Query psy2802
Match_columns 74
No_of_seqs 114 out of 510
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 17:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 99.5 5.1E-14 1.8E-18 103.2 6.1 74 1-74 661-734 (823)
2 1pb7_A N-methyl-D-aspartate re 99.1 5.2E-11 1.8E-15 78.8 4.5 61 12-74 201-261 (292)
3 2rc8_A Glutamate [NMDA] recept 98.9 5E-10 1.7E-14 73.9 3.7 60 13-73 200-262 (294)
4 1yae_A Glutamate receptor, ion 98.9 1.2E-09 4.1E-14 72.3 5.3 59 12-73 203-261 (312)
5 3g3k_A Glutamate receptor, ion 98.9 6.6E-10 2.3E-14 71.0 3.8 69 2-73 159-227 (259)
6 2a5s_A N-methyl-D-aspartate re 98.9 1.9E-09 6.5E-14 70.8 4.6 59 15-74 193-254 (284)
7 2v3u_A Glutamate receptor delt 98.8 3.7E-09 1.3E-13 67.3 4.8 60 12-73 172-232 (265)
8 1mqi_A Glutamate receptor 2; G 98.8 1E-08 3.5E-13 65.5 5.5 62 10-73 167-230 (263)
9 1ii5_A SLR1257 protein; membra 98.3 1.2E-06 4E-11 54.2 5.5 61 12-73 139-200 (233)
10 4f3p_A Glutamine-binding perip 98.2 1.4E-06 4.8E-11 55.1 4.8 61 12-73 155-216 (249)
11 3k4u_A Binding component of AB 98.2 1.8E-06 6E-11 54.4 5.0 60 12-72 140-200 (245)
12 3i6v_A Periplasmic His/Glu/Gln 98.2 2.5E-06 8.4E-11 53.7 4.9 60 12-72 129-189 (232)
13 3hv1_A Polar amino acid ABC up 98.1 2.6E-06 8.9E-11 54.4 4.2 60 12-72 159-220 (268)
14 4gvo_A LMO2349 protein; struct 98.1 1.2E-06 4E-11 55.8 2.2 58 14-72 150-207 (243)
15 2pyy_A Ionotropic glutamate re 98.1 3.1E-06 1.1E-10 52.0 3.8 61 12-73 135-196 (228)
16 4h5g_A Amino acid ABC superfam 98.1 2.3E-06 8E-11 54.4 2.9 60 12-72 148-209 (243)
17 3del_B Arginine binding protei 98.0 8.3E-06 2.8E-10 51.0 5.2 59 12-72 142-204 (242)
18 3h7m_A Sensor protein; histidi 98.0 5.6E-06 1.9E-10 51.2 4.2 60 12-72 142-202 (234)
19 1wdn_A GLNBP, glutamine bindin 98.0 6.6E-06 2.3E-10 50.5 4.2 59 12-71 134-193 (226)
20 3mpk_A Virulence sensor protei 98.0 9.5E-06 3.3E-10 52.1 4.6 60 12-72 164-225 (267)
21 4dz1_A DALS D-alanine transpor 97.9 1.3E-05 4.4E-10 51.2 4.7 61 12-73 168-228 (259)
22 2vha_A Periplasmic binding tra 97.9 1.9E-05 6.6E-10 50.8 5.3 60 12-72 159-220 (287)
23 3tql_A Arginine-binding protei 97.9 8E-06 2.7E-10 50.1 3.4 60 12-72 135-200 (227)
24 3qax_A Probable ABC transporte 97.9 2E-05 7E-10 49.6 5.2 59 12-72 163-225 (268)
25 3kzg_A Arginine 3RD transport 97.9 5.5E-06 1.9E-10 51.8 2.6 59 12-71 135-201 (237)
26 4eq9_A ABC transporter substra 97.9 1.4E-05 4.9E-10 49.8 4.1 57 15-72 149-207 (246)
27 2yln_A Putative ABC transporte 97.8 2.4E-05 8.2E-10 50.9 4.4 59 13-72 188-249 (283)
28 2y7i_A STM4351; arginine-bindi 97.7 3.7E-05 1.3E-09 47.3 4.4 59 12-72 137-200 (229)
29 3kbr_A Cyclohexadienyl dehydra 97.7 1.7E-05 5.9E-10 49.4 2.0 56 12-69 150-207 (239)
30 2yjp_A Putative ABC transporte 97.7 5.9E-05 2E-09 49.1 4.5 59 12-72 189-248 (291)
31 4i62_A Amino acid ABC transpor 97.5 0.00011 3.8E-09 46.2 4.5 59 12-72 175-236 (269)
32 1lst_A Lysine, arginine, ornit 97.5 5.7E-05 1.9E-09 46.9 3.1 60 12-72 138-204 (239)
33 1xt8_A Putative amino-acid tra 97.5 5.4E-05 1.8E-09 49.0 3.0 59 12-72 178-237 (292)
34 2pvu_A ARTJ; basic amino acid 97.5 0.00018 6E-09 46.0 5.0 59 12-71 173-234 (272)
35 2iee_A ORF2, probable ABC tran 97.2 0.0002 6.7E-09 46.0 2.9 59 12-72 155-218 (271)
36 2q88_A EHUB, putative ABC tran 97.2 0.00024 8.3E-09 44.6 3.1 59 12-71 150-211 (257)
37 2v25_A Major cell-binding fact 97.0 0.00024 8.1E-09 44.3 1.7 56 12-71 177-232 (259)
38 3p7i_A PHND, subunit of alkylp 95.4 0.025 8.4E-07 38.1 4.7 57 14-71 163-222 (321)
39 3n5l_A Binding protein compone 94.9 0.027 9.1E-07 37.5 3.9 57 14-71 154-213 (310)
40 2ozz_A Hypothetical protein YH 92.3 0.19 6.5E-06 32.9 4.3 53 13-71 139-199 (231)
41 3v83_A Serotransferrin; iron b 84.3 1.5 5.3E-05 33.0 4.8 59 13-73 60-126 (698)
42 3ix1_A N-formyl-4-amino-5-amin 83.8 1.8 6.3E-05 27.6 4.5 57 15-73 42-98 (302)
43 3uif_A Sulfonate ABC transport 83.0 4 0.00014 26.8 6.0 55 17-74 57-112 (348)
44 3ksx_A Nitrate transport prote 82.4 5.9 0.0002 25.6 6.6 58 14-74 65-124 (324)
45 3qsl_A Putative exported prote 81.5 7.4 0.00025 24.8 6.8 58 14-73 71-130 (346)
46 1h45_A Lactoferrin; metal tran 80.5 2.7 9.2E-05 28.7 4.5 59 12-73 38-105 (334)
47 2f5x_A BUGD; periplasmic bindi 80.1 5.1 0.00017 26.8 5.8 34 12-46 169-202 (312)
48 2dvz_A BUGE, putative exported 79.5 5 0.00017 26.9 5.6 34 12-46 173-206 (314)
49 2d3i_A Ovotransferrin; aluminu 75.3 4.8 0.00016 30.2 4.9 59 13-73 38-104 (686)
50 1iej_A Ovotransferrin; iron, m 73.8 5.1 0.00018 27.3 4.4 58 13-73 38-104 (332)
51 3lr1_A Tungstate ABC transport 72.9 7 0.00024 25.3 4.8 59 12-73 38-96 (236)
52 2qpq_A Protein BUG27; alpha/be 72.4 8 0.00027 25.6 5.0 40 12-54 160-199 (301)
53 3mc2_A Inhibitor of carbonic a 71.2 5.1 0.00017 30.2 4.2 60 12-73 46-113 (687)
54 3un6_A Hypothetical protein sa 71.2 10 0.00034 24.7 5.3 57 14-73 89-145 (341)
55 2x26_A Periplasmic aliphatic s 69.4 18 0.00063 22.8 6.8 58 14-73 39-97 (308)
56 1ryo_A Serotransferrin; iron t 69.3 5.6 0.00019 27.0 3.8 60 12-73 40-107 (327)
57 1blf_A Lactoferrin; transferri 66.7 7.2 0.00025 29.3 4.2 59 13-73 38-104 (689)
58 1cb6_A Protein (lactoferrin); 65.6 7.7 0.00026 29.2 4.2 59 13-73 38-104 (691)
59 3tod_A Lactotransferrin; C-LOB 64.3 15 0.00052 25.2 5.2 37 13-53 32-68 (335)
60 3muq_A Uncharacterized conserv 63.5 14 0.00049 23.8 4.8 59 12-73 38-96 (237)
61 3ksx_A Nitrate transport prote 61.7 24 0.00082 22.6 5.6 51 16-67 166-216 (324)
62 3skp_A Serotransferrin; iron b 61.4 12 0.00042 25.7 4.3 56 13-72 33-100 (342)
63 4ddd_A Immunogenic protein; ss 59.6 25 0.00084 23.2 5.5 58 15-74 74-139 (327)
64 4esw_A Pyrimidine biosynthesis 57.3 22 0.00075 23.2 4.9 56 14-72 45-101 (342)
65 3l6g_A Betaine ABC transporter 56.2 21 0.0007 22.9 4.5 56 16-73 38-96 (256)
66 3tmg_A Glycine betaine, L-prol 55.9 20 0.0007 23.2 4.5 57 16-74 52-111 (280)
67 3un6_A Hypothetical protein sa 55.5 25 0.00084 22.8 4.9 33 16-49 190-222 (341)
68 3r26_A Molybdate-binding perip 52.2 39 0.0013 20.9 6.7 64 1-72 142-209 (237)
69 2qmw_A PDT, prephenate dehydra 52.1 25 0.00084 23.3 4.5 58 12-72 32-97 (267)
70 1atg_A MODA, periplasmic molyb 51.9 23 0.00078 20.7 4.0 57 14-73 33-92 (231)
71 3mc2_A Inhibitor of carbonic a 51.0 22 0.00076 26.8 4.5 53 13-69 370-440 (687)
72 3mwb_A Prephenate dehydratase; 50.9 32 0.0011 23.3 5.0 61 12-72 35-101 (313)
73 2x7q_A Ca3427, possible thiami 50.7 47 0.0016 21.3 5.9 53 19-73 57-112 (321)
74 2x26_A Periplasmic aliphatic s 50.3 44 0.0015 20.9 6.1 32 15-47 139-170 (308)
75 2d3i_A Ovotransferrin; aluminu 49.5 23 0.00077 26.6 4.3 56 13-72 373-442 (686)
76 3gzg_A Molybdate-binding perip 49.0 17 0.00059 23.1 3.3 59 13-72 55-114 (253)
77 1us5_A Putative GLUR0 ligand b 49.0 47 0.0016 20.9 5.5 58 15-74 58-124 (314)
78 4ehx_A Tetraacyldisaccharide 4 46.8 2.5 8.6E-05 28.5 -1.1 53 14-70 116-168 (315)
79 3v83_A Serotransferrin; iron b 45.5 34 0.0012 25.8 4.7 53 13-69 389-452 (698)
80 1blf_A Lactoferrin; transferri 42.8 39 0.0013 25.3 4.7 38 13-54 373-410 (689)
81 2rin_A Putative glycine betain 42.6 21 0.00071 23.3 3.0 55 16-71 43-100 (298)
82 2qmx_A Prephenate dehydratase; 40.4 54 0.0018 21.8 4.7 59 11-72 29-95 (283)
83 1cb6_A Protein (lactoferrin); 39.1 37 0.0013 25.5 4.1 37 13-53 373-409 (691)
84 3luy_A Probable chorismate mut 38.3 55 0.0019 22.3 4.6 58 12-72 41-106 (329)
85 1r9l_A Glycine betaine-binding 34.3 50 0.0017 21.6 3.8 55 16-71 45-102 (309)
86 4ecf_A ABC-type phosphate tran 33.9 39 0.0013 21.4 3.2 57 12-73 36-93 (264)
87 2b4l_A Glycine betaine-binding 31.7 1E+02 0.0034 19.9 4.9 52 18-71 203-257 (268)
88 4edp_A ABC transporter, substr 30.5 1E+02 0.0035 19.3 5.5 59 13-72 215-274 (351)
89 3cvg_A Putative metal binding 30.4 1E+02 0.0035 19.6 4.8 58 12-72 58-116 (294)
90 1ixh_A Phosphate-binding prote 30.3 97 0.0033 20.1 4.7 55 13-72 34-88 (321)
91 1tks_A 3,4-dihydroxy-2-butanon 29.8 18 0.00061 23.3 1.0 50 14-70 5-54 (204)
92 2pk8_A Uncharacterized protein 29.2 26 0.00089 20.1 1.5 15 29-43 78-92 (103)
93 3mio_A DHBP synthase, 3,4-dihy 26.9 17 0.00059 23.4 0.5 45 14-65 4-48 (206)
94 1k4i_A 3,4-dihydroxy-2-butanon 26.1 16 0.00055 24.0 0.3 45 14-65 12-56 (233)
95 2q5c_A NTRC family transcripti 25.1 64 0.0022 19.9 2.9 35 12-46 33-68 (196)
96 2g29_A Nitrate transport prote 24.1 1.2E+02 0.004 20.5 4.3 31 16-47 192-222 (417)
97 4i1d_A ABC transporter substra 23.8 1.4E+02 0.0048 18.7 4.8 56 15-72 185-240 (324)
98 1sw5_A Osmoprotection protein 23.2 40 0.0014 21.4 1.8 56 15-71 43-119 (275)
99 3t7a_A Inositol pyrophosphate 22.9 85 0.0029 21.6 3.4 44 17-63 24-69 (330)
100 2lpm_A Two-component response 22.8 86 0.0029 17.7 3.0 25 13-38 38-62 (123)
101 2y7p_A LYSR-type regulatory pr 22.0 1.1E+02 0.0037 17.9 3.5 49 15-73 44-92 (218)
102 2o55_A Putative glycerophospho 21.9 1.2E+02 0.0042 19.0 3.9 34 16-50 225-258 (258)
103 3kn3_A Putative periplasmic pr 21.5 59 0.002 21.0 2.3 57 12-72 38-95 (242)
104 2xxp_A CPS2A; replication, pep 21.5 78 0.0027 21.9 3.0 33 12-45 66-98 (398)
105 1snn_A DHBP synthase, 3,4-dihy 20.9 69 0.0023 20.9 2.5 40 15-61 2-41 (227)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.47 E-value=5.1e-14 Score=103.17 Aligned_cols=74 Identities=55% Similarity=0.971 Sum_probs=66.8
Q ss_pred ChhHhhhccCcccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCCC
Q psy2802 1 MYYFMQMHKDKVFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPLK 74 (74)
Q Consensus 1 ~w~~m~~~~~~~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl~ 74 (74)
||++|+..++..++++.+||+++++..+|.+|++.|.+.++|+.++++|+|.++|+.|...+|||++||||||+
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~ 734 (823)
T 3kg2_A 661 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLG 734 (823)
T ss_dssp HHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSH
T ss_pred HHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChHH
Confidence 47788877778899999999999985456899999999999998887799999999999999999999999985
No 2
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.12 E-value=5.2e-11 Score=78.79 Aligned_cols=61 Identities=28% Similarity=0.467 Sum_probs=56.3
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPLK 74 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl~ 74 (74)
..+++..+++++|++|+ +||++.|.+++.|++++. |+|.+++..+...+|+|+++|+|||+
T Consensus 201 ~~~~~~~~~~~~l~~G~-vDa~i~d~~~~~~~~~~~-~~l~~~~~~~~~~~~~ia~~k~~~l~ 261 (292)
T 1pb7_A 201 HNYESAAEAIQAVRDNK-LHAFIWDSAVLEFEASQK-CDLVTTGELFFRSGFGIGMRKDSPWK 261 (292)
T ss_dssp TCBSSHHHHHHHHHTTS-CSEEEEEHHHHHHHHHHC-TTEEECSSCSEEEEECCEEETTCSSH
T ss_pred hcCCCHHHHHHHHHcCC-ceEEEEcHHHHHHHHhcC-CCEEEcCccccCCceEEEEeCCCHHH
Confidence 46899999999999975 999999999999999887 99999999999999999999999873
No 3
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=98.94 E-value=5e-10 Score=73.88 Aligned_cols=60 Identities=28% Similarity=0.612 Sum_probs=55.2
Q ss_pred cccCHHHHHHHHhh--cCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCCC
Q psy2802 13 FVSSETEGVNKVRS--SHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 13 ~v~~~~egv~~~~~--~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
.+++..+++++|++ |+ +||+|.|.+++.|++++.+ |+|.+++..+...+|+|+++|+|+|
T Consensus 200 ~~~~~~~~~~~l~~~~Gr-vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l 262 (294)
T 2rc8_A 200 NVPATPDGVQYLKNDPEK-LDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPL 262 (294)
T ss_dssp CBSSHHHHHHHHHSSSCC-CSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTH
T ss_pred cCCCHHHHHHHHHhccCc-eeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHH
Confidence 47899999999998 54 9999999999999999877 9999999999999999999999986
No 4
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.93 E-value=1.2e-09 Score=72.33 Aligned_cols=59 Identities=44% Similarity=0.866 Sum_probs=54.4
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
..+++..+++++|.+|. ||++.|.+++.|++++. |+|.+++..+...+|+|+++|++||
T Consensus 203 ~~~~~~~~~~~~l~~G~--Da~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~a~~k~~~l 261 (312)
T 1yae_A 203 VLVKSNEEGIQRVLTSD--YAFLMESTTIEFVTQRN-CNLTQIGGLIDSKGYGVGTPMGSPY 261 (312)
T ss_dssp HCBSSHHHHHHHHHHSS--EEEEEEHHHHHHHHTTC-TTEEEESSCSSCEEEEEEEETTCSS
T ss_pred cccCCHHHHHHHHHcCC--cEEEeccHHHHHHHhcC-CCEEEecccccccceEEEEeCCCCc
Confidence 45889999999999974 99999999999999887 9999999999999999999999986
No 5
