss_pred CCcEEE-EcCCCcc-hHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcC-----Cc
Q psy2801 16 RGVFSM-LGAVSPD-SFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYG-----WK 85 (126)
Q Consensus 16 ~gv~AI-iGp~~s~-~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~-----W~ 85 (126)
+++-+| +.|.... ....+.. +. .+||.|......+.. ........-.+.++. ++..++.+...+ =+
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~-~~-~~iPvV~~~~~~~~~--~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~ 137 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKS-WV-GNTPVFATVNQLDLD--EEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKT 137 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHH-HT-TTSCEEECSSCCCCC--TTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCE
T ss_pred cCCCEEEEeCCChhHHHHHHHH-Hc-CCCCEEEecCCCccc--ccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCC
Confidence 344343 3444443 2334454 44 899999874432100 111223445566773 666666666677 78
Q ss_pred EEEEEEeCC
Q psy2801 86 NIIYMYDSH 94 (126)
Q Consensus 86 ~v~iiY~dd 94 (126)
+++++....
T Consensus 138 ~i~~i~~~~ 146 (304)
T 3o1i_D 138 NIALLLGPR 146 (304)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999996543
No 106
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=28.31 E-value=42 Score=22.91 Aligned_cols=29 Identities=7% Similarity=0.201 Sum_probs=23.5
Q ss_pred cEEEEcCCCcchHHHHHHhhCcC-CCCeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTF-QMPFIT 46 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~-~IP~Is 46 (126)
+++|.|++.+--+-....+++.+ +++++.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 78999998887776777777777 899885
No 107
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=27.80 E-value=37 Score=22.61 Aligned_cols=30 Identities=3% Similarity=0.051 Sum_probs=23.0
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+++|.|+..+--+..-..++..+++|+|+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 678899888766666667777789999963
No 108
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=27.46 E-value=81 Score=22.92 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=32.1
Q ss_pred hCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCC
Q psy2801 37 SNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHD 95 (126)
Q Consensus 37 ~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~ 95 (126)
+...+||.|......+ . .+ -.+.++. ++..++.+...|-+++++|....+
T Consensus 131 l~~~~iPvV~~~~~~~------~--~~-~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~ 183 (330)
T 3ctp_A 131 YANIDIPVVAFENHIL------D--NI-ITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEV 183 (330)
T ss_dssp GTTCCSCEEEESSCCC------T--TS-CEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHhcCCCEEEEeccCC------C--CC-CEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence 4567999998765321 1 12 2345563 555666666679999999987643
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=27.43 E-value=33 Score=22.74 Aligned_cols=30 Identities=7% Similarity=0.228 Sum_probs=24.6
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.++|+|+..+--+-....++..+++|+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 688999998877767777888889999964
No 110
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=27.19 E-value=39 Score=23.07 Aligned_cols=30 Identities=10% Similarity=0.178 Sum_probs=23.3
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|+||..+--+-....+++.++.+++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 489999999986666667777767888875
No 111
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=27.08 E-value=43 Score=22.67 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=23.8
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+++|.|+..+--+-....++..+++|+|+.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 678889888866666677788899999973
No 112
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=26.95 E-value=1.4e+02 Score=21.99 Aligned_cols=70 Identities=10% Similarity=-0.007 Sum_probs=37.2
Q ss_pred CCcEEEE-cCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCC---HHHHHHHHHHHcCCcEEEEEE
Q psy2801 16 RGVFSML-GAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPD---YHQAIIDTVKYYGWKNIIYMY 91 (126)
Q Consensus 16 ~gv~AIi-Gp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~---~~~Ai~dli~~f~W~~v~iiY 91 (126)
+++-+|| .+.... ...+.. +...+||.|......+ .. ..+ -.+..+ -++..++.+...|-+++++|.
T Consensus 121 ~~vdgiI~~~~~~~-~~~~~~-l~~~~iPvV~i~~~~~----~~--~~~-~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 191 (348)
T 3bil_A 121 HGVDGIICVPNEEC-ANQLED-LQKQGMPVVLVDRELP----GD--STI-PTATSNPQPGIAAAVELLAHNNALPIGYLS 191 (348)
T ss_dssp TTCSCEEECCCGGG-HHHHHH-HHHC-CCEEEESSCCS----CC---CC-CEEEEECHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCCEEEEeCCCCC-hHHHHH-HHhCCCCEEEEcccCC----CC--CCC-CEEEeChHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4554443 333322 344444 3457999998765421 10 111 134444 256666666667999999997
Q ss_pred eCC
Q psy2801 92 DSH 94 (126)
Q Consensus 92 ~dd 94 (126)
...
