RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2801
         (126 letters)



>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
           {Escherichia coli [TaxId: 562]}
          Length = 216

 Score = 29.4 bits (65), Expect = 0.094
 Identities = 7/55 (12%), Positives = 17/55 (30%)

Query: 55  APSSGFLDYAISMRPDYHQAIIDTVKYYGWKNIIYMYDSHDEMFYEGSPEFLRVF 109
           AP+ G          +        + Y G     +++++ +  F E +       
Sbjct: 129 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEH 183


>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of
           bifunctional FAD synthetase {Thermotoga maritima [TaxId:
           2336]}
          Length = 157

 Score = 23.7 bits (50), Expect = 6.4
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 72  HQAIIDTVK----YYGWKNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNISVWNRNLCN 125
           HQ ++ T+K    +    ++IY      E F    P  L         +S + R +  
Sbjct: 14  HQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYARTVVL 71


>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 116

 Score = 23.1 bits (50), Expect = 8.5
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 85  KNIIYMYDSHDEMFYEGSPEFLRVFCHEKLNIS 117
           K+II  Y+++  + +   P  +        N  
Sbjct: 67  KSIICYYNTYQVVQFNRLPLVVSFIASSSANTG 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,096
Number of extensions: 23674
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 14
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.5 bits)