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=98.93 E-value=6.6e-10 Score=71.02 Aligned_cols=69 Identities=41% Similarity=0.820 Sum_probs=58.0
Q ss_pred hhHhhhccCcccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 2 YYFMQMHKDKVFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 2 w~~m~~~~~~~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
|..|.....-+.+++..+++++|..|. ||++.|.+++.|++++. |++.+++..+...+|+|+++|++||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~g~--da~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~a~~k~~~l 227 (259)
T 3g3k_A 159 WAFMSSRRQSVLVKSNEEGIQRVLTSD--YAFLMESTTIEFVTQRN-CNLTQIGGLIDSKGYGVGTPMGSPY 227 (259)
T ss_dssp HHHHHHTHHHHEESSHHHHHHHHHHSS--EEEEEEHHHHHHHHHHC-TTEEEESSCSSCEEECCEEETTCTH
T ss_pred HHHHHhcCCCcccCCHHHHHHHHHhCC--eEEEechHHHHHHhcCC-ceEEEecccceeeeEEEEECCCCcc
Confidence 344433333356789999999999974 99999999999999985 9999999999999999999999985
No 6
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=98.88 E-value=1.9e-09 Score=70.80 Aligned_cols=59 Identities=22% Similarity=0.504 Sum_probs=53.6
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeC--CcCCccceEEEecCCCCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVG--NNLDVKGFGVATPIGSPLK 74 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg--~~f~~~~ygia~~k~Spl~ 74 (74)
++.++++++|..|+ +||+|.|.+++.|++++.+ |++.++| ..+...+|+||++|+|+|+
T Consensus 193 ~~~~~~l~~l~~G~-vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~l~ 254 (284)
T 2a5s_A 193 RGVEDALVSLKTGK-LDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWK 254 (284)
T ss_dssp SSHHHHHHHHHTTS-CSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTH
T ss_pred CCHHHHHHHHHcCC-eeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCHHH
Confidence 78999999999975 9999999999999999887 9999986 5788899999999999873
No 7
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.83 E-value=3.7e-09 Score=67.31 Aligned_cols=60 Identities=30% Similarity=0.558 Sum_probs=52.0
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
..+++..+++++|..|. + |++.|.+++.|++++.+ |++.+++..+...+|+|+++|++||
T Consensus 172 ~~~~~~~~~~~~l~~G~-~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l 232 (265)
T 2v3u_A 172 NNVLESQAGIQKVKYGN-Y-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPY 232 (265)
T ss_dssp CCBSSHHHHHHHHHHSS-C-EEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTT
T ss_pred cccCCHHHHHHHHHcCC-E-EEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCcc
Confidence 46889999999999976 7 99999999999998877 9999999999999999999999986
No 8
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.78 E-value=1e-08 Score=65.54 Aligned_cols=62 Identities=56% Similarity=0.988 Sum_probs=54.4
Q ss_pred CcccccCHHHHHHHH--hhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 10 DKVFVSSETEGVNKV--RSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 10 ~~~~v~~~~egv~~~--~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
.-..+++..+++++| ..|. ||++.|.+++.|++++.+|++.+++..+...+|+|+++|+++|
T Consensus 167 ~~~~~~~~~~~~~~l~~~~g~--da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 230 (263)
T 1mqi_A 167 PSVFVRTTAEGVARVRKSKGK--YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSL 230 (263)
T ss_dssp SCCCBSSHHHHHHHHHHTTTS--EEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTT
T ss_pred CceecCCHHHHHHHHhhcCCc--EEEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCCCcc
Confidence 345688999999999 6543 8999999999999988888999999999999999999999876
No 9
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=98.31 E-value=1.2e-06 Score=54.25 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=54.3
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
..+++..+++++|..|. +||++.+.+++.|++++.+ .++.+++..+....++|+++++++|
T Consensus 139 ~~~~~~~~~~~~l~~g~-vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 200 (233)
T 1ii5_A 139 RETNNLTAAITLLQKKQ-VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPL 200 (233)
T ss_dssp EEESSHHHHHHHHHTTS-CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTT
T ss_pred EEcCCHHHHHHHHHcCC-ccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchH
Confidence 45678999999999975 9999999999999999887 6899999888888999999999875
No 10
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.24 E-value=1.4e-06 Score=55.09 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=54.8
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
..+++..+++++|.+|. +||++.+.+++.|++++.+ .++.+++..+...+++|++++++||
T Consensus 155 ~~~~~~~~~~~~L~~Gr-vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l 216 (249)
T 4f3p_A 155 RQFPNIDQAYLALEAGR-VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPL 216 (249)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTH
T ss_pred EEcCCHHHHHHHHHcCC-eeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchH
Confidence 45788999999999975 9999999999999999887 7799999999999999999998873
No 11
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=98.22 E-value=1.8e-06 Score=54.40 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=54.1
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
..+++..+++++|..|. +||++.+.+++.|++++.+ +.+.+++..+...+++|++++++|
T Consensus 140 ~~~~~~~~~~~~L~~Gr-vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 200 (245)
T 3k4u_A 140 KTYDTEAEAVQEVLNGK-ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDP 200 (245)
T ss_dssp EEESSHHHHHHHHHSSS-SEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCH
T ss_pred EEeCCHHHHHHHHHcCC-CcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCH
Confidence 45789999999999975 9999999999999988876 889999999999999999999875
No 12
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.18 E-value=2.5e-06 Score=53.75 Aligned_cols=60 Identities=18% Similarity=0.079 Sum_probs=52.0
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCC-cCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGN-NLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~-~f~~~~ygia~~k~Sp 72 (74)
..+++..+++++|..|. +||++.|.+++.|++++.+.++.+++. .+...+++|+++++++
T Consensus 129 ~~~~~~~~~~~~L~~Gr-vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 189 (232)
T 3i6v_A 129 VEFATPEETIAAVRNGE-ADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDG 189 (232)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCH
T ss_pred EEeCCHHHHHHHHHcCC-cCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCH
Confidence 45789999999999975 999999999999999887677888886 4677899999999874
No 13
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.12 E-value=2.6e-06 Score=54.37 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=53.9
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC--CCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP--CDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~--c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
+.+++..+++++|.+|. +||++.+.+++.|++++.+ +++.+++..+...+++|+++++++
T Consensus 159 ~~~~~~~~~~~~L~~Gr-vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~ 220 (268)
T 3hv1_A 159 VQYSTFTQALIDLNSGR-IDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDK 220 (268)
T ss_dssp EEESSHHHHHHHHHHTS-CSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCH
T ss_pred EEeCCHHHHHHHHHcCC-CCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCH
Confidence 45789999999999975 9999999999999999876 789999998999999999999874
No 14
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.10 E-value=1.2e-06 Score=55.83 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=51.8
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
.++..+++++|..|. +||+|.|..++.|++++.+.++.+++.++...+++|+++|++|
T Consensus 150 ~~~~~~~~~~L~~Gr-vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 207 (243)
T 4gvo_A 150 GQGSNDTANQLKTGR-ADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDET 207 (243)
T ss_dssp CSGGGSHHHHHHHTS-CSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCH
T ss_pred cCChHHHHHHHHcCC-ccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCH
Confidence 467889999999975 9999999999999988877888999999999999999999874
No 15
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.08 E-value=3.1e-06 Score=52.05 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=53.6
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
..+++..++++++..|. +||++.+.+.+.|++++.+ +++.+++..+....++++++++++|
T Consensus 135 ~~~~~~~~~~~~l~~g~-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (228)
T 2pyy_A 135 LEVPKIEEAYKALQTKK-ADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPY 196 (228)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTT
T ss_pred EecCCHHHHHHHHHcCC-CCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHH
Confidence 34688999999999975 9999999999999998887 7899888888888999999998875
No 16
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.05 E-value=2.3e-06 Score=54.40 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=48.6
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEe-CCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKV-GNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~v-g~~f~~~~ygia~~k~Sp 72 (74)
..+++..+++++|..|+ +||++.|.+++.|++.+++ ..+..+ ...+....|+||++|++|
T Consensus 148 ~~~~~~~~~~~~l~~Gr-vD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~ 209 (243)
T 4h5g_A 148 TSLTNMGEAVNELQAGK-IDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSD 209 (243)
T ss_dssp EEESCHHHHHHHHHHTS-CSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCH
T ss_pred EEeCCHHHHHHHHHcCC-ccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCH
Confidence 45789999999999975 9999999999999998876 444333 345667789999999885
No 17
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.04 E-value=8.3e-06 Score=50.97 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=51.7
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccc----eEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKG----FGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~----ygia~~k~Sp 72 (74)
..+++..+++++|..|+ +||++.+.+++.|++++. ..+.+++..+.... ++|+++++++
T Consensus 142 ~~~~~~~~~~~~L~~g~-vDa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 204 (242)
T 3del_B 142 RSFDSTLEVLMEVMHGK-SPVAVLEPSIAQVVLKDF-PALSTATIDLPEDQWVLGYGIGVASDRP 204 (242)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEECHHHHHHHGGGC-TTEEEEEEECCGGGCEEEEEEEEETTCH
T ss_pred EEECCHHHHHHHHHcCC-CCEEEecHHHHHHHHHhC-CCeEEecCccCcccccceEEEEEeCCCH
Confidence 45789999999999975 999999999999999987 45888888888888 9999999864
No 18
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=98.02 E-value=5.6e-06 Score=51.18 Aligned_cols=60 Identities=10% Similarity=0.164 Sum_probs=53.5
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
..+++..+++++|.+|. +||++.+.+.+.|++++.+ .++.+++..+...+++|+++++++
T Consensus 142 ~~~~~~~~~~~~l~~g~-vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (234)
T 3h7m_A 142 VLTPTPADALRLLAAGG-CDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDA 202 (234)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCH
T ss_pred EEeCCHHHHHHHHHcCC-ceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCH
Confidence 45788999999999975 9999999999999999887 779999988889999999999864
No 19
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=98.00 E-value=6.6e-06 Score=50.48 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=52.2
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~S 71 (74)
..+++..++++++.+|. +||++.+.+.+.|++++.+ +++.+++..+....++|++++++
T Consensus 134 ~~~~~~~~~~~~l~~g~-vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~ 193 (226)
T 1wdn_A 134 RQFPNIDNAYMELGTNR-ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGS 193 (226)
T ss_dssp EEESSHHHHHHHHHTTS-CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTC
T ss_pred EEeCCHHHHHHHHHcCC-cCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCC
Confidence 34678999999999975 9999999999999998887 78999888888889999999986
No 20
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=97.97 E-value=9.5e-06 Score=52.09 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=51.0
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcC-CccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNL-DVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f-~~~~ygia~~k~Sp 72 (74)