T Consensus 192 ~~~ 194 (348)
T 3bil_A 192 GPM 194 (348)
T ss_dssp CCT
T ss_pred CCC
Confidence 653
No 113
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.52 E-value=1.5e+02 Score=21.14 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHHHHc--CCcEEEEEEeCCC
Q psy2801 72 HQAIIDTVKYY--GWKNIIYMYDSHD 95 (126)
Q Consensus 72 ~~Ai~dli~~f--~W~~v~iiY~dd~ 95 (126)
.+..++++... |-|++++|+...+
T Consensus 126 ~~~~~~~l~~~~Pg~~~I~~i~~~~~ 151 (302)
T 2qh8_A 126 VEQHVELIKEILPNVKSIGVVYNPGE 151 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECTTC
T ss_pred HHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 44555666666 9999999997654
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.47 E-value=45 Score=22.10 Aligned_cols=31 Identities=3% Similarity=-0.001 Sum_probs=25.0
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
..+.++|+..+--+.....++..++.|+++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4678999988877777777888889999964
No 115
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=26.19 E-value=1.2e+02 Score=23.73 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=30.1
Q ss_pred HHHHHHHHHHc-CCcEEEEEEeCCCccccCCChHHHHHHHHhh
Q psy2801 72 HQAIIDTVKYY-GWKNIIYMYDSHDEMFYEGSPEFLRVFCHEK 113 (126)
Q Consensus 72 ~~Ai~dli~~f-~W~~v~iiY~dd~gl~~~~~l~~l~~~l~~~ 113 (126)
-++++++++.. +|.+|..+-.+| ..+++...|+.+|...
T Consensus 160 l~ll~~aL~~~~~w~yfilLSgsD---~PLkt~~~i~~~l~~~ 199 (391)
T 2gak_A 160 LNCMKDLYRMNANWKYLINLCGMD---FPIKTNLEIVRKLKCS 199 (391)
T ss_dssp HHHHHHHHHHCSCCCEEEEEETTC---EESSCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCEEEEecCCC---ccccCHHHHHHHHHhc
Confidence 56778888765 999999996665 4567788888888753
No 116
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=25.88 E-value=61 Score=22.20 Aligned_cols=29 Identities=7% Similarity=0.342 Sum_probs=21.4
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+++|.|+..+--+-....++. +++|+|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 688889888865555555555 89999964
No 117
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=25.58 E-value=55 Score=22.11 Aligned_cols=29 Identities=3% Similarity=0.102 Sum_probs=22.0
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+++|.|+..+--+-....+++ +++|++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 688999888866666666666 89999963
No 118
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=25.35 E-value=36 Score=24.00 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=24.3
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|+|+..+.-+.....++..+++|+++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 378999999887776767777778999996
No 119
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=24.95 E-value=44 Score=22.86 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=22.2
Q ss_pred EEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 19 FSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 19 ~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
++|.||..+--+-..+.++..+++|+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 67888888866656667778889999964
No 120
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=24.23 E-value=55 Score=20.93 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=22.4
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+++|.||..+--+-....+ ..++.|+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 6788898888666555666 8899999974
No 121
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=23.98 E-value=1e+02 Score=20.91 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=25.4
Q ss_pred EEeeCCHHHHHHHHHHHcCCcEEE-EEEeCCCccc
Q psy2801 65 ISMRPDYHQAIIDTVKYYGWKNII-YMYDSHDEMF 98 (126)
Q Consensus 65 ~~~~P~~~~Ai~dli~~f~W~~v~-iiY~dd~gl~ 98 (126)
+++.|..+++++.+|.+.+|..+. .|..||.=+.
T Consensus 96 ikT~PG~A~~va~~iD~~~~~eIlGTIAGDDTIlv 130 (149)
T 1b4a_A 96 LRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLI 130 (149)
T ss_dssp EEESTTCHHHHHHHHHHHTCTTEEEEEECSSEEEE
T ss_pred EEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEE
Confidence 666688999999999999999864 4555444333
No 122
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=23.98 E-value=46 Score=23.97 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=25.1
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.+++|+||..+--+.....++..++.++|+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 3688999999977777777888889999964
No 123
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=23.93 E-value=53 Score=21.72 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=26.3
Q ss_pred CCCcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 15 SRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 15 ~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
...++.|.|+..+--+.....++..++.++++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345788999998877777788888889999964
No 124
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=23.56 E-value=40 Score=24.51 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=25.7
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
-+++|.||+.+--+.....++..+++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3789999999977777788888889999863
No 125
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=23.22 E-value=45 Score=22.20 Aligned_cols=31 Identities=3% Similarity=0.145 Sum_probs=24.1
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.+++|.|+..+--+-....++..++.|+++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4788889888866666677777889999963
No 126
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=22.85 E-value=36 Score=21.46 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 71 YHQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 71 ~~~Ai~dli~~f~W~~v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
+...+.+|+.+|||...+--- +-.+....+++.+=..||++
T Consensus 17 LE~ilt~Lv~~YGW~~L~~~i-~I~CF~~~PSikSSLKFLRK 57 (88)
T 2jvw_A 17 LQKLLTELVEHYGWEELSYMV-NINCFKKDPSIKSSLKFLRK 57 (88)
T ss_dssp HHHHHHHHHHHTCHHHHHHHT-TSSSTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHhhc-ccccCCCCCchHHHHHHHhc
Confidence 578899999999998654210 11355556777776666664
No 127
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=22.79 E-value=69 Score=21.35 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=21.3
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
-+++|.|+..+--+.....++.. ++|+|..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 36889998887555555555555 9999953
No 128
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=22.76 E-value=88 Score=19.64 Aligned_cols=69 Identities=3% Similarity=-0.037 Sum_probs=42.9
Q ss_pred ccCCCcEEEEcCCCcchHHHH-HHhhCcCC---CCeeeecCCCCCCCCCCCCCCceEEeeCCHHHHHHHHHHHcCCcEEE
Q psy2801 13 QFSRGVFSMLGAVSPDSFDTF-HSYSNTFQ---MPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAIIDTVKYYGWKNII 88 (126)
Q Consensus 13 ~~~~gv~AIiGp~~s~~~~~v-~si~~~~~---IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~~~Ai~dli~~f~W~~v~ 88 (126)
......+.+++...+..+..+ ..+++..+ +++....-. ..|+-..+..+|.+.+||+.|=
T Consensus 21 ~i~~~~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid----------------~~~~~~~~~~~l~~~~g~~tvP 84 (118)
T 3c1r_A 21 LIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLN----------------DMKEGADIQAALYEINGQRTVP 84 (118)
T ss_dssp HHHHSSEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGG----------------GSTTHHHHHHHHHHHHSCCSSC
T ss_pred HHccCcEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECc----------------cCCChHHHHHHHHHHhCCCCcC
Confidence 333445778888888888777 88888888 444432211 0122233445566678999987
Q ss_pred EEEeCCCcc
Q psy2801 89 YMYDSHDEM 97 (126)
Q Consensus 89 iiY~dd~gl 97 (126)
.|+-+++-+
T Consensus 85 ~vfi~g~~i 93 (118)
T 3c1r_A 85 NIYINGKHI 93 (118)
T ss_dssp EEEETTEEE
T ss_pred EEEECCEEE
Confidence 777766533
No 129
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=22.49 E-value=1.6e+02 Score=18.72 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=38.3
Q ss_pred CceEEeeCC-HHHHHHHHHHHcC-CcEEEEEEeCCC--ccccCCChHHHHHHHHhh
Q psy2801 62 DYAISMRPD-YHQAIIDTVKYYG-WKNIIYMYDSHD--EMFYEGSPEFLRVFCHEK 113 (126)
Q Consensus 62 ~f~~~~~P~-~~~Ai~dli~~f~-W~~v~iiY~dd~--gl~~~~~l~~l~~~l~~~ 113 (126)
..-+.+.|+ +.+.+.||+..|+ =|.++++++=.. -.....++..+..++.++
T Consensus 45 TlVfyesp~Rl~~~l~~L~~~~g~~~~v~v~relTk~~E~~~rgtl~el~~~~~~~ 100 (115)
T 3ffy_A 45 TMVFYESPHRLLKTLTQFAEYFGPERQVSVSREISKIHEETVRGTLSELIEHFTAT 100 (115)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHCTTCEEEEEEESSSSCEEEEEEEHHHHHHHHHHS
T ss_pred eEEEEechHHHHHHHHHHHHhcCCCCEEEeeeccCCCceEEEEeeHHHHHHHHHhc
Confidence 455777787 6888899999997 899999998542 223345677888887664
No 130
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=22.38 E-value=51 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=24.7
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|+||..+--+-.+..++..++++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 489999999998777888888777777775
No 131
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=22.30 E-value=54 Score=21.34 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=23.5
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.+++|.|+..+--+.....++..+++|+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3678899888766666677777788999963