..+++..+++++|.+|+ +||++.+.+++.|++++.. .++.+++... .+..++|++++++|
T Consensus 164 ~~~~~~~~~l~~L~~Gr-vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~ 225 (267)
T 3mpk_A 164 VTADNPSEAMLMVANGQ-ADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQT 225 (267)
T ss_dssp EEESSHHHHHHHHHHTS-CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCH
T ss_pred EEeCCHHHHHHHHHcCC-CCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCH
Confidence 45788999999999975 9999999999999998854 7788887643 47889999999875
No 21
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=97.92 E-value=1.3e-05 Score=51.16 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=52.1
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
..+++..++++++.+|+ +||++.|.+++.+++++...++...+..+...+|+|+++|+++|
T Consensus 168 ~~~~~~~~~~~~l~~G~-vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 228 (259)
T 4dz1_A 168 KLYPTYNETMADLKNGN-LDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPV 228 (259)
T ss_dssp EEESSHHHHHHHHHHTS-CSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHH
T ss_pred EecCCHHHHHHHHHcCC-CCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHH
Confidence 45788999999999975 99999999999898877667788877777788999999998753
No 22
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=97.91 E-value=1.9e-05 Score=50.84 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=52.5
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC--CCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP--CDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~--c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
+.+++..+++++|..|+ +||++.+.+++.+++++.+ .++.+++..+....++|+++++++
T Consensus 159 ~~~~~~~~~~~~L~~G~-vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 220 (287)
T 2vha_A 159 ISAKDHGDSFRTLESGR-AVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDP 220 (287)
T ss_dssp EEESSHHHHHHHHHTTS-CSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCH
T ss_pred EEcCCHHHHHHHHHcCC-eeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCH
Confidence 45788999999999975 9999999999999998764 578999988888999999999864
No 23
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=97.91 E-value=8e-06 Score=50.14 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=50.2
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccc-----eEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKG-----FGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~-----ygia~~k~Sp 72 (74)
..+++..++++++..|+ +||++.+.+.+.|++++.+ .++.+++..+.... ++|++++++|
T Consensus 135 ~~~~~~~~~~~~l~~gr-vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (227)
T 3tql_A 135 QRYPSEEDALMDLTSGR-VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQ 200 (227)
T ss_dssp EEESSHHHHHHHHTTTS-SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCH
T ss_pred EEcCCHHHHHHHHHcCC-cCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCH
Confidence 45789999999999975 9999999999999999987 56888876665544 4899999875
No 24
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=97.90 E-value=2e-05 Score=49.62 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=51.4
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccc----eEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKG----FGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~----ygia~~k~Sp 72 (74)
..+++..++++++.+|+ +||++.+.+.+.|++++.+ ++.+++..+.... ++|++++++|
T Consensus 163 ~~~~~~~~~~~~l~~G~-vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~ 225 (268)
T 3qax_A 163 RSFDSTLEVIMEVRYGK-SPVAVLEPSVGRVVLKDFP-NLVATRLELPPECWVLGCGLGVAKDRP 225 (268)
T ss_dssp EEESCHHHHHHHHHTTS-SSEEEECHHHHHHHGGGCT-TEEEEEEECCGGGCBCCEEEEECTTCH
T ss_pred EecCCHHHHHHHHHcCC-CCEEEecHHHHHHHHHhCC-CcEEecCccCcccccccEEEEEeCCCH
Confidence 35678999999999975 9999999999999999875 4888888888888 9999999874
No 25
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=97.90 E-value=5.5e-06 Score=51.84 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=51.8
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-------CCeEEeCCcC-CccceEEEecCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-------CDTMKVGNNL-DVKGFGVATPIGS 71 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-------c~L~~vg~~f-~~~~ygia~~k~S 71 (74)
..+++..++++++.+|. +||++.+.+++.|++++.+ .++.+++..+ ...+++|++++++
T Consensus 135 ~~~~~~~~~~~~l~~G~-vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~ 201 (237)
T 3kzg_A 135 IFYELIQDMLLGLSNNQ-VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQ 201 (237)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGG
T ss_pred EEeCCHHHHHHHHHcCC-CCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCC
Confidence 45788999999999975 9999999999999998864 2799999888 8899999999975
No 26
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=97.87 E-value=1.4e-05 Score=49.77 Aligned_cols=57 Identities=5% Similarity=-0.130 Sum_probs=49.9
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccc-eEEEecCCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKG-FGVATPIGSP 72 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~-ygia~~k~Sp 72 (74)
.+..+++++|..|+ +||++.+.+++.|++++.+ .++.+++..+.... ++|++++++|
T Consensus 149 ~~~~~~~~~L~~g~-vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 207 (246)
T 4eq9_A 149 ADFQQIMVRLSDGQ-FDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQD 207 (246)
T ss_dssp CCHHHHHHHHHTTS-SSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCH
T ss_pred CCHHHHHHHHHcCC-ceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCH
Confidence 48899999999975 9999999999999998887 67999988877665 8899999874
No 27
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=97.79 E-value=2.4e-05 Score=50.85 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=51.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeC-CcCC-ccceEEEecCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVG-NNLD-VKGFGVATPIGSP 72 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg-~~f~-~~~ygia~~k~Sp 72 (74)
.+++..++++++.+|+ +||++.+.+.+.|++++.+ .++.+++ ..+. ...++|++++++|
T Consensus 188 ~~~~~~~~~~~l~~g~-vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~ 249 (283)
T 2yln_A 188 PVDGLAQSLTLIEQKR-ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGND 249 (283)
T ss_dssp ECSSHHHHHHHHHTTS-CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCH
T ss_pred EeCCHHHHHHHHHcCC-CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCH
Confidence 4578899999999975 9999999999999998887 5699998 8888 8899999999864
No 28
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=97.73 E-value=3.7e-05 Score=47.34 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=49.3
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCc-----cceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDV-----KGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~-----~~ygia~~k~Sp 72 (74)
..+++..++++++..|. +||++.+.+++.|++++.+ ++.+++..+.. ..++|++++++|
T Consensus 137 ~~~~~~~~~~~~l~~gr-vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (229)
T 2y7i_A 137 VAYDSYLNAFTDLKNNR-LEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKDND 200 (229)
T ss_dssp EEESCHHHHHHHHHTTS-CSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTTCH
T ss_pred EecCCHHHHHHHHHcCC-cCEEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCCCH
Confidence 34678999999999975 9999999999999998885 88888876532 488999999864
No 29
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=97.66 E-value=1.7e-05 Score=49.40 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=46.4
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe--CCcCCccceEEEecC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV--GNNLDVKGFGVATPI 69 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v--g~~f~~~~ygia~~k 69 (74)
..+++..+++++|.+|. +||++.|.+++.|++++.+ ++.++ ..++...+++|++++
T Consensus 150 ~~~~~~~~~~~~l~~gr-vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 150 LVHPDNVTIFQQIVDGK-ADLMMTDAIEARLQSRLHP-ELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp EECCCTTTHHHHHHTTS-CSEEEEEHHHHHHHHHHCT-TEEECCCC-CCCCEEECCEECS
T ss_pred EEeCCHHHHHHHHHcCC-cCEEEEchHHHHHHHHhCC-CcEEecCCCCccccceEEEEcC
Confidence 34678899999999975 9999999999999999875 45554 456788899999998
No 30
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=97.65 E-value=5.9e-05 Score=49.08 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=51.3
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccce-EEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGF-GVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~y-gia~~k~Sp 72 (74)
..+++..++++++.+|+ +||++.+.+.+.+++++.+ ++.+++..+....+ +|++++++|
T Consensus 189 ~~~~~~~~~~~~l~~G~-vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~ 248 (291)
T 2yjp_A 189 LKFDQNTETFDALKDGR-GVALAHDNALLWAWAKENP-NFEVAIGNLGPAEFIAPAVQKGNA 248 (291)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHHHHHHHCT-TEEEEECCSSSCEEECCEEETTCH
T ss_pred EEeCCHHHHHHHHHcCC-ccEEEecHHHHHHHHHhCC-CeEEcCCcccCCcceEEEEeCCCH
Confidence 34678999999999975 9999999999999998874 58888888888899 999999874
No 31
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=97.54 E-value=0.00011 Score=46.22 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=48.2
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCC---ccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLD---VKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~---~~~ygia~~k~Sp 72 (74)
..+++..++++++.+|+ +||++.+.+.+.+++++.+ ++.++...+. ..++++++++++|
T Consensus 175 ~~~~~~~~~~~~l~~g~-vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (269)
T 4i62_A 175 VSLPKNGNLITDLKSGQ-VDAVIFEEPVAKGFVENNP-DLAIADLNFEKEQDDSYAVAMKKDSK 236 (269)
T ss_dssp EEESCHHHHHHHHHTTS-SSEEEEEHHHHHHHHHHCT-TEEECSCCCCC-CCCEECCEEESSCH
T ss_pred EecCCHHHHHHHHHcCC-CCEEEeChHHHHHHHHhCC-CCeEEeeccCCCcccceEEEEeCCCH
Confidence 45788999999999975 9999999999999998874 5555555444 7789999999874
No 32
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=97.53 E-value=5.7e-05 Score=46.90 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=47.6
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHH-HHhhCC-CCeEEeCCcCCcc-----ceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDY-ENARQP-CDTMKVGNNLDVK-----GFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y-~~~~~~-c~L~~vg~~f~~~-----~ygia~~k~Sp 72 (74)
..+++..+++++|..|. +||++.+.+++.+ ++.+.+ +++.+++..+... +++|+++++++
T Consensus 138 ~~~~~~~~~~~~l~~G~-vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~ 204 (239)
T 1lst_A 138 VAYANQDLIYSDLTAGR-LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDT 204 (239)
T ss_dssp EEESSHHHHHHHHHTTS-CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCH
T ss_pred EEcCCHHHHHHHHHcCC-CCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCH
Confidence 35788999999999975 9999999999864 555544 6788888776543 79999999875
No 33
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=97.52 E-value=5.4e-05 Score=49.01 Aligned_cols=59 Identities=15% Similarity=-0.008 Sum_probs=50.9
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccce-EEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGF-GVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~y-gia~~k~Sp 72 (74)
..+++..++++++.+|+ +||++.+.+.+.|++++.+ ++.+++..+....| +|++++++|
T Consensus 178 ~~~~~~~~~~~~L~~G~-vDa~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~k~~~ 237 (292)
T 1xt8_A 178 LKYDQNTETFAALMDKR-GDALSHDNTLLFAWVKDHP-DFKMGIKELGNKDVIAPAVKKGDK 237 (292)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHHHHHHHCT-TEEEEEEEEEEEEEECCEEETTCH
T ss_pred EEcCCHHHHHHHHHcCC-ccEEEecHHHHHHHHHhCC-CeEEcccccccCceeEEEEeCCCH
Confidence 34678899999999975 9999999999999998874 58888877888888 999999864
No 34
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=97.49 E-value=0.00018 Score=46.02 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=50.3
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcC--CccceEEEecCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNL--DVKGFGVATPIGS 71 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f--~~~~ygia~~k~S 71 (74)
..+++..+++++|.+|+ +||++.+.+.+.|++++.+ .++.+++... ....++|+++++.
T Consensus 173 ~~~~~~~~~~~~l~~G~-vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~ 234 (272)
T 2pvu_A 173 KKFETTVVAIMELLNGG-VDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNS 234 (272)
T ss_dssp EEESSHHHHHHHHHTTS-CSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTC
T ss_pred EEcCCHHHHHHHHHcCC-ccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCH
Confidence 45688999999999975 9999999999999998887 5688888763 7778999999883
No 35
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=97.22 E-value=0.0002 Score=45.96 Aligned_cols=59 Identities=7% Similarity=-0.013 Sum_probs=47.1
Q ss_pred ccccCHHHH--HHHHhhcCCceEEEeccchhHHHHh-hCC-CCeEEe-CCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEG--VNKVRSSHGKYAFLIESPRNDYENA-RQP-CDTMKV-GNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~eg--v~~~~~~~g~~A~i~d~~~l~y~~~-~~~-c~L~~v-g~~f~~~~ygia~~k~Sp 72 (74)
..+++..++ +++|..|. +| ++.+...+.+++. +.+ .++.++ +..+...+++|++++++|
T Consensus 155 ~~~~~~~~~~l~~~L~~Gr-vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 218 (271)
T 2iee_A 155 VIYDNATNEQYLKDVANGR-TD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNA 218 (271)
T ss_dssp EECSSCCHHHHHHHHHHTS-SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCH
T ss_pred EEeCChhhHHHHHHHHcCC-cc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCH
Confidence 346788899 99999975 99 7777777776666 655 678888 778888899999999874
No 36
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=97.20 E-value=0.00024 Score=44.64 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=46.2
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCC--ccceEEEecCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLD--VKGFGVATPIGS 71 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~--~~~ygia~~k~S 71 (74)
..+++..+++++|..|+ +||++.+.+++.|++++.+ ..+..++.... ..+|++++++++
T Consensus 150 ~~~~~~~~~~~~l~~gr-vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 211 (257)
T 2q88_A 150 IVVPDGQSGLKMLQDGR-IDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGD 211 (257)
T ss_dssp EECSSHHHHHHHHHHTS-CSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGG
T ss_pred EEcCCHHHHHHHHHcCC-CcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCC
Confidence 45788999999999975 9999999999999998876 45666553211 356888998875
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=97.02 E-value=0.00024 Score=44.34 Aligned_cols=56 Identities=7% Similarity=0.005 Sum_probs=47.3
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~S 71 (74)
..+++..+.++.+..|+ +||++.+.+.+.+++++.+. +++..+....++|++++++
T Consensus 177 ~~~~~~~~~~~~l~~g~-vDa~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~ 232 (259)
T 2v25_A 177 SEFPDYPSIKAALDAKR-VDAFSVDKSILLGYVDDKSE---ILPDSFEPQSYGIVTKKDD 232 (259)
T ss_dssp EEESSHHHHHHHHHTTS-SSEEEEEHHHHTTTCCTTEE---ECSCCCSEEEECCEEETTC
T ss_pred EEeCCHHHHHHHHHcCC-CcEEEecHHHHHHHHHhCCC---ccccccccceeEEEEcCCC
Confidence 45788899999999975 99999999999998877643 5677788889999999986
No 38
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=95.36 E-value=0.025 Score=38.08 Aligned_cols=57 Identities=7% Similarity=-0.077 Sum_probs=46.5
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC---CCeEEeCCcCCccceEEEecCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP---CDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~---c~L~~vg~~f~~~~ygia~~k~S 71 (74)
..+..+.+..|..|+ +||.+.+.+.+.+++++.| .++.+++....-..++|+++++-
T Consensus 163 ~~~~~~a~~al~~G~-vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~ 222 (321)
T 3p7i_A 163 NAGHETNALAVANKQ-VDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNL 222 (321)
T ss_dssp ECCHHHHHHHHHTTS-SSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTS
T ss_pred cCCHHHHHHHHHCCC-ceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCC
Confidence 456778999999875 9999999999999888754 57888887655567899999984
No 39
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=94.95 E-value=0.027 Score=37.51 Aligned_cols=57 Identities=11% Similarity=-0.073 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC---CCeEEeCCcCCccceEEEecCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP---CDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~---c~L~~vg~~f~~~~ygia~~k~S 71 (74)
..+..+.+..|..|+ +||.+.+.+.+.+++++.| .++.+++......+++|++|++-
T Consensus 154 ~g~~~~~~~al~~G~-vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 154 NSSHEVNALAVANKQ-VDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp ECCHHHHHHHHHTTS-SSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred cCCHHHHHHHHHcCC-ccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCC
Confidence 356678999999875 9999999999999988764 46888776544557899999984
No 40
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=92.33 E-value=0.19 Score=32.92 Aligned_cols=53 Identities=11% Similarity=-0.052 Sum_probs=35.5
Q ss_pred cc-cCHHHHHHHHhhcCCceEEEe--ccchhHHHHhhCCCCeEEeCCcC-----CccceEEEecCCC
Q psy2802 13 FV-SSETEGVNKVRSSHGKYAFLI--ESPRNDYENARQPCDTMKVGNNL-----DVKGFGVATPIGS 71 (74)
Q Consensus 13 ~v-~~~~egv~~~~~~~g~~A~i~--d~~~l~y~~~~~~c~L~~vg~~f-----~~~~ygia~~k~S 71 (74)
++ .+..+.+.++++|+ +||+|| |.++.. .+ -+|..+.-.+ ....-.|+++||+
T Consensus 139 ~ve~~y~~~i~~L~~G~-IDA~Iwn~d~~~a~---~~--~~l~~~~l~~~~~~~~~~eavI~v~k~n 199 (231)
T 2ozz_A 139 RVDLSYHESLQRIVKGD-VDAVIWNVVAENEL---TM--LGLEATPLTDDPRFLQATEAVVLTRVDD 199 (231)
T ss_dssp EEECCHHHHHHHHHHTS-CCEEEEEC-CHHHH---HH--TTEEEEECCSCHHHHHTTCEEEEEETTC
T ss_pred EEECCHHHHHHHHHcCC-ccEEEEcCcchhhh---cC--CCcceeccccccccccCCceEEEEECCC
Confidence 45 77899999999986 999999 999876 22 2333332222 2334458899985
No 41
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=84.33 E-value=1.5 Score=32.96 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=41.4
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe-CCcC------CccceEEEe-cCCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV-GNNL------DVKGFGVAT-PIGSPL 73 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v-g~~f------~~~~ygia~-~k~Spl 73 (74)
...+..+.|++++.++ .|++..|..-+ |.+.+.+++|..| .+.. ....|++|+ +|+|++
T Consensus 60 ~~~s~~~Ci~~I~~g~-AD~~~ld~~~v-y~A~~~~~~L~Pv~~E~y~~~~~~~~~YyaVAVVkk~s~~ 126 (698)
T 3v83_A 60 KKASYLDCIRAIAANE-ADAVTLDAGLV-YDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF 126 (698)
T ss_dssp EESSHHHHHHHHHTTS-CCBEEECHHHH-HHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEESSCCC
T ss_pred ecCCHHHHHHHHHcCC-CCEEEEChHHH-HhhccCcCCcEEEEEEeeccCCCCCcceEEEEEEeCCCCC
Confidence 4567899999999975 99999988743 6665455887543 2322 244688886 678875
No 42
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=83.84 E-value=1.8 Score=27.64 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=38.6
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
.+..+.++.+.+|+ .|..+.....+-....+. .++..++..+...+++|..+++|+.
T Consensus 42 ~~~~~~~~~l~~G~-~D~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~l~~~~~s~i 98 (302)
T 3ix1_A 42 TNPTDPIQLTASGA-IPLALSYQPDVILARSKD-LPVVSVASVVRSPLNHVMFLAEQDF 98 (302)
T ss_dssp SSTTHHHHHHHHTS-CSEEEECHHHHHHHHHTT-CCEEEEEEEECSCCEEEEEEGGGCC
T ss_pred CCCchHHHHHHCCC-CCEEecCHHHHHHHHHCC-CCEEEEEEEeccCCEEEEEECCCCC
Confidence 34457888898876 887776533222222322 6788888777777899999988875
No 43
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=82.98 E-value=4 Score=26.79 Aligned_cols=55 Identities=15% Similarity=-0.107 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCceEEE-eccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCCC
Q psy2802 17 ETEGVNKVRSSHGKYAFL-IESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPLK 74 (74)
Q Consensus 17 ~~egv~~~~~~~g~~A~i-~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl~ 74 (74)
..+.++.+.+|+ .|..+ ...+.+.. ..+. .++..++..+...+++|+.+++|+++
T Consensus 57 ~~~~~~al~~G~-~D~~~~~~~~~~~~-~~~g-~~~~~v~~~~~~~~~~lvv~~~s~i~ 112 (348)
T 3uif_A 57 GPVINEGFASGK-IDFGIYGDLPPIIL-NASK-PTVQLVAPWGTTSNSYLVVPKNSTAK 112 (348)
T ss_dssp HHHHHHHHHTTC-CCEEEEESHHHHHH-HHHS-CCEEEEEECCCCCCCEEEEETTCCCC
T ss_pred cHHHHHHHHcCC-CCEEecCcHHHHHH-HhCC-CCEEEEEeccCCCceEEEEECCCCCC
Confidence 455678888875 77766 44444333 2333 66777766667778899999998763
No 44
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=82.45 E-value=5.9 Score=25.57 Aligned_cols=58 Identities=16% Similarity=0.022 Sum_probs=37.7
Q ss_pred ccCHHHHHHHHhhcCCceEE-EeccchhHHHHhhCCCCeEEeCCcC-CccceEEEecCCCCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAF-LIESPRNDYENARQPCDTMKVGNNL-DVKGFGVATPIGSPLK 74 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~-i~d~~~l~y~~~~~~c~L~~vg~~f-~~~~ygia~~k~Spl~ 74 (74)
.++..+.++.+.+|+ +|.. +...+.+.. ..+. .++..++... ...+++|.++++|+++
T Consensus 65 ~~~~~~~~~al~~G~-~D~~~~~~~~~~~~-~~~g-~~~~~v~~~~~~~~~~~lvv~~~s~I~ 124 (324)
T 3ksx_A 65 FPAGPQLLEALNVGS-IDLGGAGDIPPLFA-QAAG-ADLLYVGWVPPTPKAETILVPSKSALR 124 (324)
T ss_dssp ESSHHHHHHHHHTTS-CSEEEEESHHHHHH-HHTT-CCEEEEEEECCCGGGEEEEEETTCSCC
T ss_pred CCCHHHHHHHHHCCC-CCEEeecCHHHHHH-HhcC-CCEEEEEEecCCCCceEEEEeCCCCCC
Confidence 346778889999876 7765 444444432 2222 6677776544 3357899999998763
No 45
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=81.55 E-value=7.4 Score=24.83 Aligned_cols=58 Identities=7% Similarity=-0.117 Sum_probs=39.2
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCC--CC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGS--PL 73 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~S--pl 73 (74)
..+..+.++.+.+|+ .|..+......-....+. .++..+.......++++.++++| ++
T Consensus 71 ~~~~~~~~~~l~~G~-~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~i 130 (346)
T 3qsl_A 71 FAGGSKALQAVVGGS-ADVVSGAFEHTLSLQAKG-QFYRAFALQGRAPMIGVGVSKKNLPGY 130 (346)
T ss_dssp CSSHHHHHHHHHTTS-CSEEEEETHHHHHHHHTT-CCEEEEEESBSSCCEEEEEETTTCTTC
T ss_pred cCChHHHHHHHHCCC-CCEEccchHHHHHHHhCC-CCeEEEEecccCCCcEEEEecCcccCC
Confidence 456778899999875 887776554433333332 56777766655667889999887 64
No 46
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=80.45 E-value=2.7 Score=28.73 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=38.2
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhh-CCCCeEEe-CCcC------CccceEEEe-cCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENAR-QPCDTMKV-GNNL------DVKGFGVAT-PIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~-~~c~L~~v-g~~f------~~~~ygia~-~k~Spl 73 (74)
+...+..+.|+++++++ .|+.+.|... |++.+ .+++|..+ .+.. ....|++|+ +++|++
T Consensus 38 v~~~~~~~ci~aI~~g~-AD~~~ld~~~--~~~A~~~~~~l~pi~~e~~~~~~~~~~~Y~avaVVkk~s~i 105 (334)
T 1h45_A 38 IKRDSPIQCIQAIAENR-ADAVTLDGGF--IYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSF 105 (334)
T ss_dssp EECSSHHHHHHHHHTTS-CCBEEECHHH--HHHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEETTCCC
T ss_pred EEcCCHHHHHHHHHcCC-CCEEEeCccc--eEEeecCccCCEEEEEEeecCCCCCCCceEEEEEEeCCCCC
Confidence 34678899999999976 9999987664 44444 34777653 2222 234677644 567764
No 47
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=80.06 E-value=5.1 Score=26.76 Aligned_cols=34 Identities=3% Similarity=-0.010 Sum_probs=27.2
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhh
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENAR 46 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~ 46 (74)
+.+....+++..+..|+ +|+++.+.+.+..+++.
T Consensus 169 Vpy~G~~~a~~aL~~G~-VD~~~~~~~~~~~~i~~ 202 (312)
T 2f5x_A 169 IPYKGTAPAMNDLLGKQ-VDLMCDQTTNTTQQITS 202 (312)
T ss_dssp EECSSHHHHHHHHHTTS-SCEEEEEHHHHHHHHHT
T ss_pred eccCChHHHHHHHHcCC-ccEEEechHHHHHHHHc
Confidence 35677889999999976 99999988777666655
No 48
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=79.46 E-value=5 Score=26.85 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=27.2
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhh
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENAR 46 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~ 46 (74)
+.+....+++..+..|+ +|+++.+.+.+.-+++.