No 132
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.11 E-value=2.1e+02 Score=19.99 Aligned_cols=66 Identities=5% Similarity=-0.130 Sum_probs=37.8
Q ss_pred hCcCCCCeeeecCC-CCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCCccccCCChHHHHHHHHh
Q psy2801 37 SNTFQMPFITPWFP-EKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHE 112 (126)
Q Consensus 37 ~~~~~IP~Is~~~~-~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~gl~~~~~l~~l~~~l~~ 112 (126)
+...+||.|..... .+ ...+ .+.++. ++..++.+. .|-++++++....+......-.+-+++.+.+
T Consensus 81 ~~~~~iPvV~~~~~~~~-------~~~~--~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~ 150 (277)
T 3hs3_A 81 NFHLNTPLVMYDSANIN-------DDIV--RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASK 150 (277)
T ss_dssp TCCCSSCEEEESCCCCC-------SSSE--EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCEEEEcccccC-------CCCE--EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence 45678999987654 22 1123 666774 555555555 7999999998764322222223334444444
No 133
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.11 E-value=2.1e+02 Score=20.01 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCCcEEE-EcCCCcch-HHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHc-C-CcEE
Q psy2801 15 SRGVFSM-LGAVSPDS-FDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYY-G-WKNI 87 (126)
Q Consensus 15 ~~gv~AI-iGp~~s~~-~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f-~-W~~v 87 (126)
++++-+| +.|..... ...++. +...+||.|......+ . ....-.+.++. ++..++.+... | =+++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~----~---~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I 126 (283)
T 2ioy_A 55 QQKVDVLLINPVDSDAVVTAIKE-ANSKNIPVITIDRSAN----G---GDVVCHIASDNVKGGEMAAEFIAKALKGKGNV 126 (283)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHH-HHHTTCCEEEESSCCS----S---SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HcCCCEEEEeCCchhhhHHHHHH-HHHCCCeEEEecCCCC----C---cceeEEEecChHHHHHHHHHHHHHHcCCCceE
Confidence 4455443 34544332 234444 4567999998765321 1 11122345562 44444544444 5 8999
Q ss_pred EEEEeCC
Q psy2801 88 IYMYDSH 94 (126)
Q Consensus 88 ~iiY~dd 94 (126)
+++....
T Consensus 127 ~~i~g~~ 133 (283)
T 2ioy_A 127 VELEGIP 133 (283)
T ss_dssp EEEECCT
T ss_pred EEEECCC
Confidence 9998653
No 134
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=21.85 E-value=1.8e+02 Score=21.94 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=35.0
Q ss_pred HHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCC
Q psy2801 34 HSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSH 94 (126)
Q Consensus 34 ~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd 94 (126)
...+...+||.|......+ ......-.-.+..+. ++..++.+...|-++++++....
T Consensus 90 ~~~l~~~~iPvV~i~~~~~----~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~ 149 (412)
T 4fe7_A 90 EQALADVDVPIVGVGGSYH----LAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPE 149 (412)
T ss_dssp HHHHTTCCSCEEEEEECCS----SGGGSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred HHHHhhCCCCEEEecCCcc----ccccCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccc
Confidence 4456778999997665421 100011223455563 66666777778999999997654
No 135
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=21.15 E-value=72 Score=19.85 Aligned_cols=69 Identities=4% Similarity=-0.008 Sum_probs=44.4
Q ss_pred HhhccCCCcEEEEcCCCcchHHHHHHhhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCHHHHHHH-HHHHcCCcEEE
Q psy2801 10 VCNQFSRGVFSMLGAVSPDSFDTFHSYSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDYHQAIID-TVKYYGWKNII 88 (126)
Q Consensus 10 ~C~~~~~gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~~~Ai~d-li~~f~W~~v~ 88 (126)
+-+..+.+-+.|++-..+.-+..+..+++..++|+-...-.. .++ ..++.+ +.+..||+.|=
T Consensus 10 ~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~----------------~~~-~~~~~~~l~~~~g~~tvP 72 (114)
T 3h8q_A 10 LVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQ----------------VDD-GARVQEVLSEITNQKTVP 72 (114)
T ss_dssp HHHHHHHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTT----------------STT-HHHHHHHHHHHHSCCSSC
T ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecC----------------CCC-hHHHHHHHHHHhCCCccC
Confidence 334444556778999999999999999999998864432110 122 123323 34567999996
Q ss_pred EEEeCCC
Q psy2801 89 YMYDSHD 95 (126)
Q Consensus 89 iiY~dd~ 95 (126)
.++-+++
T Consensus 73 ~vfi~g~ 79 (114)
T 3h8q_A 73 NIFVNKV 79 (114)
T ss_dssp EEEETTE
T ss_pred EEEECCE
Confidence 6666665
No 136
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=20.75 E-value=51 Score=25.57 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=25.0
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|.||+.+.-+.....++..+++++|+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis 37 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIIS 37 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceec
Confidence 378999999997777778888888888886
No 137
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=20.63 E-value=1.8e+02 Score=21.24 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCCceEEeeCC-HHHHHHHHHH---HcCCcEEEEEEeCCCccccCCChHHHHHHHHhhc
Q psy2801 60 FLDYAISMRPD-YHQAIIDTVK---YYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKL 114 (126)
Q Consensus 60 ~~~f~~~~~P~-~~~Ai~dli~---~f~W~~v~iiY~dd~gl~~~~~l~~l~~~l~~~~ 114 (126)
..+-++++.|+ +...+.|+++ ..|+|++.+|-. ..|.. ++...+.|+++.