T Consensus 173 Vpy~G~~~a~~al~~G~-vD~~~~~~~~~~~~i~~ 206 (314)
T 2dvz_A 173 VPYKGSGPAVADAVGGQ-IELIFDNLPSSMPQIQA 206 (314)
T ss_dssp EECSSHHHHHHHHHHTS-SSEEEEEHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHcCC-ceEEEEcHHHHHHHHHc
Confidence 45677889999999976 99999988777666655
No 49
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=75.31 E-value=4.8 Score=30.22 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=39.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe-CCcCC------ccceEEEecC-CCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV-GNNLD------VKGFGVATPI-GSPL 73 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v-g~~f~------~~~ygia~~k-~Spl 73 (74)
...+..+.|++++.++ .|++..|.--+ |.+.+.+|+|..| .+... ...|++|+-+ +|++
T Consensus 38 ~~~s~~~Ci~~I~~g~-AD~~~ld~~~~-y~A~~~~~~L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~ 104 (686)
T 2d3i_A 38 QKATYLDCIKAIANNE-ADAISLDGGQV-FEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEF 104 (686)
T ss_dssp ECSSHHHHHHHHHTTS-CCBEEECHHHH-HHHHSTTTCCEEEEEEEBCCTTCCBSEEEEEEEEETTCCC
T ss_pred eCCCHHHHHHHHHcCC-CCEEEeCccce-EEeccccCCCEEEEEEeecCCCCCCCceEEEEEEECCCCC
Confidence 4567899999999975 99999887653 5555345887653 33332 3467766554 6654
No 50
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=73.79 E-value=5.1 Score=27.34 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=36.7
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhh-CCCCeEEe-CCcC------CccceEEE-ecCCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENAR-QPCDTMKV-GNNL------DVKGFGVA-TPIGSPL 73 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~-~~c~L~~v-g~~f------~~~~ygia-~~k~Spl 73 (74)
...+..+.|+++++++ +|+...|... |++.. ..++|..+ .+.. .+..|++| ++++|++
T Consensus 38 ~~~s~~~Ci~aI~~g~-aD~~~ld~~~--~~~A~~~~~~l~pi~~e~~~~~~~~~~~Y~aVaVVkkdS~i 104 (332)
T 1iej_A 38 QKATYLDCIKAIANNE-ADAITLDGGQ--VFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEF 104 (332)
T ss_dssp ECSSHHHHHHHHHTTS-CCBEEECHHH--HHHHTSTTTCCEEEEEEEEECSSSEESEEEEEEEEETTCCC
T ss_pred EcCCHHHHHHHHHcCC-CcEEEeCccc--eeEecccccCCEEEEEEEecCCCCCCCceEEEEEEeCCCCC
Confidence 4568899999999976 9999887654 44443 44776553 2222 23456644 4567764
No 51
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=72.87 E-value=7 Score=25.29 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=40.5
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
+.+.+..+.++++++|. .|.+|...+..+-.+... .+.+--.+|....+-++.|+++|+
T Consensus 38 ~~~~gSg~ll~qi~~G~-aDV~isa~~~~~~~l~~~--g~~~~~~~~~~n~lVlV~P~~~P~ 96 (236)
T 3lr1_A 38 VIAVGTGQALKLGEAGD-VDVVFVHARKLEDKFVAD--GFGVNRKDVMYNDFVIVGPKNDPA 96 (236)
T ss_dssp EEEECHHHHHHHHHTTS-CSEEEECCHHHHHHHHHT--TSEEEEEEEEECCEEEEECTTCTT
T ss_pred EEEcChHHHHHHHhcCC-CCEEeecCchhHHHHHhc--CCCcceEEEEcCcEEEEEECCChh
Confidence 45677889999999875 899988777654433322 122223356667788999998886
No 52
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=72.36 E-value=8 Score=25.55 Aligned_cols=40 Identities=10% Similarity=-0.120 Sum_probs=29.6
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV 54 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v 54 (74)
+.+....+++..+..|+ +|+++.+.+.+..+++. .++..+
T Consensus 160 Vpy~g~~~a~~al~~G~-vD~~~~~~~~~~~~i~~--g~lr~L 199 (301)
T 2qpq_A 160 VPYKGCGPALNDVLGSQ-IGLAVVTASSAIPFIKA--GKLQAL 199 (301)
T ss_dssp EECSSHHHHHHHHHTTS-SSCEEEEHHHHHHHHHT--TSEEEE
T ss_pred eccCChHHHHHHHHCCC-ccEEEEcHHHHHHHHhc--CCeEEE
Confidence 45678889999999976 99999988777666654 344443
No 53
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=71.24 E-value=5.1 Score=30.18 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=40.0
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe-CCcC------CccceEEEe-cCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV-GNNL------DVKGFGVAT-PIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v-g~~f------~~~~ygia~-~k~Spl 73 (74)
+...+..+.|++++.++ .|+...|..-+ |.+...+.+|..| .|.. ....|++|+ +|+|++
T Consensus 46 v~~~d~~~Ci~~I~~g~-AD~~~ld~~~v-y~A~~~~~~L~Pi~~E~y~~~~~~~~~YyaVAVVkK~s~i 113 (687)
T 3mc2_A 46 VRKMSHPECIRDISANK-VDAVTVDGALV-AEADLPHHSLKPIMAEYYGSKDDPKTHYYVVAMAKKGTGF 113 (687)
T ss_dssp EECSCHHHHHHHHHTTS-CCBEEECTTGG-GSCSSTTCCEEEEEEEEEECSSSEECEEEEEEEEETTTCC
T ss_pred EeCCCHHHHHHHHHCCC-CCEEEEChHHH-HhhhcccCCceEEEEEeeecCCCCCceeEEEEEEECCCCC
Confidence 34578899999999976 99999987743 6654344677443 2222 145688874 557765
No 54
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=71.22 E-value=10 Score=24.73 Aligned_cols=57 Identities=9% Similarity=-0.037 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
..+..+.++.+.+|+ +|..+......-....+. .++..++.. ...+.+|.++++|++
T Consensus 89 ~~~~~~~~~al~~G~-~D~~~~~~~~~~~~~~~g-~~~~~v~~~-~~~~~~ivv~~~s~I 145 (341)
T 3un6_A 89 FNNWPDLMDALNSGR-IDGASTLIELAMKSKQKG-SNIKAVALG-HHEGNVIMGQKGMHL 145 (341)
T ss_dssp CSSHHHHHHHHHTTS-SSEEEEEHHHHHHHHHTT-CCCEEEEES-CEECEEEEESTTCCG
T ss_pred cCCHHHHHHHHHcCC-CCEEecchHHHHHHHHCC-CCeEEEeec-CCCceEEEEcCCCCC
Confidence 445778888998875 777666554433222333 566666553 356788999998875
No 55
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=69.40 E-value=18 Score=22.77 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=35.7
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCc-CCccceEEEecCCCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNN-LDVKGFGVATPIGSPL 73 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~-f~~~~ygia~~k~Spl 73 (74)
.++..+.++.+.+|+ .|..+.......+...+ ..++..++.. ....++++.++++|++
T Consensus 39 ~~~~~~~~~~l~~G~-~D~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~lv~~~~~~i 97 (308)
T 2x26_A 39 FPAGPQMLEALNVGS-IDLGSTGDIPPIFAQAA-GADLVYVGVEPPKPKAEVILVAENSPI 97 (308)
T ss_dssp CSSHHHHHHHHHHTS-CSEEEECSHHHHHHHHT-TCCEEEEEEECCCGGGEEEEEETTCSC
T ss_pred CCCcHHHHHHHHCCC-CCEEcccCcHHHHHHhc-CCCeEEEEEecCCCCceEEEEeCCCCC
Confidence 345568889999875 88766544332222222 2566655443 3445788999998875
No 56
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=69.32 E-value=5.6 Score=27.04 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=37.7
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe-CCcC------CccceEEEe-cCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV-GNNL------DVKGFGVAT-PIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v-g~~f------~~~~ygia~-~k~Spl 73 (74)
+...+..+.|+++++|+ +|+...|.... |.+....++|..+ .+.. ....|++|+ +++|++
T Consensus 40 v~~~dy~~ci~ai~~g~-aD~~~l~~~~~-~~A~~~~~~l~pi~ae~~~~~~~~~~~Y~sVaVVkkdS~i 107 (327)
T 1ryo_A 40 VKKASYLDCIRAIAANE-ADAVTLDAGLV-YDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF 107 (327)
T ss_dssp EEESSHHHHHHHHHTTS-CCBEEECHHHH-HHHHSTTTCCEEEEEEEEECSSSEESEEEEEEEEETTCCC
T ss_pred EecCCHHHHHHHHHcCC-CcEEEeCccce-eEEecccCCCEEEEEEEecCCCCCCCceEEEEEEeCCCCC
Confidence 34578899999999976 99999877665 5555233666543 1211 234566544 557764
No 57
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=66.65 E-value=7.2 Score=29.26 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=39.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe-CCcC------CccceEEEec-CCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV-GNNL------DVKGFGVATP-IGSPL 73 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v-g~~f------~~~~ygia~~-k~Spl 73 (74)
...+..+.|++++.++ .|+.+.|.--+ |.+...+|+|..+ .+.. ....|++|+- |+|++
T Consensus 38 ~~~s~~~Ci~~I~~g~-AD~~~ld~~~~-y~A~~~~~~l~pv~aE~y~~~~~~~~~Y~aVAVVkk~s~~ 104 (689)
T 1blf_A 38 RRAFALECIRAIAEKK-ADAVTLDGGMV-FEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNF 104 (689)
T ss_dssp ECSSHHHHHHHHHTTS-CCBEEECHHHH-HHHHSTTTCEEEEEEEEEECSSSEESEEEEEEEEESSCCC
T ss_pred EcCCHHHHHHHHHcCC-CCEEEEChhHe-EEeccccCCCEEEEEEeecCCCCCCcceEEEEEEeCCCCC
Confidence 4568899999999975 99999877653 5554345887653 3322 2356786655 57754
No 58
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=65.56 E-value=7.7 Score=29.15 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=40.7
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe-CCcC------CccceEEEec-CCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV-GNNL------DVKGFGVATP-IGSPL 73 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v-g~~f------~~~~ygia~~-k~Spl 73 (74)
...+..+.|++++.++ .|++..|.--+ |.+.+.+|+|..| .+.. ....|++|+- |+|++
T Consensus 38 ~~~s~~~Ci~~I~~g~-AD~~~ld~~~v-y~A~~~~~~L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~~ 104 (691)
T 1cb6_A 38 KRDSPIQCIQAIAENR-ADAVTLDGGFI-YEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSF 104 (691)
T ss_dssp ECSSHHHHHHHHHTTS-CCBEEECHHHH-HHHHSTTTCEEEEEEEEEEETTEEESEEEEEEEEETTCCC
T ss_pred eCCCHHHHHHHHhcCC-CCEEEEChHHh-heeccccCCCEEEEEEeecCCCCCCCceEEEEEEECCCCC
Confidence 4568899999999975 99999987753 6665345888653 3332 2457887776 46654
No 59
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=64.27 E-value=15 Score=25.17 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=28.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEE
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMK 53 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~ 53 (74)
.-.+..+.|++++.++ .||+..|..-+ |.+.+ |+|..
T Consensus 32 ~~~s~~dCi~~I~~g~-AD~~~ld~g~v-y~Ag~--~~L~P 68 (335)
T 3tod_A 32 TASTTDDCIVLVLKGE-ADALNLDGGYI-YTAGK--CGLVP 68 (335)
T ss_dssp EESSHHHHHHHHHHTS-CCEEEECHHHH-HHHHH--TTCEE
T ss_pred ecCCHHHHHHHHHcCC-CCEEEECchhe-EEecc--CCcee
Confidence 4568899999999975 99999988753 66653 67653
No 60
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=63.49 E-value=14 Score=23.78 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
+.+.+..+.++++++|. .|.+|...+..+-.+... .+...-.+|....+-++.|+++|+
T Consensus 38 ~~~~gSg~ll~qi~~G~-aDv~isa~~~~~~~l~~~--g~~~~~~~~a~N~lVlV~P~~~P~ 96 (237)
T 3muq_A 38 VIAAGTGKALKMGENGD-VDLVMTHAPKAEGTFVEK--GYGVLPRKLMYNDFVIVGPKADPA 96 (237)
T ss_dssp EEEECHHHHHHHHHTTS-SSEEEECCHHHHHHHHHT--TSEEEEEEEEEEEEEEEECTTCTT
T ss_pred EEEcChHHHHHHHhcCC-CCEEEecCchhHHHHHhc--CCccccEEEEeCCEEEEEeCCChh
Confidence 44577889999999875 899988777654433222 122222355666788888888875
No 61
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=61.74 E-value=24 Score=22.60 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=32.8
Q ss_pred CHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEe
Q psy2802 16 SETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVAT 67 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~ 67 (74)
+..+.+..+.+|+ +||++...|.+.....+........+..+......+++
T Consensus 166 ~~~~~~~al~~G~-vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (324)
T 3ksx_A 166 SPANARAAFAAGQ-VDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLS 216 (324)
T ss_dssp CHHHHHHHHHTTC-CSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEEEEE
T ss_pred CHHHHHHHHHcCC-CCEEEEccHHHHHHHhcCCcEEEecccccCCCccEEEE
Confidence 6788999999875 99999888888776665433333334443333333433
No 62
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=61.43 E-value=12 Score=25.71 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=38.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeE-EeCCcCC----------ccceEEEec-CCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTM-KVGNNLD----------VKGFGVATP-IGSP 72 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~-~vg~~f~----------~~~ygia~~-k~Sp 72 (74)
.-.+..+.|++++.++ .|++..|..-+ |.+.+ |+|. ++.+... ...|++|+- |+|+
T Consensus 33 ~a~s~~~Ci~~I~~g~-AD~~~ld~~~v-y~Ag~--~~L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkK~s~ 100 (342)
T 3skp_A 33 SAETTEDCIAKIMNGE-ADAMSLDGGFV-YIAGK--CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSAS 100 (342)
T ss_dssp ECSSHHHHHHHHHHTS-CCBEEECHHHH-HHHHH--TTCEEEEEEECSCCTTGGGSCCCCEEEEEEEETTCS
T ss_pred eCCCHHHHHHHHHcCC-CCEEEECchhe-EEecc--CCcEEEEEEEeecCccccCCCcceEEEEEEEEcCCC
Confidence 4568899999999975 99999988765 77665 5764 3343332 237888874 4443
No 63
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=59.59 E-value=25 Score=23.16 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=37.4
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhC-------C-CCeEEeCCcCCccceEEEecCCCCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQ-------P-CDTMKVGNNLDVKGFGVATPIGSPLK 74 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~-------~-c~L~~vg~~f~~~~ygia~~k~Spl~ 74 (74)
....+.+..+.+++ .|..+....++....... + .++..+... ....+.|+.+++|+++
T Consensus 74 ~g~~~~i~~l~~g~-~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~-~~~~~~lvv~~ds~i~ 139 (327)
T 4ddd_A 74 TGSVYNLNSIRYSN-MDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASL-HKEYLTIVVKKSSNIS 139 (327)
T ss_dssp CCHHHHHHHHHTTS-CSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEE-EEEEEEEEEETTSSCC
T ss_pred CcHHHHHHHHHcCC-CcEEEECcHHHHHHHhCcCcccccCCCcchhehhcc-CCccEEEEEECCCCCC
Confidence 34677888888864 776666555443333221 3 567777654 3467889999999864
No 64
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=57.27 E-value=22 Score=23.17 Aligned_cols=56 Identities=21% Similarity=0.077 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHhhcCCceEEE-eccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFL-IESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i-~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
..+..+.++.+.+|+ +|.-+ ...+++. ...+. .+++.++..+.....++...++|+
T Consensus 45 ~~~~~~~~~al~sG~-~D~g~~~~~~~~~-a~~~G-~~v~~v~~~~~~~~~~~~~~~~~~ 101 (342)
T 4esw_A 45 PSNPSDVTELVGSGK-VDMGLKAMVGTLA-AKARG-FPVTSIGSLLDEPFTGICYLEGSG 101 (342)
T ss_dssp ESSGGGHHHHHHHTS-SSEEEEEHHHHHH-HHHTT-CCEEEEEEEECSCCEEEEEETTSS
T ss_pred CCChHHHHHHHHcCC-cCEEEecHHHHHH-HHHCC-CCeEEEEEeccCCccccccccccc
Confidence 345567888888876 66544 4444544 33333 678888877777788888877654
No 65
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=56.18 E-value=21 Score=22.88 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=36.7
Q ss_pred CHHHHHHHHhhcCCceEEEec-cch--hHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 16 SETEGVNKVRSSHGKYAFLIE-SPR--NDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i~d-~~~--l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
+..-.++.+.+|+ +|.+..- .|. ..|+.+-. .++..+|..+....||+++|+.+++
T Consensus 38 ~~~~~~~al~~G~-iD~~~e~w~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~l~Vp~~~~i 96 (256)
T 3l6g_A 38 DNAVAWQTVANGQ-ADGMVSAWLPNTHKTQWQKYG-KSVDLLGPNLKGAKVGFVVPSYMNV 96 (256)
T ss_dssp CHHHHHHHHHTTS-SSEEEEEEETTTTHHHHHHHG-GGEEEEEEEEEEEEEEEEEETTSCC
T ss_pred ChHHHHHHHHCCC-CeEEEcccCCcccHHHHHHhC-CceEEccccCCCceEEEEECCccCC
Confidence 4556678888765 8887643 233 24443322 4688888776666799999997654
No 66
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=55.91 E-value=20 Score=23.21 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=36.1
Q ss_pred CHHHHHHHHhhcCCceEEEe-ccchh--HHHHhhCCCCeEEeCCcCCccceEEEecCCCCCC
Q psy2802 16 SETEGVNKVRSSHGKYAFLI-ESPRN--DYENARQPCDTMKVGNNLDVKGFGVATPIGSPLK 74 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i~-d~~~l--~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl~ 74 (74)
+..-.++.+.+|+ +|.+.. ..|.+ .|+..-. .++..+|..+....|||++|+.++++
T Consensus 52 ~~~~~~~AL~~G~-iD~~~e~w~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~l~V~~~~~i~ 111 (280)
T 3tmg_A 52 TTSIMYQYLASGK-IDGTVSSWVPTADKFYYEKLK-TKFVDLGANYEGTIQGFVVPSYVPIS 111 (280)
T ss_dssp CHHHHHHHHHTTS-SSEEEEEEETTTTHHHHHHHG-GGEEEEEEEEEEEEEEEEEETTSCCC
T ss_pred CcHHHHHHHHCCC-CcEEEeccCCcccHHHHHHhc-CcEEEccccCCCceEEEEECCCCCCC
Confidence 3455677777765 888764 22322 2333222 36888887766667999999987653
No 67
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=55.47 E-value=25 Score=22.81 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=25.7
Q ss_pred CHHHHHHHHhhcCCceEEEeccchhHHHHhhCCC
Q psy2802 16 SETEGVNKVRSSHGKYAFLIESPRNDYENARQPC 49 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c 49 (74)
+..+.+..+.+|+ +||++...|.......+...
T Consensus 190 ~~~~~~~al~~G~-vDa~~~~~p~~~~~~~~~~~ 222 (341)
T 3un6_A 190 SPAEMPAALSEHR-ITGYSVAEPFGALGEKLGKG 222 (341)
T ss_dssp CGGGHHHHHHTTS-CSEEEEETTHHHHHHHSSCC
T ss_pred ChHHHHHHHHcCC-CCEEEecCCHHHHHHhcCCe
Confidence 4568889999875 99999999988777665533
No 68
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=52.23 E-value=39 Score=20.86 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=38.4
Q ss_pred ChhHhhhccCcccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe---CC-cCCccceEEEecCCCC
Q psy2802 1 MYYFMQMHKDKVFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV---GN-NLDVKGFGVATPIGSP 72 (74)
Q Consensus 1 ~w~~m~~~~~~~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v---g~-~f~~~~ygia~~k~Sp 72 (74)
+|+.++.+ -+..++..+.+..+.+|+..-++++.+..+. . -.+.++ .+ ...+..|++++.++++
T Consensus 142 ~~~~l~~~--~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~-----~-~~~~~v~~~P~~~~~~~~~~~ai~k~~~ 209 (237)
T 3r26_A 142 AWDTLSPK--LAPAEDVRGALALVERNEAPLGIVYGSDAVA-----S-KGVKVVATFPEDSHKKVEYPVAVVEGHN 209 (237)
T ss_dssp CHHHHGGG--EEEESSHHHHHHHHHTTSSSEEEEEHHHHHH-----C-SSEEEEEECCGGGSCCEEEEEEEBTTCC
T ss_pred CHHHhhhc--EEecCCHHHHHHHHHcCCCCEEEEEeccccc-----C-CCCeEEEECCcccCCeeeeeEEEEcCCC
Confidence 35555432 2456788899999998763455555443321 2 234443 22 3456678999999875
No 69
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=52.12 E-value=25 Score=23.29 Aligned_cols=58 Identities=14% Similarity=-0.032 Sum_probs=42.9
Q ss_pred ccccCHHHHHHHHhhcCCceEEEe-----ccc---hhHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLI-----ESP---RNDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~-----d~~---~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
...++.++.++.|.+|.-.+|+|- +.. +++.+.. -+|.++|+.+-+..+.+...+|..
T Consensus 32 ~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~---~~l~I~gE~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 32 QPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ---QDVFAHGEIRLDINFALYGNGTDS 97 (267)
T ss_dssp EEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT---TSSEEEEEEEEECCEEEECCSSCC
T ss_pred EEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc---CCcEEEEEEEEEeeeEEEecCCCC
Confidence 568899999999999764578872 333 3333333 359999999999999988877643
No 70
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=51.90 E-value=23 Score=20.74 Aligned_cols=57 Identities=4% Similarity=-0.080 Sum_probs=33.6
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccc-hhHHHHhhCCCCeEE--eCCcCCccceEEEecCCCCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESP-RNDYENARQPCDTMK--VGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~-~l~y~~~~~~c~L~~--vg~~f~~~~ygia~~k~Spl 73 (74)
..+..+.++++++|...|.++...+ .+.....+. +.. .-.++.....+++.+++.|+
T Consensus 33 ~~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vlv~~~~~~~ 92 (231)
T 1atg_A 33 SGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQG---FALPGSRFTYAIGKLVLWSAKPGLV 92 (231)
T ss_dssp EECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTT---CBCTTCCEEEEECCEEEEESSTTTS
T ss_pred ECCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcC---CCcCCceeEeeeeeEEEEEcCCCCC
Confidence 4567888999988643788887443 333333332 110 01234555678888888764
No 71
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=51.02 E-value=22 Score=26.76 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=38.8
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEE-eCCcCC-----------------ccceEEEecC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMK-VGNNLD-----------------VKGFGVATPI 69 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~-vg~~f~-----------------~~~ygia~~k 69 (74)
.-.+..+.|++++.++ .||+..|.--+ |.+.+ |+|.. +.|... ...|++|+-|
T Consensus 370 ~~~s~~dCi~~I~~g~-ADa~tldgg~v-y~Ag~--~~L~Pv~~E~y~~~~~~~~~~~~c~~~~~~~YyaVAVVk 440 (687)
T 3mc2_A 370 TEETPEDCIAATMKGE-ADAMSLDGGFA-YVAGH--CGLVPVLAENYLSTHSSGRLGSKCVNAPLEGYYVVAVVK 440 (687)
T ss_dssp EESSHHHHHHHHHHTS-SCBEEECHHHH-HHHHH--TTCEEEEECCBCCCSCSSCCSTTSTTCCCCCEEEEEEEE
T ss_pred eCCCHHHHHHHHhCCC-CCEEEECchHh-eehhh--cCcEEEeeecccccccccccccccccCCCceEEEEEEEe
Confidence 3567899999999975 99999987664 77665 88865 444443 2368988744
No 72
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=50.91 E-value=32 Score=23.26 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=42.5
Q ss_pred ccccCHHHHHHHHhhcCCceEEE-----eccchhHHH-HhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFL-----IESPRNDYE-NARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i-----~d~~~l~y~-~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
..+++..+.++.|.+|.-.+|+| .+..|..-+ .-.+..+|.++|+.+-+..+.+...+|..
T Consensus 35 ~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 35 IPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp EEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEEEEEEECCCEEEECTTCC
T ss_pred EecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEEEEEEeeeEEEEcCCCCC
Confidence 56789999999999975457888 344444221 11111469999999999988887766643
No 73
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=50.67 E-value=47 Score=21.29 Aligned_cols=53 Identities=9% Similarity=-0.040 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCceEEEeccchhHHHHhhCCCC-eEEeCCcCCccc-eEEEecCCC-CC
Q psy2802 19 EGVNKVRSSHGKYAFLIESPRNDYENARQPCD-TMKVGNNLDVKG-FGVATPIGS-PL 73 (74)
Q Consensus 19 egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~-L~~vg~~f~~~~-ygia~~k~S-pl 73 (74)
..++.+.+|+ .|..+...+.+-....+. .+ +.+++....... ++|..+++| +.
T Consensus 57 ~~~~al~~G~-~D~~~~~~~~~~~~~~~g-~~~~~~v~~~~~~~~~~~i~v~~ds~~i 112 (321)
T 2x7q_A 57 RLINLLNSNE-VDIAIGLTEAFIADIAKG-NENIHVLDTYVKSPLLWAVSTGSNRDDV 112 (321)
T ss_dssp HHHHHHHTTS-CSEEEEEHHHHHHHHHTT-CTTEEEEEEEECSCCEEEEEEESSCTTC
T ss_pred HHHHHHHcCC-ccEEecCcHHHHHHHHCC-CCcEEEEEEecCCCcceEEEECCCCCCC
Confidence 4688888875 777665443222222232 44 777765443333 588888888 65
No 74
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=50.27 E-value=44 Score=20.93 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=26.2
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQ 47 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~ 47 (74)
.+..+.+..+.+|+ +||++.+.|.+.+...+.