T Consensus 83 ~fPGTisl~~~tl~~~l~di~~sl~~~G~rrlvivNg-HGGN~----l~~a~~~l~~~~ 136 (254)
T 3lub_A 83 ELPFCIHTRYATQQAILEDIVSSLHVQGFRKLLILSG-HGGNN----FKGMIRDLAFEY 136 (254)
T ss_dssp TSTTCCBCCHHHHHHHHHHHHHHHHHTTCCEEEEEES-CTTCC----CHHHHHHHHHHC
T ss_pred CcCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEeC-CchHH----HHHHHHHHHHHC
Confidence 34567888888 4555566655 479999999833 22432 777777777775
No 138
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=20.51 E-value=44 Score=22.03 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=22.0
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCC-----CCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQ-----MPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~-----IP~Is~ 47 (126)
.+++|.|+..+--+-....++..++ +|+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 4678889888865555566666565 888874
No 139
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.44 E-value=2.3e+02 Score=19.92 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=33.7
Q ss_pred hhCcCCCCeeeecCCCCCCCCCCCCCCceEEeeCCH---HHHHHHHHHHcCCcEEEEEEeCCC
Q psy2801 36 YSNTFQMPFITPWFPEKVLAPSSGFLDYAISMRPDY---HQAIIDTVKYYGWKNIIYMYDSHD 95 (126)
Q Consensus 36 i~~~~~IP~Is~~~~~~~~~~~~~~~~f~~~~~P~~---~~Ai~dli~~f~W~~v~iiY~dd~ 95 (126)
.+...+||.|....... . . .+ -.+..+. ++..++.+...|-++++++....+
T Consensus 83 ~l~~~~iPvV~~~~~~~----~-~--~~-~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~ 137 (294)
T 3qk7_A 83 YLQKQNFPFLALGRSHL----P-K--PY-AWFDFDNHAGASLAVKRLLELGHQRIAFVSTDAR 137 (294)
T ss_dssp HHHHTTCCEEEESCCCC----S-S--CC-EEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHhCCCCEEEECCCCC----C-C--CC-CEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcc
Confidence 35567999998765421 1 1 12 2355563 666666666679999999987654
No 140
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=20.37 E-value=49 Score=22.08 Aligned_cols=31 Identities=3% Similarity=0.178 Sum_probs=23.5
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.+++|.|+..+--+-....++..+++|+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4788899888866666677777788999963
No 141
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=20.36 E-value=74 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=26.2
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
+++|+||+.+--+.....++..++.++|+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~ 71 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINS 71 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcc
Confidence 789999999988888888999999998863
No 142
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=20.25 E-value=63 Score=21.87 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.2
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFIT 46 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is 46 (126)
.+++|.|+..+--+-....++..++.++|+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 378999999886666667777778899996
No 143
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=20.14 E-value=62 Score=22.42 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=25.0
Q ss_pred CcEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 17 GVFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 17 gv~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
..++|.|+..+--+-....++..++.|+|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3678889988877777788888899999964
No 144
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.09 E-value=50 Score=21.82 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=22.7
Q ss_pred cEEEEcCCCcchHHHHHHhhCcCCCCeeee
Q psy2801 18 VFSMLGAVSPDSFDTFHSYSNTFQMPFITP 47 (126)
Q Consensus 18 v~AIiGp~~s~~~~~v~si~~~~~IP~Is~ 47 (126)
.+++.|+..+--+-....++..++.|+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 577888888866666677777788999964
Done!