T Consensus 139 ~~~~~~~~al~~G~-vDa~~~~~~~~~~~~~~~ 170 (308)
T 2x26_A 139 LTPADARAAFQQGN-VDAWAIWDPYYSAALLQG 170 (308)
T ss_dssp CCHHHHHHHHHTTS-SSEEEEETTHHHHHHHHS
T ss_pred cChHHHHHHHHcCC-CCEEEecchhHHHHHhcC
Confidence 45788999999875 999999999988877664
No 75
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=49.47 E-value=23 Score=26.63 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=37.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEE-eCCcCC-----------c-cceEEEec-CCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMK-VGNNLD-----------V-KGFGVATP-IGSP 72 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~-vg~~f~-----------~-~~ygia~~-k~Sp 72 (74)
...+..+.|+++++++ .|++..|...+ |.+.+ |.|.. +.+... + ..|++|+- ++|+
T Consensus 373 ~~~s~~~Ci~~I~~g~-AD~~~ld~~~~-y~A~~--~gL~Pv~~E~y~~~~~c~~~~g~~~~Y~aVAVVkk~s~ 442 (686)
T 2d3i_A 373 VVDETKDCIIKIMKGE-ADAVALDGGLV-YTAGV--CGLVPVMAERYDDESQCSKTDERPASYFAVAVARKDSN 442 (686)
T ss_dssp EESSHHHHHHHHHHTS-CCBEEECHHHH-HHHHH--TTCEEEEEEECSCGGGC------CCCEEEEEEEESSSC
T ss_pred eCCCHHHHHHHHHcCC-CCEEEECchHH-hhhhc--CCceeeEEEeecccccccccCCCCceEEEEEEEecCCC
Confidence 4567899999999975 99999987663 45544 77755 334333 1 46776665 4654
No 76
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=48.97 E-value=17 Score=23.11 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=37.1
Q ss_pred cccCHHHHHHHHhhcCCceEEEe-ccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLI-ESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~-d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
...+..+.++++++|...|.|+. |...++.+.+..-.. .-....|.....+|+.++++|
T Consensus 55 ~~~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~-~~~~~~~a~~~lvl~~~~~~~ 114 (253)
T 3gzg_A 55 SYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVL-PAQRHNLLGNTLVLVAPASSK 114 (253)
T ss_dssp EEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSC-GGGEEEEEEECEEEEEETTCC
T ss_pred EECChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcC-CCcceeEEeeEEEEEEECCCC
Confidence 45667889999988755799998 545666665543110 000113445567899998875
No 77
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=48.97 E-value=47 Score=20.86 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=34.8
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhC--------C-CCeEEeCCcCCccceEEEecCCCCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQ--------P-CDTMKVGNNLDVKGFGVATPIGSPLK 74 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~--------~-c~L~~vg~~f~~~~ygia~~k~Spl~ 74 (74)
.+..++++.+.+++ .|..+............. + -++..++. +....+.++.+++||++
T Consensus 58 ~~~~~~~~~l~~g~-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~lvv~~~~~i~ 124 (314)
T 1us5_A 58 GGSVANINAINAGE-FEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAA-LYPEVVHVVARKDAGIR 124 (314)
T ss_dssp SCHHHHHHHHHTTS-CSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEE-EEEEEEEEEEETTSSCS
T ss_pred CcHHHHHHHHHcCC-CcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhh-cCcceEEEEEECCCCCC
Confidence 45678899999875 776665433321111111 2 45666543 34456889999998863
No 78
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=46.76 E-value=2.5 Score=28.49 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIG 70 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~ 70 (74)
.++..+|...+.+..+.+.+|.|.....|.++++ .++.++...| +.|..+|.|
T Consensus 116 ~~~R~~~~~~~~~~~~~dviIlDDGfQh~~l~rD-l~Ivv~d~~~---gng~lLPaG 168 (315)
T 4ehx_A 116 SEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRD-LNILLLKKKD---LKDRLLPAG 168 (315)
T ss_dssp ESSHHHHHHHHHHHHCCSEEEEETCTTCTTBCCS-EEEEEEEHHH---HTCCBTTTS
T ss_pred ecchHHHHHHHhhccCCcEEEecCcccccccccc-ceEEEeeeec---cCCeecccc
Confidence 3455566665544334789999999988888877 7777775433 455666655
No 79
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=45.52 E-value=34 Score=25.79 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=37.7
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEE-eCCcC----------CccceEEEecC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMK-VGNNL----------DVKGFGVATPI 69 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~-vg~~f----------~~~~ygia~~k 69 (74)
.-.+.++.|++++.|+ .||+..|..-+ |.+.+ |+|.. +.|.. ....|++|+-|
T Consensus 389 ~a~s~~~Ci~~I~~g~-AD~~~ld~~~v-y~Ag~--~~L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVk 452 (698)
T 3v83_A 389 SAETTEDCIAKIMNGE-ADAMSLDGGFV-YIAGK--CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVK 452 (698)
T ss_dssp EESSHHHHHHHHHHTS-CCEEEECHHHH-HHHHH--TTCEEEEEEECSCCTTGGGCCCCCEEEEEEEE
T ss_pred eCCCHHHHHHHHHcCC-CCEEEECcHHH-hhhhh--cCceEEEEEeeccccccccCCCCceEEEEEEe
Confidence 3467899999999975 99999987764 77765 88764 33333 23478988744
No 80
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=42.79 E-value=39 Score=25.32 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=28.4
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEe
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKV 54 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~v 54 (74)
...+.++.|++++.|+ .|+++.|.-- ++++.. |+|..+
T Consensus 373 ~~~s~~~Ci~~I~~g~-AD~~~ld~~~--~y~A~~-~gL~Pv 410 (689)
T 1blf_A 373 TASTTDDCIVLVLKGE-ADALNLDGGY--IYTAGK-CGLVPV 410 (689)
T ss_dssp EESSHHHHHHHHHHTS-CCEEEECHHH--HHHHHT-TTCEEE
T ss_pred eCCCHHHHHHHHHcCC-CCEEEeCcHH--HHHHhh-cCCEEE
Confidence 4567899999999975 9999987665 444545 887653
No 81
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=42.60 E-value=21 Score=23.31 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=34.3
Q ss_pred CHHHHHHHHhhcCCceEEE--eccchhHHHHhh-CCCCeEEeCCcCCccceEEEecCCC
Q psy2802 16 SETEGVNKVRSSHGKYAFL--IESPRNDYENAR-QPCDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i--~d~~~l~y~~~~-~~c~L~~vg~~f~~~~ygia~~k~S 71 (74)
+....++.+.+|+ +|.++ +......++..- ...++..++.......|||++|+.+
T Consensus 43 ~~~~~~~Al~~G~-iD~~~~~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~ 100 (298)
T 2rin_A 43 SVPVTYTSLKNKD-IDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAKG 100 (298)
T ss_dssp CHHHHHHHHHHTS-CCEEEEEEETTTHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEHHH
T ss_pred CcHHHHHHHHcCC-cEEEhhhccCchHHHHHHHhhCCCEEEeccCCCCCeEEEEEchhH
Confidence 4555677888865 88875 222222333322 2367888877545567999999865
No 82
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=40.35 E-value=54 Score=21.79 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=43.1
Q ss_pred cccccCHHHHHHHHhhcCCceEEEe-----ccc---hhHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 11 KVFVSSETEGVNKVRSSHGKYAFLI-----ESP---RNDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 11 ~~~v~~~~egv~~~~~~~g~~A~i~-----d~~---~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
-...++.++.++.|.+|.-.+|+|- +.. +++.+.. -+|.++|+.+-+..+.+...+|..
T Consensus 29 ~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~---~~l~I~gE~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 29 PLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR---RPVVILAETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH---SSEEEEEEEEEECCCEEEECSSCC
T ss_pred hCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc---CCcEEEEEEEEeeeeeEecCCCCC
Confidence 3567899999999998754578873 222 3344444 459999999999999988877643
No 83
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=39.09 E-value=37 Score=25.50 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=27.7
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEE
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMK 53 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~ 53 (74)
.-.+.++.|++++.|+ .|+++.|.--+ |.+.+ |.|..
T Consensus 373 ~~~s~~~Ci~~I~~g~-AD~~~ld~~~~-y~A~~--~gL~P 409 (691)
T 1cb6_A 373 SASTTEDCIALVLKGE-ADAMSLDGGYV-YTAGK--CGLVP 409 (691)
T ss_dssp EESSHHHHHHHHHHTS-CCBEEECHHHH-HHHHH--TTCEE
T ss_pred eCCCHHHHHHHHHcCC-CCEEEeCcHHH-HHHhh--cCCEE
Confidence 3467899999999975 99999876653 55544 77765
No 84
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=38.32 E-value=55 Score=22.26 Aligned_cols=58 Identities=9% Similarity=-0.013 Sum_probs=42.1
Q ss_pred ccccCHHHHHHHHhhcCCceEEEe-----ccch---hHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLI-----ESPR---NDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~-----d~~~---l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
..+++..+.++.|.+|. .+|+|- +..| ++.+... -+|.++|+.+-+..+.+...+|..
T Consensus 41 ~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~--~~l~I~gE~~l~I~h~Ll~~~g~~ 106 (329)
T 3luy_A 41 MPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDA--KDLVGFARVGVNVEFDAYVAQGAD 106 (329)
T ss_dssp EEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTC--SSCEEEEEEEEECCCEEEEETTCC
T ss_pred EeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhcc--CCcEEEEEEEEEeeeeeecCCCCC
Confidence 56789999999999987 889883 2222 3333332 468999999988888876655543
No 85
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=34.32 E-value=50 Score=21.56 Aligned_cols=55 Identities=9% Similarity=-0.028 Sum_probs=35.0
Q ss_pred CHHHHHHHHhhcCCceEEE--eccchhHHHHhhC-CCCeEEeCCcCCccceEEEecCCC
Q psy2802 16 SETEGVNKVRSSHGKYAFL--IESPRNDYENARQ-PCDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i--~d~~~l~y~~~~~-~c~L~~vg~~f~~~~ygia~~k~S 71 (74)
+....++.+.+|. +|.+. +-.....++.+-. .-++..+|.......||+++|+.+
T Consensus 45 ~~~~~~~Al~~G~-iDi~~e~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~ 102 (309)
T 1r9l_A 45 DYNVGYTSLASGD-ATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKT 102 (309)
T ss_dssp CHHHHHHHHHHTS-SCEEEEEEETTTHHHHHHTTGGGTEEECSCSEEEEEEEEEEEHHH
T ss_pred chHHHHHHHhcCC-ceEEeccccCccHHHHHHhhcCCcEEEecccCCCceEEEEEchhh
Confidence 5667788888875 88875 2221134443322 157888887655667999998854
No 86
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=33.88 E-value=39 Score=21.44 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=37.7
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCC-eEEeCCcCCccceEEEecCCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCD-TMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~-L~~vg~~f~~~~ygia~~k~Spl 73 (74)
+...+..++++++.++. .|..+.+.+.-+-. .|. -.+.-.++......++++++.|+
T Consensus 36 v~~~~S~~~~~~l~~g~-~Dig~~~~~~~~~e----~~~~~~l~~~~i~~d~lvvvv~~~~p~ 93 (264)
T 4ecf_A 36 VQGGGTGTGLSQIQEGA-VQIGNSDLFAGEQK----GINARQLVDHRVAVVGITPIVNKKVGV 93 (264)
T ss_dssp EEEECHHHHHHHHHHTS-SSEEEESSCGGGST----TCCGGGEECCEEEEEEEEEEECTTSSC
T ss_pred EEeCCCHHHHHHHHcCC-CchhhccCCCChhH----HhhccCCEEEEEEEEEEEEEEcCCCcc
Confidence 34568899999999976 88877777653311 011 12234466677788888888775
No 87
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=31.72 E-value=1e+02 Score=19.87 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCceEEEecc---chhHHHHhhCCCCeEEeCCcCCccceEEEecCCC
Q psy2802 18 TEGVNKVRSSHGKYAFLIES---PRNDYENARQPCDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 18 ~egv~~~~~~~g~~A~i~d~---~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~S 71 (74)
.-..+.+.+|+ +|++..-. .--.|+.+- ..++..+|.......||+++|+..
T Consensus 203 ~~~~~al~~G~-iD~~~e~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~Vp~~~ 257 (268)
T 2b4l_A 203 GPMWTAIATGS-ADASLSAWLPNTHKAYAAKY-KGKYDDIGTSMTGVKMGLVVPQYM 257 (268)
T ss_dssp THHHHHHHHTS-SSEEEEEEETTTTHHHHHHT-TTSEEEEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHHHCCC-CeEEehhhcCcCcHHHHHHH-cCCeEEccCCCCCCeEEEEEehhh
Confidence 44567777765 88883211 112344333 378888888766668999999865
No 88
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=30.50 E-value=1e+02 Score=19.32 Aligned_cols=59 Identities=8% Similarity=-0.088 Sum_probs=32.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCC-CCeEEeCCcCCccceEEEecCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQP-CDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~-c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
...+..+..+.+.+|+ ..+.+.....+..+.+..+ -.+..-.+.-.....+++++++|+
T Consensus 215 ~~~~~~~~~~~f~~G~-~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~ 274 (351)
T 4edp_A 215 TYSKSSDLANMFSNGE-IVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSK 274 (351)
T ss_dssp EECCHHHHHHHHHTTS-CSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCS
T ss_pred ccCChHHHHHHHHcCC-EEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCC
Confidence 3456778888888876 5555544444444444442 332211111223456789999886
No 89
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=30.39 E-value=1e+02 Score=19.62 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=33.8
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCC-cCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGN-NLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~-~f~~~~ygia~~k~Sp 72 (74)
+...+..+.++++++|. .|..|...+...-.+... .+...-. .+....+.+++|++.|
T Consensus 58 l~~~~s~~l~~~l~~G~-~Dl~i~~~~~~~~~l~~~--~~~~~~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 58 WYKSDTTVTINYLKDGI-VDVGITYSPVAERISIKH--GISESPSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp EEECCHHHHHHHHHTTS-CSEEEESCHHHHHHHHHT--TSBCSSCEEEEEEEEEEEECTTCT
T ss_pred EEeCCHHHHHHHHHcCC-CcEEEEcCchhhhHHHhC--CcccceeeeEEeccEEEEecCCCh
Confidence 44567889999999875 888777544321111111 1111112 3455667788888877
No 90
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=30.29 E-value=97 Score=20.12 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=37.1
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
...+..+|++++.+|. .|..+.+.+.-.-.+.. |++.. .++......++.+++.+
T Consensus 34 ~~~gS~~~~~~l~~g~-~Di~~~~~~~~~~e~~~--~~l~~--~~~~~d~lvvvv~~~~~ 88 (321)
T 1ixh_A 34 QGIGSSGGVKQIIANT-VDFGASDAPLSDEKLAQ--EGLFQ--FPTVIGGVVLAVNIPGL 88 (321)
T ss_dssp EECCHHHHHHHHHTTC-SSEEEESSCCCHHHHHH--HTEEE--EEEEEEEEEEEECCTTC
T ss_pred ecCCCHHHHHHHHcCC-CcEEecccCCChhhHhh--CCCEE--eeeeeeeEEEEEeCCCC
Confidence 3467889999999976 88888887765443332 44433 34566677788877654
No 91
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=29.79 E-value=18 Score=23.30 Aligned_cols=50 Identities=4% Similarity=0.175 Sum_probs=31.6
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCC
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIG 70 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~ 70 (74)
+.+.+++++.+|+|+ -.+|.|..--+ +..+|....+...+...+|....+
T Consensus 5 ~~~ie~Ai~~lr~G~--~Viv~DdedRE-----nEgDli~aAe~~T~e~i~fm~~~~ 54 (204)
T 1tks_A 5 FTPIEEALEAYKNGE--FLIVMDDEDRE-----NEGDLIMAAELITQEKMAFLVRYS 54 (204)
T ss_dssp SCCHHHHHHHHHTTC--CEEEESSSCTT-----CBCEEEEEGGGCCHHHHHHHHHTB
T ss_pred hhhHHHHHHHHHCCC--eEEEEeCCCCC-----CCEEEEEEhhhCCHHHHHHHHHhC
Confidence 678999999999975 77777754321 226666666655555444444433
No 92
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=29.18 E-value=26 Score=20.11 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.5
Q ss_pred CceEEEeccchhHHH
Q psy2802 29 GKYAFLIESPRNDYE 43 (74)
Q Consensus 29 g~~A~i~d~~~l~y~ 43 (74)
|.||+|.|+.+|-+.
T Consensus 78 G~DAVV~DSK~LG~~ 92 (103)
T 2pk8_A 78 GGDAVVIDSKVLGLV 92 (103)
T ss_dssp TTEEEEECTTTTTTS
T ss_pred CCceEEEehhhhccc
Confidence 469999999988764
No 93
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=26.94 E-value=17 Score=23.38 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=28.3
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEE
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGV 65 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygi 65 (74)
+++.+++++.+|.|+ -.+|.|..--+ +..+|....+...+...+|
T Consensus 4 ~~~ie~Ai~~lr~G~--~Viv~DdedRE-----nEgDli~aAe~~T~e~i~f 48 (206)
T 3mio_A 4 LDSVERAVADIAAGK--AVIVIDDEDRE-----NEGDLIFAAEKATPEMVAF 48 (206)
T ss_dssp CCCHHHHHHHHHTTC--CEEEESSSCTT-----CCCEEEEEGGGCCHHHHHH
T ss_pred chhHHHHHHHHHCCC--eEEEEeCCCCc-----cceeEEEEhHhCCHHHHHH
Confidence 568999999999865 77777754311 1266666655544444333
No 94
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=26.11 E-value=16 Score=24.01 Aligned_cols=45 Identities=4% Similarity=0.305 Sum_probs=29.0
Q ss_pred ccCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEE
Q psy2802 14 VSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGV 65 (74)
Q Consensus 14 v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygi 65 (74)
+.+.+++|+.+|+|+ ..+|.|..--+ +..+|....+...+...+|
T Consensus 12 ~~~ie~Ai~alr~G~--~Viv~DdedRE-----nEgDLi~aAe~~T~e~i~f 56 (233)
T 1k4i_A 12 FDAIPDVIQAFKNGE--FVVVLDDPSRE-----NEADLIIAAESVTTEQMAF 56 (233)
T ss_dssp CCCHHHHHHHHHTTC--CEEEECCTTTT-----CCEEEEEEGGGCCHHHHHH
T ss_pred hhHHHHHHHHHHCCC--eEEEEeCCCCC-----cceeEEEEhhhCCHHHHHH
Confidence 678999999999865 77777754321 1256666555544444333
No 95
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.12 E-value=64 Score=19.86 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=28.4
Q ss_pred ccccCHHHHHHHHhh-cCCceEEEeccchhHHHHhh
Q psy2802 12 VFVSSETEGVNKVRS-SHGKYAFLIESPRNDYENAR 46 (74)
Q Consensus 12 ~~v~~~~egv~~~~~-~~g~~A~i~d~~~l~y~~~~ 46 (74)
..+.+.++|++.+++ .+|.|++|+-.....+..++
T Consensus 33 i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~ 68 (196)
T 2q5c_A 33 TKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKS 68 (196)
T ss_dssp EEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHh
Confidence 456788999998877 56789999999998887654
No 96
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=24.10 E-value=1.2e+02 Score=20.50 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=24.5
Q ss_pred CHHHHHHHHhhcCCceEEEeccchhHHHHhhC
Q psy2802 16 SETEGVNKVRSSHGKYAFLIESPRNDYENARQ 47 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~ 47 (74)
...+.+..+++|+ +||++...|.......+.
T Consensus 192 ~~~~~~~aL~~G~-vDa~~~~eP~~~~~~~~g 222 (417)
T 2g29_A 192 PPAQMVANVKVNA-MESFCVGEPWPLQTVNQG 222 (417)
T ss_dssp CGGGHHHHHHTTS-CSEEEEETTHHHHHHHHT
T ss_pred CHHHHHHHHHcCC-CCEEEeCCCHHHHHHHcC
Confidence 4567899999876 999998888877766664
No 97
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=23.75 E-value=1.4e+02 Score=18.67 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=29.6
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
.+..+....+.+|+-.-++.+...+.... ... -++..+-+.-.....+++++++|+
T Consensus 185 ~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~i~k~s~ 240 (324)
T 4i1d_A 185 TSGAQSAQLLNDGEVDMEMAWNGRVSAVA-KEG-AKVSFTYNQGILQSTSLCILKGAP 240 (324)
T ss_dssp CSHHHHHHHHHHTSCSEEEEEHHHHHHHH-HTT-CSEEEEEEEEEEEEEEEEEBTTCT
T ss_pred cCcchHHHHHhCCCEEEEecccHHHHHHH-hcC-CCeEEEecCeeeeccEEEEECCCC
Confidence 46677888888876334444544443332 222 233332111122345788999886
No 98
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=23.18 E-value=40 Score=21.43 Aligned_cols=56 Identities=4% Similarity=-0.002 Sum_probs=34.0
Q ss_pred cCHHHHHHHHhhcCCceEEEe-----------ccch-----hHHHHh-hC---C-CCeEEeCCcCCccceEEEecCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLI-----------ESPR-----NDYENA-RQ---P-CDTMKVGNNLDVKGFGVATPIGS 71 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~-----------d~~~-----l~y~~~-~~---~-c~L~~vg~~f~~~~ygia~~k~S 71 (74)
.+....++.+.+|+ +|.++. ..|. -+++.. ++ . -++..++.......|+|++|+.+
T Consensus 43 g~~~~~~~al~~G~-iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~ 119 (275)
T 1sw5_A 43 GGTLVNYEALKRND-IQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADW 119 (275)
T ss_dssp CSHHHHHHHHHHTS-SSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEHHH
T ss_pred CchHHHHHHHHcCC-CcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEEEeHHH
Confidence 35677888898875 898872 1111 012211 11 0 25888877645568999999865
No 99
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=22.92 E-value=85 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCceEEEe-ccchhHHHHhhCC-CCeEEeCCcCCccce
Q psy2802 17 ETEGVNKVRSSHGKYAFLI-ESPRNDYENARQP-CDTMKVGNNLDVKGF 63 (74)
Q Consensus 17 ~~egv~~~~~~~g~~A~i~-d~~~l~y~~~~~~-c~L~~vg~~f~~~~y 63 (74)
..+-++|+...+..+.+|. |..+|+.-+.+.| |+..+ .|...||
T Consensus 24 m~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~li---sf~s~gf 69 (330)
T 3t7a_A 24 MKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLI---SFHSKGF 69 (330)
T ss_dssp HHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEE---ECCCTTC
T ss_pred HHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEE---EeccCCC
Confidence 5678888887544566555 5778898999999 99766 4666664
No 100
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.77 E-value=86 Score=17.74 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=20.5
Q ss_pred cccCHHHHHHHHhhcCCceEEEeccc
Q psy2802 13 FVSSETEGVNKVRSSHGKYAFLIESP 38 (74)
Q Consensus 13 ~v~~~~egv~~~~~~~g~~A~i~d~~ 38 (74)
...+..||++.+++.. .|.+|.|--
T Consensus 38 ~a~~g~eAl~~~~~~~-~DlvllDi~ 62 (123)
T 2lpm_A 38 TASRMQEALDIARKGQ-FDIAIIDVN 62 (123)
T ss_dssp CSCCHHHHHHHHHHCC-SSEEEECSS
T ss_pred EECCHHHHHHHHHhCC-CCEEEEecC
Confidence 3578999999998864 899999864
No 101
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=22.02 E-value=1.1e+02 Score=17.89 Aligned_cols=49 Identities=12% Similarity=-0.038 Sum_probs=30.8
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCccceEEEecCCCCC
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFGVATPIGSPL 73 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~~ygia~~k~Spl 73 (74)
.+..+-++.+++|+ +|..|...+.. . -++.. ..+....+.++++++.||
T Consensus 44 ~~~~~l~~~L~~g~-iDl~i~~~~~~------~-~~l~~--~~l~~~~~~~v~~~~hpl 92 (218)
T 2y7p_A 44 PNAGNLKEDMESGA-VDLALGLLPEL------Q-TGFFQ--RRLFRHRYVCMFRKDHPS 92 (218)
T ss_dssp CCTTTHHHHHHHTS-SCEEEECCTTC------C-TTEEE--EEEEEECEEEEEETTCSS
T ss_pred CCcccHHHHHhCCC-ceEEEecCCCC------C-cceeE--EEeeeccEEEEEcCCCCC
Confidence 34567788888875 88777543321 1 22332 245667788888988876
No 102
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=21.95 E-value=1.2e+02 Score=18.96 Aligned_cols=34 Identities=9% Similarity=-0.098 Sum_probs=19.5
Q ss_pred CHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCC
Q psy2802 16 SETEGVNKVRSSHGKYAFLIESPRNDYENARQPCD 50 (74)
Q Consensus 16 ~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~ 50 (74)
+..+-++++.+ .|+|++|.|.|.+--..-++.|+
T Consensus 225 n~~~~~~~l~~-~GvdgI~TD~p~~~~~~l~~~~~ 258 (258)
T 2o55_A 225 DSEEDWKKCLE-LQVDLICSNYPFGLMNFLSNISE 258 (258)
T ss_dssp CCHHHHHHHHH-HTCSEEEESCHHHHHHHHTC---
T ss_pred CCHHHHHHHHH-cCCCEEEeCCHHHHHHHHHHhcC
Confidence 44556666665 35899999998654333333363
No 103
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=21.54 E-value=59 Score=21.04 Aligned_cols=57 Identities=5% Similarity=-0.013 Sum_probs=34.3
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHH-HhhCCCCeEEeCCcCCccceEEEecCCCC
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYE-NARQPCDTMKVGNNLDVKGFGVATPIGSP 72 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~-~~~~~c~L~~vg~~f~~~~ygia~~k~Sp 72 (74)
+.+.+..+.++++++|. .|.||...+..+-. +... +...-..|-...+-|+.|+++|
T Consensus 38 ~~~~gSg~ll~qi~~G~-aDVfisa~~~~~~~l~~~G---~~~~~~~~a~N~LVLV~P~~~P 95 (242)
T 3kn3_A 38 WVAVGTGNALKLGENCD-VDVVFVHAPKVELEYVEKG---FGIDRTPVMYNDFVIIGNPSFK 95 (242)
T ss_dssp EEEECHHHHHHHHHTTC-CSEEEECCHHHHHHHHHHT---SEEEEEEEECSCEEEEECTHHH
T ss_pred EEEcCcHHHHHHHhcCC-CCEEEecChHhHHHHHhcC---CCccceEEEcceEEEEEeCCCc
Confidence 45667889999999875 89998866654432 2222 1111223444456677776554
No 104
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=21.47 E-value=78 Score=21.90 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=27.1
Q ss_pred ccccCHHHHHHHHhhcCCceEEEeccchhHHHHh
Q psy2802 12 VFVSSETEGVNKVRSSHGKYAFLIESPRNDYENA 45 (74)
Q Consensus 12 ~~v~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~ 45 (74)
..+++..+++..|.+|+ +||.|.+.+...-...
T Consensus 66 ~~y~~~~~a~~aL~nG~-vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 66 NQSSSYLAAYKSLIAGE-TKAIVLNSVFENIIEL 98 (398)
T ss_dssp EECSSHHHHHHHHHTTS-CSCEEEEHHHHHHHHH
T ss_pred EecCCHHHHHHHHHcCC-CCEEEEchHHHHHHHh
Confidence 35788999999999976 9999999887666544
No 105
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=20.92 E-value=69 Score=20.87 Aligned_cols=40 Identities=5% Similarity=0.185 Sum_probs=25.7
Q ss_pred cCHHHHHHHHhhcCCceEEEeccchhHHHHhhCCCCeEEeCCcCCcc
Q psy2802 15 SSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVK 61 (74)
Q Consensus 15 ~~~~egv~~~~~~~g~~A~i~d~~~l~y~~~~~~c~L~~vg~~f~~~ 61 (74)
++.+++++.+|+|+ -.+|.|..--+ +..+|....+...+.
T Consensus 2 ~~ie~Ai~alr~G~--~Viv~DdedRE-----nEgDli~aAe~~Tpe 41 (227)
T 1snn_A 2 NNVEKAIEALKKGE--IILVYDSDERE-----GETDMVVASQFITPE 41 (227)
T ss_dssp CHHHHHHHHHHTTC--CEEEECCTTTT-----CCEEEEEEGGGCCHH
T ss_pred chHHHHHHHHHCCC--eEEEEeCCCCC-----CceeEEEEhhhCCHH
Confidence 46889999999865 77787765321 225666655544443
Done!